Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04296.t1 | XP_013460045.1 | 92.6 | 419 | 31 | 0 | 1 | 419 | 1 | 419 | 6.30E-210 | 740 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04296.t1 | Q9FUM1 | 78.2 | 422 | 89 | 2 | 1 | 419 | 1 | 422 | 2.2e-179 | 629.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04296.t1 | A0A072UXB1 | 92.6 | 419 | 31 | 0 | 1 | 419 | 1 | 419 | 4.5e-210 | 740.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042040 | MS.gene04296 | PPI |
| MS.gene04296 | MS.gene04200 | PPI |
| MS.gene04296 | MS.gene023009 | PPI |
| MS.gene04296 | MS.gene43488 | PPI |
| MS.gene04296 | MS.gene027317 | PPI |
| MS.gene002011 | MS.gene04296 | PPI |
| MS.gene94948 | MS.gene04296 | PPI |
| MS.gene04296 | MS.gene84450 | PPI |
| MS.gene04296 | MS.gene00585 | PPI |
| MS.gene95042 | MS.gene04296 | PPI |
| MS.gene047236 | MS.gene04296 | PPI |
| MS.gene04296 | MS.gene072093 | PPI |
| MS.gene04296 | MS.gene012799 | PPI |
| MS.gene04296 | MS.gene051739 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04296.t1 | MTR_3g058940 | 96.181 | 419 | 16 | 0 | 1 | 419 | 1 | 419 | 0.0 | 838 |
| MS.gene04296.t1 | MTR_2g005570 | 88.305 | 419 | 45 | 3 | 2 | 419 | 3 | 418 | 0.0 | 747 |
| MS.gene04296.t1 | MTR_2g005570 | 88.067 | 419 | 46 | 3 | 2 | 419 | 3 | 418 | 0.0 | 746 |
| MS.gene04296.t1 | MTR_4g134770 | 78.810 | 420 | 87 | 2 | 1 | 419 | 1 | 419 | 0.0 | 665 |
| MS.gene04296.t1 | MTR_4g134770 | 81.039 | 385 | 71 | 2 | 36 | 419 | 1 | 384 | 0.0 | 622 |
| MS.gene04296.t1 | MTR_1g088850 | 27.358 | 212 | 143 | 4 | 1 | 203 | 1 | 210 | 2.16e-13 | 69.7 |
| MS.gene04296.t1 | MTR_5g090910 | 24.885 | 217 | 136 | 6 | 13 | 214 | 12 | 216 | 2.30e-11 | 63.5 |
| MS.gene04296.t1 | MTR_3g064700 | 26.471 | 170 | 116 | 4 | 40 | 201 | 40 | 208 | 4.52e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04296.t1 | AT1G09640 | 75.476 | 420 | 96 | 4 | 1 | 419 | 1 | 414 | 0.0 | 637 |
| MS.gene04296.t1 | AT1G57720 | 75.000 | 420 | 97 | 5 | 1 | 419 | 1 | 413 | 0.0 | 625 |
| MS.gene04296.t1 | AT1G57720 | 75.000 | 420 | 97 | 5 | 1 | 419 | 1 | 413 | 0.0 | 625 |
| MS.gene04296.t1 | AT1G09640 | 68.137 | 204 | 64 | 1 | 1 | 203 | 1 | 204 | 9.17e-97 | 291 |
| MS.gene04296.t1 | AT1G09640 | 86.301 | 73 | 9 | 1 | 348 | 419 | 193 | 265 | 2.13e-35 | 132 |
| MS.gene04296.t1 | AT2G30870 | 30.114 | 176 | 97 | 7 | 1 | 160 | 1 | 166 | 4.14e-14 | 71.6 |
| MS.gene04296.t1 | AT3G62760 | 26.190 | 210 | 144 | 4 | 1 | 201 | 1 | 208 | 3.61e-13 | 68.9 |
| MS.gene04296.t1 | AT2G30860 | 30.769 | 169 | 105 | 4 | 1 | 160 | 1 | 166 | 1.25e-11 | 64.3 |
Find 125 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGACTTGCAGGATTC+TGG | 0.045791 | 3.4:-55870788 | MS.gene04296:intron |
| CCGAATATCTTTCGGAAATT+TGG | 0.136668 | 3.4:+55871277 | None:intergenic |
| TGGATCAGAGCCTCCATTTA+AGG | 0.199866 | 3.4:-55870610 | MS.gene04296:CDS |
| TTTGGAAAGATGCTTATAAT+TGG | 0.211636 | 3.4:-55870630 | MS.gene04296:CDS |
| ACAGCATCCAACTTGTATTT+AGG | 0.219925 | 3.4:-55871379 | MS.gene04296:CDS |
| AGGATTCTTGGGTTTGGGCT+TGG | 0.229246 | 3.4:+55871099 | None:intergenic |
| TCTGATTTAGCCACTTTCTT+TGG | 0.234756 | 3.4:+55871163 | None:intergenic |
| GGATTCTTGGGTTTGGGCTT+GGG | 0.257138 | 3.4:+55871100 | None:intergenic |
| CTCTTCAGCATCTACAACTT+TGG | 0.257231 | 3.4:+55871129 | None:intergenic |
| CACAACCCCTTCACCTTAAA+TGG | 0.280661 | 3.4:+55870597 | None:intergenic |
| TCCTCCAAGCAAGATGGTTT+TGG | 0.282341 | 3.4:-55871065 | MS.gene04296:CDS |
| CAACTTACTGGAGGAAAGTA+TGG | 0.282441 | 3.4:+55871764 | None:intergenic |
| CTGGCTCGCAAGTATGCTTT+TGG | 0.282861 | 3.4:-55870648 | MS.gene04296:CDS |
| AGTTGTGGGCTTGGATTCCT+TGG | 0.298977 | 3.4:+55871195 | None:intergenic |
| TTTATCAACATGAATCCTAT+TGG | 0.311982 | 3.4:-55873169 | MS.gene04296:CDS |
| AAGAAGATCTAGAGGATTCT+TGG | 0.312345 | 3.4:+55871087 | None:intergenic |
| ATTTGAGGGAGAGGCTCTTT+TGG | 0.313654 | 3.4:-55870436 | MS.gene04296:CDS |
| TTGGGTGAAAACAATTTGTT+TGG | 0.314427 | 3.4:-55872434 | MS.gene04296:CDS |
| CCAAATTTCCGAAAGATATT+CGG | 0.318144 | 3.4:-55871277 | MS.gene04296:CDS |
| TCTTCAGCATCTACAACTTT+GGG | 0.319074 | 3.4:+55871130 | None:intergenic |
| ATCTAGAGGATTCTTGGGTT+TGG | 0.321575 | 3.4:+55871093 | None:intergenic |
| CGTTTGACTTGCAGGATTCT+GGG | 0.329918 | 3.4:-55870787 | MS.gene04296:intron |
| TCTAGAGGATTCTTGGGTTT+GGG | 0.331606 | 3.4:+55871094 | None:intergenic |
| TTCGTTACAGGTTCCGGTCT+TGG | 0.337595 | 3.4:-55873035 | MS.gene04296:intron |
| TGGATTCCTTGGGCTGGGTA+GGG | 0.340594 | 3.4:+55871206 | None:intergenic |
| TTGGATTCCTTGGGCTGGGT+AGG | 0.340967 | 3.4:+55871205 | None:intergenic |
| TGCATCTTTAGTTGTGGGCT+TGG | 0.341316 | 3.4:+55871186 | None:intergenic |
| TTTGGTGCATCTTTAGTTGT+GGG | 0.356845 | 3.4:+55871181 | None:intergenic |
| TGGGCTTGGATTCCTTGGGC+TGG | 0.367185 | 3.4:+55871200 | None:intergenic |
| GGATTCCTTGGGCTGGGTAG+GGG | 0.368128 | 3.4:+55871207 | None:intergenic |
| GAAACACCTATCTGAAAATC+TGG | 0.371276 | 3.4:+55873208 | None:intergenic |
| AATACTAATACCTTTCCAAT+AGG | 0.377027 | 3.4:+55873154 | None:intergenic |
| CTCATGTTGAGAGATACTTC+TGG | 0.381009 | 3.4:-55871315 | MS.gene04296:CDS |
| CAGCGGTATCAAAGTTGAAT+TGG | 0.383885 | 3.4:-55873233 | MS.gene04296:CDS |
| CATTCATCCATGATAAACTT+TGG | 0.388731 | 3.4:+55870552 | None:intergenic |
| CTTTGCTGCAGTTGCACGAT+TGG | 0.396776 | 3.4:-55872453 | MS.gene04296:intron |
| CATTTAAGGTGAAGGGGTTG+TGG | 0.403530 | 3.4:-55870596 | MS.gene04296:CDS |
| TAACCTGGCCGAATATCTTT+CGG | 0.403734 | 3.4:+55871269 | None:intergenic |
| TTCTTCCACAGTCATGGCTC+TGG | 0.408438 | 3.4:-55873405 | None:intergenic |
| CTCTCAAAGACAGGACCATC+AGG | 0.427780 | 3.4:+55873007 | None:intergenic |
| AGAAGATCTAGAGGATTCTT+GGG | 0.430254 | 3.4:+55871088 | None:intergenic |
| GACCTCACGGAAGTTGGTCT+TGG | 0.430255 | 3.4:+55871015 | None:intergenic |
| TGGTGGGTTTCTTCAAAGAA+TGG | 0.433281 | 3.4:-55870673 | MS.gene04296:CDS |
| GTCATTGAAGAGAGCATTTG+AGG | 0.435935 | 3.4:-55871470 | MS.gene04296:CDS |
| GTTTCTTCAAAGAATGGATC+TGG | 0.437648 | 3.4:-55870667 | MS.gene04296:CDS |
| TTTAGGTTTCGCTCAACTCT+TGG | 0.441769 | 3.4:-55871362 | MS.gene04296:CDS |
| CTTTGGTGCATCTTTAGTTG+TGG | 0.442321 | 3.4:+55871180 | None:intergenic |
| TGGATCATCTCCCATTGATC+AGG | 0.442424 | 3.4:-55872414 | MS.gene04296:intron |
| AGAGATTCCAAAGTTTATCA+TGG | 0.445357 | 3.4:-55870559 | MS.gene04296:CDS |
| ATCCAGAGGGATATTCTCTC+TGG | 0.453121 | 3.4:-55870755 | MS.gene04296:CDS |
| GGGGTCTTAGCAGATGGAAT+AGG | 0.453847 | 3.4:+55871226 | None:intergenic |
| GGGCTTGGATTCCTTGGGCT+GGG | 0.454427 | 3.4:+55871201 | None:intergenic |
| GTTGTGGGCTTGGATTCCTT+GGG | 0.454512 | 3.4:+55871196 | None:intergenic |
| AAAAGAGCCTCTCCCTCAAA+TGG | 0.463286 | 3.4:+55870438 | None:intergenic |
| TAGCTTCAGTTTGCTTAACC+TGG | 0.466563 | 3.4:+55871254 | None:intergenic |
| TGTTTCCCTTCGGAGCGTGC+AGG | 0.478892 | 3.4:+55873290 | None:intergenic |
| TTTCCGAAAGATATTCGGCC+AGG | 0.479571 | 3.4:-55871272 | MS.gene04296:CDS |
| GGATTCATGTTGATAAATTG+AGG | 0.482185 | 3.4:+55873175 | None:intergenic |
| CTCACAATACCTACCTGGTT+GGG | 0.483114 | 3.4:-55871429 | MS.gene04296:CDS |
| TTTGCTGCAGTTGCACGATT+GGG | 0.483835 | 3.4:-55872452 | MS.gene04296:intron |
| CAAAGTTGTAGATGCTGAAG+AGG | 0.496485 | 3.4:-55871128 | MS.gene04296:CDS |
| TCATCCAAAACCATCTTGCT+TGG | 0.496743 | 3.4:+55871061 | None:intergenic |
| ATATCTTTCGGAAATTTGGC+TGG | 0.499145 | 3.4:+55871281 | None:intergenic |
| GTAGATCCTGCACGCTCCGA+AGG | 0.503479 | 3.4:-55873296 | MS.gene04296:intron |
| GATTGCGACCTCACGGAAGT+TGG | 0.507774 | 3.4:+55871009 | None:intergenic |
| ATCGCATTGCTCTCAAAGAC+AGG | 0.508098 | 3.4:+55872998 | None:intergenic |
| GAGCCTCCATTTAAGGTGAA+GGG | 0.508653 | 3.4:-55870603 | MS.gene04296:CDS |
| TCCAAAACCATCTTGCTTGG+AGG | 0.513832 | 3.4:+55871064 | None:intergenic |
| TTCCGTGAGGTCGCAATCAA+AGG | 0.519400 | 3.4:-55871004 | MS.gene04296:intron |
| TAAAGATGCACCAAAGAAAG+TGG | 0.525965 | 3.4:-55871173 | MS.gene04296:CDS |
| TCTTCTTCCTCCAAGCAAGA+TGG | 0.531928 | 3.4:-55871071 | MS.gene04296:CDS |
| TATGGGGAAAATCCATGTCT+TGG | 0.532882 | 3.4:+55871782 | None:intergenic |
| CCTTGCTCACAATACCTACC+TGG | 0.540810 | 3.4:-55871434 | MS.gene04296:CDS |
| AGCGAAACCTAAATACAAGT+TGG | 0.546647 | 3.4:+55871372 | None:intergenic |
| TACCTTTGATTGCGACCTCA+CGG | 0.549156 | 3.4:+55871002 | None:intergenic |
| AAAATCTTCAATCATCTGAC+TGG | 0.550866 | 3.4:+55870464 | None:intergenic |
| TGACACTGAACAAGGTTGGT+GGG | 0.551452 | 3.4:-55870689 | MS.gene04296:CDS |
| TTCAGGCCCACGTTGAACAA+TGG | 0.553331 | 3.4:-55871856 | MS.gene04296:intron |
| GCTCACAATACCTACCTGGT+TGG | 0.554794 | 3.4:-55871430 | MS.gene04296:CDS |
| TTCGTGACACTGAACAAGGT+TGG | 0.558246 | 3.4:-55870693 | MS.gene04296:CDS |
| AAGTTGTATCGGCCAAGACA+TGG | 0.560371 | 3.4:-55871794 | MS.gene04296:CDS |
| AGAGCCTCCATTTAAGGTGA+AGG | 0.562476 | 3.4:-55870604 | MS.gene04296:CDS |
| CTTGGAGGAAGAAGATCTAG+AGG | 0.562656 | 3.4:+55871079 | None:intergenic |
| GTAGGTATTGTGAGCAAGGT+GGG | 0.563350 | 3.4:+55871438 | None:intergenic |
| TTCTTTCGTGACACTGAACA+AGG | 0.563971 | 3.4:-55870697 | MS.gene04296:CDS |
| CCAGGTAGGTATTGTGAGCA+AGG | 0.565174 | 3.4:+55871434 | None:intergenic |
| AACCAGAGAGAATATCCCTC+TGG | 0.572768 | 3.4:+55870753 | None:intergenic |
| AACTTACTGGAGGAAAGTAT+GGG | 0.577057 | 3.4:+55871765 | None:intergenic |
| ACAACATTCTGAAGTTGTAT+CGG | 0.578233 | 3.4:-55871805 | MS.gene04296:CDS |
| CAACATGAATCCTATTGGAA+AGG | 0.578803 | 3.4:-55873164 | MS.gene04296:intron |
| GTGACACTGAACAAGGTTGG+TGG | 0.579111 | 3.4:-55870690 | MS.gene04296:CDS |
| CCATCAGGAGTTTCCAAGAC+CGG | 0.583824 | 3.4:+55873022 | None:intergenic |
| TGCTGTTATAATGTCAGCAA+GGG | 0.586215 | 3.4:+55871396 | None:intergenic |
| AGCAATGCGATGGCTCGCTA+TGG | 0.587860 | 3.4:-55872986 | MS.gene04296:intron |
| CCGGTCTTGGAAACTCCTGA+TGG | 0.589673 | 3.4:-55873022 | MS.gene04296:CDS |
| TAGATCCTGCACGCTCCGAA+GGG | 0.592138 | 3.4:-55873295 | MS.gene04296:CDS |
| AGCCTCCATTTAAGGTGAAG+GGG | 0.592740 | 3.4:-55870602 | MS.gene04296:CDS |
| ACGCTCTTTCTGAGCTTCGT+CGG | 0.595731 | 3.4:+55870488 | None:intergenic |
| GTCTTAGCAGATGGAATAGG+TGG | 0.598600 | 3.4:+55871229 | None:intergenic |
| CTGGGACATGTATGATCCAG+AGG | 0.600612 | 3.4:-55870769 | MS.gene04296:CDS |
| TGTCTAAATGTAGGTAGAGG+AGG | 0.601960 | 3.4:-55871503 | MS.gene04296:intron |
| TTCGTCGGAGATGTCAACCT+TGG | 0.603692 | 3.4:+55870503 | None:intergenic |
| GGGTAACAGAATGCCCAACC+AGG | 0.610540 | 3.4:+55871416 | None:intergenic |
| TGGGTAGGGGTCTTAGCAGA+TGG | 0.610827 | 3.4:+55871220 | None:intergenic |
| ATGCTGTTATAATGTCAGCA+AGG | 0.613579 | 3.4:+55871395 | None:intergenic |
| ACTTTGGAATCTCTTGTCCA+CGG | 0.614824 | 3.4:+55870568 | None:intergenic |
| TGTCTTTGAGAGCAATGCGA+TGG | 0.618092 | 3.4:-55872996 | MS.gene04296:CDS |
| ATCAATCCATTGTTCAACGT+GGG | 0.621694 | 3.4:+55871850 | None:intergenic |
| TGAGAGATACTTCTGGACCT+TGG | 0.623673 | 3.4:-55871308 | MS.gene04296:CDS |
| CTGATTGCCGCTGCATACAG+CGG | 0.627740 | 3.4:-55873250 | MS.gene04296:CDS |
| CAGAAGTATCTCTCAACATG+AGG | 0.629855 | 3.4:+55871316 | None:intergenic |
| CATGGATGAATGCTATGACA+TGG | 0.631015 | 3.4:-55870541 | MS.gene04296:CDS |
| TAAGACCCCTACCCAGCCCA+AGG | 0.634401 | 3.4:-55871212 | MS.gene04296:CDS |
| GGTAGGTATTGTGAGCAAGG+TGG | 0.640768 | 3.4:+55871437 | None:intergenic |
| TTTGATACCGCTGTATGCAG+CGG | 0.649593 | 3.4:+55873243 | None:intergenic |
| GAAATTTGGCTGGTTCACCA+AGG | 0.651913 | 3.4:+55871291 | None:intergenic |
| AACCCCTTCACCTTAAATGG+AGG | 0.653598 | 3.4:+55870600 | None:intergenic |
| TGGGACATGTATGATCCAGA+GGG | 0.668464 | 3.4:-55870768 | MS.gene04296:CDS |
| ATGACATGGAGCTGTATGAG+TGG | 0.681725 | 3.4:-55870527 | MS.gene04296:CDS |
| AATCAATCCATTGTTCAACG+TGG | 0.688879 | 3.4:+55871849 | None:intergenic |
| ACTTACTGGAGGAAAGTATG+GGG | 0.693003 | 3.4:+55871766 | None:intergenic |
| AACAGAATGCCCAACCAGGT+AGG | 0.711223 | 3.4:+55871420 | None:intergenic |
| CTCAACATGAGGAAACTCTG+AGG | 0.714280 | 3.4:+55871327 | None:intergenic |
| CACCAAGACCAACTTCCGTG+AGG | 0.739745 | 3.4:-55871017 | MS.gene04296:CDS |
| GGAGCTGTATGAGTGGACCA+AGG | 0.785376 | 3.4:-55870520 | MS.gene04296:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATAACAGAAACTATT+AGG | - | chr3.4:55871184-55871203 | MS.gene04296:CDS | 20.0% |
| !! | AATAATATTAGAGAGAGTTT+CGG | - | chr3.4:55871019-55871038 | MS.gene04296:CDS | 20.0% |
| !! | AATCGAAGTAATTGAAAATA+AGG | + | chr3.4:55870445-55870464 | None:intergenic | 20.0% |
| !! | ATATAGTATCACACTAAAAA+TGG | + | chr3.4:55871863-55871882 | None:intergenic | 20.0% |
| !! | ATCGAAGTAATTGAAAATAA+GGG | + | chr3.4:55870444-55870463 | None:intergenic | 20.0% |
| !! | CAAAAAAATTGCAATTAGAT+TGG | + | chr3.4:55870487-55870506 | None:intergenic | 20.0% |
| !! | CTATATGCATTATTAATATG+TGG | - | chr3.4:55871877-55871896 | MS.gene04296:intron | 20.0% |
| !! | TTAGACACAAATTTCAAAAA+CGG | + | chr3.4:55872292-55872311 | None:intergenic | 20.0% |
| !!! | AATGTCAAAATTTGTTAATG+AGG | - | chr3.4:55872971-55872990 | MS.gene04296:intron | 20.0% |
| !!! | AGTCTATGATGTTATTTAAT+TGG | - | chr3.4:55870852-55870871 | MS.gene04296:intron | 20.0% |
| !!! | AGTTTCTGTTATAGTTTTTT+TGG | + | chr3.4:55871181-55871200 | None:intergenic | 20.0% |
| !!! | ATTTTATTATGATTCGTTAC+AGG | - | chr3.4:55870761-55870780 | MS.gene04296:CDS | 20.0% |
| !!! | CAATCTAATTGCAATTTTTT+TGG | - | chr3.4:55870485-55870504 | MS.gene04296:CDS | 20.0% |
| !!! | GTTTCTGTTATAGTTTTTTT+GGG | + | chr3.4:55871180-55871199 | None:intergenic | 20.0% |
| !!! | TATAATGTTTTATGATCAGT+TGG | - | chr3.4:55872160-55872179 | MS.gene04296:intron | 20.0% |
| !!! | TTGAAATGTTTTCATGATTA+TGG | - | chr3.4:55871567-55871586 | MS.gene04296:intron | 20.0% |
| ! | AAAAAATGTACCTGATCAAT+GGG | + | chr3.4:55871407-55871426 | None:intergenic | 25.0% |
| ! | AATACTAATACCTTTCCAAT+AGG | + | chr3.4:55870657-55870676 | None:intergenic | 25.0% |
| ! | AATATGTGGTTTATCTTTCT+TGG | - | chr3.4:55871891-55871910 | MS.gene04296:intron | 25.0% |
| ! | ATAATATTAGAGAGAGTTTC+GGG | - | chr3.4:55871020-55871039 | MS.gene04296:CDS | 25.0% |
| ! | ATTCCACCAAAAAAAGATTA+TGG | + | chr3.4:55871495-55871514 | None:intergenic | 25.0% |
| ! | CTACAGTATATTCATCATAA+AGG | + | chr3.4:55872946-55872965 | None:intergenic | 25.0% |
| ! | CTAGAATAGTATATTTCCAA+AGG | + | chr3.4:55872903-55872922 | None:intergenic | 25.0% |
| ! | TAAAAAAGATGGTAGGAAAT+AGG | - | chr3.4:55871055-55871074 | MS.gene04296:CDS | 25.0% |
| ! | TAGACACAAATTTCAAAAAC+GGG | + | chr3.4:55872291-55872310 | None:intergenic | 25.0% |
| ! | TCGAAGTAATTGAAAATAAG+GGG | + | chr3.4:55870443-55870462 | None:intergenic | 25.0% |
| ! | TGAAATTTGTGTCTAAATGT+AGG | - | chr3.4:55872296-55872315 | MS.gene04296:intron | 25.0% |
| ! | TGGTCTATGATAGAATATTA+TGG | - | chr3.4:55871241-55871260 | MS.gene04296:CDS | 25.0% |
| ! | TTCACTTATAATCGCAAAAT+AGG | + | chr3.4:55871461-55871480 | None:intergenic | 25.0% |
| ! | TTCCACCAAAAAAAGATTAT+GGG | + | chr3.4:55871494-55871513 | None:intergenic | 25.0% |
| ! | TTTATCAACATGAATCCTAT+TGG | - | chr3.4:55870639-55870658 | MS.gene04296:CDS | 25.0% |
| ! | TTTGGAAAGATGCTTATAAT+TGG | - | chr3.4:55873178-55873197 | MS.gene04296:CDS | 25.0% |
| !! | AGATTGGTTATTAATAACTG+AGG | + | chr3.4:55870471-55870490 | None:intergenic | 25.0% |
| !! | TACTATTCTAGCAATGTTTT+TGG | - | chr3.4:55872912-55872931 | MS.gene04296:intron | 25.0% |
| !! | TAGTTAAAGTCGAGATTTTA+CGG | + | chr3.4:55871828-55871847 | None:intergenic | 25.0% |
| !!! | ATGGATTGATTTTTCTTCTA+CGG | - | chr3.4:55871971-55871990 | MS.gene04296:intron | 25.0% |
| !!! | CTATACCCATAATCTTTTTT+TGG | - | chr3.4:55871486-55871505 | MS.gene04296:CDS | 25.0% |
| !!! | TATTAATTTGCTTCGTTAAC+TGG | - | chr3.4:55872094-55872113 | MS.gene04296:intron | 25.0% |
| !!! | TTTAAGTTTTTGTAGCTTCT+AGG | - | chr3.4:55872857-55872876 | MS.gene04296:intron | 25.0% |
| AAAATCTTCAATCATCTGAC+TGG | + | chr3.4:55873347-55873366 | None:intergenic | 30.0% | |
| AACGGGAAAAATTCAGTAAA+AGG | + | chr3.4:55872274-55872293 | None:intergenic | 30.0% | |
| ACAGCAAATTACAAGTAGAA+TGG | + | chr3.4:55871932-55871951 | None:intergenic | 30.0% | |
| ACGGGAAAAATTCAGTAAAA+GGG | + | chr3.4:55872273-55872292 | None:intergenic | 30.0% | |
| AGACTTAGAGATTAATGAGT+TGG | - | chr3.4:55871209-55871228 | MS.gene04296:CDS | 30.0% | |
| AGAGATTCCAAAGTTTATCA+TGG | - | chr3.4:55873249-55873268 | MS.gene04296:CDS | 30.0% | |
| AGATATTAACATACGACAAG+CGG | + | chr3.4:55870739-55870758 | None:intergenic | 30.0% | |
| AGCACCTATAGTAAAAAAGA+TGG | - | chr3.4:55871044-55871063 | MS.gene04296:CDS | 30.0% | |
| ATAGGAGAATATAATAAGCG+TGG | - | chr3.4:55870937-55870956 | MS.gene04296:intron | 30.0% | |
| CAAAAAATGTACCTGATCAA+TGG | + | chr3.4:55871408-55871427 | None:intergenic | 30.0% | |
| CATTCATCCATGATAAACTT+TGG | + | chr3.4:55873259-55873278 | None:intergenic | 30.0% | |
| CCAAATTTCCGAAAGATATT+CGG | - | chr3.4:55872531-55872550 | MS.gene04296:intron | 30.0% | |
| CCTATAGTAAAAAAGATGGT+AGG | - | chr3.4:55871048-55871067 | MS.gene04296:CDS | 30.0% | |
| CGCTTATTATATTCTCCTAT+TGG | + | chr3.4:55870937-55870956 | None:intergenic | 30.0% | |
| TAACATCATATGCAACTTAC+TGG | + | chr3.4:55872059-55872078 | None:intergenic | 30.0% | |
| TACAAGTAGAATGGAATATC+AGG | + | chr3.4:55871923-55871942 | None:intergenic | 30.0% | |
| TGATTGTAGCTTATATCCTT+TGG | - | chr3.4:55872884-55872903 | MS.gene04296:intron | 30.0% | |
| TGGTTTATCTTTCTTGGAAA+TGG | - | chr3.4:55871897-55871916 | MS.gene04296:intron | 30.0% | |
| TTTGCGATTATAAGTGAATG+TGG | - | chr3.4:55871463-55871482 | MS.gene04296:CDS | 30.0% | |
| ! | GGATTCATGTTGATAAATTG+AGG | + | chr3.4:55870636-55870655 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGACTGTAATA+TGG | - | chr3.4:55871221-55871240 | MS.gene04296:CDS | 30.0% |
| ! | TTGGGTGAAAACAATTTGTT+TGG | - | chr3.4:55871374-55871393 | MS.gene04296:CDS | 30.0% |
| !! | ACAACATTCTGAAGTTGTAT+CGG | - | chr3.4:55872003-55872022 | MS.gene04296:intron | 30.0% |
| !! | ATTGATTTTGCTATCCTGAA+AGG | - | chr3.4:55870703-55870722 | MS.gene04296:CDS | 30.0% |
| !! | TAAGCATTTTTGTTTCCCTT+CGG | + | chr3.4:55870531-55870550 | None:intergenic | 30.0% |
| !! | TACTTGTAATTTGCTGTTTC+AGG | - | chr3.4:55871935-55871954 | MS.gene04296:intron | 30.0% |
| !! | TTGATTTTGCTATCCTGAAA+GGG | - | chr3.4:55870704-55870723 | MS.gene04296:CDS | 30.0% |
| !!! | CCTACCATCTTTTTTACTAT+AGG | + | chr3.4:55871051-55871070 | None:intergenic | 30.0% |
| !!! | TACCCATAATCTTTTTTTGG+TGG | - | chr3.4:55871489-55871508 | MS.gene04296:CDS | 30.0% |
| AAGAAGATCTAGAGGATTCT+TGG | + | chr3.4:55872724-55872743 | None:intergenic | 35.0% | |
| AATCAATCCATTGTTCAACG+TGG | + | chr3.4:55871962-55871981 | None:intergenic | 35.0% | |
| AATCTCGACTTTAACTACCT+TGG | - | chr3.4:55871831-55871850 | MS.gene04296:CDS | 35.0% | |
| ACAGCATCCAACTTGTATTT+AGG | - | chr3.4:55872429-55872448 | MS.gene04296:CDS | 35.0% | |
| AGAAGATCTAGAGGATTCTT+GGG | + | chr3.4:55872723-55872742 | None:intergenic | 35.0% | |
| AGCGAAACCTAAATACAAGT+TGG | + | chr3.4:55872439-55872458 | None:intergenic | 35.0% | |
| AGTAAGGAGAGTAGATTAGA+TGG | - | chr3.4:55871122-55871141 | MS.gene04296:CDS | 35.0% | |
| ATATCTTTCGGAAATTTGGC+TGG | + | chr3.4:55872530-55872549 | None:intergenic | 35.0% | |
| ATCAATCCATTGTTCAACGT+GGG | + | chr3.4:55871961-55871980 | None:intergenic | 35.0% | |
| ATGCTGTTATAATGTCAGCA+AGG | + | chr3.4:55872416-55872435 | None:intergenic | 35.0% | |
| CAACATGAATCCTATTGGAA+AGG | - | chr3.4:55870644-55870663 | MS.gene04296:CDS | 35.0% | |
| CATGCATGATATTGTTTACG+AGG | - | chr3.4:55870680-55870699 | MS.gene04296:CDS | 35.0% | |
| CCGAATATCTTTCGGAAATT+TGG | + | chr3.4:55872534-55872553 | None:intergenic | 35.0% | |
| CGGGAAAAATTCAGTAAAAG+GGG | + | chr3.4:55872272-55872291 | None:intergenic | 35.0% | |
| GAAACACCTATCTGAAAATC+TGG | + | chr3.4:55870603-55870622 | None:intergenic | 35.0% | |
| GATGATAGTTAGATCACTAG+AGG | - | chr3.4:55871144-55871163 | MS.gene04296:CDS | 35.0% | |
| GGAATTTCTCCTGTTAATCA+CGG | - | chr3.4:55871520-55871539 | MS.gene04296:intron | 35.0% | |
| GTATTGTGATTATGCTTCTG+TGG | - | chr3.4:55872826-55872845 | MS.gene04296:intron | 35.0% | |
| GTTTCTTCAAAGAATGGATC+TGG | - | chr3.4:55873141-55873160 | MS.gene04296:intron | 35.0% | |
| TAAAGATGCACCAAAGAAAG+TGG | - | chr3.4:55872635-55872654 | MS.gene04296:intron | 35.0% | |
| TCATGTTGTTATGTGAGCTA+TGG | - | chr3.4:55871726-55871745 | MS.gene04296:intron | 35.0% | |
| TCTCCTTACTACAAAATCCA+CGG | + | chr3.4:55871112-55871131 | None:intergenic | 35.0% | |
| TCTTCAGCATCTACAACTTT+GGG | + | chr3.4:55872681-55872700 | None:intergenic | 35.0% | |
| TGCTGTTATAATGTCAGCAA+GGG | + | chr3.4:55872415-55872434 | None:intergenic | 35.0% | |
| TTATGATTCGTTACAGGTTC+CGG | - | chr3.4:55870767-55870786 | MS.gene04296:CDS | 35.0% | |
| TTGTGTCTAAATGTAGGTAG+AGG | - | chr3.4:55872302-55872321 | MS.gene04296:intron | 35.0% | |
| ! | AACTTACTGGAGGAAAGTAT+GGG | + | chr3.4:55872046-55872065 | None:intergenic | 35.0% |
| ! | ATCTACAACTTTGGGCTTTT+CGG | + | chr3.4:55872673-55872692 | None:intergenic | 35.0% |
| ! | GAAGATTTTGAGCCATTTGA+GGG | - | chr3.4:55873358-55873377 | MS.gene04296:intron | 35.0% |
| ! | TCTGATTTAGCCACTTTCTT+TGG | + | chr3.4:55872648-55872667 | None:intergenic | 35.0% |
| ! | TGAAGATTTTGAGCCATTTG+AGG | - | chr3.4:55873357-55873376 | MS.gene04296:intron | 35.0% |
| ! | TTTGGTGCATCTTTAGTTGT+GGG | + | chr3.4:55872630-55872649 | None:intergenic | 35.0% |
| !!! | CTTTTTTTGGTGGAATTGTG+TGG | - | chr3.4:55871499-55871518 | MS.gene04296:intron | 35.0% |
| AAACCTTATCCCACTAAGTG+GGG | + | chr3.4:55871290-55871309 | None:intergenic | 40.0% | |
| ACTAAAAATGGAGCCAACCA+AGG | + | chr3.4:55871851-55871870 | None:intergenic | 40.0% | |
| AGTTAGATCACTAGAGGTAG+AGG | - | chr3.4:55871150-55871169 | MS.gene04296:CDS | 40.0% | |
| ATATGTAGAAAGAAGACCCG+TGG | - | chr3.4:55871092-55871111 | MS.gene04296:CDS | 40.0% | |
| ATCTAGAGGATTCTTGGGTT+TGG | + | chr3.4:55872718-55872737 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | + | chr3.4:55871291-55871310 | None:intergenic | 40.0% | |
| CAAAGTTGTAGATGCTGAAG+AGG | - | chr3.4:55872680-55872699 | MS.gene04296:intron | 40.0% | |
| CAACTTACTGGAGGAAAGTA+TGG | + | chr3.4:55872047-55872066 | None:intergenic | 40.0% | |
| CAGCGGTATCAAAGTTGAAT+TGG | - | chr3.4:55870575-55870594 | MS.gene04296:CDS | 40.0% | |
| CAGTAAAAGGGGAAGTTAAC+AGG | + | chr3.4:55872261-55872280 | None:intergenic | 40.0% | |
| CATCATATGCAACTTACTGG+AGG | + | chr3.4:55872056-55872075 | None:intergenic | 40.0% | |
| CATGGATGAATGCTATGACA+TGG | - | chr3.4:55873267-55873286 | MS.gene04296:CDS | 40.0% | |
| CTCATGTTGAGAGATACTTC+TGG | - | chr3.4:55872493-55872512 | MS.gene04296:intron | 40.0% | |
| CTCCTTACTACAAAATCCAC+GGG | + | chr3.4:55871111-55871130 | None:intergenic | 40.0% | |
| CTCTTCAGCATCTACAACTT+TGG | + | chr3.4:55872682-55872701 | None:intergenic | 40.0% | |
| GGAAATAGGCTTAGATGGTT+TGG | - | chr3.4:55871069-55871088 | MS.gene04296:CDS | 40.0% | |
| GTTGTAGGGAATTGAGTGTT+GGG | - | chr3.4:55870901-55870920 | MS.gene04296:intron | 40.0% | |
| TAACCTGGCCGAATATCTTT+CGG | + | chr3.4:55872542-55872561 | None:intergenic | 40.0% | |
| TATGGGGAAAATCCATGTCT+TGG | + | chr3.4:55872029-55872048 | None:intergenic | 40.0% | |
| TCAATTCCCTACAACATCGT+CGG | + | chr3.4:55870896-55870915 | None:intergenic | 40.0% | |
| TCATCCAAAACCATCTTGCT+TGG | + | chr3.4:55872750-55872769 | None:intergenic | 40.0% | |
| TCGACTTTAACTACCTTGGT+TGG | - | chr3.4:55871835-55871854 | MS.gene04296:CDS | 40.0% | |
| TCTAGAGGATTCTTGGGTTT+GGG | + | chr3.4:55872717-55872736 | None:intergenic | 40.0% | |
| TGAATCCATCCGTGATTAAC+AGG | + | chr3.4:55871532-55871551 | None:intergenic | 40.0% | |
| TGGTAGGAAATAGGCTTAGA+TGG | - | chr3.4:55871064-55871083 | MS.gene04296:CDS | 40.0% | |
| TGTCTAAATGTAGGTAGAGG+AGG | - | chr3.4:55872305-55872324 | MS.gene04296:intron | 40.0% | |
| TGTTGTAGGGAATTGAGTGT+TGG | - | chr3.4:55870900-55870919 | MS.gene04296:intron | 40.0% | |
| TTCTTTCGTGACACTGAACA+AGG | - | chr3.4:55873111-55873130 | MS.gene04296:intron | 40.0% | |
| TTTCTCCTGTTAATCACGGA+TGG | - | chr3.4:55871524-55871543 | MS.gene04296:intron | 40.0% | |
| ! | ACTTACTGGAGGAAAGTATG+GGG | + | chr3.4:55872045-55872064 | None:intergenic | 40.0% |
| ! | CTTTGGTGCATCTTTAGTTG+TGG | + | chr3.4:55872631-55872650 | None:intergenic | 40.0% |
| ! | TAGCTTCAGTTTGCTTAACC+TGG | + | chr3.4:55872557-55872576 | None:intergenic | 40.0% |
| ! | TCTACAACTTTGGGCTTTTC+GGG | + | chr3.4:55872672-55872691 | None:intergenic | 40.0% |
| ! | TGTTTTCATGATTATGGCCG+CGG | - | chr3.4:55871573-55871592 | MS.gene04296:intron | 40.0% |
| ! | TTGGCTCCAGATTTTCAGAT+AGG | - | chr3.4:55870594-55870613 | MS.gene04296:CDS | 40.0% |
| ! | TTTAGGTTTCGCTCAACTCT+TGG | - | chr3.4:55872446-55872465 | MS.gene04296:intron | 40.0% |
| !! | AATTTCTCCGTTTGACTTGC+AGG | - | chr3.4:55873013-55873032 | MS.gene04296:CDS | 40.0% |
| !! | ACTTTGGAATCTCTTGTCCA+CGG | + | chr3.4:55873243-55873262 | None:intergenic | 40.0% |
| !! | CAGAAGTATCTCTCAACATG+AGG | + | chr3.4:55872495-55872514 | None:intergenic | 40.0% |
| !! | GTCATTGAAGAGAGCATTTG+AGG | - | chr3.4:55872338-55872357 | MS.gene04296:intron | 40.0% |
| !! | TGGTGGGTTTCTTCAAAGAA+TGG | - | chr3.4:55873135-55873154 | MS.gene04296:intron | 40.0% |
| AAAAGAGCCTCTCCCTCAAA+TGG | + | chr3.4:55873373-55873392 | None:intergenic | 45.0% | |
| AACAACTGAAGTTGTCACCG+CGG | + | chr3.4:55871593-55871612 | None:intergenic | 45.0% | |
| AACCAGAGAGAATATCCCTC+TGG | + | chr3.4:55873058-55873077 | None:intergenic | 45.0% | |
| AACCCCTTCACCTTAAATGG+AGG | + | chr3.4:55873211-55873230 | None:intergenic | 45.0% | |
| AGTAAGACCGACGATGTTGT+AGG | - | chr3.4:55870886-55870905 | MS.gene04296:intron | 45.0% | |
| ATCCAGAGGGATATTCTCTC+TGG | - | chr3.4:55873053-55873072 | MS.gene04296:intron | 45.0% | |
| ATCGCATTGCTCTCAAAGAC+AGG | + | chr3.4:55870813-55870832 | None:intergenic | 45.0% | |
| ATGACATGGAGCTGTATGAG+TGG | - | chr3.4:55873281-55873300 | MS.gene04296:CDS | 45.0% | |
| ATGTAGTTGACCCCACTTAG+TGG | - | chr3.4:55871277-55871296 | MS.gene04296:CDS | 45.0% | |
| CACAACCCCTTCACCTTAAA+TGG | + | chr3.4:55873214-55873233 | None:intergenic | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | + | chr3.4:55871292-55871311 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | - | chr3.4:55871289-55871308 | MS.gene04296:CDS | 45.0% | |
| CCAGAATCCTGCAAGTCAAA+CGG | + | chr3.4:55873023-55873042 | None:intergenic | 45.0% | |
| CTCAACATGAGGAAACTCTG+AGG | + | chr3.4:55872484-55872503 | None:intergenic | 45.0% | |
| CTCACAATACCTACCTGGTT+GGG | - | chr3.4:55872379-55872398 | MS.gene04296:intron | 45.0% | |
| CTTGGAGGAAGAAGATCTAG+AGG | + | chr3.4:55872732-55872751 | None:intergenic | 45.0% | |
| GTAAGACCGACGATGTTGTA+GGG | - | chr3.4:55870887-55870906 | MS.gene04296:intron | 45.0% | |
| GTCTTAGCAGATGGAATAGG+TGG | + | chr3.4:55872582-55872601 | None:intergenic | 45.0% | |
| TAATAAGCGTGGCAGAGAAG+AGG | - | chr3.4:55870948-55870967 | MS.gene04296:intron | 45.0% | |
| TACCTTTGATTGCGACCTCA+CGG | + | chr3.4:55872809-55872828 | None:intergenic | 45.0% | |
| TCCAAAACCATCTTGCTTGG+AGG | + | chr3.4:55872747-55872766 | None:intergenic | 45.0% | |
| TCTTCTTCCTCCAAGCAAGA+TGG | - | chr3.4:55872737-55872756 | MS.gene04296:intron | 45.0% | |
| TGAGAGATACTTCTGGACCT+TGG | - | chr3.4:55872500-55872519 | MS.gene04296:intron | 45.0% | |
| TGCATCTTTAGTTGTGGGCT+TGG | + | chr3.4:55872625-55872644 | None:intergenic | 45.0% | |
| TGGATCAGAGCCTCCATTTA+AGG | - | chr3.4:55873198-55873217 | MS.gene04296:CDS | 45.0% | |
| TGGATCATCTCCCATTGATC+AGG | - | chr3.4:55871394-55871413 | MS.gene04296:CDS | 45.0% | |
| TGGGACATGTATGATCCAGA+GGG | - | chr3.4:55873040-55873059 | MS.gene04296:intron | 45.0% | |
| TGTAGTTGACCCCACTTAGT+GGG | - | chr3.4:55871278-55871297 | MS.gene04296:CDS | 45.0% | |
| TTCGTGACACTGAACAAGGT+TGG | - | chr3.4:55873115-55873134 | MS.gene04296:intron | 45.0% | |
| TTGGGCGGTTAAGAACCAAT+AGG | - | chr3.4:55870919-55870938 | MS.gene04296:intron | 45.0% | |
| TTTCCGAAAGATATTCGGCC+AGG | - | chr3.4:55872536-55872555 | MS.gene04296:intron | 45.0% | |
| TTTGATACCGCTGTATGCAG+CGG | + | chr3.4:55870568-55870587 | None:intergenic | 45.0% | |
| TTTGCTGCAGTTGCACGATT+GGG | - | chr3.4:55871356-55871375 | MS.gene04296:CDS | 45.0% | |
| ! | AAGTTGTATCGGCCAAGACA+TGG | - | chr3.4:55872014-55872033 | MS.gene04296:intron | 45.0% |
| ! | AGAGCCTCCATTTAAGGTGA+AGG | - | chr3.4:55873204-55873223 | MS.gene04296:CDS | 45.0% |
| ! | AGCCTCCATTTAAGGTGAAG+GGG | - | chr3.4:55873206-55873225 | MS.gene04296:CDS | 45.0% |
| ! | ATTTGAGGGAGAGGCTCTTT+TGG | - | chr3.4:55873372-55873391 | MS.gene04296:intron | 45.0% |
| ! | CATTTAAGGTGAAGGGGTTG+TGG | - | chr3.4:55873212-55873231 | MS.gene04296:CDS | 45.0% |
| ! | GAAATTTGGCTGGTTCACCA+AGG | + | chr3.4:55872520-55872539 | None:intergenic | 45.0% |
| ! | GACCCGTGGATTTTGTAGTA+AGG | - | chr3.4:55871106-55871125 | MS.gene04296:CDS | 45.0% |
| ! | GAGCCTCCATTTAAGGTGAA+GGG | - | chr3.4:55873205-55873224 | MS.gene04296:CDS | 45.0% |
| ! | GTAGGTATTGTGAGCAAGGT+GGG | + | chr3.4:55872373-55872392 | None:intergenic | 45.0% |
| ! | TCCTCCAAGCAAGATGGTTT+TGG | - | chr3.4:55872743-55872762 | MS.gene04296:intron | 45.0% |
| ! | TGACACTGAACAAGGTTGGT+GGG | - | chr3.4:55873119-55873138 | MS.gene04296:intron | 45.0% |
| ! | TGTCTTTGAGAGCAATGCGA+TGG | - | chr3.4:55870812-55870831 | MS.gene04296:intron | 45.0% |
| ! | TTTTGAGCCATTTGAGGGAG+AGG | - | chr3.4:55873363-55873382 | MS.gene04296:intron | 45.0% |
| !! | CGTTTGACTTGCAGGATTCT+GGG | - | chr3.4:55873021-55873040 | MS.gene04296:CDS | 45.0% |
| !!! | GCAAGATGGTTTTGGATGAC+TGG | - | chr3.4:55872751-55872770 | MS.gene04296:intron | 45.0% |
| AACAGAATGCCCAACCAGGT+AGG | + | chr3.4:55872391-55872410 | None:intergenic | 50.0% | |
| ACGCTCTTTCTGAGCTTCGT+CGG | + | chr3.4:55873323-55873342 | None:intergenic | 50.0% | |
| AGGATTCTTGGGTTTGGGCT+TGG | + | chr3.4:55872712-55872731 | None:intergenic | 50.0% | |
| AGTTGTGGGCTTGGATTCCT+TGG | + | chr3.4:55872616-55872635 | None:intergenic | 50.0% | |
| CAATCGTGCAACTGCAGCAA+AGG | + | chr3.4:55871357-55871376 | None:intergenic | 50.0% | |
| CCATCAGGAGTTTCCAAGAC+CGG | + | chr3.4:55870789-55870808 | None:intergenic | 50.0% | |
| CCTTGCTCACAATACCTACC+TGG | - | chr3.4:55872374-55872393 | MS.gene04296:intron | 50.0% | |
| CTCTCAAAGACAGGACCATC+AGG | + | chr3.4:55870804-55870823 | None:intergenic | 50.0% | |
| CTGGGACATGTATGATCCAG+AGG | - | chr3.4:55873039-55873058 | MS.gene04296:intron | 50.0% | |
| CTTTGCTGCAGTTGCACGAT+TGG | - | chr3.4:55871355-55871374 | MS.gene04296:CDS | 50.0% | |
| GCTCACAATACCTACCTGGT+TGG | - | chr3.4:55872378-55872397 | MS.gene04296:intron | 50.0% | |
| GGATTCTTGGGTTTGGGCTT+GGG | + | chr3.4:55872711-55872730 | None:intergenic | 50.0% | |
| GGGGTCTTAGCAGATGGAAT+AGG | + | chr3.4:55872585-55872604 | None:intergenic | 50.0% | |
| GTGACACTGAACAAGGTTGG+TGG | - | chr3.4:55873118-55873137 | MS.gene04296:intron | 50.0% | |
| GTTGTGGGCTTGGATTCCTT+GGG | + | chr3.4:55872615-55872634 | None:intergenic | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | - | chr3.4:55871284-55871303 | MS.gene04296:CDS | 50.0% | |
| TTCAGGCCCACGTTGAACAA+TGG | - | chr3.4:55871952-55871971 | MS.gene04296:intron | 50.0% | |
| TTCCGTGAGGTCGCAATCAA+AGG | - | chr3.4:55872804-55872823 | MS.gene04296:intron | 50.0% | |
| TTCGTCGGAGATGTCAACCT+TGG | + | chr3.4:55873308-55873327 | None:intergenic | 50.0% | |
| TTCGTTACAGGTTCCGGTCT+TGG | - | chr3.4:55870773-55870792 | MS.gene04296:CDS | 50.0% | |
| ! | CCAGGTAGGTATTGTGAGCA+AGG | + | chr3.4:55872377-55872396 | None:intergenic | 50.0% |
| ! | GGTAGGTATTGTGAGCAAGG+TGG | + | chr3.4:55872374-55872393 | None:intergenic | 50.0% |
| !! | CCGTTTGACTTGCAGGATTC+TGG | - | chr3.4:55873020-55873039 | MS.gene04296:CDS | 50.0% |
| !! | CTGGCTCGCAAGTATGCTTT+TGG | - | chr3.4:55873160-55873179 | MS.gene04296:intron | 50.0% |
| !! | GTAGGGAATTGAGTGTTGGG+CGG | - | chr3.4:55870904-55870923 | MS.gene04296:intron | 50.0% |
| AGCAATGCGATGGCTCGCTA+TGG | - | chr3.4:55870822-55870841 | MS.gene04296:intron | 55.0% | |
| CACCAAGACCAACTTCCGTG+AGG | - | chr3.4:55872791-55872810 | MS.gene04296:intron | 55.0% | |
| CCGGTCTTGGAAACTCCTGA+TGG | - | chr3.4:55870786-55870805 | MS.gene04296:intron | 55.0% | |
| CTGATTGCCGCTGCATACAG+CGG | - | chr3.4:55870558-55870577 | MS.gene04296:CDS | 55.0% | |
| GATTGCGACCTCACGGAAGT+TGG | + | chr3.4:55872802-55872821 | None:intergenic | 55.0% | |
| GGAGCTGTATGAGTGGACCA+AGG | - | chr3.4:55873288-55873307 | MS.gene04296:CDS | 55.0% | |
| GGGTAACAGAATGCCCAACC+AGG | + | chr3.4:55872395-55872414 | None:intergenic | 55.0% | |
| TAGATCCTGCACGCTCCGAA+GGG | - | chr3.4:55870513-55870532 | MS.gene04296:CDS | 55.0% | |
| TGGGTAGGGGTCTTAGCAGA+TGG | + | chr3.4:55872591-55872610 | None:intergenic | 55.0% | |
| ! | AAGGGGTTGTGGCTTTTCCG+TGG | - | chr3.4:55873223-55873242 | MS.gene04296:CDS | 55.0% |
| ! | GACCTCACGGAAGTTGGTCT+TGG | + | chr3.4:55872796-55872815 | None:intergenic | 55.0% |
| ! | TGGATTCCTTGGGCTGGGTA+GGG | + | chr3.4:55872605-55872624 | None:intergenic | 55.0% |
| ! | TTGGATTCCTTGGGCTGGGT+AGG | + | chr3.4:55872606-55872625 | None:intergenic | 55.0% |
| GCGGCAGTGCTAACCCTTTC+AGG | + | chr3.4:55870720-55870739 | None:intergenic | 60.0% | |
| GGGCTTGGATTCCTTGGGCT+GGG | + | chr3.4:55872610-55872629 | None:intergenic | 60.0% | |
| GTAGATCCTGCACGCTCCGA+AGG | - | chr3.4:55870512-55870531 | MS.gene04296:CDS | 60.0% | |
| TAAGACCCCTACCCAGCCCA+AGG | - | chr3.4:55872596-55872615 | MS.gene04296:intron | 60.0% | |
| TGGGCTTGGATTCCTTGGGC+TGG | + | chr3.4:55872611-55872630 | None:intergenic | 60.0% | |
| TGTTTCCCTTCGGAGCGTGC+AGG | + | chr3.4:55870521-55870540 | None:intergenic | 60.0% | |
| ! | GGATTCCTTGGGCTGGGTAG+GGG | + | chr3.4:55872604-55872623 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 55870416 | 55873414 | 55870416 | ID=MS.gene04296 |
| chr3.4 | mRNA | 55870416 | 55873414 | 55870416 | ID=MS.gene04296.t1;Parent=MS.gene04296 |
| chr3.4 | exon | 55873406 | 55873414 | 55873406 | ID=MS.gene04296.t1.exon1;Parent=MS.gene04296.t1 |
| chr3.4 | CDS | 55873406 | 55873414 | 55873406 | ID=cds.MS.gene04296.t1;Parent=MS.gene04296.t1 |
| chr3.4 | exon | 55873165 | 55873314 | 55873165 | ID=MS.gene04296.t1.exon2;Parent=MS.gene04296.t1 |
| chr3.4 | CDS | 55873165 | 55873314 | 55873165 | ID=cds.MS.gene04296.t1;Parent=MS.gene04296.t1 |
| chr3.4 | exon | 55872987 | 55873047 | 55872987 | ID=MS.gene04296.t1.exon3;Parent=MS.gene04296.t1 |
| chr3.4 | CDS | 55872987 | 55873047 | 55872987 | ID=cds.MS.gene04296.t1;Parent=MS.gene04296.t1 |
| chr3.4 | exon | 55872415 | 55872464 | 55872415 | ID=MS.gene04296.t1.exon4;Parent=MS.gene04296.t1 |
| chr3.4 | CDS | 55872415 | 55872464 | 55872415 | ID=cds.MS.gene04296.t1;Parent=MS.gene04296.t1 |
| chr3.4 | exon | 55871772 | 55871873 | 55871772 | ID=MS.gene04296.t1.exon5;Parent=MS.gene04296.t1 |
| chr3.4 | CDS | 55871772 | 55871873 | 55871772 | ID=cds.MS.gene04296.t1;Parent=MS.gene04296.t1 |
| chr3.4 | exon | 55871005 | 55871512 | 55871005 | ID=MS.gene04296.t1.exon6;Parent=MS.gene04296.t1 |
| chr3.4 | CDS | 55871005 | 55871512 | 55871005 | ID=cds.MS.gene04296.t1;Parent=MS.gene04296.t1 |
| chr3.4 | exon | 55870416 | 55870795 | 55870416 | ID=MS.gene04296.t1.exon7;Parent=MS.gene04296.t1 |
| chr3.4 | CDS | 55870416 | 55870795 | 55870416 | ID=cds.MS.gene04296.t1;Parent=MS.gene04296.t1 |
| Gene Sequence |
| Protein sequence |
