AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95042


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95042.t1 MTR_4g134770 98.438 384 5 1 1 383 36 419 0.0 781
MS.gene95042.t1 MTR_4g134770 98.438 384 5 1 1 383 1 384 0.0 778
MS.gene95042.t1 MTR_3g058940 83.333 384 63 1 1 383 36 419 0.0 670
MS.gene95042.t1 MTR_2g005570 84.595 383 57 1 1 383 38 418 0.0 655
MS.gene95042.t1 MTR_2g005570 84.334 383 58 1 1 383 38 418 0.0 654
MS.gene95042.t1 MTR_3g064700 33.333 132 73 4 5 125 40 167 5.48e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95042.t1 AT1G09640 77.604 384 80 3 1 383 36 414 0.0 600
MS.gene95042.t1 AT1G57720 77.604 384 79 4 1 383 36 413 0.0 585
MS.gene95042.t1 AT1G57720 77.604 384 79 4 1 383 36 413 0.0 585
MS.gene95042.t1 AT1G09640 72.781 169 45 1 1 168 36 204 1.52e-84 258
MS.gene95042.t1 AT1G09640 84.932 73 10 1 312 383 193 265 3.90e-35 130
MS.gene95042.t1 AT2G30870 31.387 137 77 4 1 125 35 166 1.61e-12 66.6

Find 96 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTATCTTGCAGGATTT+TGG 0.085089 8.2:-141362 MS.gene95042:intron
CTCTTCTTCTGCTTCTTCTT+TGG 0.092984 8.2:+142159 None:intergenic
CATTCATCCATCACAAATTT+AGG 0.098053 8.2:+141126 None:intergenic
CACAACCCCTTTACCTTAAA+AGG 0.198539 8.2:+141171 None:intergenic
GGGATTCTTGGGTTTGGGCT+TGG 0.216459 8.2:+142132 None:intergenic
TCTTCTTCTGCTTCTTCTTT+GGG 0.226224 8.2:+142160 None:intergenic
GGATTCTTGGGTTTGGGCTT+GGG 0.239221 8.2:+142133 None:intergenic
CCAAACTTCCGCAAGATATT+AGG 0.289841 8.2:-142307 MS.gene95042:CDS
TTAGCCCGCAAGTATGCTTT+TGG 0.302747 8.2:-141222 MS.gene95042:CDS
ATTCATCCATCACAAATTTA+GGG 0.306943 8.2:+141127 None:intergenic
CCTAATATCTTGCGGAAGTT+TGG 0.312009 8.2:+142307 None:intergenic
AAGAAGATCAAGGGGATTCT+TGG 0.325325 8.2:+142120 None:intergenic
ATCAAGGGGATTCTTGGGTT+TGG 0.332225 8.2:+142126 None:intergenic
CTCTATCCAAGATTGGGATA+TGG 0.336268 8.2:-143326 MS.gene95042:CDS
GGTAAACGACGAACCCAAAA+AGG 0.338365 8.2:-142206 MS.gene95042:CDS
TCAAGGGGATTCTTGGGTTT+GGG 0.341781 8.2:+142127 None:intergenic
TTCCCAGCCTAAAGATTCTA+AGG 0.359278 8.2:-142233 MS.gene95042:CDS
GCTGAAGAGATTGCAATTAC+TGG 0.361731 8.2:-142520 MS.gene95042:CDS
ATCCTGAAGGGTACTCTCTC+TGG 0.365424 8.2:-141329 MS.gene95042:CDS
CTCTCAAAGACAGGACCATC+AGG 0.372688 8.2:+143581 None:intergenic
TCTATCCAAGATTGGGATAT+GGG 0.385860 8.2:-143325 MS.gene95042:CDS
AAGCATTCAAAGCTCTCTTC+AGG 0.386435 8.2:+142497 None:intergenic
CTTTCCAAAAGCATACTTGC+GGG 0.392465 8.2:+141218 None:intergenic
TCCTCCAAGCAAGATGATAC+TGG 0.393435 8.2:-142098 MS.gene95042:CDS
TCTTGGCAAGGTTCCTGTCT+TGG 0.398617 8.2:-143609 MS.gene95042:CDS
CTCAACAACAACACCTTGTA+TGG 0.403217 8.2:-143530 MS.gene95042:CDS
CTCATGTCGAGAGATACTTT+TGG 0.403977 8.2:-142345 MS.gene95042:CDS
CAGCTTCAGCCTGCTTGACT+TGG 0.404975 8.2:+142284 None:intergenic
TAAACCCCATATCCCAATCT+TGG 0.413330 8.2:+143320 None:intergenic
AGAAGATCAAGGGGATTCTT+GGG 0.421200 8.2:+142121 None:intergenic
CAAGTGGCTCTATCCAAGAT+TGG 0.421551 8.2:-143333 MS.gene95042:CDS
AACCAGAGAGAGTACCCTTC+AGG 0.429409 8.2:+141327 None:intergenic
CATCTCAGATGAAGCTCAAA+AGG 0.452428 8.2:-141067 MS.gene95042:CDS
TGGCCTTAGAATCTTTAGGC+TGG 0.476785 8.2:+142230 None:intergenic
CAAAGAAGAAGCAGAAGAAG+AGG 0.479600 8.2:-142158 MS.gene95042:CDS
GCCTCCAATACTTACCTAGT+TGG 0.484176 8.2:-142460 MS.gene95042:CDS
AAGTGGCTCTATCCAAGATT+GGG 0.485075 8.2:-143332 MS.gene95042:CDS
TTTGGGTTCGTCGTTTACCT+TGG 0.489504 8.2:+142210 None:intergenic
CCATCAGGGGTTTCCAAGAC+AGG 0.490090 8.2:+143596 None:intergenic
ACGACATGCAATTTGTATGT+TGG 0.496799 8.2:-142409 MS.gene95042:CDS
TGGTGGATTTCTTCAGCGGA+TGG 0.498176 8.2:-141247 MS.gene95042:CDS
GCAAGATGATACTGGATGAC+TGG 0.502140 8.2:-142090 MS.gene95042:CDS
TTAGAATCTTTAGGCTGGGA+AGG 0.503743 8.2:+142235 None:intergenic
ACCTTGGCCTTAGAATCTTT+AGG 0.503994 8.2:+142226 None:intergenic
TCCAGTATCATCTTGCTTGG+AGG 0.510179 8.2:+142097 None:intergenic
TCATCCAGTATCATCTTGCT+TGG 0.513427 8.2:+142094 None:intergenic
TTTCTCGACATGAATCCTCT+TGG 0.518699 8.2:-143626 MS.gene95042:CDS
ATAGCATTGCTCTCAAAGAC+AGG 0.521702 8.2:+143572 None:intergenic
GCCTAAAGATTCTAAGGCCA+AGG 0.527634 8.2:-142227 MS.gene95042:CDS
GTGGCCAACTAGGTAAGTAT+TGG 0.528399 8.2:+142456 None:intergenic
TTCAGAGAGGTTGCTATCAA+AGG 0.531471 8.2:-142037 MS.gene95042:intron
GATATTAGGCCAAGTCAAGC+AGG 0.533721 8.2:-142293 MS.gene95042:CDS
GCCAACTAGGTAAGTATTGG+AGG 0.535307 8.2:+142459 None:intergenic
CCTGTCTTGGAAACCCCTGA+TGG 0.535349 8.2:-143596 MS.gene95042:CDS
GGATTCATGTCGAGAAATTG+AGG 0.540187 8.2:+143632 None:intergenic
GGCCTTAGAATCTTTAGGCT+GGG 0.546742 8.2:+142231 None:intergenic
AGAAATCCCTAAATTTGTGA+TGG 0.546910 8.2:-141133 MS.gene95042:CDS
ATGTCGTTATGATGTCAGCC+AGG 0.547555 8.2:+142425 None:intergenic
GGGTGACAGAGTGGCCAACT+AGG 0.557957 8.2:+142446 None:intergenic
CGACATGAATCCTCTTGGCA+AGG 0.562703 8.2:-143621 MS.gene95042:CDS
ATGACATGGAGCTGTATGAA+TGG 0.563205 8.2:-141101 MS.gene95042:CDS
CTAGGTAAGTATTGGAGGCA+AGG 0.570319 8.2:+142464 None:intergenic
TTTGGAAAGATGCTTGTGAT+CGG 0.574318 8.2:-141204 MS.gene95042:CDS
TGCTTGGAGGAAGAAGATCA+AGG 0.574810 8.2:+142110 None:intergenic
GCTTGGAGGAAGAAGATCAA+GGG 0.576087 8.2:+142111 None:intergenic
ATTTAGGGATTTCTTGCCCA+CGG 0.579224 8.2:+141142 None:intergenic
TGGGACATGTATGATCCTGA+AGG 0.580791 8.2:-141342 MS.gene95042:CDS
GTGACATTGAACAAGGTTGG+TGG 0.584238 8.2:-141264 MS.gene95042:CDS
TTTGTGACATTGAACAAGGT+TGG 0.585414 8.2:-141267 MS.gene95042:CDS
AGGTTGGTGGATTTCTTCAG+CGG 0.591058 8.2:-141251 MS.gene95042:CDS
TGACTTGGCCTAATATCTTG+CGG 0.591227 8.2:+142299 None:intergenic
GGCTTCTTTACAGATTGAAG+AGG 0.591543 8.2:+142256 None:intergenic
TCTTTCCAAAAGCATACTTG+CGG 0.593669 8.2:+141217 None:intergenic
TTGATTCTAATATTAACAAG+TGG 0.595616 8.2:-143349 MS.gene95042:CDS
GAAGTTTGGCTGATTGACCA+AGG 0.597999 8.2:+142321 None:intergenic
AGTTGGCCACTCTGTCACCC+TGG 0.598292 8.2:-142443 MS.gene95042:CDS
TTCAGGCTCACATTGAACAA+TGG 0.606079 8.2:-143394 MS.gene95042:intron
CTATCCAAGATTGGGATATG+GGG 0.607195 8.2:-143324 MS.gene95042:CDS
AGAGAAGACTTACTGGAGGA+AGG 0.607826 8.2:+143297 None:intergenic
GGGACATGTATGATCCTGAA+GGG 0.608052 8.2:-141341 MS.gene95042:CDS
AATATTAGAATCAATCTCCA+AGG 0.612021 8.2:+143358 None:intergenic
CAAAAGTATCTCTCGACATG+AGG 0.612573 8.2:+142346 None:intergenic
AATCAAAGAAGAACCATACA+AGG 0.618859 8.2:+143517 None:intergenic
TCTCAAAGACAGGACCATCA+GGG 0.621025 8.2:+143582 None:intergenic
CTTGGAGGAAGAAGATCAAG+GGG 0.623330 8.2:+142112 None:intergenic
CTCAAAGACAGGACCATCAG+GGG 0.627628 8.2:+143583 None:intergenic
TTCCTTTGTGACATTGAACA+AGG 0.627797 8.2:-141271 MS.gene95042:CDS
AACCCCTTTACCTTAAAAGG+TGG 0.642602 8.2:+141174 None:intergenic
AAGCACTTGGCATCCAACAG+AGG 0.653957 8.2:+140997 None:intergenic
AAGACAGGAACCTTGCCAAG+AGG 0.659474 8.2:+143611 None:intergenic
TGTCAGCCAGGGTGACAGAG+TGG 0.662886 8.2:+142437 None:intergenic
AACCTTGTTCAATGTCACAA+AGG 0.664832 8.2:+141269 None:intergenic
CTCGACATGAGGAAACTCTG+AGG 0.687154 8.2:+142357 None:intergenic
TGTCGTTATGATGTCAGCCA+GGG 0.694507 8.2:+142426 None:intergenic
GGAGCTGTATGAATGGACAA+AGG 0.712876 8.2:-141094 MS.gene95042:CDS
GATGGATGAATGCTATGACA+TGG 0.718496 8.2:-141115 MS.gene95042:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACATATGCAAATATA+AGG - chr8.2:142846-142865 MS.gene95042:intron 15.0%
!! CAAAGAAAAAAATATTTGTT+GGG - chr8.2:141751-141770 MS.gene95042:intron 15.0%
!! GTAGCTAAATATATATTATT+GGG - chr8.2:141698-141717 MS.gene95042:intron 15.0%
!! TCAAAGAAAAAAATATTTGT+TGG - chr8.2:141750-141769 MS.gene95042:intron 15.0%
!!! AAAGAAAAAAATATTTGTTG+GGG - chr8.2:141752-141771 MS.gene95042:intron 15.0%
!!! TTAAACAAGTGAATATATTT+TGG - chr8.2:141632-141651 MS.gene95042:intron 15.0%
!! AAAAATGAAAAAAATCAGCT+TGG - chr8.2:143120-143139 MS.gene95042:intron 20.0%
!! AAAATGAAAAAAATCAGCTT+GGG - chr8.2:143121-143140 MS.gene95042:intron 20.0%
!! ATTGAAAACAATAACATCAA+AGG + chr8.2:142649-142668 None:intergenic 20.0%
!! GGTAGCTAAATATATATTAT+TGG - chr8.2:141697-141716 MS.gene95042:intron 20.0%
!! TTGAAAACAATAACATCAAA+GGG + chr8.2:142648-142667 None:intergenic 20.0%
!! TTGATTCTAATATTAACAAG+TGG - chr8.2:141294-141313 MS.gene95042:CDS 20.0%
!!! GATTTTTATAAGACATACAT+AGG - chr8.2:143242-143261 MS.gene95042:intron 20.0%
!!! TTTAAAATAAGTTTGGGATA+CGG + chr8.2:141448-141467 None:intergenic 20.0%
! AAATTTCACAATGTACAATC+AGG + chr8.2:143189-143208 None:intergenic 25.0%
! AATATTAGAATCAATCTCCA+AGG + chr8.2:141288-141307 None:intergenic 25.0%
! AATTTCACAATGTACAATCA+GGG + chr8.2:143188-143207 None:intergenic 25.0%
! ACTATGAGTACCAAATATTT+AGG + chr8.2:142902-142921 None:intergenic 25.0%
! ATTCATCCATCACAAATTTA+GGG + chr8.2:143519-143538 None:intergenic 25.0%
! ATTGTACATTGTGAAATTTG+CGG - chr8.2:143190-143209 MS.gene95042:intron 25.0%
! CTATGAGTACCAAATATTTA+GGG + chr8.2:142901-142920 None:intergenic 25.0%
! TAAAGTATATGTGTCAGATT+TGG + chr8.2:141929-141948 None:intergenic 25.0%
! TCAGTTCAATGTTTCATATA+TGG - chr8.2:143091-143110 MS.gene95042:intron 25.0%
! TCATAGAAATAAACCAACTT+GGG + chr8.2:141869-141888 None:intergenic 25.0%
! TGAAAACAATAACATCAAAG+GGG + chr8.2:142647-142666 None:intergenic 25.0%
! TGTCAAAAATCAGTAGAAAT+AGG + chr8.2:141662-141681 None:intergenic 25.0%
! TTAATTATTTGTCTGGATGA+AGG - chr8.2:142101-142120 MS.gene95042:CDS 25.0%
! TTCAATGTTTCATATATGGA+GGG - chr8.2:143095-143114 MS.gene95042:intron 25.0%
! TTCATAGAAATAAACCAACT+TGG + chr8.2:141870-141889 None:intergenic 25.0%
!! TTGACAAATAAACTCTTTTG+CGG - chr8.2:141676-141695 MS.gene95042:intron 25.0%
!!! TTATGTGTGTTTGTTGTTAT+GGG + chr8.2:142878-142897 None:intergenic 25.0%
AATCAAAGAAGAACCATACA+AGG + chr8.2:141129-141148 None:intergenic 30.0%
AGAAATCCCTAAATTTGTGA+TGG - chr8.2:143510-143529 MS.gene95042:intron 30.0%
ATTTCACAATGTACAATCAG+GGG + chr8.2:143187-143206 None:intergenic 30.0%
CACACATAACCCTAAATATT+TGG - chr8.2:142889-142908 MS.gene95042:intron 30.0%
CATTCATCCATCACAAATTT+AGG + chr8.2:143520-143539 None:intergenic 30.0%
CCAGACAAATAATTAAGATC+AGG + chr8.2:142097-142116 None:intergenic 30.0%
CCTGATCTTAATTATTTGTC+TGG - chr8.2:142094-142113 MS.gene95042:CDS 30.0%
GAAAACAATAACATCAAAGG+GGG + chr8.2:142646-142665 None:intergenic 30.0%
GAAATCATATGTAGAAACCA+TGG + chr8.2:143012-143031 None:intergenic 30.0%
GTAAATAAACCTATGAAGCA+CGG + chr8.2:142024-142043 None:intergenic 30.0%
GTTCAATGTTTCATATATGG+AGG - chr8.2:143094-143113 MS.gene95042:intron 30.0%
TTCAGTGTATGGAAAATGTT+GGG + chr8.2:141373-141392 None:intergenic 30.0%
TTTAAATCCTTCTATCTTGC+AGG - chr8.2:143274-143293 MS.gene95042:intron 30.0%
! AAGATTTTGAACCTTTTGAG+GGG - chr8.2:143620-143639 MS.gene95042:CDS 30.0%
! ATCTTTTTCCTTTCTTACCA+TGG - chr8.2:142992-143011 MS.gene95042:intron 30.0%
! GAAGATTTTGAACCTTTTGA+GGG - chr8.2:143619-143638 MS.gene95042:CDS 30.0%
! GATTTCTTCTTCTTTTCTAC+TGG - chr8.2:143026-143045 MS.gene95042:intron 30.0%
! TGAAGATTTTGAACCTTTTG+AGG - chr8.2:143618-143637 MS.gene95042:CDS 30.0%
!! AGAAAAGAAAAGTATTGCAG+CGG + chr8.2:142939-142958 None:intergenic 30.0%
!! ATGGATTGATTTTTCATCCT+TGG - chr8.2:141268-141287 MS.gene95042:CDS 30.0%
!! GTTATGTGTGTTTGTTGTTA+TGG + chr8.2:142879-142898 None:intergenic 30.0%
!! TGGTTTATTTCTATGAAGCA+CGG - chr8.2:141873-141892 MS.gene95042:intron 30.0%
AACCTTGTTCAATGTCACAA+AGG + chr8.2:143377-143396 None:intergenic 35.0%
ACGACATGCAATTTGTATGT+TGG - chr8.2:142234-142253 MS.gene95042:CDS 35.0%
CAAAATTCACTCGCTACAAA+CGG + chr8.2:142786-142805 None:intergenic 35.0%
CACTAAAAACAACTTCAGAG+AGG - chr8.2:142593-142612 MS.gene95042:intron 35.0%
CTTAAGATTCTCTGACATGA+GGG + chr8.2:141814-141833 None:intergenic 35.0%
GGAAAAAGATGAAGAAACCA+TGG + chr8.2:142982-143001 None:intergenic 35.0%
GTTCAGTGTATGGAAAATGT+TGG + chr8.2:141374-141393 None:intergenic 35.0%
TCAGTGTATGGAAAATGTTG+GGG + chr8.2:141372-141391 None:intergenic 35.0%
TCTAAATCGAGTTCAGTGTA+TGG + chr8.2:141384-141403 None:intergenic 35.0%
TCTATCCAAGATTGGGATAT+GGG - chr8.2:141318-141337 MS.gene95042:CDS 35.0%
TCTTAAGATTCTCTGACATG+AGG + chr8.2:141815-141834 None:intergenic 35.0%
TCTTCTTCTGCTTCTTCTTT+GGG + chr8.2:142486-142505 None:intergenic 35.0%
TCTTTCTTCTTACAGTTCCA+TGG - chr8.2:142962-142981 MS.gene95042:intron 35.0%
TGTAGAAACCATGGTAAGAA+AGG + chr8.2:143003-143022 None:intergenic 35.0%
TTAAGATTCTCTGACATGAG+GGG + chr8.2:141813-141832 None:intergenic 35.0%
TTCCTTTGTGACATTGAACA+AGG - chr8.2:143372-143391 MS.gene95042:CDS 35.0%
TTGATTCATTCTCTGCATTC+AGG - chr8.2:141232-141251 MS.gene95042:CDS 35.0%
TTTGGAAAGATGCTTGTGAT+CGG - chr8.2:143439-143458 MS.gene95042:intron 35.0%
TTTGTGACATTGAACAAGGT+TGG - chr8.2:143376-143395 MS.gene95042:CDS 35.0%
! AATTTTGTGATTGTACGCAG+GGG - chr8.2:142666-142685 MS.gene95042:intron 35.0%
! CAATTTTGTGATTGTACGCA+GGG - chr8.2:142665-142684 MS.gene95042:intron 35.0%
! CTTCTATCTTGCAGGATTTT+GGG - chr8.2:143282-143301 MS.gene95042:intron 35.0%
! TCAATTTTGTGATTGTACGC+AGG - chr8.2:142664-142683 MS.gene95042:intron 35.0%
! TCTTTCCAAAAGCATACTTG+CGG + chr8.2:143429-143448 None:intergenic 35.0%
! TGATTTTCGCACATTGTTAG+CGG - chr8.2:141961-141980 MS.gene95042:intron 35.0%
!! AGATTTTGAACCTTTTGAGG+GGG - chr8.2:143621-143640 MS.gene95042:CDS 35.0%
AAACCTATGAAGCACGGATA+CGG + chr8.2:142018-142037 None:intergenic 40.0%
AACCCCTTTACCTTAAAAGG+TGG + chr8.2:143472-143491 None:intergenic 40.0%
AAGAAGATCAAGGGGATTCT+TGG + chr8.2:142526-142545 None:intergenic 40.0%
AAGCATTCAAAGCTCTCTTC+AGG + chr8.2:142149-142168 None:intergenic 40.0%
AAGCTAGCTATGTTTCCACA+AGG - chr8.2:141510-141529 MS.gene95042:intron 40.0%
AGAAGATCAAGGGGATTCTT+GGG + chr8.2:142525-142544 None:intergenic 40.0%
AGCTAGCTATGTTTCCACAA+GGG - chr8.2:141511-141530 MS.gene95042:intron 40.0%
ATAGCATTGCTCTCAAAGAC+AGG + chr8.2:141074-141093 None:intergenic 40.0%
ATGACATGGAGCTGTATGAA+TGG - chr8.2:143542-143561 MS.gene95042:CDS 40.0%
ATTTAAATTTGGCCCCCTTG+TGG + chr8.2:141528-141547 None:intergenic 40.0%
ATTTAGGGATTTCTTGCCCA+CGG + chr8.2:143504-143523 None:intergenic 40.0%
CAAAGAAGAAGCAGAAGAAG+AGG - chr8.2:142485-142504 MS.gene95042:CDS 40.0%
CACAACCCCTTTACCTTAAA+AGG + chr8.2:143475-143494 None:intergenic 40.0%
CACATATACTTCACCCAAGT+TGG - chr8.2:141853-141872 MS.gene95042:intron 40.0%
CATCTCAGATGAAGCTCAAA+AGG - chr8.2:143576-143595 MS.gene95042:CDS 40.0%
CATTGTGAAATTTGCGGTTC+TGG - chr8.2:143196-143215 MS.gene95042:intron 40.0%
CCAAAATCCTGCAAGATAGA+AGG + chr8.2:143284-143303 None:intergenic 40.0%
CCAAACTTCCGCAAGATATT+AGG - chr8.2:142336-142355 MS.gene95042:CDS 40.0%
CCTAATATCTTGCGGAAGTT+TGG + chr8.2:142339-142358 None:intergenic 40.0%
CGGATCTGGACTCAAAATAT+TGG - chr8.2:142689-142708 MS.gene95042:intron 40.0%
CTATCCAAGATTGGGATATG+GGG - chr8.2:141319-141338 MS.gene95042:CDS 40.0%
CTCAACAACAACACCTTGTA+TGG - chr8.2:141113-141132 MS.gene95042:CDS 40.0%
CTCTATCCAAGATTGGGATA+TGG - chr8.2:141317-141336 MS.gene95042:CDS 40.0%
CTCTTCTTCTGCTTCTTCTT+TGG + chr8.2:142487-142506 None:intergenic 40.0%
CTGGACTCAAAATATTGGTG+AGG - chr8.2:142694-142713 MS.gene95042:intron 40.0%
CTTGGGTGAAGTATATGTGT+CGG + chr8.2:141852-141871 None:intergenic 40.0%
GATGGATGAATGCTATGACA+TGG - chr8.2:143528-143547 MS.gene95042:CDS 40.0%
GCTGAAGAGATTGCAATTAC+TGG - chr8.2:142123-142142 MS.gene95042:CDS 40.0%
GGATTCATGTCGAGAAATTG+AGG + chr8.2:141014-141033 None:intergenic 40.0%
GGCTTCTTTACAGATTGAAG+AGG + chr8.2:142390-142409 None:intergenic 40.0%
GTACTCTGCTTGTGATTGAT+GGG - chr8.2:143048-143067 MS.gene95042:intron 40.0%
TAAACCCCATATCCCAATCT+TGG + chr8.2:141326-141345 None:intergenic 40.0%
TCATCCAGTATCATCTTGCT+TGG + chr8.2:142552-142571 None:intergenic 40.0%
TGAAAAAAATCAGCTTGGGC+TGG - chr8.2:143125-143144 MS.gene95042:intron 40.0%
TTAGAATCTTTAGGCTGGGA+AGG + chr8.2:142411-142430 None:intergenic 40.0%
TTCAGAGAGGTTGCTATCAA+AGG - chr8.2:142606-142625 MS.gene95042:intron 40.0%
TTCAGGCTCACATTGAACAA+TGG - chr8.2:141249-141268 MS.gene95042:CDS 40.0%
TTCCCAGCCTAAAGATTCTA+AGG - chr8.2:142410-142429 MS.gene95042:CDS 40.0%
TTTCTCGACATGAATCCTCT+TGG - chr8.2:141017-141036 MS.gene95042:CDS 40.0%
! AAGTGGCTCTATCCAAGATT+GGG - chr8.2:141311-141330 MS.gene95042:CDS 40.0%
! AATAAGTTTGGGATACGGTG+TGG + chr8.2:141443-141462 None:intergenic 40.0%
! CCTTCTATCTTGCAGGATTT+TGG - chr8.2:143281-143300 MS.gene95042:intron 40.0%
! CGAAGCTATTTGTTGCCAAA+GGG + chr8.2:141790-141809 None:intergenic 40.0%
! CGTTTGTAGCGAGTGAATTT+TGG - chr8.2:142784-142803 MS.gene95042:intron 40.0%
! CTCATGTCGAGAGATACTTT+TGG - chr8.2:142298-142317 MS.gene95042:CDS 40.0%
! CTTTCCAAAAGCATACTTGC+GGG + chr8.2:143428-143447 None:intergenic 40.0%
! TGACTTGGCCTAATATCTTG+CGG + chr8.2:142347-142366 None:intergenic 40.0%
!! ACCTTGGCCTTAGAATCTTT+AGG + chr8.2:142420-142439 None:intergenic 40.0%
!! CAAAAGTATCTCTCGACATG+AGG + chr8.2:142300-142319 None:intergenic 40.0%
!! GTGTTTGTTGTTATGGGCTT+GGG + chr8.2:142872-142891 None:intergenic 40.0%
!! TGTGTTTGTTGTTATGGGCT+TGG + chr8.2:142873-142892 None:intergenic 40.0%
!!! AGCCACCTTTTAAGGTAAAG+GGG - chr8.2:143467-143486 MS.gene95042:intron 40.0%
!!! CTTTTAAGGTAAAGGGGTTG+TGG - chr8.2:143473-143492 MS.gene95042:intron 40.0%
!!! GAGCCACCTTTTAAGGTAAA+GGG - chr8.2:143466-143485 MS.gene95042:intron 40.0%
!!! TGAGCCACCTTTTAAGGTAA+AGG - chr8.2:143465-143484 MS.gene95042:intron 40.0%
AAACGACGAACCCAAAAAGG+AGG - chr8.2:142440-142459 MS.gene95042:CDS 45.0%
AGAGAAGACTTACTGGAGGA+AGG + chr8.2:141349-141368 None:intergenic 45.0%
ATCAAGGGGATTCTTGGGTT+TGG + chr8.2:142520-142539 None:intergenic 45.0%
ATGTCGTTATGATGTCAGCC+AGG + chr8.2:142221-142240 None:intergenic 45.0%
CAGATGTGTATGTCAGACAG+CGG - chr8.2:141485-141504 MS.gene95042:intron 45.0%
CTAGCTATGTTTCCACAAGG+GGG - chr8.2:141513-141532 MS.gene95042:intron 45.0%
CTTGGAGGAAGAAGATCAAG+GGG + chr8.2:142534-142553 None:intergenic 45.0%
GAAGTTTGGCTGATTGACCA+AGG + chr8.2:142325-142344 None:intergenic 45.0%
GATATTAGGCCAAGTCAAGC+AGG - chr8.2:142350-142369 MS.gene95042:CDS 45.0%
GCAAGATGATACTGGATGAC+TGG - chr8.2:142553-142572 MS.gene95042:intron 45.0%
GCCTCCAATACTTACCTAGT+TGG - chr8.2:142183-142202 MS.gene95042:CDS 45.0%
GCTAGCTATGTTTCCACAAG+GGG - chr8.2:141512-141531 MS.gene95042:intron 45.0%
GCTTGGAGGAAGAAGATCAA+GGG + chr8.2:142535-142554 None:intergenic 45.0%
GGAGCTGTATGAATGGACAA+AGG - chr8.2:143549-143568 MS.gene95042:CDS 45.0%
GGCCTTAGAATCTTTAGGCT+GGG + chr8.2:142415-142434 None:intergenic 45.0%
GGGACATGTATGATCCTGAA+GGG - chr8.2:143302-143321 MS.gene95042:intron 45.0%
GGTAAACGACGAACCCAAAA+AGG - chr8.2:142437-142456 MS.gene95042:CDS 45.0%
GGTACTCTGCTTGTGATTGA+TGG - chr8.2:143047-143066 MS.gene95042:intron 45.0%
GTGACATTGAACAAGGTTGG+TGG - chr8.2:143379-143398 MS.gene95042:CDS 45.0%
GTGGCCAACTAGGTAAGTAT+TGG + chr8.2:142190-142209 None:intergenic 45.0%
TCAAGGGGATTCTTGGGTTT+GGG + chr8.2:142519-142538 None:intergenic 45.0%
TCACAATGTACAATCAGGGG+CGG + chr8.2:143184-143203 None:intergenic 45.0%
TCCAGTATCATCTTGCTTGG+AGG + chr8.2:142549-142568 None:intergenic 45.0%
TCCTCCAAGCAAGATGATAC+TGG - chr8.2:142545-142564 MS.gene95042:intron 45.0%
TCTCAAAGACAGGACCATCA+GGG + chr8.2:141064-141083 None:intergenic 45.0%
TGCTTGGAGGAAGAAGATCA+AGG + chr8.2:142536-142555 None:intergenic 45.0%
TGGGACATGTATGATCCTGA+AGG - chr8.2:143301-143320 MS.gene95042:intron 45.0%
TGTCAATGTGTCAGTGTCTG+TGG - chr8.2:141984-142003 MS.gene95042:intron 45.0%
TGTCGTTATGATGTCAGCCA+GGG + chr8.2:142220-142239 None:intergenic 45.0%
TTGTTGCCAAAGGGTAGCTT+TGG + chr8.2:141781-141800 None:intergenic 45.0%
! ACCTTCTTGGCCTCCTTTTT+GGG + chr8.2:142453-142472 None:intergenic 45.0%
! CAAGTGGCTCTATCCAAGAT+TGG - chr8.2:141310-141329 MS.gene95042:CDS 45.0%
! CGAGAGATACTTTTGGACCT+TGG - chr8.2:142305-142324 MS.gene95042:CDS 45.0%
! GCGAAGCTATTTGTTGCCAA+AGG + chr8.2:141791-141810 None:intergenic 45.0%
! GCTTCTTCTTTGGGCTTTTC+TGG + chr8.2:142477-142496 None:intergenic 45.0%
! TGGCCTTAGAATCTTTAGGC+TGG + chr8.2:142416-142435 None:intergenic 45.0%
! TTAGCCCGCAAGTATGCTTT+TGG - chr8.2:143421-143440 MS.gene95042:intron 45.0%
! TTTGGGTTCGTCGTTTACCT+TGG + chr8.2:142436-142455 None:intergenic 45.0%
!! AGGTTGGTGGATTTCTTCAG+CGG - chr8.2:143392-143411 MS.gene95042:CDS 45.0%
!! CTAGGTAAGTATTGGAGGCA+AGG + chr8.2:142182-142201 None:intergenic 45.0%
!! GCCAACTAGGTAAGTATTGG+AGG + chr8.2:142187-142206 None:intergenic 45.0%
!! GCCTAAAGATTCTAAGGCCA+AGG - chr8.2:142416-142435 MS.gene95042:CDS 45.0%
!!! GGTGAGGCACAATTTTTTCG+CGG - chr8.2:142710-142729 MS.gene95042:intron 45.0%
!! TTATTTCATTTATTTAAATT+TGG + chr8.2:141539-141558 None:intergenic 5.0%
!!! AAACTTATTTTAAAATTAAT+TGG - chr8.2:141454-141473 MS.gene95042:intron 5.0%
!!! AATTAATTTTAAAATAAGTT+TGG + chr8.2:141455-141474 None:intergenic 5.0%
!!! ATTAATTTTAAAATAAGTTT+GGG + chr8.2:141454-141473 None:intergenic 5.0%
AACAGAGGTTCCCCCTCAAA+AGG + chr8.2:143634-143653 None:intergenic 50.0%
AAGACAGGAACCTTGCCAAG+AGG + chr8.2:141035-141054 None:intergenic 50.0%
AAGCACTTGGCATCCAACAG+AGG + chr8.2:143649-143668 None:intergenic 50.0%
ACCCAAAAAGGAGGCCAAGA+AGG - chr8.2:142449-142468 MS.gene95042:CDS 50.0%
ACGGACACTGACACATTCCT+CGG - chr8.2:141892-141911 MS.gene95042:intron 50.0%
CGACATGAATCCTCTTGGCA+AGG - chr8.2:141022-141041 MS.gene95042:CDS 50.0%
CTCAAAGACAGGACCATCAG+GGG + chr8.2:141063-141082 None:intergenic 50.0%
CTCGACATGAGGAAACTCTG+AGG + chr8.2:142289-142308 None:intergenic 50.0%
CTCTCAAAGACAGGACCATC+AGG + chr8.2:141065-141084 None:intergenic 50.0%
GATACGGTGTGGCATGGATT+GGG + chr8.2:141432-141451 None:intergenic 50.0%
GGATTCTTGGGTTTGGGCTT+GGG + chr8.2:142513-142532 None:intergenic 50.0%
GTTGGGGAGAGAAGACTTAC+TGG + chr8.2:141356-141375 None:intergenic 50.0%
TCTTGGCAAGGTTCCTGTCT+TGG - chr8.2:141034-141053 MS.gene95042:CDS 50.0%
TGTCCGTATCCGTGCTTCAT+AGG - chr8.2:142012-142031 MS.gene95042:intron 50.0%
TTTGTGATTGTACGCAGGGG+CGG - chr8.2:142669-142688 MS.gene95042:intron 50.0%
! CACCTTCTTGGCCTCCTTTT+TGG + chr8.2:142454-142473 None:intergenic 50.0%
!! AAAATCAGCTTGGGCTGGTG+TGG - chr8.2:143130-143149 MS.gene95042:intron 50.0%
!! AACCAGAGAGAGTACCCTTC+AGG + chr8.2:143319-143338 None:intergenic 50.0%
!! ATCCTGAAGGGTACTCTCTC+TGG - chr8.2:143314-143333 MS.gene95042:CDS 50.0%
!! GTGTCAGATTTGGTGTGTCC+CGG + chr8.2:141919-141938 None:intergenic 50.0%
!! TGGTGGATTTCTTCAGCGGA+TGG - chr8.2:143396-143415 MS.gene95042:intron 50.0%
!! TTTTGAGGGGGAACCTCTGT+TGG - chr8.2:143633-143652 MS.gene95042:CDS 50.0%
!!! CGGTTCTGAGCCACCTTTTA+AGG - chr8.2:143459-143478 MS.gene95042:intron 50.0%
ACTGACACATTCCTCGGACC+GGG - chr8.2:141898-141917 MS.gene95042:intron 55.0%
CACTGACACATTCCTCGGAC+CGG - chr8.2:141897-141916 MS.gene95042:intron 55.0%
CAGCTTCAGCCTGCTTGACT+TGG + chr8.2:142362-142381 None:intergenic 55.0%
CCATCAGGGGTTTCCAAGAC+AGG + chr8.2:141050-141069 None:intergenic 55.0%
CCTGTCTTGGAAACCCCTGA+TGG - chr8.2:141047-141066 MS.gene95042:CDS 55.0%
GGATACGGTGTGGCATGGAT+TGG + chr8.2:141433-141452 None:intergenic 55.0%
GGGATTCTTGGGTTTGGGCT+TGG + chr8.2:142514-142533 None:intergenic 55.0%
GGGGAGAGAAGACTTACTGG+AGG + chr8.2:141353-141372 None:intergenic 55.0%
GGGTAGCCAAAGCTACCCTT+TGG - chr8.2:141772-141791 MS.gene95042:intron 55.0%
! AAGGGGTTGTGGCTTTTCCG+TGG - chr8.2:143484-143503 MS.gene95042:intron 55.0%
! AGGGGTTGTGGCTTTTCCGT+GGG - chr8.2:143485-143504 MS.gene95042:intron 55.0%
! GTTTGGGATACGGTGTGGCA+TGG + chr8.2:141438-141457 None:intergenic 55.0%
!! GGGCTTTTCTGGCACCTTCT+TGG + chr8.2:142466-142485 None:intergenic 55.0%
AATCAGGGGCGGACCTGAAC+AGG + chr8.2:143173-143192 None:intergenic 60.0%
AGTTGGCCACTCTGTCACCC+TGG - chr8.2:142200-142219 MS.gene95042:CDS 60.0%
ATTGTACGCAGGGGCGGATC+TGG - chr8.2:142675-142694 MS.gene95042:intron 60.0%
GACCTGAACAGGTCCTGGTG+TGG + chr8.2:143162-143181 None:intergenic 60.0%
GGGTGACAGAGTGGCCAACT+AGG + chr8.2:142200-142219 None:intergenic 60.0%
TGCCACACCAGGACCTGTTC+AGG - chr8.2:143157-143176 MS.gene95042:intron 60.0%
TGTCAGCCAGGGTGACAGAG+TGG + chr8.2:142209-142228 None:intergenic 60.0%
!! ACGGTGTGGCATGGATTGGG+TGG + chr8.2:141429-141448 None:intergenic 60.0%
!! ATTTGGTGTGTCCCGGTCCG+AGG + chr8.2:141912-141931 None:intergenic 60.0%
GGTGTGGCACTTGCCACACC+AGG - chr8.2:143146-143165 MS.gene95042:intron 65.0%
GGGCGGACCTGAACAGGTCC+TGG + chr8.2:143167-143186 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 140990 143675 140990 ID=MS.gene95042
chr8.2 mRNA 140990 143675 140990 ID=MS.gene95042.t1;Parent=MS.gene95042
chr8.2 exon 143511 143675 143511 ID=MS.gene95042.t1.exon1;Parent=MS.gene95042.t1
chr8.2 CDS 143511 143675 143511 ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1
chr8.2 exon 143310 143411 143310 ID=MS.gene95042.t1.exon2;Parent=MS.gene95042.t1
chr8.2 CDS 143310 143411 143310 ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1
chr8.2 exon 142038 142542 142038 ID=MS.gene95042.t1.exon3;Parent=MS.gene95042.t1
chr8.2 CDS 142038 142542 142038 ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1
chr8.2 exon 140990 141369 140990 ID=MS.gene95042.t1.exon4;Parent=MS.gene95042.t1
chr8.2 CDS 140990 141369 140990 ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1
Gene Sequence

>MS.gene95042

ATGGGTGTTTCTAACAAGACACCTCAATTTCTCGACATGAATCCTCTTGGCAAGGTTCCTGTCTTGGAAACCCCTGATGGTCCTGTCTTTGAGAGCAATGCTATTGCTCGTTATGTTGCTAGACTCAACAACAACACCTTGTATGGTTCTTCTTTGATTCAATATGTAAGTCTTGTTTTCTTCTTTTAATTCTATTCTATTTTTTTTTCTTTCTTTTTTTTATTAATTGCTGTACTCAATTATTGATTCATTCTCTGCATTCAGGCTCACATTGAACAATGGATTGATTTTTCATCCTTGGAGATTGATTCTAATATTAACAAGTGGCTCTATCCAAGATTGGGATATGGGGTTTACCTTCCTCCAGTAAGTCTTCTCTCCCCAACATTTTCCATACACTGAACTCGATTTAGAATCAATAGATGATAAGACATATCCACCCAATCCATGCCACACCGTATCCCAAACTTATTTTAAAATTAATTGGATATTACTCAGATGTGTATGTCAGACAGCGGCGAAGCTAGCTATGTTTCCACAAGGGGGCCAAATTTAAATAAATGAAATAAAATATAATTTAACTAGCTTTCTTTGTATTTGTTTAAGAGATCTGAAGTGTCAAAATAATACAAAATATATCTATTAAACAAGTGAATATATTTTGGTTTTCCTATTTCTACTGATTTTTGACAAATAAACTCTTTTGCGGTAGCTAAATATATATTATTGGGATAGCTAATATCAAAATATACTAACTTAGTCAAAGAAAAAAATATTTGTTGGGGTAGCCAAAGCTACCCTTTGGCAACAAATAGCTTCGCCCCTCATGTCAGAGAATCTTAAGAGTGTCAGATATGCACCGACACATATACTTCACCCAAGTTGGTTTATTTCTATGAAGCACGGACACTGACACATTCCTCGGACCGGGACACACCAAATCTGACACATATACTTTACACTGAATTATATGATTTTCGCACATTGTTAGCGGTGTCAATGTGTCAGTGTCTGTGGACATGTGTCCGTATCCGTGCTTCATAGGTTTATTTACATCTTCAATATTTTTGTTCTTGTTAACATCTTGTTGCTATGATATTTTATCCTGATCTTAATTATTTGTCTGGATGAAGGCTGAAGAGATTGCAATTACTGGCCTGAAGAGAGCTTTGAATGCTTTGAACACTCACCTTGCCTCCAATACTTACCTAGTTGGCCACTCTGTCACCCTGGCTGACATCATAACGACATGCAATTTGTATGTTGGTTTCACTCGTCTCTTTGTCAAGAGCTTCTCCTCAGAGTTTCCTCATGTCGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTCCGCAAGATATTAGGCCAAGTCAAGCAGGCTGAAGCTGTACAACCTCTTCAATCTGTAAAGAAGCCTTCCCAGCCTAAAGATTCTAAGGCCAAGGTAAACGACGAACCCAAAAAGGAGGCCAAGAAGGTGCCAGAAAAGCCCAAAGAAGAAGCAGAAGAAGAGGCACCCAAGCCCAAACCCAAGAATCCCCTTGATCTTCTTCCTCCAAGCAAGATGATACTGGATGACTGGAAAAGACTCTACTCGAACACTAAAAACAACTTCAGAGAGGTTGCTATCAAAGGTATTGTTACTGTGTCCCCCTTTGATGTTATTGTTTTCAATTTTGTGATTGTACGCAGGGGCGGATCTGGACTCAAAATATTGGTGAGGCACAATTTTTTCGCGGTTAAATAATTAAATAAAATATACACATAAGTAGCGAACGTGAGTTAATTGCCGTTTGTAGCGAGTGAATTTTGGATGTAAATGAGCAATTTTAAAAATGAGAAGAGTGATTTTAAATAACATATGCAAATATAAGGCCCAAGCCCATAACAACAAACACACATAACCCTAAATATTTGGTACTCATAGTCACATTTATCACAGCCGCTGCAATACTTTTCTTTTCTGCTTCTTTCTTCTTACAGTTCCATGGTTTCTTCATCTTTTTCCTTTCTTACCATGGTTTCTACATATGATTTCTTCTTCTTTTCTACTGGTACTCTGCTTGTGATTGATGGGTTTACATTAAGTTTATTATCTCAGTTCAATGTTTCATATATGGAGGGAAAAAAATGAAAAAAATCAGCTTGGGCTGGTGTGGCACTTGCCACACCAGGACCTGTTCAGGTCCGCCCCTGATTGTACATTGTGAAATTTGCGGTTCTGGATATTCTCTCAAAGAATGTCAAAGATTTTTATAAGACATACATAGGCAAGATCTTTTTAAATCCTTCTATCTTGCAGGATTTTGGGACATGTATGATCCTGAAGGGTACTCTCTCTGGTTCTGTGATTACAAATACAATGATGAGAACACTGTTTCCTTTGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTAGCCCGCAAGTATGCTTTTGGAAAGATGCTTGTGATCGGTTCTGAGCCACCTTTTAAGGTAAAGGGGTTGTGGCTTTTCCGTGGGCAAGAAATCCCTAAATTTGTGATGGATGAATGCTATGACATGGAGCTGTATGAATGGACAAAGGTCGACATCTCAGATGAAGCTCAAAAGGAGCGTGTCAGTCAGATGATTGAAGATTTTGAACCTTTTGAGGGGGAACCTCTGTTGGATGCCAAGTGCTTCAAGTGA

Protein sequence

>MS.gene95042.t1

MGVSNKTPQFLDMNPLGKVPVLETPDGPVFESNAIARYVARLNNNTLYGSSLIQYAHIEQWIDFSSLEIDSNINKWLYPRLGYGVYLPPAEEIAITGLKRALNALNTHLASNTYLVGHSVTLADIITTCNLYVGFTRLFVKSFSSEFPHVERYFWTLVNQPNFRKILGQVKQAEAVQPLQSVKKPSQPKDSKAKVNDEPKKEAKKVPEKPKEEAEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNTKNNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVMDECYDMELYEWTKVDISDEAQKERVSQMIEDFEPFEGEPLLDAKCFK