Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033167.t1 | XP_003608984.1 | 89.5 | 200 | 18 | 1 | 4 | 200 | 1 | 200 | 8.50E-89 | 336.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033167.t1 | G7JPV2 | 89.5 | 200 | 18 | 1 | 4 | 200 | 1 | 200 | 6.1e-89 | 336.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033167 | MS.gene51072 | PPI |
| MS.gene51041 | MS.gene033167 | PPI |
| MS.gene033167 | MS.gene001161 | PPI |
| MS.gene51071 | MS.gene033167 | PPI |
| MS.gene033167 | MS.gene51040 | PPI |
| MS.gene51038 | MS.gene033167 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033167.t1 | MTR_4g107630 | 89.500 | 200 | 18 | 1 | 4 | 200 | 1 | 200 | 9.17e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033167.t1 | AT5G62720 | 55.696 | 158 | 67 | 2 | 45 | 200 | 58 | 214 | 9.07e-57 | 180 |
| MS.gene033167.t1 | AT3G47980 | 61.905 | 147 | 56 | 0 | 54 | 200 | 77 | 223 | 3.72e-55 | 177 |
| MS.gene033167.t1 | AT5G62720 | 55.072 | 138 | 59 | 2 | 45 | 180 | 58 | 194 | 1.75e-46 | 153 |
Find 70 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCAACAGTTGAGTTTC+TGG | 0.125934 | 8.3:-16118909 | MS.gene033167:intron |
| CGGTGGTAGTACCAAATTTA+TGG | 0.147539 | 8.3:-16120413 | MS.gene033167:CDS |
| GCAGAAGTACAGTATGTTTA+TGG | 0.153489 | 8.3:-16119192 | MS.gene033167:intron |
| CAGTATATCAAATTGGAATT+TGG | 0.215578 | 8.3:+16118388 | None:intergenic |
| ATGTCTTCTGTAATTGTTTC+CGG | 0.215984 | 8.3:-16120433 | MS.gene033167:CDS |
| GGAATGAGTGGAAGAGGATT+TGG | 0.281069 | 8.3:+16120234 | None:intergenic |
| ATTTGCAGCAATGGCCATAT+TGG | 0.282337 | 8.3:-16119621 | MS.gene033167:CDS |
| TTGTGCAGCCATTGGTGTTT+TGG | 0.288656 | 8.3:-16119159 | MS.gene033167:CDS |
| CTGATCCATCTTTCCCAATA+TGG | 0.299857 | 8.3:+16119607 | None:intergenic |
| ACGTGGCCTCACCCTCCATC+TGG | 0.304995 | 8.3:-16120273 | MS.gene033167:CDS |
| TGACAACGGTACCATAAATT+TGG | 0.325955 | 8.3:+16120402 | None:intergenic |
| CAATGGCTGCACAACCTACT+TGG | 0.345485 | 8.3:+16119168 | None:intergenic |
| AAGAGGGAATGTGATTATTA+AGG | 0.350305 | 8.3:-16120305 | MS.gene033167:CDS |
| TTTGCAGCAATGGCCATATT+GGG | 0.365439 | 8.3:-16119620 | MS.gene033167:CDS |
| AAATTGGAATTTGGAAGATA+TGG | 0.368448 | 8.3:+16118397 | None:intergenic |
| CACCCTCCATCTGGGAGAAC+TGG | 0.369226 | 8.3:-16120264 | MS.gene033167:CDS |
| CACCCTCGGCCCCTTCTGCC+CGG | 0.369307 | 8.3:-16119514 | MS.gene033167:CDS |
| GAATGAGTGGAAGAGGATTT+GGG | 0.381725 | 8.3:+16120235 | None:intergenic |
| AAAACCAATCTCTTATTCTT+CGG | 0.383257 | 8.3:+16120349 | None:intergenic |
| ATTCCTTCAGTGACATTCTC+TGG | 0.388063 | 8.3:-16120216 | MS.gene033167:CDS |
| GGATCTTCAGTATATCAAAT+TGG | 0.392498 | 8.3:+16118381 | None:intergenic |
| GACATTCTCTGGCCTTCTGC+AGG | 0.394844 | 8.3:-16120205 | MS.gene033167:intron |
| GGCAGAAGGGGCCGAGGGTG+AGG | 0.399239 | 8.3:+16119517 | None:intergenic |
| AAACAATTACAGAAGACATT+TGG | 0.403022 | 8.3:+16120437 | None:intergenic |
| ATGTTAAAAGATGGTGATAA+TGG | 0.407105 | 8.3:+16120376 | None:intergenic |
| TTGAGCTAAGAATATTCTCC+AGG | 0.411526 | 8.3:+16118359 | None:intergenic |
| TACCCGGGCAGAAGGGGCCG+AGG | 0.413354 | 8.3:+16119511 | None:intergenic |
| CAAACCGAAGAATAAGAGAT+TGG | 0.426795 | 8.3:-16120353 | MS.gene033167:CDS |
| TCAATCACAGTTGCACCATT+AGG | 0.429248 | 8.3:-16119563 | MS.gene033167:CDS |
| ACTGTGATTGAGAGTCCTTT+TGG | 0.443290 | 8.3:+16119575 | None:intergenic |
| GCACTCTTGGCTAGCAATCC+AGG | 0.449810 | 8.3:+16119119 | None:intergenic |
| AGCAGCAACACTAGCACTCT+TGG | 0.457034 | 8.3:+16119106 | None:intergenic |
| TTCGGTTTGATGTTAAAAGA+TGG | 0.478176 | 8.3:+16120367 | None:intergenic |
| ACCCTCGGCCCCTTCTGCCC+GGG | 0.479524 | 8.3:-16119513 | MS.gene033167:intron |
| CAAGTAGGTTGTGCAGCCAT+TGG | 0.487463 | 8.3:-16119167 | MS.gene033167:CDS |
| GATCAGTTATTGACACCAAA+AGG | 0.488111 | 8.3:-16119590 | MS.gene033167:CDS |
| GAAAAGCAATGGCATGCTTA+CGG | 0.488854 | 8.3:+16118945 | None:intergenic |
| AGAGCAGACACTGCTCCTAA+TGG | 0.490696 | 8.3:+16119548 | None:intergenic |
| ATCAGGGGCATTTGCAGCAA+TGG | 0.492588 | 8.3:-16119630 | MS.gene033167:intron |
| CATAAATTTGGTACTACCAC+CGG | 0.501343 | 8.3:+16120414 | None:intergenic |
| AGGTTTCCAGTTCTCCCAGA+TGG | 0.502717 | 8.3:+16120258 | None:intergenic |
| TTAGATTATTTGGGTTTGAA+AGG | 0.508877 | 8.3:-16120328 | MS.gene033167:CDS |
| TATTTGGGTTTGAAAGGAAG+AGG | 0.509585 | 8.3:-16120322 | MS.gene033167:CDS |
| CGTGGCCTCACCCTCCATCT+GGG | 0.513595 | 8.3:-16120272 | MS.gene033167:CDS |
| TCTCTTGTTTGCCTCACCCT+CGG | 0.516605 | 8.3:-16119528 | MS.gene033167:CDS |
| TTTCCAGTTCTCCCAGATGG+AGG | 0.521215 | 8.3:+16120261 | None:intergenic |
| AATGGCCATATTGGGAAAGA+TGG | 0.522770 | 8.3:-16119612 | MS.gene033167:CDS |
| ACTGAAGGAATGAGTGGAAG+AGG | 0.523502 | 8.3:+16120228 | None:intergenic |
| AATAGTAGTACCCGGGCAGA+AGG | 0.525314 | 8.3:+16119503 | None:intergenic |
| AATGGCTGCACAACCTACTT+GGG | 0.529946 | 8.3:+16119169 | None:intergenic |
| ATTTGGGTTTGAAAGGAAGA+GGG | 0.533091 | 8.3:-16120321 | MS.gene033167:CDS |
| GTTCTCCCAGATGGAGGGTG+AGG | 0.554854 | 8.3:+16120267 | None:intergenic |
| GGATTTGCAATATTTGGACC+TGG | 0.557125 | 8.3:-16119137 | MS.gene033167:CDS |
| TTCCAGTTCTCCCAGATGGA+GGG | 0.561076 | 8.3:+16120262 | None:intergenic |
| TTTGATATACTGAAGATCCC+TGG | 0.565785 | 8.3:-16118377 | MS.gene033167:CDS |
| AGTATGTTTATGGCCCAAGT+AGG | 0.569674 | 8.3:-16119182 | MS.gene033167:CDS |
| TAGTAGTACCCGGGCAGAAG+GGG | 0.574187 | 8.3:+16119505 | None:intergenic |
| AATGTCACTGAAGGAATGAG+TGG | 0.582208 | 8.3:+16120222 | None:intergenic |
| ATAGTAGTACCCGGGCAGAA+GGG | 0.590742 | 8.3:+16119504 | None:intergenic |
| ACCCGGGCAGAAGGGGCCGA+GGG | 0.592909 | 8.3:+16119512 | None:intergenic |
| TGAGCTAAGAATATTCTCCA+GGG | 0.596755 | 8.3:+16118360 | None:intergenic |
| AATTTGGAAGATATGGCAGA+AGG | 0.603741 | 8.3:+16118404 | None:intergenic |
| ACAGCATCAATGAAAAGCAA+TGG | 0.607570 | 8.3:+16118934 | None:intergenic |
| TGGAAGATATGGCAGAAGGA+TGG | 0.616679 | 8.3:+16118408 | None:intergenic |
| TGCAAATCCCAAAACACCAA+TGG | 0.618790 | 8.3:+16119151 | None:intergenic |
| AGGCCAGAGAATGTCACTGA+AGG | 0.622535 | 8.3:+16120213 | None:intergenic |
| TCTTCTGTAATTGTTTCCGG+TGG | 0.651325 | 8.3:-16120430 | MS.gene033167:CDS |
| TGAGTGGAAGAGGATTTGGG+AGG | 0.662152 | 8.3:+16120238 | None:intergenic |
| TATTAAGGCATCAAGCGACG+TGG | 0.697251 | 8.3:-16120290 | MS.gene033167:CDS |
| GGTGATAATGGTAATGACAA+CGG | 0.705821 | 8.3:+16120388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGAATAATAAATAAAAAAT+AGG | + | chr8.3:16118629-16118648 | None:intergenic | 10.0% |
| !! | ATTATAATAGTATTTCTTTG+AGG | + | chr8.3:16118871-16118890 | None:intergenic | 15.0% |
| !! | GATAAATATCATTAATACAA+TGG | - | chr8.3:16119354-16119373 | MS.gene033167:intron | 15.0% |
| !! | TAAATTCATCTTTCAAATAA+AGG | + | chr8.3:16118651-16118670 | None:intergenic | 15.0% |
| !!! | AAAAAAACTTTTTAATGTGA+AGG | - | chr8.3:16118704-16118723 | MS.gene033167:intron | 15.0% |
| !!! | TATTACTACTATTTCTTTTT+AGG | - | chr8.3:16119322-16119341 | MS.gene033167:intron | 15.0% |
| !! | ACATAATAGTGAGATAAAAT+TGG | + | chr8.3:16118746-16118765 | None:intergenic | 20.0% |
| !! | TAATGATATTTATCCCATTA+AGG | + | chr8.3:16119348-16119367 | None:intergenic | 20.0% |
| !! | TCTATTTGTACAATCAATAA+AGG | - | chr8.3:16119992-16120011 | MS.gene033167:intron | 20.0% |
| !! | TGTGTTTATAAAAATCATCA+GGG | - | chr8.3:16119160-16119179 | MS.gene033167:CDS | 20.0% |
| !!! | AGATTGGTTTTAGATTATTT+GGG | - | chr8.3:16118469-16118488 | MS.gene033167:intron | 20.0% |
| !!! | ATGTTCATTGTTTTAAAAAC+CGG | + | chr8.3:16120127-16120146 | None:intergenic | 20.0% |
| !!! | TAATTTTATCAAATCATTGC+CGG | + | chr8.3:16119418-16119437 | None:intergenic | 20.0% |
| !!! | TTTGTTGGTTTAATATTTGA+TGG | + | chr8.3:16119823-16119842 | None:intergenic | 20.0% |
| ! | AAAACCAATCTCTTATTCTT+CGG | + | chr8.3:16118460-16118479 | None:intergenic | 25.0% |
| ! | AAACAATTACAGAAGACATT+TGG | + | chr8.3:16118372-16118391 | None:intergenic | 25.0% |
| ! | AAATTGGAATTTGGAAGATA+TGG | + | chr8.3:16120412-16120431 | None:intergenic | 25.0% |
| ! | ATGTTAAAAGATGGTGATAA+TGG | + | chr8.3:16118433-16118452 | None:intergenic | 25.0% |
| ! | ATTACTATTCTATGCAACAA+CGG | - | chr8.3:16118677-16118696 | MS.gene033167:intron | 25.0% |
| ! | CAGTATATCAAATTGGAATT+TGG | + | chr8.3:16120421-16120440 | None:intergenic | 25.0% |
| ! | GTGTGTTTATAAAAATCATC+AGG | - | chr8.3:16119159-16119178 | MS.gene033167:CDS | 25.0% |
| ! | GTGTTTATAAAAATCATCAG+GGG | - | chr8.3:16119161-16119180 | MS.gene033167:CDS | 25.0% |
| ! | TAAACACACATCAAAACAAA+AGG | + | chr8.3:16119148-16119167 | None:intergenic | 25.0% |
| ! | TTTCATAAAATATGCTCTTG+TGG | + | chr8.3:16118898-16118917 | None:intergenic | 25.0% |
| !! | AATAACTTCTCATTTGAAAC+TGG | + | chr8.3:16118971-16118990 | None:intergenic | 25.0% |
| !! | AGTTTTTAAATTATCTCCAC+AGG | - | chr8.3:16118780-16118799 | MS.gene033167:intron | 25.0% |
| !! | GCTTCTCTATAAAATCATTT+TGG | - | chr8.3:16118998-16119017 | MS.gene033167:intron | 25.0% |
| !! | GTGTACTTGTCAATAATTTT+TGG | - | chr8.3:16119092-16119111 | MS.gene033167:CDS | 25.0% |
| !! | TTAGATTATTTGGGTTTGAA+AGG | - | chr8.3:16118478-16118497 | MS.gene033167:intron | 25.0% |
| !!! | AACAAAAGCATTTAAGTAGT+AGG | + | chr8.3:16119539-16119558 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTAGGCCTTAAT+GGG | - | chr8.3:16119332-16119351 | MS.gene033167:intron | 25.0% |
| !!! | GAGATTGGTTTTAGATTATT+TGG | - | chr8.3:16118468-16118487 | MS.gene033167:intron | 25.0% |
| !!! | TATTTCTTTTTAGGCCTTAA+TGG | - | chr8.3:16119331-16119350 | MS.gene033167:intron | 25.0% |
| AACATTGAAGCAAAAATACC+TGG | + | chr8.3:16119765-16119784 | None:intergenic | 30.0% | |
| AAGAGGGAATGTGATTATTA+AGG | - | chr8.3:16118501-16118520 | MS.gene033167:intron | 30.0% | |
| ACATTGAAGCAAAAATACCT+GGG | + | chr8.3:16119764-16119783 | None:intergenic | 30.0% | |
| AGTTAAACTGGATAGTTTGA+TGG | + | chr8.3:16120060-16120079 | None:intergenic | 30.0% | |
| ATAGTAGTAATAGTAGTACC+CGG | + | chr8.3:16119314-16119333 | None:intergenic | 30.0% | |
| ATGTCTTCTGTAATTGTTTC+CGG | - | chr8.3:16118373-16118392 | MS.gene033167:CDS | 30.0% | |
| CTCATTGCAAGTTAACTAAT+TGG | - | chr8.3:16120256-16120275 | MS.gene033167:CDS | 30.0% | |
| GAACTAAAATTACCTAAGTG+TGG | - | chr8.3:16119587-16119606 | MS.gene033167:CDS | 30.0% | |
| GGATCTTCAGTATATCAAAT+TGG | + | chr8.3:16120428-16120447 | None:intergenic | 30.0% | |
| GTAAACTAGTAGTAATGAAC+CGG | + | chr8.3:16120194-16120213 | None:intergenic | 30.0% | |
| TAAACTAGTAGTAATGAACC+GGG | + | chr8.3:16120193-16120212 | None:intergenic | 30.0% | |
| TAATAAGTATATCCATCCTG+TGG | + | chr8.3:16118799-16118818 | None:intergenic | 30.0% | |
| TCTTGCTGAACAAAAAAAAC+AGG | + | chr8.3:16120286-16120305 | None:intergenic | 30.0% | |
| TTTAAATTATCTCCACAGGA+TGG | - | chr8.3:16118784-16118803 | MS.gene033167:intron | 30.0% | |
| ! | CACGATATCACAAATTTTGT+TGG | + | chr8.3:16119838-16119857 | None:intergenic | 30.0% |
| ! | CGGGTACTAAAAATTGTTTT+CGG | + | chr8.3:16120174-16120193 | None:intergenic | 30.0% |
| ! | GTACTAAAAATTGTTTTCGG+AGG | + | chr8.3:16120171-16120190 | None:intergenic | 30.0% |
| ! | TTCGGTTTGATGTTAAAAGA+TGG | + | chr8.3:16118442-16118461 | None:intergenic | 30.0% |
| !! | CAATTAGTTAACTTGCAATG+AGG | + | chr8.3:16120258-16120277 | None:intergenic | 30.0% |
| !!! | CGAAAACAATTTTTAGTACC+CGG | - | chr8.3:16120172-16120191 | MS.gene033167:intron | 30.0% |
| !!! | CTGGTTCAGTTTTAAAACAT+TGG | + | chr8.3:16120037-16120056 | None:intergenic | 30.0% |
| !!! | GTTTTGGGATTTGCAATATT+TGG | - | chr8.3:16119663-16119682 | MS.gene033167:intron | 30.0% |
| !!! | TGTTTTTTTTGTTCAGCAAG+AGG | - | chr8.3:16120285-16120304 | MS.gene033167:CDS | 30.0% |
| AAAAAATAGGAACCTGCAGA+AGG | + | chr8.3:16118616-16118635 | None:intergenic | 35.0% | |
| AAAACATTGGACGTGTTTAC+TGG | + | chr8.3:16120024-16120043 | None:intergenic | 35.0% | |
| AATTTGGAAGATATGGCAGA+AGG | + | chr8.3:16120405-16120424 | None:intergenic | 35.0% | |
| ACAGCATCAATGAAAAGCAA+TGG | + | chr8.3:16119875-16119894 | None:intergenic | 35.0% | |
| AGTTTCAACAGTTGAGTTTC+TGG | - | chr8.3:16119897-16119916 | MS.gene033167:intron | 35.0% | |
| ATTGAAGCAAAAATACCTGG+GGG | + | chr8.3:16119762-16119781 | None:intergenic | 35.0% | |
| CAAACCGAAGAATAAGAGAT+TGG | - | chr8.3:16118453-16118472 | MS.gene033167:intron | 35.0% | |
| CATAAATTTGGTACTACCAC+CGG | + | chr8.3:16118395-16118414 | None:intergenic | 35.0% | |
| CATTGAAGCAAAAATACCTG+GGG | + | chr8.3:16119763-16119782 | None:intergenic | 35.0% | |
| CTTGTTTATGGTTCAATCGT+TGG | - | chr8.3:16120095-16120114 | MS.gene033167:intron | 35.0% | |
| GATCAGTTATTGACACCAAA+AGG | - | chr8.3:16119216-16119235 | MS.gene033167:intron | 35.0% | |
| GCATATCAATGTTGTGATGA+TGG | + | chr8.3:16119027-16119046 | None:intergenic | 35.0% | |
| TAGTAGTAATAGTAGTACCC+GGG | + | chr8.3:16119313-16119332 | None:intergenic | 35.0% | |
| TGACAACGGTACCATAAATT+TGG | + | chr8.3:16118407-16118426 | None:intergenic | 35.0% | |
| TGTCTACAGTTCAGTTAAAC+TGG | + | chr8.3:16120072-16120091 | None:intergenic | 35.0% | |
| TTTGATATACTGAAGATCCC+TGG | - | chr8.3:16120429-16120448 | MS.gene033167:CDS | 35.0% | |
| ! | ATTTGGGTTTGAAAGGAAGA+GGG | - | chr8.3:16118485-16118504 | MS.gene033167:intron | 35.0% |
| ! | CTGTAGACAGTTCTTGTTTA+TGG | - | chr8.3:16120083-16120102 | MS.gene033167:intron | 35.0% |
| ! | GCAGAAGTACAGTATGTTTA+TGG | - | chr8.3:16119614-16119633 | MS.gene033167:CDS | 35.0% |
| ! | TATTTGGGTTTGAAAGGAAG+AGG | - | chr8.3:16118484-16118503 | MS.gene033167:intron | 35.0% |
| ! | TTCTGGTATGTTTTGTATCC+CGG | - | chr8.3:16119914-16119933 | MS.gene033167:intron | 35.0% |
| !! | GGTGATAATGGTAATGACAA+CGG | + | chr8.3:16118421-16118440 | None:intergenic | 35.0% |
| !!! | TTTTTTTGTTCAGCAAGAGG+TGG | - | chr8.3:16120288-16120307 | MS.gene033167:CDS | 35.0% |
| AATGGCCATATTGGGAAAGA+TGG | - | chr8.3:16119194-16119213 | MS.gene033167:intron | 40.0% | |
| AATGTCACTGAAGGAATGAG+TGG | + | chr8.3:16118587-16118606 | None:intergenic | 40.0% | |
| ACTTCTGCATAACCACACTT+AGG | + | chr8.3:16119602-16119621 | None:intergenic | 40.0% | |
| AGTATGTTTATGGCCCAAGT+AGG | - | chr8.3:16119624-16119643 | MS.gene033167:CDS | 40.0% | |
| ATTCCTTCAGTGACATTCTC+TGG | - | chr8.3:16118590-16118609 | MS.gene033167:intron | 40.0% | |
| ATTTGCAGCAATGGCCATAT+TGG | - | chr8.3:16119185-16119204 | MS.gene033167:CDS | 40.0% | |
| CGGTGGTAGTACCAAATTTA+TGG | - | chr8.3:16118393-16118412 | MS.gene033167:CDS | 40.0% | |
| CTGATCCATCTTTCCCAATA+TGG | + | chr8.3:16119202-16119221 | None:intergenic | 40.0% | |
| GAAAAGCAATGGCATGCTTA+CGG | + | chr8.3:16119864-16119883 | None:intergenic | 40.0% | |
| GAATGAGTGGAAGAGGATTT+GGG | + | chr8.3:16118574-16118593 | None:intergenic | 40.0% | |
| GGATTTGCAATATTTGGACC+TGG | - | chr8.3:16119669-16119688 | MS.gene033167:intron | 40.0% | |
| TCAATCACAGTTGCACCATT+AGG | - | chr8.3:16119243-16119262 | MS.gene033167:intron | 40.0% | |
| TCTTCTGTAATTGTTTCCGG+TGG | - | chr8.3:16118376-16118395 | MS.gene033167:CDS | 40.0% | |
| TGCAAATCCCAAAACACCAA+TGG | + | chr8.3:16119658-16119677 | None:intergenic | 40.0% | |
| TTGAAGCAAAAATACCTGGG+GGG | + | chr8.3:16119761-16119780 | None:intergenic | 40.0% | |
| TTTGCAGCAATGGCCATATT+GGG | - | chr8.3:16119186-16119205 | MS.gene033167:CDS | 40.0% | |
| ! | AAACTGGATAGTTTGATGGC+TGG | + | chr8.3:16120056-16120075 | None:intergenic | 40.0% |
| ! | AATGAGGAGCTCATTTTAGG+AGG | + | chr8.3:16120242-16120261 | None:intergenic | 40.0% |
| ! | ACTGTGATTGAGAGTCCTTT+TGG | + | chr8.3:16119234-16119253 | None:intergenic | 40.0% |
| ! | TCTGGTATGTTTTGTATCCC+GGG | - | chr8.3:16119915-16119934 | MS.gene033167:intron | 40.0% |
| ! | TGCAATGAGGAGCTCATTTT+AGG | + | chr8.3:16120245-16120264 | None:intergenic | 40.0% |
| !! | ATGAGGAGCTCATTTTAGGA+GGG | + | chr8.3:16120241-16120260 | None:intergenic | 40.0% |
| AATGGCTGCACAACCTACTT+GGG | + | chr8.3:16119640-16119659 | None:intergenic | 45.0% | |
| ACTGAAGGAATGAGTGGAAG+AGG | + | chr8.3:16118581-16118600 | None:intergenic | 45.0% | |
| CGACACTGATACATTGACAC+CGG | - | chr8.3:16119396-16119415 | MS.gene033167:intron | 45.0% | |
| GGAATGAGTGGAAGAGGATT+TGG | + | chr8.3:16118575-16118594 | None:intergenic | 45.0% | |
| GTTCAATCGTTGGAACTGTC+CGG | - | chr8.3:16120105-16120124 | MS.gene033167:intron | 45.0% | |
| TGGAAGATATGGCAGAAGGA+TGG | + | chr8.3:16120401-16120420 | None:intergenic | 45.0% | |
| ! | CTGGTATGTTTTGTATCCCG+GGG | - | chr8.3:16119916-16119935 | MS.gene033167:intron | 45.0% |
| ! | TATTAAGGCATCAAGCGACG+TGG | - | chr8.3:16118516-16118535 | MS.gene033167:intron | 45.0% |
| !! | CATTTTAGGAGGGAGAGACA+TGG | + | chr8.3:16120231-16120250 | None:intergenic | 45.0% |
| !! | TGTGCAGCCATTGGTGTTTT+GGG | - | chr8.3:16119648-16119667 | MS.gene033167:intron | 45.0% |
| !! | TTGTGCAGCCATTGGTGTTT+TGG | - | chr8.3:16119647-16119666 | MS.gene033167:intron | 45.0% |
| AATAGTAGTACCCGGGCAGA+AGG | + | chr8.3:16119306-16119325 | None:intergenic | 50.0% | |
| ACATATCTCCGTTGCTAGCC+AGG | - | chr8.3:16120373-16120392 | MS.gene033167:CDS | 50.0% | |
| AGAGCAGACACTGCTCCTAA+TGG | + | chr8.3:16119261-16119280 | None:intergenic | 50.0% | |
| AGCAGCAACACTAGCACTCT+TGG | + | chr8.3:16119703-16119722 | None:intergenic | 50.0% | |
| AGGCCAGAGAATGTCACTGA+AGG | + | chr8.3:16118596-16118615 | None:intergenic | 50.0% | |
| AGGTTTCCAGTTCTCCCAGA+TGG | + | chr8.3:16118551-16118570 | None:intergenic | 50.0% | |
| ATAGTAGTACCCGGGCAGAA+GGG | + | chr8.3:16119305-16119324 | None:intergenic | 50.0% | |
| CAAGTAGGTTGTGCAGCCAT+TGG | - | chr8.3:16119639-16119658 | MS.gene033167:intron | 50.0% | |
| CAATGGCTGCACAACCTACT+TGG | + | chr8.3:16119641-16119660 | None:intergenic | 50.0% | |
| CATATCTCCGTTGCTAGCCA+GGG | - | chr8.3:16120374-16120393 | MS.gene033167:CDS | 50.0% | |
| TGAGTGGAAGAGGATTTGGG+AGG | + | chr8.3:16118571-16118590 | None:intergenic | 50.0% | |
| TTCCAGTTCTCCCAGATGGA+GGG | + | chr8.3:16118547-16118566 | None:intergenic | 50.0% | |
| TTTCCAGTTCTCCCAGATGG+AGG | + | chr8.3:16118548-16118567 | None:intergenic | 50.0% | |
| ! | TCTCTTGTTTGCCTCACCCT+CGG | - | chr8.3:16119278-16119297 | MS.gene033167:intron | 50.0% |
| !! | ATCAGGGGCATTTGCAGCAA+TGG | - | chr8.3:16119176-16119195 | MS.gene033167:CDS | 50.0% |
| GCACTCTTGGCTAGCAATCC+AGG | + | chr8.3:16119690-16119709 | None:intergenic | 55.0% | |
| TAGAATGCATCCTGCTGCCC+CGG | + | chr8.3:16119936-16119955 | None:intergenic | 55.0% | |
| TAGTAGTACCCGGGCAGAAG+GGG | + | chr8.3:16119304-16119323 | None:intergenic | 55.0% | |
| TATGGCAGAAGGATGGTCCC+TGG | + | chr8.3:16120394-16120413 | None:intergenic | 55.0% | |
| ! | GACATTCTCTGGCCTTCTGC+AGG | - | chr8.3:16118601-16118620 | MS.gene033167:intron | 55.0% |
| AGAATGCATCCTGCTGCCCC+GGG | + | chr8.3:16119935-16119954 | None:intergenic | 60.0% | |
| CACCCTCCATCTGGGAGAAC+TGG | - | chr8.3:16118542-16118561 | MS.gene033167:intron | 60.0% | |
| GGATGGTCCCTGGCTAGCAA+CGG | + | chr8.3:16120384-16120403 | None:intergenic | 60.0% | |
| GTTCTCCCAGATGGAGGGTG+AGG | + | chr8.3:16118542-16118561 | None:intergenic | 60.0% | |
| ! | ACTGACTCTGTTCACCCCCC+AGG | - | chr8.3:16119744-16119763 | MS.gene033167:intron | 60.0% |
| ! | GTTTTGTATCCCGGGGCAGC+AGG | - | chr8.3:16119923-16119942 | MS.gene033167:intron | 60.0% |
| ACGTGGCCTCACCCTCCATC+TGG | - | chr8.3:16118533-16118552 | MS.gene033167:intron | 65.0% | |
| CGTGGCCTCACCCTCCATCT+GGG | - | chr8.3:16118534-16118553 | MS.gene033167:intron | 65.0% | |
| ACCCGGGCAGAAGGGGCCGA+GGG | + | chr8.3:16119297-16119316 | None:intergenic | 75.0% | |
| ACCCTCGGCCCCTTCTGCCC+GGG | - | chr8.3:16119293-16119312 | MS.gene033167:intron | 75.0% | |
| CACCCTCGGCCCCTTCTGCC+CGG | - | chr8.3:16119292-16119311 | MS.gene033167:intron | 75.0% | |
| GGCAGAAGGGGCCGAGGGTG+AGG | + | chr8.3:16119292-16119311 | None:intergenic | 75.0% | |
| TACCCGGGCAGAAGGGGCCG+AGG | + | chr8.3:16119298-16119317 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16118364 | 16120464 | 16118364 | ID=MS.gene033167 |
| chr8.3 | mRNA | 16118364 | 16120464 | 16118364 | ID=MS.gene033167.t1;Parent=MS.gene033167 |
| chr8.3 | exon | 16120206 | 16120464 | 16120206 | ID=MS.gene033167.t1.exon1;Parent=MS.gene033167.t1 |
| chr8.3 | CDS | 16120206 | 16120464 | 16120206 | ID=cds.MS.gene033167.t1;Parent=MS.gene033167.t1 |
| chr8.3 | exon | 16119514 | 16119647 | 16119514 | ID=MS.gene033167.t1.exon2;Parent=MS.gene033167.t1 |
| chr8.3 | CDS | 16119514 | 16119647 | 16119514 | ID=cds.MS.gene033167.t1;Parent=MS.gene033167.t1 |
| chr8.3 | exon | 16119063 | 16119210 | 16119063 | ID=MS.gene033167.t1.exon3;Parent=MS.gene033167.t1 |
| chr8.3 | CDS | 16119063 | 16119210 | 16119063 | ID=cds.MS.gene033167.t1;Parent=MS.gene033167.t1 |
| chr8.3 | exon | 16118910 | 16118967 | 16118910 | ID=MS.gene033167.t1.exon4;Parent=MS.gene033167.t1 |
| chr8.3 | CDS | 16118910 | 16118967 | 16118910 | ID=cds.MS.gene033167.t1;Parent=MS.gene033167.t1 |
| chr8.3 | exon | 16118364 | 16118433 | 16118364 | ID=MS.gene033167.t1.exon5;Parent=MS.gene033167.t1 |
| chr8.3 | CDS | 16118364 | 16118433 | 16118364 | ID=cds.MS.gene033167.t1;Parent=MS.gene033167.t1 |
| Gene Sequence |
| Protein sequence |
