Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95042.t1 | KEH32761.1 | 97.9 | 384 | 7 | 1 | 1 | 383 | 1 | 384 | 6.60E-198 | 699.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95042.t1 | Q9FUM1 | 82.4 | 387 | 64 | 2 | 1 | 383 | 36 | 422 | 4.6e-168 | 592.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95042.t1 | A0A072UTU2 | 97.9 | 384 | 7 | 1 | 1 | 383 | 1 | 384 | 4.7e-198 | 699.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene95042 | MS.gene04200 | PPI |
MS.gene94948 | MS.gene95042 | PPI |
MS.gene95042 | MS.gene023009 | PPI |
MS.gene95042 | MS.gene43488 | PPI |
MS.gene95042 | MS.gene027317 | PPI |
MS.gene95042 | MS.gene042040 | PPI |
MS.gene95042 | MS.gene04296 | PPI |
MS.gene95042 | MS.gene84450 | PPI |
MS.gene047236 | MS.gene95042 | PPI |
MS.gene95042 | MS.gene00585 | PPI |
MS.gene95042 | MS.gene051739 | PPI |
MS.gene95042 | MS.gene072093 | PPI |
MS.gene95042 | MS.gene012799 | PPI |
MS.gene95042 | MS.gene002011 | PPI |
MS.gene042040 | MS.gene95042 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95042.t1 | MTR_4g134770 | 98.438 | 384 | 5 | 1 | 1 | 383 | 36 | 419 | 0.0 | 781 |
MS.gene95042.t1 | MTR_4g134770 | 98.438 | 384 | 5 | 1 | 1 | 383 | 1 | 384 | 0.0 | 778 |
MS.gene95042.t1 | MTR_3g058940 | 83.333 | 384 | 63 | 1 | 1 | 383 | 36 | 419 | 0.0 | 670 |
MS.gene95042.t1 | MTR_2g005570 | 84.595 | 383 | 57 | 1 | 1 | 383 | 38 | 418 | 0.0 | 655 |
MS.gene95042.t1 | MTR_2g005570 | 84.334 | 383 | 58 | 1 | 1 | 383 | 38 | 418 | 0.0 | 654 |
MS.gene95042.t1 | MTR_3g064700 | 33.333 | 132 | 73 | 4 | 5 | 125 | 40 | 167 | 5.48e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95042.t1 | AT1G09640 | 77.604 | 384 | 80 | 3 | 1 | 383 | 36 | 414 | 0.0 | 600 |
MS.gene95042.t1 | AT1G57720 | 77.604 | 384 | 79 | 4 | 1 | 383 | 36 | 413 | 0.0 | 585 |
MS.gene95042.t1 | AT1G57720 | 77.604 | 384 | 79 | 4 | 1 | 383 | 36 | 413 | 0.0 | 585 |
MS.gene95042.t1 | AT1G09640 | 72.781 | 169 | 45 | 1 | 1 | 168 | 36 | 204 | 1.52e-84 | 258 |
MS.gene95042.t1 | AT1G09640 | 84.932 | 73 | 10 | 1 | 312 | 383 | 193 | 265 | 3.90e-35 | 130 |
MS.gene95042.t1 | AT2G30870 | 31.387 | 137 | 77 | 4 | 1 | 125 | 35 | 166 | 1.61e-12 | 66.6 |
Find 96 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCTATCTTGCAGGATTT+TGG | 0.085089 | 8.2:-141362 | MS.gene95042:intron |
CTCTTCTTCTGCTTCTTCTT+TGG | 0.092984 | 8.2:+142159 | None:intergenic |
CATTCATCCATCACAAATTT+AGG | 0.098053 | 8.2:+141126 | None:intergenic |
CACAACCCCTTTACCTTAAA+AGG | 0.198539 | 8.2:+141171 | None:intergenic |
GGGATTCTTGGGTTTGGGCT+TGG | 0.216459 | 8.2:+142132 | None:intergenic |
TCTTCTTCTGCTTCTTCTTT+GGG | 0.226224 | 8.2:+142160 | None:intergenic |
GGATTCTTGGGTTTGGGCTT+GGG | 0.239221 | 8.2:+142133 | None:intergenic |
CCAAACTTCCGCAAGATATT+AGG | 0.289841 | 8.2:-142307 | MS.gene95042:CDS |
TTAGCCCGCAAGTATGCTTT+TGG | 0.302747 | 8.2:-141222 | MS.gene95042:CDS |
ATTCATCCATCACAAATTTA+GGG | 0.306943 | 8.2:+141127 | None:intergenic |
CCTAATATCTTGCGGAAGTT+TGG | 0.312009 | 8.2:+142307 | None:intergenic |
AAGAAGATCAAGGGGATTCT+TGG | 0.325325 | 8.2:+142120 | None:intergenic |
ATCAAGGGGATTCTTGGGTT+TGG | 0.332225 | 8.2:+142126 | None:intergenic |
CTCTATCCAAGATTGGGATA+TGG | 0.336268 | 8.2:-143326 | MS.gene95042:CDS |
GGTAAACGACGAACCCAAAA+AGG | 0.338365 | 8.2:-142206 | MS.gene95042:CDS |
TCAAGGGGATTCTTGGGTTT+GGG | 0.341781 | 8.2:+142127 | None:intergenic |
TTCCCAGCCTAAAGATTCTA+AGG | 0.359278 | 8.2:-142233 | MS.gene95042:CDS |
GCTGAAGAGATTGCAATTAC+TGG | 0.361731 | 8.2:-142520 | MS.gene95042:CDS |
ATCCTGAAGGGTACTCTCTC+TGG | 0.365424 | 8.2:-141329 | MS.gene95042:CDS |
CTCTCAAAGACAGGACCATC+AGG | 0.372688 | 8.2:+143581 | None:intergenic |
TCTATCCAAGATTGGGATAT+GGG | 0.385860 | 8.2:-143325 | MS.gene95042:CDS |
AAGCATTCAAAGCTCTCTTC+AGG | 0.386435 | 8.2:+142497 | None:intergenic |
CTTTCCAAAAGCATACTTGC+GGG | 0.392465 | 8.2:+141218 | None:intergenic |
TCCTCCAAGCAAGATGATAC+TGG | 0.393435 | 8.2:-142098 | MS.gene95042:CDS |
TCTTGGCAAGGTTCCTGTCT+TGG | 0.398617 | 8.2:-143609 | MS.gene95042:CDS |
CTCAACAACAACACCTTGTA+TGG | 0.403217 | 8.2:-143530 | MS.gene95042:CDS |
CTCATGTCGAGAGATACTTT+TGG | 0.403977 | 8.2:-142345 | MS.gene95042:CDS |
CAGCTTCAGCCTGCTTGACT+TGG | 0.404975 | 8.2:+142284 | None:intergenic |
TAAACCCCATATCCCAATCT+TGG | 0.413330 | 8.2:+143320 | None:intergenic |
AGAAGATCAAGGGGATTCTT+GGG | 0.421200 | 8.2:+142121 | None:intergenic |
CAAGTGGCTCTATCCAAGAT+TGG | 0.421551 | 8.2:-143333 | MS.gene95042:CDS |
AACCAGAGAGAGTACCCTTC+AGG | 0.429409 | 8.2:+141327 | None:intergenic |
CATCTCAGATGAAGCTCAAA+AGG | 0.452428 | 8.2:-141067 | MS.gene95042:CDS |
TGGCCTTAGAATCTTTAGGC+TGG | 0.476785 | 8.2:+142230 | None:intergenic |
CAAAGAAGAAGCAGAAGAAG+AGG | 0.479600 | 8.2:-142158 | MS.gene95042:CDS |
GCCTCCAATACTTACCTAGT+TGG | 0.484176 | 8.2:-142460 | MS.gene95042:CDS |
AAGTGGCTCTATCCAAGATT+GGG | 0.485075 | 8.2:-143332 | MS.gene95042:CDS |
TTTGGGTTCGTCGTTTACCT+TGG | 0.489504 | 8.2:+142210 | None:intergenic |
CCATCAGGGGTTTCCAAGAC+AGG | 0.490090 | 8.2:+143596 | None:intergenic |
ACGACATGCAATTTGTATGT+TGG | 0.496799 | 8.2:-142409 | MS.gene95042:CDS |
TGGTGGATTTCTTCAGCGGA+TGG | 0.498176 | 8.2:-141247 | MS.gene95042:CDS |
GCAAGATGATACTGGATGAC+TGG | 0.502140 | 8.2:-142090 | MS.gene95042:CDS |
TTAGAATCTTTAGGCTGGGA+AGG | 0.503743 | 8.2:+142235 | None:intergenic |
ACCTTGGCCTTAGAATCTTT+AGG | 0.503994 | 8.2:+142226 | None:intergenic |
TCCAGTATCATCTTGCTTGG+AGG | 0.510179 | 8.2:+142097 | None:intergenic |
TCATCCAGTATCATCTTGCT+TGG | 0.513427 | 8.2:+142094 | None:intergenic |
TTTCTCGACATGAATCCTCT+TGG | 0.518699 | 8.2:-143626 | MS.gene95042:CDS |
ATAGCATTGCTCTCAAAGAC+AGG | 0.521702 | 8.2:+143572 | None:intergenic |
GCCTAAAGATTCTAAGGCCA+AGG | 0.527634 | 8.2:-142227 | MS.gene95042:CDS |
GTGGCCAACTAGGTAAGTAT+TGG | 0.528399 | 8.2:+142456 | None:intergenic |
TTCAGAGAGGTTGCTATCAA+AGG | 0.531471 | 8.2:-142037 | MS.gene95042:intron |
GATATTAGGCCAAGTCAAGC+AGG | 0.533721 | 8.2:-142293 | MS.gene95042:CDS |
GCCAACTAGGTAAGTATTGG+AGG | 0.535307 | 8.2:+142459 | None:intergenic |
CCTGTCTTGGAAACCCCTGA+TGG | 0.535349 | 8.2:-143596 | MS.gene95042:CDS |
GGATTCATGTCGAGAAATTG+AGG | 0.540187 | 8.2:+143632 | None:intergenic |
GGCCTTAGAATCTTTAGGCT+GGG | 0.546742 | 8.2:+142231 | None:intergenic |
AGAAATCCCTAAATTTGTGA+TGG | 0.546910 | 8.2:-141133 | MS.gene95042:CDS |
ATGTCGTTATGATGTCAGCC+AGG | 0.547555 | 8.2:+142425 | None:intergenic |
GGGTGACAGAGTGGCCAACT+AGG | 0.557957 | 8.2:+142446 | None:intergenic |
CGACATGAATCCTCTTGGCA+AGG | 0.562703 | 8.2:-143621 | MS.gene95042:CDS |
ATGACATGGAGCTGTATGAA+TGG | 0.563205 | 8.2:-141101 | MS.gene95042:CDS |
CTAGGTAAGTATTGGAGGCA+AGG | 0.570319 | 8.2:+142464 | None:intergenic |
TTTGGAAAGATGCTTGTGAT+CGG | 0.574318 | 8.2:-141204 | MS.gene95042:CDS |
TGCTTGGAGGAAGAAGATCA+AGG | 0.574810 | 8.2:+142110 | None:intergenic |
GCTTGGAGGAAGAAGATCAA+GGG | 0.576087 | 8.2:+142111 | None:intergenic |
ATTTAGGGATTTCTTGCCCA+CGG | 0.579224 | 8.2:+141142 | None:intergenic |
TGGGACATGTATGATCCTGA+AGG | 0.580791 | 8.2:-141342 | MS.gene95042:CDS |
GTGACATTGAACAAGGTTGG+TGG | 0.584238 | 8.2:-141264 | MS.gene95042:CDS |
TTTGTGACATTGAACAAGGT+TGG | 0.585414 | 8.2:-141267 | MS.gene95042:CDS |
AGGTTGGTGGATTTCTTCAG+CGG | 0.591058 | 8.2:-141251 | MS.gene95042:CDS |
TGACTTGGCCTAATATCTTG+CGG | 0.591227 | 8.2:+142299 | None:intergenic |
GGCTTCTTTACAGATTGAAG+AGG | 0.591543 | 8.2:+142256 | None:intergenic |
TCTTTCCAAAAGCATACTTG+CGG | 0.593669 | 8.2:+141217 | None:intergenic |
TTGATTCTAATATTAACAAG+TGG | 0.595616 | 8.2:-143349 | MS.gene95042:CDS |
GAAGTTTGGCTGATTGACCA+AGG | 0.597999 | 8.2:+142321 | None:intergenic |
AGTTGGCCACTCTGTCACCC+TGG | 0.598292 | 8.2:-142443 | MS.gene95042:CDS |
TTCAGGCTCACATTGAACAA+TGG | 0.606079 | 8.2:-143394 | MS.gene95042:intron |
CTATCCAAGATTGGGATATG+GGG | 0.607195 | 8.2:-143324 | MS.gene95042:CDS |
AGAGAAGACTTACTGGAGGA+AGG | 0.607826 | 8.2:+143297 | None:intergenic |
GGGACATGTATGATCCTGAA+GGG | 0.608052 | 8.2:-141341 | MS.gene95042:CDS |
AATATTAGAATCAATCTCCA+AGG | 0.612021 | 8.2:+143358 | None:intergenic |
CAAAAGTATCTCTCGACATG+AGG | 0.612573 | 8.2:+142346 | None:intergenic |
AATCAAAGAAGAACCATACA+AGG | 0.618859 | 8.2:+143517 | None:intergenic |
TCTCAAAGACAGGACCATCA+GGG | 0.621025 | 8.2:+143582 | None:intergenic |
CTTGGAGGAAGAAGATCAAG+GGG | 0.623330 | 8.2:+142112 | None:intergenic |
CTCAAAGACAGGACCATCAG+GGG | 0.627628 | 8.2:+143583 | None:intergenic |
TTCCTTTGTGACATTGAACA+AGG | 0.627797 | 8.2:-141271 | MS.gene95042:CDS |
AACCCCTTTACCTTAAAAGG+TGG | 0.642602 | 8.2:+141174 | None:intergenic |
AAGCACTTGGCATCCAACAG+AGG | 0.653957 | 8.2:+140997 | None:intergenic |
AAGACAGGAACCTTGCCAAG+AGG | 0.659474 | 8.2:+143611 | None:intergenic |
TGTCAGCCAGGGTGACAGAG+TGG | 0.662886 | 8.2:+142437 | None:intergenic |
AACCTTGTTCAATGTCACAA+AGG | 0.664832 | 8.2:+141269 | None:intergenic |
CTCGACATGAGGAAACTCTG+AGG | 0.687154 | 8.2:+142357 | None:intergenic |
TGTCGTTATGATGTCAGCCA+GGG | 0.694507 | 8.2:+142426 | None:intergenic |
GGAGCTGTATGAATGGACAA+AGG | 0.712876 | 8.2:-141094 | MS.gene95042:CDS |
GATGGATGAATGCTATGACA+TGG | 0.718496 | 8.2:-141115 | MS.gene95042:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAACATATGCAAATATA+AGG | - | chr8.2:142846-142865 | MS.gene95042:intron | 15.0% |
!! | CAAAGAAAAAAATATTTGTT+GGG | - | chr8.2:141751-141770 | MS.gene95042:intron | 15.0% |
!! | GTAGCTAAATATATATTATT+GGG | - | chr8.2:141698-141717 | MS.gene95042:intron | 15.0% |
!! | TCAAAGAAAAAAATATTTGT+TGG | - | chr8.2:141750-141769 | MS.gene95042:intron | 15.0% |
!!! | AAAGAAAAAAATATTTGTTG+GGG | - | chr8.2:141752-141771 | MS.gene95042:intron | 15.0% |
!!! | TTAAACAAGTGAATATATTT+TGG | - | chr8.2:141632-141651 | MS.gene95042:intron | 15.0% |
!! | AAAAATGAAAAAAATCAGCT+TGG | - | chr8.2:143120-143139 | MS.gene95042:intron | 20.0% |
!! | AAAATGAAAAAAATCAGCTT+GGG | - | chr8.2:143121-143140 | MS.gene95042:intron | 20.0% |
!! | ATTGAAAACAATAACATCAA+AGG | + | chr8.2:142649-142668 | None:intergenic | 20.0% |
!! | GGTAGCTAAATATATATTAT+TGG | - | chr8.2:141697-141716 | MS.gene95042:intron | 20.0% |
!! | TTGAAAACAATAACATCAAA+GGG | + | chr8.2:142648-142667 | None:intergenic | 20.0% |
!! | TTGATTCTAATATTAACAAG+TGG | - | chr8.2:141294-141313 | MS.gene95042:CDS | 20.0% |
!!! | GATTTTTATAAGACATACAT+AGG | - | chr8.2:143242-143261 | MS.gene95042:intron | 20.0% |
!!! | TTTAAAATAAGTTTGGGATA+CGG | + | chr8.2:141448-141467 | None:intergenic | 20.0% |
! | AAATTTCACAATGTACAATC+AGG | + | chr8.2:143189-143208 | None:intergenic | 25.0% |
! | AATATTAGAATCAATCTCCA+AGG | + | chr8.2:141288-141307 | None:intergenic | 25.0% |
! | AATTTCACAATGTACAATCA+GGG | + | chr8.2:143188-143207 | None:intergenic | 25.0% |
! | ACTATGAGTACCAAATATTT+AGG | + | chr8.2:142902-142921 | None:intergenic | 25.0% |
! | ATTCATCCATCACAAATTTA+GGG | + | chr8.2:143519-143538 | None:intergenic | 25.0% |
! | ATTGTACATTGTGAAATTTG+CGG | - | chr8.2:143190-143209 | MS.gene95042:intron | 25.0% |
! | CTATGAGTACCAAATATTTA+GGG | + | chr8.2:142901-142920 | None:intergenic | 25.0% |
! | TAAAGTATATGTGTCAGATT+TGG | + | chr8.2:141929-141948 | None:intergenic | 25.0% |
! | TCAGTTCAATGTTTCATATA+TGG | - | chr8.2:143091-143110 | MS.gene95042:intron | 25.0% |
! | TCATAGAAATAAACCAACTT+GGG | + | chr8.2:141869-141888 | None:intergenic | 25.0% |
! | TGAAAACAATAACATCAAAG+GGG | + | chr8.2:142647-142666 | None:intergenic | 25.0% |
! | TGTCAAAAATCAGTAGAAAT+AGG | + | chr8.2:141662-141681 | None:intergenic | 25.0% |
! | TTAATTATTTGTCTGGATGA+AGG | - | chr8.2:142101-142120 | MS.gene95042:CDS | 25.0% |
! | TTCAATGTTTCATATATGGA+GGG | - | chr8.2:143095-143114 | MS.gene95042:intron | 25.0% |
! | TTCATAGAAATAAACCAACT+TGG | + | chr8.2:141870-141889 | None:intergenic | 25.0% |
!! | TTGACAAATAAACTCTTTTG+CGG | - | chr8.2:141676-141695 | MS.gene95042:intron | 25.0% |
!!! | TTATGTGTGTTTGTTGTTAT+GGG | + | chr8.2:142878-142897 | None:intergenic | 25.0% |
AATCAAAGAAGAACCATACA+AGG | + | chr8.2:141129-141148 | None:intergenic | 30.0% | |
AGAAATCCCTAAATTTGTGA+TGG | - | chr8.2:143510-143529 | MS.gene95042:intron | 30.0% | |
ATTTCACAATGTACAATCAG+GGG | + | chr8.2:143187-143206 | None:intergenic | 30.0% | |
CACACATAACCCTAAATATT+TGG | - | chr8.2:142889-142908 | MS.gene95042:intron | 30.0% | |
CATTCATCCATCACAAATTT+AGG | + | chr8.2:143520-143539 | None:intergenic | 30.0% | |
CCAGACAAATAATTAAGATC+AGG | + | chr8.2:142097-142116 | None:intergenic | 30.0% | |
CCTGATCTTAATTATTTGTC+TGG | - | chr8.2:142094-142113 | MS.gene95042:CDS | 30.0% | |
GAAAACAATAACATCAAAGG+GGG | + | chr8.2:142646-142665 | None:intergenic | 30.0% | |
GAAATCATATGTAGAAACCA+TGG | + | chr8.2:143012-143031 | None:intergenic | 30.0% | |
GTAAATAAACCTATGAAGCA+CGG | + | chr8.2:142024-142043 | None:intergenic | 30.0% | |
GTTCAATGTTTCATATATGG+AGG | - | chr8.2:143094-143113 | MS.gene95042:intron | 30.0% | |
TTCAGTGTATGGAAAATGTT+GGG | + | chr8.2:141373-141392 | None:intergenic | 30.0% | |
TTTAAATCCTTCTATCTTGC+AGG | - | chr8.2:143274-143293 | MS.gene95042:intron | 30.0% | |
! | AAGATTTTGAACCTTTTGAG+GGG | - | chr8.2:143620-143639 | MS.gene95042:CDS | 30.0% |
! | ATCTTTTTCCTTTCTTACCA+TGG | - | chr8.2:142992-143011 | MS.gene95042:intron | 30.0% |
! | GAAGATTTTGAACCTTTTGA+GGG | - | chr8.2:143619-143638 | MS.gene95042:CDS | 30.0% |
! | GATTTCTTCTTCTTTTCTAC+TGG | - | chr8.2:143026-143045 | MS.gene95042:intron | 30.0% |
! | TGAAGATTTTGAACCTTTTG+AGG | - | chr8.2:143618-143637 | MS.gene95042:CDS | 30.0% |
!! | AGAAAAGAAAAGTATTGCAG+CGG | + | chr8.2:142939-142958 | None:intergenic | 30.0% |
!! | ATGGATTGATTTTTCATCCT+TGG | - | chr8.2:141268-141287 | MS.gene95042:CDS | 30.0% |
!! | GTTATGTGTGTTTGTTGTTA+TGG | + | chr8.2:142879-142898 | None:intergenic | 30.0% |
!! | TGGTTTATTTCTATGAAGCA+CGG | - | chr8.2:141873-141892 | MS.gene95042:intron | 30.0% |
AACCTTGTTCAATGTCACAA+AGG | + | chr8.2:143377-143396 | None:intergenic | 35.0% | |
ACGACATGCAATTTGTATGT+TGG | - | chr8.2:142234-142253 | MS.gene95042:CDS | 35.0% | |
CAAAATTCACTCGCTACAAA+CGG | + | chr8.2:142786-142805 | None:intergenic | 35.0% | |
CACTAAAAACAACTTCAGAG+AGG | - | chr8.2:142593-142612 | MS.gene95042:intron | 35.0% | |
CTTAAGATTCTCTGACATGA+GGG | + | chr8.2:141814-141833 | None:intergenic | 35.0% | |
GGAAAAAGATGAAGAAACCA+TGG | + | chr8.2:142982-143001 | None:intergenic | 35.0% | |
GTTCAGTGTATGGAAAATGT+TGG | + | chr8.2:141374-141393 | None:intergenic | 35.0% | |
TCAGTGTATGGAAAATGTTG+GGG | + | chr8.2:141372-141391 | None:intergenic | 35.0% | |
TCTAAATCGAGTTCAGTGTA+TGG | + | chr8.2:141384-141403 | None:intergenic | 35.0% | |
TCTATCCAAGATTGGGATAT+GGG | - | chr8.2:141318-141337 | MS.gene95042:CDS | 35.0% | |
TCTTAAGATTCTCTGACATG+AGG | + | chr8.2:141815-141834 | None:intergenic | 35.0% | |
TCTTCTTCTGCTTCTTCTTT+GGG | + | chr8.2:142486-142505 | None:intergenic | 35.0% | |
TCTTTCTTCTTACAGTTCCA+TGG | - | chr8.2:142962-142981 | MS.gene95042:intron | 35.0% | |
TGTAGAAACCATGGTAAGAA+AGG | + | chr8.2:143003-143022 | None:intergenic | 35.0% | |
TTAAGATTCTCTGACATGAG+GGG | + | chr8.2:141813-141832 | None:intergenic | 35.0% | |
TTCCTTTGTGACATTGAACA+AGG | - | chr8.2:143372-143391 | MS.gene95042:CDS | 35.0% | |
TTGATTCATTCTCTGCATTC+AGG | - | chr8.2:141232-141251 | MS.gene95042:CDS | 35.0% | |
TTTGGAAAGATGCTTGTGAT+CGG | - | chr8.2:143439-143458 | MS.gene95042:intron | 35.0% | |
TTTGTGACATTGAACAAGGT+TGG | - | chr8.2:143376-143395 | MS.gene95042:CDS | 35.0% | |
! | AATTTTGTGATTGTACGCAG+GGG | - | chr8.2:142666-142685 | MS.gene95042:intron | 35.0% |
! | CAATTTTGTGATTGTACGCA+GGG | - | chr8.2:142665-142684 | MS.gene95042:intron | 35.0% |
! | CTTCTATCTTGCAGGATTTT+GGG | - | chr8.2:143282-143301 | MS.gene95042:intron | 35.0% |
! | TCAATTTTGTGATTGTACGC+AGG | - | chr8.2:142664-142683 | MS.gene95042:intron | 35.0% |
! | TCTTTCCAAAAGCATACTTG+CGG | + | chr8.2:143429-143448 | None:intergenic | 35.0% |
! | TGATTTTCGCACATTGTTAG+CGG | - | chr8.2:141961-141980 | MS.gene95042:intron | 35.0% |
!! | AGATTTTGAACCTTTTGAGG+GGG | - | chr8.2:143621-143640 | MS.gene95042:CDS | 35.0% |
AAACCTATGAAGCACGGATA+CGG | + | chr8.2:142018-142037 | None:intergenic | 40.0% | |
AACCCCTTTACCTTAAAAGG+TGG | + | chr8.2:143472-143491 | None:intergenic | 40.0% | |
AAGAAGATCAAGGGGATTCT+TGG | + | chr8.2:142526-142545 | None:intergenic | 40.0% | |
AAGCATTCAAAGCTCTCTTC+AGG | + | chr8.2:142149-142168 | None:intergenic | 40.0% | |
AAGCTAGCTATGTTTCCACA+AGG | - | chr8.2:141510-141529 | MS.gene95042:intron | 40.0% | |
AGAAGATCAAGGGGATTCTT+GGG | + | chr8.2:142525-142544 | None:intergenic | 40.0% | |
AGCTAGCTATGTTTCCACAA+GGG | - | chr8.2:141511-141530 | MS.gene95042:intron | 40.0% | |
ATAGCATTGCTCTCAAAGAC+AGG | + | chr8.2:141074-141093 | None:intergenic | 40.0% | |
ATGACATGGAGCTGTATGAA+TGG | - | chr8.2:143542-143561 | MS.gene95042:CDS | 40.0% | |
ATTTAAATTTGGCCCCCTTG+TGG | + | chr8.2:141528-141547 | None:intergenic | 40.0% | |
ATTTAGGGATTTCTTGCCCA+CGG | + | chr8.2:143504-143523 | None:intergenic | 40.0% | |
CAAAGAAGAAGCAGAAGAAG+AGG | - | chr8.2:142485-142504 | MS.gene95042:CDS | 40.0% | |
CACAACCCCTTTACCTTAAA+AGG | + | chr8.2:143475-143494 | None:intergenic | 40.0% | |
CACATATACTTCACCCAAGT+TGG | - | chr8.2:141853-141872 | MS.gene95042:intron | 40.0% | |
CATCTCAGATGAAGCTCAAA+AGG | - | chr8.2:143576-143595 | MS.gene95042:CDS | 40.0% | |
CATTGTGAAATTTGCGGTTC+TGG | - | chr8.2:143196-143215 | MS.gene95042:intron | 40.0% | |
CCAAAATCCTGCAAGATAGA+AGG | + | chr8.2:143284-143303 | None:intergenic | 40.0% | |
CCAAACTTCCGCAAGATATT+AGG | - | chr8.2:142336-142355 | MS.gene95042:CDS | 40.0% | |
CCTAATATCTTGCGGAAGTT+TGG | + | chr8.2:142339-142358 | None:intergenic | 40.0% | |
CGGATCTGGACTCAAAATAT+TGG | - | chr8.2:142689-142708 | MS.gene95042:intron | 40.0% | |
CTATCCAAGATTGGGATATG+GGG | - | chr8.2:141319-141338 | MS.gene95042:CDS | 40.0% | |
CTCAACAACAACACCTTGTA+TGG | - | chr8.2:141113-141132 | MS.gene95042:CDS | 40.0% | |
CTCTATCCAAGATTGGGATA+TGG | - | chr8.2:141317-141336 | MS.gene95042:CDS | 40.0% | |
CTCTTCTTCTGCTTCTTCTT+TGG | + | chr8.2:142487-142506 | None:intergenic | 40.0% | |
CTGGACTCAAAATATTGGTG+AGG | - | chr8.2:142694-142713 | MS.gene95042:intron | 40.0% | |
CTTGGGTGAAGTATATGTGT+CGG | + | chr8.2:141852-141871 | None:intergenic | 40.0% | |
GATGGATGAATGCTATGACA+TGG | - | chr8.2:143528-143547 | MS.gene95042:CDS | 40.0% | |
GCTGAAGAGATTGCAATTAC+TGG | - | chr8.2:142123-142142 | MS.gene95042:CDS | 40.0% | |
GGATTCATGTCGAGAAATTG+AGG | + | chr8.2:141014-141033 | None:intergenic | 40.0% | |
GGCTTCTTTACAGATTGAAG+AGG | + | chr8.2:142390-142409 | None:intergenic | 40.0% | |
GTACTCTGCTTGTGATTGAT+GGG | - | chr8.2:143048-143067 | MS.gene95042:intron | 40.0% | |
TAAACCCCATATCCCAATCT+TGG | + | chr8.2:141326-141345 | None:intergenic | 40.0% | |
TCATCCAGTATCATCTTGCT+TGG | + | chr8.2:142552-142571 | None:intergenic | 40.0% | |
TGAAAAAAATCAGCTTGGGC+TGG | - | chr8.2:143125-143144 | MS.gene95042:intron | 40.0% | |
TTAGAATCTTTAGGCTGGGA+AGG | + | chr8.2:142411-142430 | None:intergenic | 40.0% | |
TTCAGAGAGGTTGCTATCAA+AGG | - | chr8.2:142606-142625 | MS.gene95042:intron | 40.0% | |
TTCAGGCTCACATTGAACAA+TGG | - | chr8.2:141249-141268 | MS.gene95042:CDS | 40.0% | |
TTCCCAGCCTAAAGATTCTA+AGG | - | chr8.2:142410-142429 | MS.gene95042:CDS | 40.0% | |
TTTCTCGACATGAATCCTCT+TGG | - | chr8.2:141017-141036 | MS.gene95042:CDS | 40.0% | |
! | AAGTGGCTCTATCCAAGATT+GGG | - | chr8.2:141311-141330 | MS.gene95042:CDS | 40.0% |
! | AATAAGTTTGGGATACGGTG+TGG | + | chr8.2:141443-141462 | None:intergenic | 40.0% |
! | CCTTCTATCTTGCAGGATTT+TGG | - | chr8.2:143281-143300 | MS.gene95042:intron | 40.0% |
! | CGAAGCTATTTGTTGCCAAA+GGG | + | chr8.2:141790-141809 | None:intergenic | 40.0% |
! | CGTTTGTAGCGAGTGAATTT+TGG | - | chr8.2:142784-142803 | MS.gene95042:intron | 40.0% |
! | CTCATGTCGAGAGATACTTT+TGG | - | chr8.2:142298-142317 | MS.gene95042:CDS | 40.0% |
! | CTTTCCAAAAGCATACTTGC+GGG | + | chr8.2:143428-143447 | None:intergenic | 40.0% |
! | TGACTTGGCCTAATATCTTG+CGG | + | chr8.2:142347-142366 | None:intergenic | 40.0% |
!! | ACCTTGGCCTTAGAATCTTT+AGG | + | chr8.2:142420-142439 | None:intergenic | 40.0% |
!! | CAAAAGTATCTCTCGACATG+AGG | + | chr8.2:142300-142319 | None:intergenic | 40.0% |
!! | GTGTTTGTTGTTATGGGCTT+GGG | + | chr8.2:142872-142891 | None:intergenic | 40.0% |
!! | TGTGTTTGTTGTTATGGGCT+TGG | + | chr8.2:142873-142892 | None:intergenic | 40.0% |
!!! | AGCCACCTTTTAAGGTAAAG+GGG | - | chr8.2:143467-143486 | MS.gene95042:intron | 40.0% |
!!! | CTTTTAAGGTAAAGGGGTTG+TGG | - | chr8.2:143473-143492 | MS.gene95042:intron | 40.0% |
!!! | GAGCCACCTTTTAAGGTAAA+GGG | - | chr8.2:143466-143485 | MS.gene95042:intron | 40.0% |
!!! | TGAGCCACCTTTTAAGGTAA+AGG | - | chr8.2:143465-143484 | MS.gene95042:intron | 40.0% |
AAACGACGAACCCAAAAAGG+AGG | - | chr8.2:142440-142459 | MS.gene95042:CDS | 45.0% | |
AGAGAAGACTTACTGGAGGA+AGG | + | chr8.2:141349-141368 | None:intergenic | 45.0% | |
ATCAAGGGGATTCTTGGGTT+TGG | + | chr8.2:142520-142539 | None:intergenic | 45.0% | |
ATGTCGTTATGATGTCAGCC+AGG | + | chr8.2:142221-142240 | None:intergenic | 45.0% | |
CAGATGTGTATGTCAGACAG+CGG | - | chr8.2:141485-141504 | MS.gene95042:intron | 45.0% | |
CTAGCTATGTTTCCACAAGG+GGG | - | chr8.2:141513-141532 | MS.gene95042:intron | 45.0% | |
CTTGGAGGAAGAAGATCAAG+GGG | + | chr8.2:142534-142553 | None:intergenic | 45.0% | |
GAAGTTTGGCTGATTGACCA+AGG | + | chr8.2:142325-142344 | None:intergenic | 45.0% | |
GATATTAGGCCAAGTCAAGC+AGG | - | chr8.2:142350-142369 | MS.gene95042:CDS | 45.0% | |
GCAAGATGATACTGGATGAC+TGG | - | chr8.2:142553-142572 | MS.gene95042:intron | 45.0% | |
GCCTCCAATACTTACCTAGT+TGG | - | chr8.2:142183-142202 | MS.gene95042:CDS | 45.0% | |
GCTAGCTATGTTTCCACAAG+GGG | - | chr8.2:141512-141531 | MS.gene95042:intron | 45.0% | |
GCTTGGAGGAAGAAGATCAA+GGG | + | chr8.2:142535-142554 | None:intergenic | 45.0% | |
GGAGCTGTATGAATGGACAA+AGG | - | chr8.2:143549-143568 | MS.gene95042:CDS | 45.0% | |
GGCCTTAGAATCTTTAGGCT+GGG | + | chr8.2:142415-142434 | None:intergenic | 45.0% | |
GGGACATGTATGATCCTGAA+GGG | - | chr8.2:143302-143321 | MS.gene95042:intron | 45.0% | |
GGTAAACGACGAACCCAAAA+AGG | - | chr8.2:142437-142456 | MS.gene95042:CDS | 45.0% | |
GGTACTCTGCTTGTGATTGA+TGG | - | chr8.2:143047-143066 | MS.gene95042:intron | 45.0% | |
GTGACATTGAACAAGGTTGG+TGG | - | chr8.2:143379-143398 | MS.gene95042:CDS | 45.0% | |
GTGGCCAACTAGGTAAGTAT+TGG | + | chr8.2:142190-142209 | None:intergenic | 45.0% | |
TCAAGGGGATTCTTGGGTTT+GGG | + | chr8.2:142519-142538 | None:intergenic | 45.0% | |
TCACAATGTACAATCAGGGG+CGG | + | chr8.2:143184-143203 | None:intergenic | 45.0% | |
TCCAGTATCATCTTGCTTGG+AGG | + | chr8.2:142549-142568 | None:intergenic | 45.0% | |
TCCTCCAAGCAAGATGATAC+TGG | - | chr8.2:142545-142564 | MS.gene95042:intron | 45.0% | |
TCTCAAAGACAGGACCATCA+GGG | + | chr8.2:141064-141083 | None:intergenic | 45.0% | |
TGCTTGGAGGAAGAAGATCA+AGG | + | chr8.2:142536-142555 | None:intergenic | 45.0% | |
TGGGACATGTATGATCCTGA+AGG | - | chr8.2:143301-143320 | MS.gene95042:intron | 45.0% | |
TGTCAATGTGTCAGTGTCTG+TGG | - | chr8.2:141984-142003 | MS.gene95042:intron | 45.0% | |
TGTCGTTATGATGTCAGCCA+GGG | + | chr8.2:142220-142239 | None:intergenic | 45.0% | |
TTGTTGCCAAAGGGTAGCTT+TGG | + | chr8.2:141781-141800 | None:intergenic | 45.0% | |
! | ACCTTCTTGGCCTCCTTTTT+GGG | + | chr8.2:142453-142472 | None:intergenic | 45.0% |
! | CAAGTGGCTCTATCCAAGAT+TGG | - | chr8.2:141310-141329 | MS.gene95042:CDS | 45.0% |
! | CGAGAGATACTTTTGGACCT+TGG | - | chr8.2:142305-142324 | MS.gene95042:CDS | 45.0% |
! | GCGAAGCTATTTGTTGCCAA+AGG | + | chr8.2:141791-141810 | None:intergenic | 45.0% |
! | GCTTCTTCTTTGGGCTTTTC+TGG | + | chr8.2:142477-142496 | None:intergenic | 45.0% |
! | TGGCCTTAGAATCTTTAGGC+TGG | + | chr8.2:142416-142435 | None:intergenic | 45.0% |
! | TTAGCCCGCAAGTATGCTTT+TGG | - | chr8.2:143421-143440 | MS.gene95042:intron | 45.0% |
! | TTTGGGTTCGTCGTTTACCT+TGG | + | chr8.2:142436-142455 | None:intergenic | 45.0% |
!! | AGGTTGGTGGATTTCTTCAG+CGG | - | chr8.2:143392-143411 | MS.gene95042:CDS | 45.0% |
!! | CTAGGTAAGTATTGGAGGCA+AGG | + | chr8.2:142182-142201 | None:intergenic | 45.0% |
!! | GCCAACTAGGTAAGTATTGG+AGG | + | chr8.2:142187-142206 | None:intergenic | 45.0% |
!! | GCCTAAAGATTCTAAGGCCA+AGG | - | chr8.2:142416-142435 | MS.gene95042:CDS | 45.0% |
!!! | GGTGAGGCACAATTTTTTCG+CGG | - | chr8.2:142710-142729 | MS.gene95042:intron | 45.0% |
!! | TTATTTCATTTATTTAAATT+TGG | + | chr8.2:141539-141558 | None:intergenic | 5.0% |
!!! | AAACTTATTTTAAAATTAAT+TGG | - | chr8.2:141454-141473 | MS.gene95042:intron | 5.0% |
!!! | AATTAATTTTAAAATAAGTT+TGG | + | chr8.2:141455-141474 | None:intergenic | 5.0% |
!!! | ATTAATTTTAAAATAAGTTT+GGG | + | chr8.2:141454-141473 | None:intergenic | 5.0% |
AACAGAGGTTCCCCCTCAAA+AGG | + | chr8.2:143634-143653 | None:intergenic | 50.0% | |
AAGACAGGAACCTTGCCAAG+AGG | + | chr8.2:141035-141054 | None:intergenic | 50.0% | |
AAGCACTTGGCATCCAACAG+AGG | + | chr8.2:143649-143668 | None:intergenic | 50.0% | |
ACCCAAAAAGGAGGCCAAGA+AGG | - | chr8.2:142449-142468 | MS.gene95042:CDS | 50.0% | |
ACGGACACTGACACATTCCT+CGG | - | chr8.2:141892-141911 | MS.gene95042:intron | 50.0% | |
CGACATGAATCCTCTTGGCA+AGG | - | chr8.2:141022-141041 | MS.gene95042:CDS | 50.0% | |
CTCAAAGACAGGACCATCAG+GGG | + | chr8.2:141063-141082 | None:intergenic | 50.0% | |
CTCGACATGAGGAAACTCTG+AGG | + | chr8.2:142289-142308 | None:intergenic | 50.0% | |
CTCTCAAAGACAGGACCATC+AGG | + | chr8.2:141065-141084 | None:intergenic | 50.0% | |
GATACGGTGTGGCATGGATT+GGG | + | chr8.2:141432-141451 | None:intergenic | 50.0% | |
GGATTCTTGGGTTTGGGCTT+GGG | + | chr8.2:142513-142532 | None:intergenic | 50.0% | |
GTTGGGGAGAGAAGACTTAC+TGG | + | chr8.2:141356-141375 | None:intergenic | 50.0% | |
TCTTGGCAAGGTTCCTGTCT+TGG | - | chr8.2:141034-141053 | MS.gene95042:CDS | 50.0% | |
TGTCCGTATCCGTGCTTCAT+AGG | - | chr8.2:142012-142031 | MS.gene95042:intron | 50.0% | |
TTTGTGATTGTACGCAGGGG+CGG | - | chr8.2:142669-142688 | MS.gene95042:intron | 50.0% | |
! | CACCTTCTTGGCCTCCTTTT+TGG | + | chr8.2:142454-142473 | None:intergenic | 50.0% |
!! | AAAATCAGCTTGGGCTGGTG+TGG | - | chr8.2:143130-143149 | MS.gene95042:intron | 50.0% |
!! | AACCAGAGAGAGTACCCTTC+AGG | + | chr8.2:143319-143338 | None:intergenic | 50.0% |
!! | ATCCTGAAGGGTACTCTCTC+TGG | - | chr8.2:143314-143333 | MS.gene95042:CDS | 50.0% |
!! | GTGTCAGATTTGGTGTGTCC+CGG | + | chr8.2:141919-141938 | None:intergenic | 50.0% |
!! | TGGTGGATTTCTTCAGCGGA+TGG | - | chr8.2:143396-143415 | MS.gene95042:intron | 50.0% |
!! | TTTTGAGGGGGAACCTCTGT+TGG | - | chr8.2:143633-143652 | MS.gene95042:CDS | 50.0% |
!!! | CGGTTCTGAGCCACCTTTTA+AGG | - | chr8.2:143459-143478 | MS.gene95042:intron | 50.0% |
ACTGACACATTCCTCGGACC+GGG | - | chr8.2:141898-141917 | MS.gene95042:intron | 55.0% | |
CACTGACACATTCCTCGGAC+CGG | - | chr8.2:141897-141916 | MS.gene95042:intron | 55.0% | |
CAGCTTCAGCCTGCTTGACT+TGG | + | chr8.2:142362-142381 | None:intergenic | 55.0% | |
CCATCAGGGGTTTCCAAGAC+AGG | + | chr8.2:141050-141069 | None:intergenic | 55.0% | |
CCTGTCTTGGAAACCCCTGA+TGG | - | chr8.2:141047-141066 | MS.gene95042:CDS | 55.0% | |
GGATACGGTGTGGCATGGAT+TGG | + | chr8.2:141433-141452 | None:intergenic | 55.0% | |
GGGATTCTTGGGTTTGGGCT+TGG | + | chr8.2:142514-142533 | None:intergenic | 55.0% | |
GGGGAGAGAAGACTTACTGG+AGG | + | chr8.2:141353-141372 | None:intergenic | 55.0% | |
GGGTAGCCAAAGCTACCCTT+TGG | - | chr8.2:141772-141791 | MS.gene95042:intron | 55.0% | |
! | AAGGGGTTGTGGCTTTTCCG+TGG | - | chr8.2:143484-143503 | MS.gene95042:intron | 55.0% |
! | AGGGGTTGTGGCTTTTCCGT+GGG | - | chr8.2:143485-143504 | MS.gene95042:intron | 55.0% |
! | GTTTGGGATACGGTGTGGCA+TGG | + | chr8.2:141438-141457 | None:intergenic | 55.0% |
!! | GGGCTTTTCTGGCACCTTCT+TGG | + | chr8.2:142466-142485 | None:intergenic | 55.0% |
AATCAGGGGCGGACCTGAAC+AGG | + | chr8.2:143173-143192 | None:intergenic | 60.0% | |
AGTTGGCCACTCTGTCACCC+TGG | - | chr8.2:142200-142219 | MS.gene95042:CDS | 60.0% | |
ATTGTACGCAGGGGCGGATC+TGG | - | chr8.2:142675-142694 | MS.gene95042:intron | 60.0% | |
GACCTGAACAGGTCCTGGTG+TGG | + | chr8.2:143162-143181 | None:intergenic | 60.0% | |
GGGTGACAGAGTGGCCAACT+AGG | + | chr8.2:142200-142219 | None:intergenic | 60.0% | |
TGCCACACCAGGACCTGTTC+AGG | - | chr8.2:143157-143176 | MS.gene95042:intron | 60.0% | |
TGTCAGCCAGGGTGACAGAG+TGG | + | chr8.2:142209-142228 | None:intergenic | 60.0% | |
!! | ACGGTGTGGCATGGATTGGG+TGG | + | chr8.2:141429-141448 | None:intergenic | 60.0% |
!! | ATTTGGTGTGTCCCGGTCCG+AGG | + | chr8.2:141912-141931 | None:intergenic | 60.0% |
GGTGTGGCACTTGCCACACC+AGG | - | chr8.2:143146-143165 | MS.gene95042:intron | 65.0% | |
GGGCGGACCTGAACAGGTCC+TGG | + | chr8.2:143167-143186 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 140990 | 143675 | 140990 | ID=MS.gene95042 |
chr8.2 | mRNA | 140990 | 143675 | 140990 | ID=MS.gene95042.t1;Parent=MS.gene95042 |
chr8.2 | exon | 143511 | 143675 | 143511 | ID=MS.gene95042.t1.exon1;Parent=MS.gene95042.t1 |
chr8.2 | CDS | 143511 | 143675 | 143511 | ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1 |
chr8.2 | exon | 143310 | 143411 | 143310 | ID=MS.gene95042.t1.exon2;Parent=MS.gene95042.t1 |
chr8.2 | CDS | 143310 | 143411 | 143310 | ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1 |
chr8.2 | exon | 142038 | 142542 | 142038 | ID=MS.gene95042.t1.exon3;Parent=MS.gene95042.t1 |
chr8.2 | CDS | 142038 | 142542 | 142038 | ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1 |
chr8.2 | exon | 140990 | 141369 | 140990 | ID=MS.gene95042.t1.exon4;Parent=MS.gene95042.t1 |
chr8.2 | CDS | 140990 | 141369 | 140990 | ID=cds.MS.gene95042.t1;Parent=MS.gene95042.t1 |
Gene Sequence |
Protein sequence |