AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002011

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002011.t1 MTR_2g005570 98.565 418 6 0 1 418 1 418 0.0 854
MS.gene002011.t1 MTR_2g005570 98.325 418 7 0 1 418 1 418 0.0 852
MS.gene002011.t1 MTR_3g058940 89.021 419 42 3 3 418 2 419 0.0 769
MS.gene002011.t1 MTR_4g134770 83.055 419 67 3 3 418 2 419 0.0 678
MS.gene002011.t1 MTR_4g134770 84.896 384 55 2 38 418 1 384 0.0 637
MS.gene002011.t1 MTR_3g064700 30.233 172 107 6 42 203 40 208 3.29e-13 68.9
MS.gene002011.t1 MTR_1g088850 27.014 211 125 5 13 205 11 210 8.45e-12 64.7
MS.gene002011.t1 MTR_3g450790 25.714 175 113 4 42 204 39 208 1.08e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002011.t1 AT1G09640 76.555 418 91 4 3 418 2 414 0.0 641
MS.gene002011.t1 AT1G57720 74.341 417 101 5 3 418 2 413 0.0 627
MS.gene002011.t1 AT1G57720 74.341 417 101 5 3 418 2 413 0.0 627
MS.gene002011.t1 AT1G09640 69.608 204 60 2 3 205 2 204 7.07e-97 291
MS.gene002011.t1 AT1G09640 88.732 71 7 1 349 418 195 265 1.00e-35 132
MS.gene002011.t1 AT2G30870 30.075 133 84 3 38 162 35 166 7.78e-13 67.8
MS.gene002011.t1 AT2G30860 29.371 143 94 2 27 162 24 166 1.70e-12 67.0
MS.gene002011.t1 AT3G62760 28.141 199 128 6 16 203 14 208 2.43e-12 66.6
MS.gene002011.t1 AT5G17220 28.655 171 113 3 42 204 40 209 1.30e-11 64.3

Find 117 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTAATATCTTGCGGAAAT+TGG 0.099297 2.3:+76152798 None:intergenic
CTTTGGTTCATCTTTGGTTT+TGG 0.104573 2.3:+76152708 None:intergenic
CATTCATCCATGATAAATTT+TGG 0.113279 2.3:+76152088 None:intergenic
GTGTTTGATTTGCAGGATTC+TGG 0.117283 2.3:-76152324 MS.gene002011:intron
TTGGGTCACAACAATTTATT+TGG 0.142700 2.3:-76154089 MS.gene002011:CDS
CACTTTCTTTGGTTCATCTT+TGG 0.187717 2.3:+76152702 None:intergenic
TCCTCCAAGTAAGATGATTT+TGG 0.192577 2.3:-76152596 MS.gene002011:CDS
TGGATCAGAGCCTCCATTTA+AGG 0.199866 2.3:-76152146 MS.gene002011:CDS
TTTGGAAAGATGCTTATAAT+TGG 0.211636 2.3:-76152166 MS.gene002011:CDS
TCTGATTTAGCCACTTTCTT+TGG 0.237195 2.3:+76152691 None:intergenic
AGGATTCTTGGGTTTGGGCT+TGG 0.251916 2.3:+76152630 None:intergenic
ACAACATCCAACTTGTATAT+TGG 0.252389 2.3:-76152901 MS.gene002011:CDS
CTCCTCTTCAACTTCTACTT+TGG 0.254637 2.3:+76152657 None:intergenic
GGATTCTTGGGTTTGGGCTT+GGG 0.262060 2.3:+76152631 None:intergenic
CCCAATTTCCGCAAGATATT+AGG 0.262248 2.3:-76152799 MS.gene002011:CDS
TTTCTTTCAGGTTCCGGTCT+TGG 0.279784 2.3:-76154260 MS.gene002011:intron
CACAACCCCTTCACCTTAAA+TGG 0.280661 2.3:+76152133 None:intergenic
CTGGCTCGCAAGTATGCTTT+TGG 0.282861 2.3:-76152184 MS.gene002011:CDS
ATTTGAGGGAGAGGCTCTTT+TGG 0.299039 2.3:-76151972 MS.gene002011:CDS
TTTATCAACATGAACCCTAT+TGG 0.305444 2.3:-76154363 MS.gene002011:CDS
TCCTCTTCAACTTCTACTTT+GGG 0.315309 2.3:+76152658 None:intergenic
TCAAGAGGATTCTTGGGTTT+GGG 0.320569 2.3:+76152625 None:intergenic
GTCAAGAGGATTCTTGGGTT+TGG 0.321823 2.3:+76152624 None:intergenic
ACAATACCTACCTTTCCAAT+AGG 0.324030 2.3:+76154348 None:intergenic
AAGAAGGTCAAGAGGATTCT+TGG 0.332287 2.3:+76152618 None:intergenic
GTTGGAAGCCATGGCGGCCT+TGG 0.343555 2.3:-76154598 None:intergenic
TTGTGACCCTGAACAAGGTT+GGG 0.356898 2.3:-76152228 MS.gene002011:CDS
CAGGTACAACTTCATGATAT+TGG 0.358542 2.3:+76153548 None:intergenic
CAATACCTACCTTTCCAATA+GGG 0.369972 2.3:+76154349 None:intergenic
CCTAATATCTTGCGGAAATT+GGG 0.374931 2.3:+76152799 None:intergenic
TGGATCATCTCTTATTGATC+AGG 0.389041 2.3:-76154069 MS.gene002011:intron
CTTTCCTGCAGTTGCCCGAT+TGG 0.389371 2.3:-76154108 MS.gene002011:intron
CTCATGTTGAGAGATACTTT+TGG 0.389806 2.3:-76152837 MS.gene002011:CDS
CATTTAAGGTGAAGGGGTTG+TGG 0.403530 2.3:-76152132 MS.gene002011:CDS
TGTTTGATTTGCAGGATTCT+GGG 0.410419 2.3:-76152323 MS.gene002011:intron
GAAACACCCATCTGAAAATC+AGG 0.417209 2.3:+76154402 None:intergenic
TTTCCTGCAGTTGCCCGATT+GGG 0.425435 2.3:-76154107 MS.gene002011:intron
AGAAGGTCAAGAGGATTCTT+GGG 0.433602 2.3:+76152619 None:intergenic
AGAGATTCCAAAATTTATCA+TGG 0.435888 2.3:-76152095 MS.gene002011:CDS
TATTGGTTTCGCTAAACTCT+TGG 0.436845 2.3:-76152884 MS.gene002011:CDS
TTTGTGACCCTGAACAAGGT+TGG 0.442505 2.3:-76152229 MS.gene002011:CDS
ATCCAGAGGGATACTCTCTC+TGG 0.443260 2.3:-76152291 MS.gene002011:CDS
TAAATTGTTGTGACCCAATC+GGG 0.451408 2.3:+76154094 None:intergenic
GGGTTCATGTTGATAAATTG+AGG 0.453213 2.3:+76154369 None:intergenic
GACCTCACGGAAGTTCCTCT+TGG 0.467302 2.3:+76152546 None:intergenic
AAAAGAGCCTCTCCCTCAAA+TGG 0.468428 2.3:+76151974 None:intergenic
ATTTCTGCAGAGGATGGATC+TGG 0.469227 2.3:-76152203 MS.gene002011:CDS
TAGCCTCAGTCTGCTTAACC+TGG 0.481958 2.3:+76152776 None:intergenic
TCATCCAAAATCATCTTACT+TGG 0.482283 2.3:+76152592 None:intergenic
ATAAATTGTTGTGACCCAAT+CGG 0.483459 2.3:+76154093 None:intergenic
CTCTCAAAGACAGGACCATC+AGG 0.483996 2.3:+76154232 None:intergenic
TGCTGAACCATTTGAGGGAG+AGG 0.491080 2.3:-76151981 MS.gene002011:CDS
TCCAAAATCATCTTACTTGG+AGG 0.494526 2.3:+76152595 None:intergenic
TGTGACCCTGAACAAGGTTG+GGG 0.494527 2.3:-76152227 MS.gene002011:CDS
GAAGATGCTGAACCATTTGA+GGG 0.499250 2.3:-76151986 MS.gene002011:CDS
ATCTGCTAAGCAGCAGCCTA+AGG 0.499718 2.3:-76152740 MS.gene002011:CDS
TGAAGATGCTGAACCATTTG+AGG 0.504616 2.3:-76151987 MS.gene002011:CDS
TTTCCGCAAGATATTAGGCC+AGG 0.506830 2.3:-76152794 MS.gene002011:CDS
GAGCCTCCATTTAAGGTGAA+GGG 0.508653 2.3:-76152139 MS.gene002011:CDS
GGTTCATGTTGATAAATTGA+GGG 0.510474 2.3:+76154370 None:intergenic
TGCTGCTTAGCAGATGGAAT+AGG 0.510683 2.3:+76152748 None:intergenic
ATATCTTGCGGAAATTGGGC+TGG 0.518090 2.3:+76152803 None:intergenic
TCATCTTACTTGGAGGAAGA+AGG 0.519375 2.3:+76152602 None:intergenic
TTCCGTGAGGTCGCAATCAA+AGG 0.519400 2.3:-76152535 MS.gene002011:intron
CTCACAATACCTACTTGGTC+GGG 0.524651 2.3:-76152951 MS.gene002011:CDS
AGCGAAACCAATATACAAGT+TGG 0.525950 2.3:+76152894 None:intergenic
CAAAGATGAACCAAAGAAAG+TGG 0.527852 2.3:-76152701 MS.gene002011:CDS
CGGCATATCCAAGTCTTGGC+AGG 0.531508 2.3:+76153529 None:intergenic
TTCGCTCAAGAGAGCACTTG+AGG 0.540956 2.3:-76152992 MS.gene002011:CDS
AACCAGAGAGAGTATCCCTC+TGG 0.541067 2.3:+76152289 None:intergenic
GCTCACAATACCTACTTGGT+CGG 0.543458 2.3:-76152952 MS.gene002011:CDS
TAGGCGGCATATCCAAGTCT+TGG 0.546133 2.3:+76153525 None:intergenic
TACCTTTGATTGCGACCTCA+CGG 0.549156 2.3:+76152533 None:intergenic
AGTAATGCCATTGCTCGCTA+TGG 0.549245 2.3:-76154211 MS.gene002011:intron
ACAACTTACTGGAGGAAAGT+AGG 0.550453 2.3:+76153506 None:intergenic
TTAGGCTGCTGCTTAGCAGA+TGG 0.550675 2.3:+76152742 None:intergenic
GCCCAAAGTAGAAGTTGAAG+AGG 0.556725 2.3:-76152659 MS.gene002011:CDS
AGCATCTTCAATCATCTGAC+TGG 0.558457 2.3:+76152000 None:intergenic
CTGATTGCTGCTGAATATGT+TGG 0.559330 2.3:-76154444 MS.gene002011:CDS
AAGTTGTACCTGCCAAGACT+TGG 0.560946 2.3:-76153537 MS.gene002011:CDS
AGAGCCTCCATTTAAGGTGA+AGG 0.562476 2.3:-76152140 MS.gene002011:CDS
TCTTGCTCACAATACCTACT+TGG 0.565718 2.3:-76152956 MS.gene002011:CDS
AATCAATCCACTGGTCAATG+TGG 0.571450 2.3:+76153592 None:intergenic
CAAAGTAGAAGTTGAAGAGG+AGG 0.579683 2.3:-76152656 MS.gene002011:CDS
TATACTAACCAAGGCCGCCA+TGG 0.580060 2.3:+76154590 None:intergenic
GACTCTACTCTAACACCAAG+AGG 0.583602 2.3:-76152561 MS.gene002011:CDS
CCATCAGGAGTTTCCAAGAC+CGG 0.583824 2.3:+76154247 None:intergenic
ATCAATCCACTGGTCAATGT+GGG 0.585165 2.3:+76153593 None:intergenic
CTTGGAGGAAGAAGGTCAAG+AGG 0.586796 2.3:+76152610 None:intergenic
CAGCATACCATAGCGAGCAA+TGG 0.587213 2.3:+76154204 None:intergenic
TTCATCAGAGATGTCAACCT+TGG 0.587509 2.3:+76152039 None:intergenic
TTCCGTTGTTGGGAGCGTGA+AGG 0.588156 2.3:+76154487 None:intergenic
CCGGTCTTGGAAACTCCTGA+TGG 0.589673 2.3:-76154247 MS.gene002011:CDS
GTTCATGTTGATAAATTGAG+GGG 0.590470 2.3:+76154371 None:intergenic
ATGGCATTACTCTCAAAGAC+AGG 0.591005 2.3:+76154223 None:intergenic
AGCCTCCATTTAAGGTGAAG+GGG 0.592740 2.3:-76152138 MS.gene002011:CDS
CAACATGAACCCTATTGGAA+AGG 0.595932 2.3:-76154358 MS.gene002011:intron
CTGGGACATGTATGATCCAG+AGG 0.600612 2.3:-76152305 MS.gene002011:CDS
ATCCTTCACGCTCCCAACAA+CGG 0.601253 2.3:-76154489 MS.gene002011:CDS
TTCAGGCCCACATTGACCAG+TGG 0.607287 2.3:-76153599 MS.gene002011:intron
TGCTTAGCAGATGGAATAGG+TGG 0.613551 2.3:+76152751 None:intergenic
CAAAAGTATCTCTCAACATG+AGG 0.614280 2.3:+76152838 None:intergenic
ATGTTGTTATAATGTCAGCA+AGG 0.622569 2.3:+76152917 None:intergenic
TAACCTGGCCTAATATCTTG+CGG 0.626332 2.3:+76152791 None:intergenic
TGTTGTTATAATGTCAGCAA+GGG 0.629008 2.3:+76152918 None:intergenic
CATGGATGAATGCTATGACA+TGG 0.631015 2.3:-76152077 MS.gene002011:CDS
GAAATTGGGCTGGTTGACCA+AGG 0.645258 2.3:+76152813 None:intergenic
GTGACCCTGAACAAGGTTGG+GGG 0.650105 2.3:-76152226 MS.gene002011:CDS
AACCCCTTCACCTTAAATGG+AGG 0.653598 2.3:+76152136 None:intergenic
ATGACATGGAGCTCTATGAG+TGG 0.662196 2.3:-76152063 MS.gene002011:CDS
TGGGACATGTATGATCCAGA+GGG 0.668464 2.3:-76152304 MS.gene002011:CDS
AACAGAATGCCCGACCAAGT+AGG 0.668821 2.3:+76152942 None:intergenic
CTCAACATGAGGAAACTCTG+AGG 0.714280 2.3:+76152849 None:intergenic
AGGCCAGGTTAAGCAGACTG+AGG 0.721460 2.3:-76152779 MS.gene002011:CDS
GGAGCTCTATGAGTGGACCA+AGG 0.731462 2.3:-76152056 MS.gene002011:CDS
ACTTACTGGAGGAAAGTAGG+CGG 0.737958 2.3:+76153509 None:intergenic
CACCAAGAGGAACTTCCGTG+AGG 0.751991 2.3:-76152548 MS.gene002011:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATAGATTTAATCT+TGG + chr2.3:76152814-76152833 None:intergenic 10.0%
!!! AAGATTAAATCTATTTTAAT+TGG - chr2.3:76152813-76152832 MS.gene002011:CDS 10.0%
!! ACCATATAATAATAAAACAA+AGG - chr2.3:76152508-76152527 MS.gene002011:intron 15.0%
!! CAATTATATAATATTTGAGT+TGG - chr2.3:76153133-76153152 MS.gene002011:intron 15.0%
!! TATTGAAAAAAAAAACAACA+TGG + chr2.3:76153063-76153082 None:intergenic 15.0%
!!! TATCCTTTTTGATATTTATT+GGG - chr2.3:76152768-76152787 MS.gene002011:CDS 15.0%
!! TAGACACAAATTTCAAAAAA+GGG + chr2.3:76153279-76153298 None:intergenic 20.0%
!! TATATATAAACCACATACAA+GGG + chr2.3:76152848-76152867 None:intergenic 20.0%
!! TGAAAAAAAAAAGAAACTAC+AGG + chr2.3:76154046-76154065 None:intergenic 20.0%
!! TTAGACACAAATTTCAAAAA+AGG + chr2.3:76153280-76153299 None:intergenic 20.0%
!! TTTCCCAATAAATATCAAAA+AGG + chr2.3:76152774-76152793 None:intergenic 20.0%
!!! AATATACTATTCTCTGTTTT+TGG - chr2.3:76154113-76154132 MS.gene002011:intron 20.0%
!!! GCCTTTGTTTTATTATTATA+TGG + chr2.3:76152512-76152531 None:intergenic 20.0%
!!! GTATCCTTTTTGATATTTAT+TGG - chr2.3:76152767-76152786 MS.gene002011:CDS 20.0%
!!! TATTTGAATTTTGTTGTTTC+AGG - chr2.3:76152924-76152943 MS.gene002011:CDS 20.0%
!!! TTTTCTGAAATCAATTAGTT+TGG - chr2.3:76153175-76153194 MS.gene002011:intron 20.0%
! AAAACATTTGTGAATAACTG+AGG + chr2.3:76153159-76153178 None:intergenic 25.0%
! AAGGGAAAATATTCAGTAAA+AGG + chr2.3:76153484-76153503 None:intergenic 25.0%
! AGAGAATAGTATATTTCCAA+AGG + chr2.3:76154108-76154127 None:intergenic 25.0%
! AGAGATTCCAAAATTTATCA+TGG - chr2.3:76154445-76154464 MS.gene002011:CDS 25.0%
! AGGGAAAATATTCAGTAAAA+GGG + chr2.3:76153483-76153502 None:intergenic 25.0%
! CTATATATAAACCACATACA+AGG + chr2.3:76152849-76152868 None:intergenic 25.0%
! GTATGTGGTTTATATATAGA+GGG - chr2.3:76152850-76152869 MS.gene002011:CDS 25.0%
! TAATAATCAACAACAAGTAG+TGG + chr2.3:76152015-76152034 None:intergenic 25.0%
! TATAATTGCTATCAATACTC+AGG + chr2.3:76153121-76153140 None:intergenic 25.0%
! TCAGACACAAATTTCAAAAA+GGG + chr2.3:76153502-76153521 None:intergenic 25.0%
! TGAAATTTGTGTCTAAATGA+AGG - chr2.3:76153284-76153303 MS.gene002011:intron 25.0%
! TGAAATTTGTGTCTGAATAA+AGG - chr2.3:76153506-76153525 MS.gene002011:intron 25.0%
! TGTATGTGGTTTATATATAG+AGG - chr2.3:76152849-76152868 MS.gene002011:CDS 25.0%
! TTCAGACACAAATTTCAAAA+AGG + chr2.3:76153503-76153522 None:intergenic 25.0%
! TTTGGAAAGATGCTTATAAT+TGG - chr2.3:76154374-76154393 MS.gene002011:CDS 25.0%
!! ATCTAAACTAGAATCTTTTC+TGG + chr2.3:76152653-76152672 None:intergenic 25.0%
!! CATTCATCCATGATAAATTT+TGG + chr2.3:76154455-76154474 None:intergenic 25.0%
!! CTTGCTGAATATTTTCAAAA+GGG + chr2.3:76153355-76153374 None:intergenic 25.0%
!! TTGCTGAATATTTTCAAAAG+GGG + chr2.3:76153354-76153373 None:intergenic 25.0%
!!! ACTTGCTGAATATTTTCAAA+AGG + chr2.3:76153356-76153375 None:intergenic 25.0%
AATCAGAGAAAAAGTAAGTG+TGG + chr2.3:76152688-76152707 None:intergenic 30.0%
ACAACATCCAACTTGTATAT+TGG - chr2.3:76153639-76153658 MS.gene002011:intron 30.0%
ATAAATTGTTGTGACCCAAT+CGG + chr2.3:76152450-76152469 None:intergenic 30.0%
ATAGATTTAATCTTGGCAGT+TGG + chr2.3:76152807-76152826 None:intergenic 30.0%
ATGTTGTTATAATGTCAGCA+AGG + chr2.3:76153626-76153645 None:intergenic 30.0%
ATTCCTTCTTTCTTTCTTTC+AGG - chr2.3:76152268-76152287 MS.gene002011:CDS 30.0%
GGGAAAATATTCAGTAAAAG+GGG + chr2.3:76153482-76153501 None:intergenic 30.0%
TATAGAGGGTAAATTTGCAA+AGG - chr2.3:76152864-76152883 MS.gene002011:CDS 30.0%
TCATCCAAAATCATCTTACT+TGG + chr2.3:76153951-76153970 None:intergenic 30.0%
TGATTGTAGCTTATATCCTT+TGG - chr2.3:76154089-76154108 MS.gene002011:CDS 30.0%
TGTTGTTATAATGTCAGCAA+GGG + chr2.3:76153625-76153644 None:intergenic 30.0%
TTGGGTCACAACAATTTATT+TGG - chr2.3:76152451-76152470 MS.gene002011:intron 30.0%
TTTATCAACATGAACCCTAT+TGG - chr2.3:76152177-76152196 MS.gene002011:CDS 30.0%
! ATCTCTTTTAACATCTCAGT+TGG - chr2.3:76153417-76153436 MS.gene002011:intron 30.0%
! GGTTCATGTTGATAAATTGA+GGG + chr2.3:76152173-76152192 None:intergenic 30.0%
! GTTCATGTTGATAAATTGAG+GGG + chr2.3:76152172-76152191 None:intergenic 30.0%
! TGCTGAATATTTTCAAAAGG+GGG + chr2.3:76153353-76153372 None:intergenic 30.0%
!! AACATTTTTGTTTCCGTTGT+TGG + chr2.3:76152067-76152086 None:intergenic 30.0%
!! ACATTTTTGTTTCCGTTGTT+GGG + chr2.3:76152066-76152085 None:intergenic 30.0%
!!! TTTGGTTCATCTTTGGTTTT+GGG + chr2.3:76153834-76153853 None:intergenic 30.0%
AATAACTTCCATGAGAACAC+AGG + chr2.3:76152908-76152927 None:intergenic 35.0%
ACAATACCTACCTTTCCAAT+AGG + chr2.3:76152195-76152214 None:intergenic 35.0%
AGCGAAACCAATATACAAGT+TGG + chr2.3:76153649-76153668 None:intergenic 35.0%
ATAACTTCCATGAGAACACA+GGG + chr2.3:76152907-76152926 None:intergenic 35.0%
ATAATAAAACAAAGGCCGTG+TGG - chr2.3:76152516-76152535 MS.gene002011:intron 35.0%
ATCTCTTCTAACATCTCAGA+TGG - chr2.3:76153215-76153234 MS.gene002011:intron 35.0%
ATTTAATCTTGGCAGTTGGT+TGG + chr2.3:76152803-76152822 None:intergenic 35.0%
CAAAGATGAACCAAAGAAAG+TGG - chr2.3:76153839-76153858 MS.gene002011:intron 35.0%
CAATACCTACCTTTCCAATA+GGG + chr2.3:76152194-76152213 None:intergenic 35.0%
CAGGTACAACTTCATGATAT+TGG + chr2.3:76152995-76153014 None:intergenic 35.0%
CCTAATATCTTGCGGAAATT+GGG + chr2.3:76153744-76153763 None:intergenic 35.0%
GAACCTGAAAGAAAGAAAGA+AGG + chr2.3:76152274-76152293 None:intergenic 35.0%
GAGAAGAAAAATCAATCCAC+TGG + chr2.3:76152960-76152979 None:intergenic 35.0%
GAGATGTTAGAAGAGATACA+TGG + chr2.3:76153212-76153231 None:intergenic 35.0%
GTGAGTGAATATACTAACCA+AGG + chr2.3:76151962-76151981 None:intergenic 35.0%
TAAATTGTTGTGACCCAATC+GGG + chr2.3:76152449-76152468 None:intergenic 35.0%
TCCAAAATCATCTTACTTGG+AGG + chr2.3:76153948-76153967 None:intergenic 35.0%
TCCTCTTCAACTTCTACTTT+GGG + chr2.3:76153885-76153904 None:intergenic 35.0%
TGGATCATCTCTTATTGATC+AGG - chr2.3:76152471-76152490 MS.gene002011:intron 35.0%
TTGTGTCTGAATAAAGGTAG+AGG - chr2.3:76153512-76153531 MS.gene002011:intron 35.0%
TTTGTGTCTAAATGAAGGAC+TGG - chr2.3:76153289-76153308 MS.gene002011:intron 35.0%
! AACTTCTACTTTGGGCTTTT+CGG + chr2.3:76153877-76153896 None:intergenic 35.0%
! AGAAGAGATACATGGATTGT+TGG + chr2.3:76153204-76153223 None:intergenic 35.0%
! CACTTTCTTTGGTTCATCTT+TGG + chr2.3:76153841-76153860 None:intergenic 35.0%
! CTCATGTTGAGAGATACTTT+TGG - chr2.3:76153703-76153722 MS.gene002011:intron 35.0%
! GCTGAATATTTTCAAAAGGG+GGG + chr2.3:76153352-76153371 None:intergenic 35.0%
! GGGTTCATGTTGATAAATTG+AGG + chr2.3:76152174-76152193 None:intergenic 35.0%
! GTAAGATGATTTTGGATGAC+TGG - chr2.3:76153952-76153971 MS.gene002011:intron 35.0%
! TCCTCCAAGTAAGATGATTT+TGG - chr2.3:76153944-76153963 MS.gene002011:intron 35.0%
! TCTGATTTAGCCACTTTCTT+TGG + chr2.3:76153852-76153871 None:intergenic 35.0%
! TTCAAGCTTTTGTAGCTTCT+AGG - chr2.3:76154062-76154081 MS.gene002011:intron 35.0%
! TTGACTCCTGATTTTCAGAT+GGG - chr2.3:76152132-76152151 MS.gene002011:CDS 35.0%
!! AATTCCTGTGTTTGATTTGC+AGG - chr2.3:76154209-76154228 MS.gene002011:intron 35.0%
!! ATTGACTCCTGATTTTCAGA+TGG - chr2.3:76152131-76152150 MS.gene002011:CDS 35.0%
!! CAAAAGTATCTCTCAACATG+AGG + chr2.3:76153705-76153724 None:intergenic 35.0%
!! CTTTGGTTCATCTTTGGTTT+TGG + chr2.3:76153835-76153854 None:intergenic 35.0%
!! GATAAATTGAGGGGTTTTGT+TGG + chr2.3:76152163-76152182 None:intergenic 35.0%
!! GTGGATTGATTTTTCTTCTC+TGG - chr2.3:76152960-76152979 MS.gene002011:CDS 35.0%
!! TATTGGTTTCGCTAAACTCT+TGG - chr2.3:76153656-76153675 MS.gene002011:intron 35.0%
!! TCTTTCTTTCTTTCAGGTTC+CGG - chr2.3:76152274-76152293 MS.gene002011:CDS 35.0%
!! TGTTTGATTTGCAGGATTCT+GGG - chr2.3:76154217-76154236 MS.gene002011:CDS 35.0%
!!! ATTTTGGAATCTCTTGTCCA+CGG + chr2.3:76154439-76154458 None:intergenic 35.0%
AAGAAGGTCAAGAGGATTCT+TGG + chr2.3:76153925-76153944 None:intergenic 40.0%
AATCAATCCACTGGTCAATG+TGG + chr2.3:76152951-76152970 None:intergenic 40.0%
ACAACTTACTGGAGGAAAGT+AGG + chr2.3:76153037-76153056 None:intergenic 40.0%
AGAAGGTCAAGAGGATTCTT+GGG + chr2.3:76153924-76153943 None:intergenic 40.0%
AGCATCTTCAATCATCTGAC+TGG + chr2.3:76154543-76154562 None:intergenic 40.0%
ATCAATCCACTGGTCAATGT+GGG + chr2.3:76152950-76152969 None:intergenic 40.0%
ATGAACCCTATTGGAAAGGT+AGG - chr2.3:76152186-76152205 MS.gene002011:CDS 40.0%
ATGGCATTACTCTCAAAGAC+AGG + chr2.3:76152320-76152339 None:intergenic 40.0%
CAAAGTAGAAGTTGAAGAGG+AGG - chr2.3:76153884-76153903 MS.gene002011:intron 40.0%
CAACATGAACCCTATTGGAA+AGG - chr2.3:76152182-76152201 MS.gene002011:CDS 40.0%
CATGGATGAATGCTATGACA+TGG - chr2.3:76154463-76154482 MS.gene002011:CDS 40.0%
CCCAATTTCCGCAAGATATT+AGG - chr2.3:76153741-76153760 MS.gene002011:intron 40.0%
CTCCTCTTCAACTTCTACTT+TGG + chr2.3:76153886-76153905 None:intergenic 40.0%
CTGATTGCTGCTGAATATGT+TGG - chr2.3:76152096-76152115 MS.gene002011:CDS 40.0%
GAAACACCCATCTGAAAATC+AGG + chr2.3:76152141-76152160 None:intergenic 40.0%
GAAGATGCTGAACCATTTGA+GGG - chr2.3:76154554-76154573 MS.gene002011:intron 40.0%
GAATCCTGCAAATCAAACAC+AGG + chr2.3:76154216-76154235 None:intergenic 40.0%
GCCTAATATCTTGCGGAAAT+TGG + chr2.3:76153745-76153764 None:intergenic 40.0%
TAACCTGGCCTAATATCTTG+CGG + chr2.3:76153752-76153771 None:intergenic 40.0%
TCAAGAGGATTCTTGGGTTT+GGG + chr2.3:76153918-76153937 None:intergenic 40.0%
TCATCTTACTTGGAGGAAGA+AGG + chr2.3:76153941-76153960 None:intergenic 40.0%
TCTTGCTCACAATACCTACT+TGG - chr2.3:76153584-76153603 MS.gene002011:CDS 40.0%
TGAAGATGCTGAACCATTTG+AGG - chr2.3:76154553-76154572 MS.gene002011:intron 40.0%
TTCAGTAAAAGGGGAAGAGT+TGG + chr2.3:76153473-76153492 None:intergenic 40.0%
TTCATCAGAGATGTCAACCT+TGG + chr2.3:76154504-76154523 None:intergenic 40.0%
TTGAAAACCAAGAGACCACA+CGG + chr2.3:76152534-76152553 None:intergenic 40.0%
! ACTTCTACTTTGGGCTTTTC+GGG + chr2.3:76153876-76153895 None:intergenic 40.0%
! CACAGGGATATGCAATCTTT+TGG + chr2.3:76152891-76152910 None:intergenic 40.0%
! TATTTTCAAAAGGGGGGAGT+TGG + chr2.3:76153346-76153365 None:intergenic 40.0%
! TGAGAGATACTTTTGGACCT+TGG - chr2.3:76153710-76153729 MS.gene002011:intron 40.0%
! TTCTTTTGTGACCCTGAACA+AGG - chr2.3:76154307-76154326 MS.gene002011:intron 40.0%
!! GTGTTTGATTTGCAGGATTC+TGG - chr2.3:76154216-76154235 MS.gene002011:CDS 40.0%
AAAAGAGCCTCTCCCTCAAA+TGG + chr2.3:76154569-76154588 None:intergenic 45.0%
AAATCCCCCAACCTTGTTCA+GGG + chr2.3:76154321-76154340 None:intergenic 45.0%
AACCCCTTCACCTTAAATGG+AGG + chr2.3:76154407-76154426 None:intergenic 45.0%
AAGTTGTACCTGCCAAGACT+TGG - chr2.3:76153003-76153022 MS.gene002011:CDS 45.0%
ACTTACTGGAGGAAAGTAGG+CGG + chr2.3:76153034-76153053 None:intergenic 45.0%
AGTAATGCCATTGCTCGCTA+TGG - chr2.3:76152329-76152348 MS.gene002011:intron 45.0%
ATATCTTGCGGAAATTGGGC+TGG + chr2.3:76153740-76153759 None:intergenic 45.0%
ATGACATGGAGCTCTATGAG+TGG - chr2.3:76154477-76154496 MS.gene002011:CDS 45.0%
ATTTCTGCAGAGGATGGATC+TGG - chr2.3:76154337-76154356 MS.gene002011:intron 45.0%
CAACATGGCACACAACTTAC+TGG + chr2.3:76153048-76153067 None:intergenic 45.0%
CACAACCCCTTCACCTTAAA+TGG + chr2.3:76154410-76154429 None:intergenic 45.0%
CTCAACATGAGGAAACTCTG+AGG + chr2.3:76153694-76153713 None:intergenic 45.0%
CTCACAATACCTACTTGGTC+GGG - chr2.3:76153589-76153608 MS.gene002011:CDS 45.0%
GACTCTACTCTAACACCAAG+AGG - chr2.3:76153979-76153998 MS.gene002011:intron 45.0%
GCCCAAAGTAGAAGTTGAAG+AGG - chr2.3:76153881-76153900 MS.gene002011:intron 45.0%
GCTCACAATACCTACTTGGT+CGG - chr2.3:76153588-76153607 MS.gene002011:CDS 45.0%
GTCAAGAGGATTCTTGGGTT+TGG + chr2.3:76153919-76153938 None:intergenic 45.0%
TACCTTTGATTGCGACCTCA+CGG + chr2.3:76154010-76154029 None:intergenic 45.0%
TGCATATCCCTGTGTTCTCA+TGG - chr2.3:76152897-76152916 MS.gene002011:CDS 45.0%
TGCTTAGCAGATGGAATAGG+TGG + chr2.3:76153792-76153811 None:intergenic 45.0%
TGGATCAGAGCCTCCATTTA+AGG - chr2.3:76154394-76154413 MS.gene002011:CDS 45.0%
TGGGACATGTATGATCCAGA+GGG - chr2.3:76154236-76154255 MS.gene002011:CDS 45.0%
TTGTGACCCTGAACAAGGTT+GGG - chr2.3:76154312-76154331 MS.gene002011:intron 45.0%
TTTCCGCAAGATATTAGGCC+AGG - chr2.3:76153746-76153765 MS.gene002011:intron 45.0%
TTTGTGACCCTGAACAAGGT+TGG - chr2.3:76154311-76154330 MS.gene002011:intron 45.0%
! AGAGCCTCCATTTAAGGTGA+AGG - chr2.3:76154400-76154419 MS.gene002011:CDS 45.0%
! AGCCTCCATTTAAGGTGAAG+GGG - chr2.3:76154402-76154421 MS.gene002011:CDS 45.0%
! ATTTGAGGGAGAGGCTCTTT+TGG - chr2.3:76154568-76154587 MS.gene002011:intron 45.0%
! CATTTAAGGTGAAGGGGTTG+TGG - chr2.3:76154408-76154427 MS.gene002011:CDS 45.0%
! GAGCCTCCATTTAAGGTGAA+GGG - chr2.3:76154401-76154420 MS.gene002011:CDS 45.0%
! GTTGAAGCATCCCTTGTATG+TGG - chr2.3:76152835-76152854 MS.gene002011:CDS 45.0%
! TGCTGCTTAGCAGATGGAAT+AGG + chr2.3:76153795-76153814 None:intergenic 45.0%
!! GGTCGCAATCAAAGGTATTG+TGG - chr2.3:76154013-76154032 MS.gene002011:intron 45.0%
!! GTTTTGGGCTTAGACTCCTT+AGG + chr2.3:76153819-76153838 None:intergenic 45.0%
!! TTTCTTTCAGGTTCCGGTCT+TGG - chr2.3:76152280-76152299 MS.gene002011:CDS 45.0%
AACAGAATGCCCGACCAAGT+AGG + chr2.3:76153601-76153620 None:intergenic 50.0%
AGGATTCTTGGGTTTGGGCT+TGG + chr2.3:76153913-76153932 None:intergenic 50.0%
ATCCAGAGGGATACTCTCTC+TGG - chr2.3:76154249-76154268 MS.gene002011:CDS 50.0%
ATCCTTCACGCTCCCAACAA+CGG - chr2.3:76152051-76152070 MS.gene002011:CDS 50.0%
ATCTGCTAAGCAGCAGCCTA+AGG - chr2.3:76153800-76153819 MS.gene002011:intron 50.0%
CAGCATACCATAGCGAGCAA+TGG + chr2.3:76152339-76152358 None:intergenic 50.0%
CATGGCACACAACTTACTGG+AGG + chr2.3:76153045-76153064 None:intergenic 50.0%
CCATCAGGAGTTTCCAAGAC+CGG + chr2.3:76152296-76152315 None:intergenic 50.0%
CTCTCAAAGACAGGACCATC+AGG + chr2.3:76152311-76152330 None:intergenic 50.0%
CTGGGACATGTATGATCCAG+AGG - chr2.3:76154235-76154254 MS.gene002011:CDS 50.0%
CTTGGAGGAAGAAGGTCAAG+AGG + chr2.3:76153933-76153952 None:intergenic 50.0%
GAAATCCCCCAACCTTGTTC+AGG + chr2.3:76154322-76154341 None:intergenic 50.0%
GGATTCTTGGGTTTGGGCTT+GGG + chr2.3:76153912-76153931 None:intergenic 50.0%
TAGCCTCAGTCTGCTTAACC+TGG + chr2.3:76153767-76153786 None:intergenic 50.0%
TAGGCGGCATATCCAAGTCT+TGG + chr2.3:76153018-76153037 None:intergenic 50.0%
TGCTGAACCATTTGAGGGAG+AGG - chr2.3:76154559-76154578 MS.gene002011:intron 50.0%
TGTGACCCTGAACAAGGTTG+GGG - chr2.3:76154313-76154332 MS.gene002011:intron 50.0%
TTCCGTGAGGTCGCAATCAA+AGG - chr2.3:76154005-76154024 MS.gene002011:intron 50.0%
TTTCCTGCAGTTGCCCGATT+GGG - chr2.3:76152433-76152452 MS.gene002011:intron 50.0%
! TTAGGCTGCTGCTTAGCAGA+TGG + chr2.3:76153801-76153820 None:intergenic 50.0%
!! AACCAGAGAGAGTATCCCTC+TGG + chr2.3:76154254-76154273 None:intergenic 50.0%
!! CTGGCTCGCAAGTATGCTTT+TGG - chr2.3:76154356-76154375 MS.gene002011:intron 50.0%
!! GAAATTGGGCTGGTTGACCA+AGG + chr2.3:76153730-76153749 None:intergenic 50.0%
!! TTCGCTCAAGAGAGCACTTG+AGG - chr2.3:76153548-76153567 MS.gene002011:CDS 50.0%
ACAAAGGCCGTGTGGTCTCT+TGG - chr2.3:76152524-76152543 MS.gene002011:intron 55.0%
AGGCCAGGTTAAGCAGACTG+AGG - chr2.3:76153761-76153780 MS.gene002011:intron 55.0%
AGGTTGGGGGATTTCTGCAG+AGG - chr2.3:76154327-76154346 MS.gene002011:intron 55.0%
CACCAAGAGGAACTTCCGTG+AGG - chr2.3:76153992-76154011 MS.gene002011:intron 55.0%
CCGGTCTTGGAAACTCCTGA+TGG - chr2.3:76152293-76152312 MS.gene002011:CDS 55.0%
CGGCATATCCAAGTCTTGGC+AGG + chr2.3:76153014-76153033 None:intergenic 55.0%
CTTTCCTGCAGTTGCCCGAT+TGG - chr2.3:76152432-76152451 MS.gene002011:intron 55.0%
GACCTCACGGAAGTTCCTCT+TGG + chr2.3:76153997-76154016 None:intergenic 55.0%
GGAGCTCTATGAGTGGACCA+AGG - chr2.3:76154484-76154503 MS.gene002011:CDS 55.0%
GTGACCCTGAACAAGGTTGG+GGG - chr2.3:76154314-76154333 MS.gene002011:intron 55.0%
TGGGGGATTTCTGCAGAGGA+TGG - chr2.3:76154331-76154350 MS.gene002011:intron 55.0%
TTCAGGCCCACATTGACCAG+TGG - chr2.3:76152941-76152960 MS.gene002011:CDS 55.0%
! AAGGGGTTGTGGCTTTTCCG+TGG - chr2.3:76154419-76154438 MS.gene002011:CDS 55.0%
! TTCCGTTGTTGGGAGCGTGA+AGG + chr2.3:76152056-76152075 None:intergenic 55.0%
TGACCCAATCGGGCAACTGC+AGG + chr2.3:76152439-76152458 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 76151952 76154610 76151952 ID=MS.gene002011
chr2.3 mRNA 76151952 76154610 76151952 ID=MS.gene002011.t1;Parent=MS.gene002011
chr2.3 exon 76154599 76154610 76154599 ID=MS.gene002011.t1.exon1;Parent=MS.gene002011.t1
chr2.3 CDS 76154599 76154610 76154599 ID=cds.MS.gene002011.t1;Parent=MS.gene002011.t1
chr2.3 exon 76154359 76154511 76154359 ID=MS.gene002011.t1.exon2;Parent=MS.gene002011.t1
chr2.3 CDS 76154359 76154511 76154359 ID=cds.MS.gene002011.t1;Parent=MS.gene002011.t1
chr2.3 exon 76154212 76154272 76154212 ID=MS.gene002011.t1.exon3;Parent=MS.gene002011.t1
chr2.3 CDS 76154212 76154272 76154212 ID=cds.MS.gene002011.t1;Parent=MS.gene002011.t1
chr2.3 exon 76154070 76154119 76154070 ID=MS.gene002011.t1.exon4;Parent=MS.gene002011.t1
chr2.3 CDS 76154070 76154119 76154070 ID=cds.MS.gene002011.t1;Parent=MS.gene002011.t1
chr2.3 exon 76153515 76153616 76153515 ID=MS.gene002011.t1.exon5;Parent=MS.gene002011.t1
chr2.3 CDS 76153515 76153616 76153515 ID=cds.MS.gene002011.t1;Parent=MS.gene002011.t1
chr2.3 exon 76152536 76153034 76152536 ID=MS.gene002011.t1.exon6;Parent=MS.gene002011.t1
chr2.3 CDS 76152536 76153034 76152536 ID=cds.MS.gene002011.t1;Parent=MS.gene002011.t1
chr2.3 exon 76151952 76152331 76151952 ID=MS.gene002011.t1.exon7;Parent=MS.gene002011.t1
chr2.3 CDS 76151952 76152331 76151952 ID=cds.MS.gene002011.t1;Parent=MS.gene002011.t1
Gene Sequence

>MS.gene002011

ATGGCGGCCTTGGTTAGTATATTCACTCACTCTTTGTTCTTCGTTTTCTATTTTCAATTACCACTACTTGTTGTTGATTATTATGATTTTACAATTTAGATCCTTCACGCTCCCAACAACGGAAACAAAAATGTTTACAAAACTCTGATTGCTGCTGAATATGTTGGTGTTCAAGTTCAATTGACTCCTGATTTTCAGATGGGTGTTTCCAACAAAACCCCTCAATTTATCAACATGAACCCTATTGGAAAGGTAGGTATTGTTTATTATTCTTTCTTTCATTATATAATCAATTTCTATCTAAATTATTATTATTATTCCTTCTTTCTTTCTTTCAGGTTCCGGTCTTGGAAACTCCTGATGGTCCTGTCTTTGAGAGTAATGCCATTGCTCGCTATGGTATGCTGCTTTTTTCACTTTACTTGATGTTACATTATCTCTCTTTTTTTTTTTTGTTCATTTACTCATTCTTGTAACTTACTTTCCTGCAGTTGCCCGATTGGGTCACAACAATTTATTTGGATCATCTCTTATTGATCAGGTAACTTACATGAATACCATATAATAATAAAACAAAGGCCGTGTGGTCTCTTGGTTTTCAATTCTAAATTAACTGTTACTACATTCAAATATTTTTACAACTTGAAAGACTTATATTTAATTTATTAAGTTAAAAAAACTGTTTTCAAGTAATTTTGCCAGAAAAGATTCTAGTTTAGATGAAATCTTAAATCCACACTTACTTTTTCTCTGATTACTATTGCAAGTGAAAAAAAAAAACTGTTTTCATATGAAACTTAATTAAATTTACAGAAGTATCCTTTTTGATATTTATTGGGAAAATTCAACCAACCAACTGCCAAGATTAAATCTATTTTAATTGGTTGAAGCATCCCTTGTATGTGGTTTATATATAGAGGGTAAATTTGCAAAGGACCAAAAGATTGCATATCCCTGTGTTCTCATGGAAGTTATTTGAATTTTGTTGTTTCAGGCCCACATTGACCAGTGGATTGATTTTTCTTCTCTGGAGATTGATGCCAATATCATGAAGTTGTACCTGCCAAGACTTGGATATGCCGCCTACTTTCCTCCAGTAAGTTGTGTGCCATGTTGTTTTTTTTTTCAATATTAATTTGTTTTTTATCTTGTTTGAAGTTTCTAGTCCTGAGTATTGATAGCAATTATATAATATTTGAGTTGGCCTCAGTTATTCACAAATGTTTTCTGAAATCAATTAGTTTGGTTACCAACAATCCATGTATCTCTTCTAACATCTCAGATGGTACACTGTTATTATTCGAGTCTTTGCAATACAAACTTTCCCTTTTTTGAAATTTGTGTCTAAATGAAGGACTGGTAAATCAATTACTCAAAGTGTTTTTGCAATACCAACTCCCCCCTTTTGAAAATATTCAGCAAGTGCTTTTTGAAATCAATTAGTTTGATCATTAACAATCAATGTATCTCTTTTAACATCTCAGTTGGTACATGTTTATTATTTGCGTTTTTACAATACCAACTCTTCCCCTTTTACTGAATATTTTCCCTTTTTGAAATTTGTGTCTGAATAAAGGTAGAGGAGAATGCAATTTCTTCGCTCAAGAGAGCACTTGAGGCATTGAACACTCATCTTGCTCACAATACCTACTTGGTCGGGCATTCTGTTACCCTTGCTGACATTATAACAACATCCAACTTGTATATTGGTTTCGCTAAACTCTTGGTTAAAAGCTTCACCTCAGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAACCAGCCCAATTTCCGCAAGATATTAGGCCAGGTTAAGCAGACTGAGGCTATGCCACCTATTCCATCTGCTAAGCAGCAGCCTAAGGAGTCTAAGCCCAAAACCAAAGATGAACCAAAGAAAGTGGCTAAATCAGAGCCCGAAAAGCCCAAAGTAGAAGTTGAAGAGGAGGCACCCAAGCCCAAACCCAAGAATCCTCTTGACCTTCTTCCTCCAAGTAAGATGATTTTGGATGACTGGAAAAGACTCTACTCTAACACCAAGAGGAACTTCCGTGAGGTCGCAATCAAAGGTATTGTGGTCACATTCCTGTAGTTTCTTTTTTTTTTCAAGCTTTTGTAGCTTCTAGGATTATGATTGTAGCTTATATCCTTTGGAAATATACTATTCTCTGTTTTTGGAAACTTGATTCTTTTTATCATGACTGTACTGTATCAAAGAATGTCAAAATTTGTTAATGAGATTCAATGATCTAATTCCTGTGTTTGATTTGCAGGATTCTGGGACATGTATGATCCAGAGGGATACTCTCTCTGGTTCTGTGATTACAAATACAATGATGAGAACACTGTTTCTTTTGTGACCCTGAACAAGGTTGGGGGATTTCTGCAGAGGATGGATCTGGCTCGCAAGTATGCTTTTGGAAAGATGCTTATAATTGGATCAGAGCCTCCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGTGGACAAGAGATTCCAAAATTTATCATGGATGAATGCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTCTGATGAAGTTCAGAAAGAGCGTGCCAGTCAGATGATTGAAGATGCTGAACCATTTGAGGGAGAGGCTCTTTTGGATGCCAAGTGCTTTAAGTGA
Protein sequence

>MS.gene002011.t1

MAALILHAPNNGNKNVYKTLIAAEYVGVQVQLTPDFQMGVSNKTPQFINMNPIGKVPVLETPDGPVFESNAIARYVARLGHNNLFGSSLIDQAHIDQWIDFSSLEIDANIMKLYLPRLGYAAYFPPVEENAISSLKRALEALNTHLAHNTYLVGHSVTLADIITTSNLYIGFAKLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAMPPIPSAKQQPKESKPKTKDEPKKVAKSEPEKPKVEVEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNTKRNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPKFIMDECYDMELYEWTKVDISDEVQKERASQMIEDAEPFEGEALLDAKCFK