Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51038.t1 | XP_003608984.1 | 90.3 | 216 | 18 | 1 | 1 | 213 | 1 | 216 | 1.50E-98 | 369 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51038.t1 | G7JPV2 | 90.3 | 216 | 18 | 1 | 1 | 213 | 1 | 216 | 1.1e-98 | 369.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene51038 | -0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene049807 | MS.gene51038 | -0.801682 | 8.02E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene51038 | -0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene51038 | -0.81792 | 2.57E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene51038 | -0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene51038 | -0.822282 | 2.58E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene51038 | -0.800367 | 1.49E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene51038 | -0.824837 | 6.50E-54 | -1.69E-46 |
| MS.gene053272 | MS.gene51038 | 0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene51038 | -0.803087 | 4.12E-49 | -1.69E-46 |
| MS.gene056082 | MS.gene51038 | -0.81679 | 4.61E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene51038 | -0.813065 | 3.09E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene51038 | -0.856647 | 2.79E-62 | -1.69E-46 |
| MS.gene05985 | MS.gene51038 | 0.863258 | 2.83E-64 | -1.69E-46 |
| MS.gene060525 | MS.gene51038 | -0.832609 | 8.57E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51041 | MS.gene51038 | PPI |
| MS.gene51038 | MS.gene001161 | PPI |
| MS.gene51071 | MS.gene51038 | PPI |
| MS.gene51038 | MS.gene51072 | PPI |
| MS.gene51038 | MS.gene033167 | PPI |
| MS.gene51038 | MS.gene51040 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51038.t1 | MTR_4g107630 | 90.278 | 216 | 18 | 1 | 1 | 213 | 1 | 216 | 2.90e-136 | 381 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51038.t1 | AT5G62720 | 56.322 | 174 | 73 | 2 | 42 | 213 | 58 | 230 | 5.88e-67 | 206 |
| MS.gene51038.t1 | AT3G47980 | 62.577 | 163 | 61 | 0 | 51 | 213 | 77 | 239 | 1.77e-65 | 202 |
| MS.gene51038.t1 | AT5G62720 | 55.072 | 138 | 59 | 2 | 42 | 177 | 58 | 194 | 2.45e-46 | 152 |
Find 61 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCAACAGTTGAGTTTC+TGG | 0.125934 | 8.2:-18236057 | MS.gene51038:CDS |
| CGGTGGTAGTACCAAATTTA+TGG | 0.147539 | 8.2:-18237558 | MS.gene51038:CDS |
| GCAGAAGTACAGTATGTTTA+TGG | 0.153489 | 8.2:-18236340 | MS.gene51038:intron |
| ATGTCTTCTGTAATTGTTTC+CGG | 0.215984 | 8.2:-18237578 | MS.gene51038:CDS |
| GGAATGAGTGGAAGAGGATT+TGG | 0.281069 | 8.2:+18237379 | None:intergenic |
| ATTTGCAGCAATGGCCATAT+TGG | 0.282337 | 8.2:-18236769 | MS.gene51038:CDS |
| TTGTGCAGCCATTGGTGTTT+TGG | 0.288656 | 8.2:-18236307 | MS.gene51038:CDS |
| CTGATCCATCTTTCCCAATA+TGG | 0.299857 | 8.2:+18236755 | None:intergenic |
| ACGTGGCCTCACCCTCCATC+TGG | 0.304995 | 8.2:-18237418 | MS.gene51038:CDS |
| TGACAACGGTACCATAAATT+TGG | 0.325955 | 8.2:+18237547 | None:intergenic |
| AAGAAGGAATGTGATTATTA+AGG | 0.343485 | 8.2:-18237450 | MS.gene51038:CDS |
| CAATGGCTGCACAACCTACT+TGG | 0.345485 | 8.2:+18236316 | None:intergenic |
| TTTGCAGCAATGGCCATATT+GGG | 0.365439 | 8.2:-18236768 | MS.gene51038:CDS |
| CACCCTCAGCCCCTTCTGCC+CGG | 0.367068 | 8.2:-18236662 | MS.gene51038:CDS |
| CACCCTCCATCTGGGAGAAC+TGG | 0.369226 | 8.2:-18237409 | MS.gene51038:CDS |
| GAATGAGTGGAAGAGGATTT+GGG | 0.381725 | 8.2:+18237380 | None:intergenic |
| AAAACCAATCTCTTATTCTT+CGG | 0.383257 | 8.2:+18237494 | None:intergenic |
| ATTCCTTCAGTGACATTCTC+TGG | 0.388063 | 8.2:-18237361 | MS.gene51038:CDS |
| GACATTCTCTGGCCTTCTGC+AGG | 0.394844 | 8.2:-18237350 | MS.gene51038:intron |
| ATGTTAAAAGATGGTGATAA+TGG | 0.407105 | 8.2:+18237521 | None:intergenic |
| GGCAGAAGGGGCTGAGGGTG+AGG | 0.416383 | 8.2:+18236665 | None:intergenic |
| CAAACCGAAGAATAAGAGAT+TGG | 0.426795 | 8.2:-18237498 | MS.gene51038:CDS |
| TCAATCACAGTTGCACCATT+AGG | 0.429248 | 8.2:-18236711 | MS.gene51038:CDS |
| ACTGTGATTGAGAGTCCTTT+TGG | 0.443290 | 8.2:+18236723 | None:intergenic |
| GCACTCTTGGCTAGCAATCC+AGG | 0.449810 | 8.2:+18236267 | None:intergenic |
| TACCCGGGCAGAAGGGGCTG+AGG | 0.452991 | 8.2:+18236659 | None:intergenic |
| AGCAGCAACACTAGCACTCT+TGG | 0.457034 | 8.2:+18236254 | None:intergenic |
| TAGAATGCATCCTGCTGCCC+CGG | 0.459572 | 8.2:+18236021 | None:intergenic |
| ACCCTCAGCCCCTTCTGCCC+GGG | 0.469153 | 8.2:-18236661 | MS.gene51038:intron |
| ATTTGGGTTTGAAAGGAAGA+AGG | 0.469818 | 8.2:-18237466 | MS.gene51038:CDS |
| TTCGGTTTGATGTTAAAAGA+TGG | 0.478176 | 8.2:+18237512 | None:intergenic |
| CAAGTAGGTTGTGCAGCCAT+TGG | 0.487463 | 8.2:-18236315 | MS.gene51038:CDS |
| GATCAGTTATTGACACCAAA+AGG | 0.488111 | 8.2:-18236738 | MS.gene51038:CDS |
| GAAAAGCAATGGCATGCTTA+CGG | 0.488854 | 8.2:+18236093 | None:intergenic |
| AGAGCAGACACTGCTCCTAA+TGG | 0.490696 | 8.2:+18236696 | None:intergenic |
| ATCAGGGGCATTTGCAGCAA+TGG | 0.492588 | 8.2:-18236778 | MS.gene51038:intron |
| CATAAATTTGGTACTACCAC+CGG | 0.501343 | 8.2:+18237559 | None:intergenic |
| AGGTTTCCAGTTCTCCCAGA+TGG | 0.502717 | 8.2:+18237403 | None:intergenic |
| TTAGATTATTTGGGTTTGAA+AGG | 0.508877 | 8.2:-18237473 | MS.gene51038:CDS |
| CGTGGCCTCACCCTCCATCT+GGG | 0.513595 | 8.2:-18237417 | MS.gene51038:CDS |
| TTTCCAGTTCTCCCAGATGG+AGG | 0.521215 | 8.2:+18237406 | None:intergenic |
| AATGGCCATATTGGGAAAGA+TGG | 0.522770 | 8.2:-18236760 | MS.gene51038:CDS |
| ACTGAAGGAATGAGTGGAAG+AGG | 0.523502 | 8.2:+18237373 | None:intergenic |
| AATAGTAGTACCCGGGCAGA+AGG | 0.525314 | 8.2:+18236651 | None:intergenic |
| AATGGCTGCACAACCTACTT+GGG | 0.529946 | 8.2:+18236317 | None:intergenic |
| TAGTAGTACCCGGGCAGAAG+GGG | 0.552816 | 8.2:+18236653 | None:intergenic |
| GTTCTCCCAGATGGAGGGTG+AGG | 0.554854 | 8.2:+18237412 | None:intergenic |
| GGATTTGCAATATTTGGACC+TGG | 0.557125 | 8.2:-18236285 | MS.gene51038:CDS |
| TTCCAGTTCTCCCAGATGGA+GGG | 0.561076 | 8.2:+18237407 | None:intergenic |
| ATAGTAGTACCCGGGCAGAA+GGG | 0.569371 | 8.2:+18236652 | None:intergenic |
| AGTATGTTTATGGCCCAAGT+AGG | 0.569674 | 8.2:-18236330 | MS.gene51038:CDS |
| AATGTCACTGAAGGAATGAG+TGG | 0.582208 | 8.2:+18237367 | None:intergenic |
| AGAATGCATCCTGCTGCCCC+GGG | 0.589508 | 8.2:+18236022 | None:intergenic |
| ACCCGGGCAGAAGGGGCTGA+GGG | 0.592231 | 8.2:+18236660 | None:intergenic |
| ACAGCATCAATGAAAAGCAA+TGG | 0.607570 | 8.2:+18236082 | None:intergenic |
| TGCAAATCCCAAAACACCAA+TGG | 0.618790 | 8.2:+18236299 | None:intergenic |
| AGGCCAGAGAATGTCACTGA+AGG | 0.622535 | 8.2:+18237358 | None:intergenic |
| TCTTCTGTAATTGTTTCCGG+TGG | 0.651325 | 8.2:-18237575 | MS.gene51038:CDS |
| TGAGTGGAAGAGGATTTGGG+AGG | 0.662152 | 8.2:+18237383 | None:intergenic |
| TATTAAGGCATCAAGCGACG+TGG | 0.697251 | 8.2:-18237435 | MS.gene51038:CDS |
| GGTGATAATGGTAATGACAA+CGG | 0.705821 | 8.2:+18237533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGAATAATAAATAAAAAAT+AGG | + | chr8.2:18236265-18236284 | None:intergenic | 10.0% |
| !! | GATAAATATCATTAATACAA+TGG | - | chr8.2:18236987-18237006 | MS.gene51038:intron | 15.0% |
| !! | TAAATTCATCTTTCAAATAA+AGG | + | chr8.2:18236287-18236306 | None:intergenic | 15.0% |
| !!! | AAAAAACTTTTTAAATGTGA+AGG | - | chr8.2:18236341-18236360 | MS.gene51038:intron | 15.0% |
| !!! | ATTATAATACTATTTCTTTG+AGG | + | chr8.2:18236508-18236527 | None:intergenic | 15.0% |
| !!! | TATTACTACTATTTCTTTTT+AGG | - | chr8.2:18236955-18236974 | MS.gene51038:intron | 15.0% |
| !! | ACATAATAGTGAGATAAAAT+TGG | + | chr8.2:18236383-18236402 | None:intergenic | 20.0% |
| !! | TAATGATATTTATCCCATTA+AGG | + | chr8.2:18236981-18237000 | None:intergenic | 20.0% |
| !! | TGTGTTTATAAAAATCATCA+GGG | - | chr8.2:18236793-18236812 | MS.gene51038:intron | 20.0% |
| !!! | AGATTGGTTTTAGATTATTT+GGG | - | chr8.2:18236105-18236124 | MS.gene51038:intron | 20.0% |
| !!! | TAATTTTATCAAATCATTGC+CGG | + | chr8.2:18237051-18237070 | None:intergenic | 20.0% |
| !!! | TTTGTTGGTTTAATATTTGA+TGG | + | chr8.2:18237456-18237475 | None:intergenic | 20.0% |
| ! | AAAACCAATCTCTTATTCTT+CGG | + | chr8.2:18236096-18236115 | None:intergenic | 25.0% |
| ! | AAGAAGGAATGTGATTATTA+AGG | - | chr8.2:18236137-18236156 | MS.gene51038:intron | 25.0% |
| ! | ATGTTAAAAGATGGTGATAA+TGG | + | chr8.2:18236069-18236088 | None:intergenic | 25.0% |
| ! | GTGTGTTTATAAAAATCATC+AGG | - | chr8.2:18236792-18236811 | MS.gene51038:intron | 25.0% |
| ! | GTGTTTATAAAAATCATCAG+GGG | - | chr8.2:18236794-18236813 | MS.gene51038:intron | 25.0% |
| ! | TAAACACACATCAAAACAAA+AGG | + | chr8.2:18236781-18236800 | None:intergenic | 25.0% |
| ! | TAATAAGTATATCCATCTTG+TGG | + | chr8.2:18236436-18236455 | None:intergenic | 25.0% |
| ! | TTTAAATTATCTCCACAAGA+TGG | - | chr8.2:18236421-18236440 | MS.gene51038:intron | 25.0% |
| ! | TTTCATAAAATATGCTCTTG+TGG | + | chr8.2:18236535-18236554 | None:intergenic | 25.0% |
| !! | AATAACTTCTCATTTGAAAC+TGG | + | chr8.2:18236611-18236630 | None:intergenic | 25.0% |
| !! | GAGTACTTGTCAATAATTTT+TGG | - | chr8.2:18236725-18236744 | MS.gene51038:CDS | 25.0% |
| !! | TTAGATTATTTGGGTTTGAA+AGG | - | chr8.2:18236114-18236133 | MS.gene51038:intron | 25.0% |
| !!! | AACAAAAGCATTTAAGTAGT+AGG | + | chr8.2:18237172-18237191 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTTTATACCGTTG+TGG | + | chr8.2:18236330-18236349 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTAGGCCTTAAT+GGG | - | chr8.2:18236965-18236984 | MS.gene51038:intron | 25.0% |
| !!! | GAGATTGGTTTTAGATTATT+TGG | - | chr8.2:18236104-18236123 | MS.gene51038:intron | 25.0% |
| !!! | TATTTCTTTTTAGGCCTTAA+TGG | - | chr8.2:18236964-18236983 | MS.gene51038:intron | 25.0% |
| AACATTGAAGCAAAAATACC+TGG | + | chr8.2:18237398-18237417 | None:intergenic | 30.0% | |
| ACATTGAAGCAAAAATACCT+GGG | + | chr8.2:18237397-18237416 | None:intergenic | 30.0% | |
| ATAGTAGTAATAGTAGTACC+CGG | + | chr8.2:18236947-18236966 | None:intergenic | 30.0% | |
| ATGTCTTCTGTAATTGTTTC+CGG | - | chr8.2:18236009-18236028 | MS.gene51038:CDS | 30.0% | |
| ATTACTATTCTATGCCACAA+CGG | - | chr8.2:18236313-18236332 | MS.gene51038:CDS | 30.0% | |
| ! | CACGATATCACAAATTTTGT+TGG | + | chr8.2:18237471-18237490 | None:intergenic | 30.0% |
| ! | TTCGGTTTGATGTTAAAAGA+TGG | + | chr8.2:18236078-18236097 | None:intergenic | 30.0% |
| !!! | GTTTTGGGATTTGCAATATT+TGG | - | chr8.2:18237296-18237315 | MS.gene51038:intron | 30.0% |
| AAAAAATAGGAACCTGCAGA+AGG | + | chr8.2:18236252-18236271 | None:intergenic | 35.0% | |
| ACAGCATCAATGAAAAGCAA+TGG | + | chr8.2:18237508-18237527 | None:intergenic | 35.0% | |
| ACTTCTGCATAATCACACTT+AGG | + | chr8.2:18237235-18237254 | None:intergenic | 35.0% | |
| AGTTTCAACAGTTGAGTTTC+TGG | - | chr8.2:18237530-18237549 | MS.gene51038:CDS | 35.0% | |
| ATTGAAGCAAAAATACCTGG+GGG | + | chr8.2:18237395-18237414 | None:intergenic | 35.0% | |
| CAAACCGAAGAATAAGAGAT+TGG | - | chr8.2:18236089-18236108 | MS.gene51038:CDS | 35.0% | |
| CATAAATTTGGTACTACCAC+CGG | + | chr8.2:18236031-18236050 | None:intergenic | 35.0% | |
| CATTGAAGCAAAAATACCTG+GGG | + | chr8.2:18237396-18237415 | None:intergenic | 35.0% | |
| GATCAGTTATTGACACCAAA+AGG | - | chr8.2:18236849-18236868 | MS.gene51038:intron | 35.0% | |
| GCATATCAATGTTGTGATGA+TGG | + | chr8.2:18236666-18236685 | None:intergenic | 35.0% | |
| TAGTAGTAATAGTAGTACCC+GGG | + | chr8.2:18236946-18236965 | None:intergenic | 35.0% | |
| TGACAACGGTACCATAAATT+TGG | + | chr8.2:18236043-18236062 | None:intergenic | 35.0% | |
| ! | ATTTGGGTTTGAAAGGAAGA+AGG | - | chr8.2:18236121-18236140 | MS.gene51038:intron | 35.0% |
| ! | GCAGAAGTACAGTATGTTTA+TGG | - | chr8.2:18237247-18237266 | MS.gene51038:intron | 35.0% |
| ! | TTCTGGTATGTTTTGTATCC+CGG | - | chr8.2:18237547-18237566 | MS.gene51038:CDS | 35.0% |
| !! | GGTGATAATGGTAATGACAA+CGG | + | chr8.2:18236057-18236076 | None:intergenic | 35.0% |
| AATGGCCATATTGGGAAAGA+TGG | - | chr8.2:18236827-18236846 | MS.gene51038:intron | 40.0% | |
| AATGTCACTGAAGGAATGAG+TGG | + | chr8.2:18236223-18236242 | None:intergenic | 40.0% | |
| AGTATGTTTATGGCCCAAGT+AGG | - | chr8.2:18237257-18237276 | MS.gene51038:intron | 40.0% | |
| ATTCCTTCAGTGACATTCTC+TGG | - | chr8.2:18236226-18236245 | MS.gene51038:CDS | 40.0% | |
| ATTTGCAGCAATGGCCATAT+TGG | - | chr8.2:18236818-18236837 | MS.gene51038:intron | 40.0% | |
| CGGTGGTAGTACCAAATTTA+TGG | - | chr8.2:18236029-18236048 | MS.gene51038:CDS | 40.0% | |
| CTGATCCATCTTTCCCAATA+TGG | + | chr8.2:18236835-18236854 | None:intergenic | 40.0% | |
| GAAAAGCAATGGCATGCTTA+CGG | + | chr8.2:18237497-18237516 | None:intergenic | 40.0% | |
| GAATGAGTGGAAGAGGATTT+GGG | + | chr8.2:18236210-18236229 | None:intergenic | 40.0% | |
| GGATTTGCAATATTTGGACC+TGG | - | chr8.2:18237302-18237321 | MS.gene51038:intron | 40.0% | |
| TCAATCACAGTTGCACCATT+AGG | - | chr8.2:18236876-18236895 | MS.gene51038:intron | 40.0% | |
| TCTTCTGTAATTGTTTCCGG+TGG | - | chr8.2:18236012-18236031 | MS.gene51038:CDS | 40.0% | |
| TGCAAATCCCAAAACACCAA+TGG | + | chr8.2:18237291-18237310 | None:intergenic | 40.0% | |
| TTGAAGCAAAAATACCTGGG+GGG | + | chr8.2:18237394-18237413 | None:intergenic | 40.0% | |
| TTTGCAGCAATGGCCATATT+GGG | - | chr8.2:18236819-18236838 | MS.gene51038:intron | 40.0% | |
| ! | ACTGTGATTGAGAGTCCTTT+TGG | + | chr8.2:18236867-18236886 | None:intergenic | 40.0% |
| ! | TCTGGTATGTTTTGTATCCC+GGG | - | chr8.2:18237548-18237567 | MS.gene51038:CDS | 40.0% |
| AATGGCTGCACAACCTACTT+GGG | + | chr8.2:18237273-18237292 | None:intergenic | 45.0% | |
| ACTGAAGGAATGAGTGGAAG+AGG | + | chr8.2:18236217-18236236 | None:intergenic | 45.0% | |
| CGACACTGATACATTGACAC+CGG | - | chr8.2:18237029-18237048 | MS.gene51038:intron | 45.0% | |
| GGAATGAGTGGAAGAGGATT+TGG | + | chr8.2:18236211-18236230 | None:intergenic | 45.0% | |
| ! | CTGGTATGTTTTGTATCCCG+GGG | - | chr8.2:18237549-18237568 | MS.gene51038:CDS | 45.0% |
| ! | TATTAAGGCATCAAGCGACG+TGG | - | chr8.2:18236152-18236171 | MS.gene51038:intron | 45.0% |
| !! | TGTGCAGCCATTGGTGTTTT+GGG | - | chr8.2:18237281-18237300 | MS.gene51038:intron | 45.0% |
| !! | TTGTGCAGCCATTGGTGTTT+TGG | - | chr8.2:18237280-18237299 | MS.gene51038:intron | 45.0% |
| AATAGTAGTACCCGGGCAGA+AGG | + | chr8.2:18236939-18236958 | None:intergenic | 50.0% | |
| AGAGCAGACACTGCTCCTAA+TGG | + | chr8.2:18236894-18236913 | None:intergenic | 50.0% | |
| AGCAGCAACACTAGCACTCT+TGG | + | chr8.2:18237336-18237355 | None:intergenic | 50.0% | |
| AGGCCAGAGAATGTCACTGA+AGG | + | chr8.2:18236232-18236251 | None:intergenic | 50.0% | |
| AGGTTTCCAGTTCTCCCAGA+TGG | + | chr8.2:18236187-18236206 | None:intergenic | 50.0% | |
| ATAGTAGTACCCGGGCAGAA+GGG | + | chr8.2:18236938-18236957 | None:intergenic | 50.0% | |
| CAAGTAGGTTGTGCAGCCAT+TGG | - | chr8.2:18237272-18237291 | MS.gene51038:intron | 50.0% | |
| CAATGGCTGCACAACCTACT+TGG | + | chr8.2:18237274-18237293 | None:intergenic | 50.0% | |
| TGAGTGGAAGAGGATTTGGG+AGG | + | chr8.2:18236207-18236226 | None:intergenic | 50.0% | |
| TTCCAGTTCTCCCAGATGGA+GGG | + | chr8.2:18236183-18236202 | None:intergenic | 50.0% | |
| TTTCCAGTTCTCCCAGATGG+AGG | + | chr8.2:18236184-18236203 | None:intergenic | 50.0% | |
| !! | ATCAGGGGCATTTGCAGCAA+TGG | - | chr8.2:18236809-18236828 | MS.gene51038:intron | 50.0% |
| GCACTCTTGGCTAGCAATCC+AGG | + | chr8.2:18237323-18237342 | None:intergenic | 55.0% | |
| TAGAATGCATCCTGCTGCCC+CGG | + | chr8.2:18237569-18237588 | None:intergenic | 55.0% | |
| TAGTAGTACCCGGGCAGAAG+GGG | + | chr8.2:18236937-18236956 | None:intergenic | 55.0% | |
| ! | GACATTCTCTGGCCTTCTGC+AGG | - | chr8.2:18236237-18236256 | MS.gene51038:CDS | 55.0% |
| AGAATGCATCCTGCTGCCCC+GGG | + | chr8.2:18237568-18237587 | None:intergenic | 60.0% | |
| CACCCTCCATCTGGGAGAAC+TGG | - | chr8.2:18236178-18236197 | MS.gene51038:intron | 60.0% | |
| GTTCTCCCAGATGGAGGGTG+AGG | + | chr8.2:18236178-18236197 | None:intergenic | 60.0% | |
| ! | ACTGACTCTGTTCACCCCCC+AGG | - | chr8.2:18237377-18237396 | MS.gene51038:CDS | 60.0% |
| ! | GTTTTGTATCCCGGGGCAGC+AGG | - | chr8.2:18237556-18237575 | MS.gene51038:CDS | 60.0% |
| ACGTGGCCTCACCCTCCATC+TGG | - | chr8.2:18236169-18236188 | MS.gene51038:intron | 65.0% | |
| CGTGGCCTCACCCTCCATCT+GGG | - | chr8.2:18236170-18236189 | MS.gene51038:intron | 65.0% | |
| ACCCGGGCAGAAGGGGCTGA+GGG | + | chr8.2:18236930-18236949 | None:intergenic | 70.0% | |
| ACCCTCAGCCCCTTCTGCCC+GGG | - | chr8.2:18236926-18236945 | MS.gene51038:intron | 70.0% | |
| CACCCTCAGCCCCTTCTGCC+CGG | - | chr8.2:18236925-18236944 | MS.gene51038:intron | 70.0% | |
| GGCAGAAGGGGCTGAGGGTG+AGG | + | chr8.2:18236925-18236944 | None:intergenic | 70.0% | |
| TACCCGGGCAGAAGGGGCTG+AGG | + | chr8.2:18236931-18236950 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 18236009 | 18237600 | 18236009 | ID=MS.gene51038 |
| chr8.2 | mRNA | 18236009 | 18237600 | 18236009 | ID=MS.gene51038.t1;Parent=MS.gene51038 |
| chr8.2 | exon | 18237351 | 18237600 | 18237351 | ID=MS.gene51038.t1.exon1;Parent=MS.gene51038.t1 |
| chr8.2 | CDS | 18237351 | 18237600 | 18237351 | ID=cds.MS.gene51038.t1;Parent=MS.gene51038.t1 |
| chr8.2 | exon | 18236662 | 18236795 | 18236662 | ID=MS.gene51038.t1.exon2;Parent=MS.gene51038.t1 |
| chr8.2 | CDS | 18236662 | 18236795 | 18236662 | ID=cds.MS.gene51038.t1;Parent=MS.gene51038.t1 |
| chr8.2 | exon | 18236211 | 18236358 | 18236211 | ID=MS.gene51038.t1.exon3;Parent=MS.gene51038.t1 |
| chr8.2 | CDS | 18236211 | 18236358 | 18236211 | ID=cds.MS.gene51038.t1;Parent=MS.gene51038.t1 |
| chr8.2 | exon | 18236009 | 18236115 | 18236009 | ID=MS.gene51038.t1.exon4;Parent=MS.gene51038.t1 |
| chr8.2 | CDS | 18236009 | 18236115 | 18236009 | ID=cds.MS.gene51038.t1;Parent=MS.gene51038.t1 |
| Gene Sequence |
| Protein sequence |
