Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04200.t1 | XP_013460045.1 | 95.7 | 419 | 18 | 0 | 1 | 419 | 1 | 419 | 6.50E-215 | 756.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04200.t1 | Q9FUM1 | 80.3 | 422 | 80 | 2 | 1 | 419 | 1 | 422 | 5.2e-181 | 635.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04200.t1 | A0A072UXB1 | 95.7 | 419 | 18 | 0 | 1 | 419 | 1 | 419 | 4.7e-215 | 756.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002011 | MS.gene04200 | PPI |
| MS.gene04296 | MS.gene04200 | PPI |
| MS.gene94948 | MS.gene04200 | PPI |
| MS.gene051739 | MS.gene04200 | PPI |
| MS.gene95042 | MS.gene04200 | PPI |
| MS.gene047236 | MS.gene04200 | PPI |
| MS.gene04200 | MS.gene43488 | PPI |
| MS.gene04200 | MS.gene027317 | PPI |
| MS.gene04200 | MS.gene84450 | PPI |
| MS.gene012799 | MS.gene04200 | PPI |
| MS.gene042040 | MS.gene04200 | PPI |
| MS.gene04200 | MS.gene072093 | PPI |
| MS.gene023009 | MS.gene04200 | PPI |
| MS.gene00585 | MS.gene04200 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04200.t1 | MTR_3g058940 | 97.136 | 419 | 12 | 0 | 1 | 419 | 1 | 419 | 0.0 | 850 |
| MS.gene04200.t1 | MTR_2g005570 | 88.305 | 419 | 45 | 3 | 2 | 419 | 3 | 418 | 0.0 | 743 |
| MS.gene04200.t1 | MTR_2g005570 | 88.067 | 419 | 46 | 3 | 2 | 419 | 3 | 418 | 0.0 | 741 |
| MS.gene04200.t1 | MTR_4g134770 | 79.286 | 420 | 85 | 2 | 1 | 419 | 1 | 419 | 0.0 | 667 |
| MS.gene04200.t1 | MTR_4g134770 | 81.299 | 385 | 70 | 2 | 36 | 419 | 1 | 384 | 0.0 | 623 |
| MS.gene04200.t1 | MTR_1g088850 | 26.415 | 212 | 145 | 4 | 1 | 203 | 1 | 210 | 6.62e-13 | 68.2 |
| MS.gene04200.t1 | MTR_3g064700 | 31.008 | 129 | 80 | 4 | 40 | 160 | 40 | 167 | 3.40e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04200.t1 | AT1G09640 | 76.190 | 420 | 93 | 4 | 1 | 419 | 1 | 414 | 0.0 | 646 |
| MS.gene04200.t1 | AT1G57720 | 75.476 | 420 | 95 | 5 | 1 | 419 | 1 | 413 | 0.0 | 632 |
| MS.gene04200.t1 | AT1G57720 | 75.476 | 420 | 95 | 5 | 1 | 419 | 1 | 413 | 0.0 | 632 |
| MS.gene04200.t1 | AT1G09640 | 69.608 | 204 | 61 | 1 | 1 | 203 | 1 | 204 | 1.68e-100 | 300 |
| MS.gene04200.t1 | AT1G09640 | 84.932 | 73 | 10 | 1 | 348 | 419 | 193 | 265 | 1.38e-34 | 129 |
| MS.gene04200.t1 | AT3G62760 | 26.190 | 210 | 144 | 4 | 1 | 201 | 1 | 208 | 8.32e-14 | 70.9 |
| MS.gene04200.t1 | AT2G30870 | 28.571 | 189 | 108 | 7 | 1 | 175 | 1 | 176 | 9.91e-13 | 67.4 |
| MS.gene04200.t1 | AT2G30860 | 30.769 | 156 | 98 | 3 | 12 | 160 | 14 | 166 | 6.31e-12 | 65.1 |
Find 125 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGACTTGCAGGATTC+TGG | 0.045791 | 3.3:-48267112 | MS.gene04200:intron |
| CCGAATATCTTTCGGAAATT+TGG | 0.136668 | 3.3:+48267601 | None:intergenic |
| TGGATCAGAGCCTCCATTTA+AGG | 0.199866 | 3.3:-48266934 | MS.gene04200:CDS |
| TTTGGAAAGATGCTTATAAT+TGG | 0.211636 | 3.3:-48266954 | MS.gene04200:CDS |
| ACAGCATGCAACTTGTATTT+AGG | 0.219925 | 3.3:-48267703 | MS.gene04200:CDS |
| AGGATTCTTGGGTTTGGGCT+TGG | 0.229246 | 3.3:+48267423 | None:intergenic |
| CTCTTCAGCTTCTACAACTT+TGG | 0.232663 | 3.3:+48267453 | None:intergenic |
| TCTGATTTAGCCACTTTCTT+TGG | 0.234756 | 3.3:+48267487 | None:intergenic |
| GGATTCTTGGGTTTGGGCTT+GGG | 0.257138 | 3.3:+48267424 | None:intergenic |
| CACAACCCCTTCACCTTAAA+TGG | 0.280661 | 3.3:+48266921 | None:intergenic |
| TCCTCCAAGCAAGATGGTTT+TGG | 0.282341 | 3.3:-48267389 | MS.gene04200:CDS |
| CTGGCTCGCAAGTATGCTTT+TGG | 0.282861 | 3.3:-48266972 | MS.gene04200:CDS |
| AAGAAGATCTAGAGGATTCT+TGG | 0.312345 | 3.3:+48267411 | None:intergenic |
| ATTTGAGGGAGAGGCTCTTT+TGG | 0.313654 | 3.3:-48266760 | MS.gene04200:CDS |
| TCTTCAGCTTCTACAACTTT+GGG | 0.316405 | 3.3:+48267454 | None:intergenic |
| CCAAATTTCCGAAAGATATT+CGG | 0.318144 | 3.3:-48267601 | MS.gene04200:CDS |
| ATCTAGAGGATTCTTGGGTT+TGG | 0.321575 | 3.3:+48267417 | None:intergenic |
| TTTATCAACATGAATCCTAT+TGG | 0.321878 | 3.3:-48269534 | MS.gene04200:CDS |
| CGTTTGACTTGCAGGATTCT+GGG | 0.329918 | 3.3:-48267111 | MS.gene04200:intron |
| TCTAGAGGATTCTTGGGTTT+GGG | 0.331606 | 3.3:+48267418 | None:intergenic |
| TTGGGTGAAAACAACTTGTT+TGG | 0.332485 | 3.3:-48268788 | MS.gene04200:CDS |
| TGCATCTTTAGTTGTGGGCT+TGG | 0.341316 | 3.3:+48267510 | None:intergenic |
| TGGGCTTGGATTCCTTAGGC+TGG | 0.343102 | 3.3:+48267524 | None:intergenic |
| TTTCTTATAGGTTCCGGTCT+TGG | 0.352519 | 3.3:-48269403 | MS.gene04200:intron |
| GAAACACCCATCTGAAAATC+TGG | 0.353987 | 3.3:+48269573 | None:intergenic |
| TTTGGTGCATCTTTAGTTGT+GGG | 0.356845 | 3.3:+48267505 | None:intergenic |
| CTCTCAAAGACGGGACCATC+CGG | 0.363995 | 3.3:+48269375 | None:intergenic |
| ATAAATAATACCTTTCCAAT+AGG | 0.368947 | 3.3:+48269519 | None:intergenic |
| TGGATTCCTTAGGCTGGGTA+GGG | 0.376997 | 3.3:+48267530 | None:intergenic |
| TTGGATTCCTTAGGCTGGGT+AGG | 0.380857 | 3.3:+48267529 | None:intergenic |
| CTCATGTTGAGAGATACTTC+TGG | 0.381009 | 3.3:-48267639 | MS.gene04200:CDS |
| CAGCGGCATCAAAGTTGAAT+TGG | 0.383885 | 3.3:-48269598 | MS.gene04200:CDS |
| CTTTGCTGCAGTTGCACGAT+TGG | 0.396776 | 3.3:-48268807 | MS.gene04200:intron |
| CATTCATCCATGATAAGCTT+TGG | 0.403066 | 3.3:+48266876 | None:intergenic |
| CATTTAAGGTGAAGGGGTTG+TGG | 0.403530 | 3.3:-48266920 | MS.gene04200:CDS |
| TAACCTGGCCGAATATCTTT+CGG | 0.403734 | 3.3:+48267593 | None:intergenic |
| TTCTTCCACAGTCATGGCTC+TGG | 0.408438 | 3.3:-48269768 | None:intergenic |
| AGAAGATCTAGAGGATTCTT+GGG | 0.430254 | 3.3:+48267412 | None:intergenic |
| GACCTCACGGAAGTTGGTCT+TGG | 0.430255 | 3.3:+48267339 | None:intergenic |
| TGGTGGGTTTCTTCAAAGAA+TGG | 0.433281 | 3.3:-48266997 | MS.gene04200:CDS |
| GTCATTGAAGAGAGCATTTG+AGG | 0.435935 | 3.3:-48267794 | MS.gene04200:CDS |
| GTTTCTTCAAAGAATGGATC+TGG | 0.437648 | 3.3:-48266991 | MS.gene04200:CDS |
| TTTAGGTTTCGCTCAACTCT+TGG | 0.441769 | 3.3:-48267686 | MS.gene04200:CDS |
| CTTTGGTGCATCTTTAGTTG+TGG | 0.442321 | 3.3:+48267504 | None:intergenic |
| ATCCAGAGGGATATTCTCTC+TGG | 0.453121 | 3.3:-48267079 | MS.gene04200:CDS |
| GGGGTCTTAGCAGATGGAAT+AGG | 0.453847 | 3.3:+48267550 | None:intergenic |
| GAAACTTACTGGAGCAAAGT+AGG | 0.462929 | 3.3:+48268087 | None:intergenic |
| AAAAGAGCCTCTCCCTCAAA+TGG | 0.463286 | 3.3:+48266762 | None:intergenic |
| TGTTTCCCTTCTGAGCGTGC+AGG | 0.465505 | 3.3:+48269655 | None:intergenic |
| TAGCTTCAGTTTGCTTAACC+TGG | 0.466563 | 3.3:+48267578 | None:intergenic |
| AAACTTACTGGAGCAAAGTA+GGG | 0.468959 | 3.3:+48268088 | None:intergenic |
| TTTCCGAAAGATATTCGGCC+AGG | 0.479571 | 3.3:-48267596 | MS.gene04200:CDS |
| GTAGATCCTGCACGCTCAGA+AGG | 0.482060 | 3.3:-48269661 | MS.gene04200:intron |
| CTCACAATACCTACCTGGTT+GGG | 0.483114 | 3.3:-48267753 | MS.gene04200:CDS |
| GTTGTGGGCTTGGATTCCTT+AGG | 0.483225 | 3.3:+48267520 | None:intergenic |
| TTTGCTGCAGTTGCACGATT+GGG | 0.483835 | 3.3:-48268806 | MS.gene04200:intron |
| GGGCTTGGATTCCTTAGGCT+GGG | 0.484151 | 3.3:+48267525 | None:intergenic |
| GGATTCCTTAGGCTGGGTAG+GGG | 0.487591 | 3.3:+48267531 | None:intergenic |
| CAAAGTTGTAGAAGCTGAAG+AGG | 0.492104 | 3.3:-48267452 | MS.gene04200:CDS |
| CCATCCGGGGTTTCCAAGAC+CGG | 0.493979 | 3.3:+48269390 | None:intergenic |
| TCATCCAAAACCATCTTGCT+TGG | 0.496743 | 3.3:+48267385 | None:intergenic |
| ATATCTTTCGGAAATTTGGC+TGG | 0.499145 | 3.3:+48267605 | None:intergenic |
| GATTGCGACCTCACGGAAGT+TGG | 0.507774 | 3.3:+48267333 | None:intergenic |
| GAGCCTCCATTTAAGGTGAA+GGG | 0.508653 | 3.3:-48266927 | MS.gene04200:CDS |
| TCCAAAACCATCTTGCTTGG+AGG | 0.513832 | 3.3:+48267388 | None:intergenic |
| ATCGCATTGCTCTCAAAGAC+GGG | 0.515235 | 3.3:+48269366 | None:intergenic |
| TTCCGTGAGGTCGCAATCAA+AGG | 0.519400 | 3.3:-48267328 | MS.gene04200:intron |
| AGAGATTCCAAAGCTTATCA+TGG | 0.519514 | 3.3:-48266883 | MS.gene04200:CDS |
| TAAAGATGCACCAAAGAAAG+TGG | 0.525965 | 3.3:-48267497 | MS.gene04200:CDS |
| TCTTCTTCCTCCAAGCAAGA+TGG | 0.531928 | 3.3:-48267395 | MS.gene04200:CDS |
| ATCAATCCATTGTTCAATGT+GGG | 0.540112 | 3.3:+48268174 | None:intergenic |
| CCTTGCTCACAATACCTACC+TGG | 0.540810 | 3.3:-48267758 | MS.gene04200:CDS |
| CATCGCATTGCTCTCAAAGA+CGG | 0.541110 | 3.3:+48269365 | None:intergenic |
| TCTCAAAGACGGGACCATCC+GGG | 0.544929 | 3.3:+48269376 | None:intergenic |
| TACCTTTGATTGCGACCTCA+CGG | 0.549156 | 3.3:+48267326 | None:intergenic |
| AAAATCTTCAATCATCTGAC+TGG | 0.550866 | 3.3:+48266788 | None:intergenic |
| TGACACTGAACAAGGTTGGT+GGG | 0.551452 | 3.3:-48267013 | MS.gene04200:CDS |
| GCTCACAATACCTACCTGGT+TGG | 0.554794 | 3.3:-48267754 | MS.gene04200:CDS |
| TTCGTGACACTGAACAAGGT+TGG | 0.558246 | 3.3:-48267017 | MS.gene04200:CDS |
| AATCAATCCATTGTTCAATG+TGG | 0.559296 | 3.3:+48268173 | None:intergenic |
| TGGATCATCTCCTATTGACC+AGG | 0.560617 | 3.3:-48268768 | MS.gene04200:intron |
| AGAGCCTCCATTTAAGGTGA+AGG | 0.562476 | 3.3:-48266928 | MS.gene04200:CDS |
| CTTGGAGGAAGAAGATCTAG+AGG | 0.562656 | 3.3:+48267403 | None:intergenic |
| GTAGGTATTGTGAGCAAGGT+GGG | 0.563350 | 3.3:+48267762 | None:intergenic |
| CTCAAAGACGGGACCATCCG+GGG | 0.563554 | 3.3:+48269377 | None:intergenic |
| TTCTTTCGTGACACTGAACA+AGG | 0.563971 | 3.3:-48267021 | MS.gene04200:CDS |
| CCAGGTAGGTATTGTGAGCA+AGG | 0.565174 | 3.3:+48267758 | None:intergenic |
| AACCAGAGAGAATATCCCTC+TGG | 0.572768 | 3.3:+48267077 | None:intergenic |
| AAGTTGTATCGGCCAAGACA+TGG | 0.573616 | 3.3:-48268118 | MS.gene04200:CDS |
| ACAACATTATGAAGTTGTAT+CGG | 0.574030 | 3.3:-48268129 | MS.gene04200:CDS |
| TAAGACCCCTACCCAGCCTA+AGG | 0.574970 | 3.3:-48267536 | MS.gene04200:CDS |
| CAACATGAATCCTATTGGAA+AGG | 0.578803 | 3.3:-48269529 | MS.gene04200:intron |
| GTGACACTGAACAAGGTTGG+TGG | 0.579111 | 3.3:-48267014 | MS.gene04200:CDS |
| AGCAATGCGATGGCTCGCTA+TGG | 0.587860 | 3.3:-48269354 | MS.gene04200:intron |
| TTCAGGCCCACATTGAACAA+TGG | 0.590867 | 3.3:-48268180 | MS.gene04200:intron |
| AGCCTCCATTTAAGGTGAAG+GGG | 0.592740 | 3.3:-48266926 | MS.gene04200:CDS |
| TGCTGTTATAATGTCAGCAA+GGG | 0.594550 | 3.3:+48267720 | None:intergenic |
| ACGCTCTTTCTGAGCTTCGT+CGG | 0.595731 | 3.3:+48266812 | None:intergenic |
| GTCTTAGCAGATGGAATAGG+TGG | 0.598600 | 3.3:+48267553 | None:intergenic |
| CTGGGACATGTATGATCCAG+AGG | 0.600612 | 3.3:-48267093 | MS.gene04200:CDS |
| TGTCTAAATGTAGGTAGAGG+AGG | 0.601960 | 3.3:-48267827 | MS.gene04200:intron |
| GCTTTGGAATCTCTTGTCCA+CGG | 0.602672 | 3.3:+48266892 | None:intergenic |
| TTCGTCGGAGATGTCAACCT+TGG | 0.603692 | 3.3:+48266827 | None:intergenic |
| TAGATCCTGCACGCTCAGAA+GGG | 0.604424 | 3.3:-48269660 | MS.gene04200:CDS |
| GGGTAACAGAATGCCCAACC+AGG | 0.610540 | 3.3:+48267740 | None:intergenic |
| GAAATTTGGCTGGTTCAGCA+AGG | 0.612568 | 3.3:+48267615 | None:intergenic |
| CCGGTCTTGGAAACCCCGGA+TGG | 0.613472 | 3.3:-48269390 | MS.gene04200:CDS |
| CGTCTTTGAGAGCAATGCGA+TGG | 0.616668 | 3.3:-48269364 | MS.gene04200:CDS |
| AACTTACTGGAGCAAAGTAG+GGG | 0.616700 | 3.3:+48268089 | None:intergenic |
| TGGGTAGGGGTCTTAGCAGA+TGG | 0.618263 | 3.3:+48267544 | None:intergenic |
| ATGCTGTTATAATGTCAGCA+AGG | 0.621915 | 3.3:+48267719 | None:intergenic |
| CAGAAGTATCTCTCAACATG+AGG | 0.629855 | 3.3:+48267640 | None:intergenic |
| CATGGATGAATGCTATGACA+TGG | 0.631015 | 3.3:-48266865 | MS.gene04200:CDS |
| GGTAGGTATTGTGAGCAAGG+TGG | 0.640768 | 3.3:+48267761 | None:intergenic |
| GGTTCCGGTCTTGGAAACCC+CGG | 0.645477 | 3.3:-48269394 | MS.gene04200:CDS |
| AACCCCTTCACCTTAAATGG+AGG | 0.653598 | 3.3:+48266924 | None:intergenic |
| CTGATTGCTGCTGAATACAG+CGG | 0.659543 | 3.3:-48269615 | MS.gene04200:CDS |
| TGGGACATGTATGATCCAGA+GGG | 0.668464 | 3.3:-48267092 | MS.gene04200:CDS |
| GGATTCATGTTGATAAACTG+AGG | 0.670225 | 3.3:+48269540 | None:intergenic |
| ACTTACTGGAGCAAAGTAGG+GGG | 0.673115 | 3.3:+48268090 | None:intergenic |
| ATGACATGGAGCTGTATGAG+TGG | 0.681725 | 3.3:-48266851 | MS.gene04200:CDS |
| AACAGAATGCCCAACCAGGT+AGG | 0.711223 | 3.3:+48267744 | None:intergenic |
| CTCAACATGAGGAAACTCTG+AGG | 0.714280 | 3.3:+48267651 | None:intergenic |
| CACCAAGACCAACTTCCGTG+AGG | 0.739745 | 3.3:-48267341 | MS.gene04200:CDS |
| GGAGCTGTATGAGTGGACCA+AGG | 0.785376 | 3.3:-48266844 | MS.gene04200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCTAATTGCAATTTTTT+TGG | - | chr3.3:48266807-48266826 | MS.gene04200:CDS | 15.0% |
| !!! | TGTGATGATTTTATTTAATT+GGG | - | chr3.3:48267203-48267222 | MS.gene04200:intron | 15.0% |
| !!! | TTGTGATGATTTTATTTAAT+TGG | - | chr3.3:48267202-48267221 | MS.gene04200:intron | 15.0% |
| !! | AAAAAACATGGTAGAAAATA+GGG | - | chr3.3:48267400-48267419 | MS.gene04200:CDS | 20.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | - | chr3.3:48267525-48267544 | MS.gene04200:CDS | 20.0% |
| !! | ATAAATAATACCTTTCCAAT+AGG | + | chr3.3:48266979-48266998 | None:intergenic | 20.0% |
| !! | ATATAGTATCACACTAAAAA+TGG | + | chr3.3:48268231-48268250 | None:intergenic | 20.0% |
| !! | CTATATGCATTATTAATATG+TGG | - | chr3.3:48268245-48268264 | MS.gene04200:intron | 20.0% |
| !! | TAAAAAACATGGTAGAAAAT+AGG | - | chr3.3:48267399-48267418 | MS.gene04200:CDS | 20.0% |
| !! | TTAGACACAAATTTCAAAAA+CGG | + | chr3.3:48268655-48268674 | None:intergenic | 20.0% |
| !! | TTCTATCATAAACCATATTA+TGG | + | chr3.3:48267578-48267597 | None:intergenic | 20.0% |
| !!! | AATGTCAAAATTTGTTAATG+AGG | - | chr3.3:48269334-48269353 | MS.gene04200:intron | 20.0% |
| !!! | AGATTAGTTATTAATAACTG+AGG | + | chr3.3:48266793-48266812 | None:intergenic | 20.0% |
| !!! | AGTTTCTCTTATAGTTTTTT+AGG | + | chr3.3:48267522-48267541 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGCTATCTAAAA+CGG | - | chr3.3:48267022-48267041 | MS.gene04200:CDS | 20.0% |
| !!! | GTTTCTCTTATAGTTTTTTA+GGG | + | chr3.3:48267521-48267540 | None:intergenic | 20.0% |
| !!! | TATAATGTTTTATGATCAGT+TGG | - | chr3.3:48268523-48268542 | MS.gene04200:intron | 20.0% |
| !!! | TGTTGTTGTTTAATTTTGTT+TGG | - | chr3.3:48267665-48267684 | MS.gene04200:CDS | 20.0% |
| !!! | TTATTATTTCTTATAGGTTC+CGG | - | chr3.3:48267086-48267105 | MS.gene04200:CDS | 20.0% |
| !!! | TTGAAAAGTTTTCATGATTA+TGG | - | chr3.3:48267900-48267919 | MS.gene04200:intron | 20.0% |
| ! | AACTATTAGGAAAAACTTAG+AGG | - | chr3.3:48267538-48267557 | MS.gene04200:CDS | 25.0% |
| ! | AATATGTGGTTTATCTTTCT+TGG | - | chr3.3:48268259-48268278 | MS.gene04200:intron | 25.0% |
| ! | AATCGAAGTAATTGAAATAG+GGG | + | chr3.3:48266767-48266786 | None:intergenic | 25.0% |
| ! | ACAACATTATGAAGTTGTAT+CGG | - | chr3.3:48268366-48268385 | MS.gene04200:intron | 25.0% |
| ! | AGAATCGAAGTAATTGAAAT+AGG | + | chr3.3:48266769-48266788 | None:intergenic | 25.0% |
| ! | CAAATTACAAGTAGAATATC+AGG | + | chr3.3:48268291-48268310 | None:intergenic | 25.0% |
| ! | CGAGAATAAAATAAATGTAG+CGG | - | chr3.3:48267284-48267303 | MS.gene04200:intron | 25.0% |
| ! | CTACAGTATATTCATCATAA+AGG | + | chr3.3:48269309-48269328 | None:intergenic | 25.0% |
| ! | CTAGAATAGTATATTTCCAA+AGG | + | chr3.3:48269266-48269285 | None:intergenic | 25.0% |
| ! | GAATCGAAGTAATTGAAATA+GGG | + | chr3.3:48266768-48266787 | None:intergenic | 25.0% |
| ! | GATAAAACAAAAAATGTACC+TGG | + | chr3.3:48267748-48267767 | None:intergenic | 25.0% |
| ! | TAACATCATATGAAACTTAC+TGG | + | chr3.3:48268422-48268441 | None:intergenic | 25.0% |
| ! | TAGACACAAATTTCAAAAAC+GGG | + | chr3.3:48268654-48268673 | None:intergenic | 25.0% |
| ! | TGAAATTTGTGTCTAAATGT+AGG | - | chr3.3:48268659-48268678 | MS.gene04200:intron | 25.0% |
| ! | TTCACTTATAATAGCAAAAC+TGG | + | chr3.3:48267794-48267813 | None:intergenic | 25.0% |
| ! | TTTATCAACATGAATCCTAT+TGG | - | chr3.3:48266961-48266980 | MS.gene04200:CDS | 25.0% |
| ! | TTTGGAAAGATGCTTATAAT+TGG | - | chr3.3:48269541-48269560 | MS.gene04200:CDS | 25.0% |
| !! | AAAAGTTTTCATGATTATGG+TGG | - | chr3.3:48267903-48267922 | MS.gene04200:intron | 25.0% |
| !! | TACTATTCTAGCAATGTTTT+TGG | - | chr3.3:48269275-48269294 | MS.gene04200:intron | 25.0% |
| !!! | ATGGATTGATTTTTCTTCTA+CGG | - | chr3.3:48268334-48268353 | MS.gene04200:intron | 25.0% |
| !!! | CATTTATTTTATTCTCGTGT+TGG | + | chr3.3:48267281-48267300 | None:intergenic | 25.0% |
| !!! | TATTAATTTGCTTCGTTAAC+TGG | - | chr3.3:48268457-48268476 | MS.gene04200:intron | 25.0% |
| !!! | TCTACCATGTTTTTTACAAT+AGG | + | chr3.3:48267395-48267414 | None:intergenic | 25.0% |
| !!! | TTGATTTTGCTATCTAAAAC+GGG | - | chr3.3:48267023-48267042 | MS.gene04200:CDS | 25.0% |
| !!! | TTTAAGTTTTTGTAGCTTCT+AGG | - | chr3.3:48269220-48269239 | MS.gene04200:intron | 25.0% |
| AAAAAATGTACCTGGTCAAT+AGG | + | chr3.3:48267740-48267759 | None:intergenic | 30.0% | |
| AAAATCTTCAATCATCTGAC+TGG | + | chr3.3:48269710-48269729 | None:intergenic | 30.0% | |
| AACGGGAAAAATTCAGTAAA+AGG | + | chr3.3:48268637-48268656 | None:intergenic | 30.0% | |
| AACTTAGAGGATTAATGAGT+TGG | - | chr3.3:48267551-48267570 | MS.gene04200:CDS | 30.0% | |
| AATCAATCCATTGTTCAATG+TGG | + | chr3.3:48268325-48268344 | None:intergenic | 30.0% | |
| ACGGGAAAAATTCAGTAAAA+GGG | + | chr3.3:48268636-48268655 | None:intergenic | 30.0% | |
| AGCACCTATTGTAAAAAACA+TGG | - | chr3.3:48267388-48267407 | MS.gene04200:CDS | 30.0% | |
| ATCAATCCATTGTTCAATGT+GGG | + | chr3.3:48268324-48268343 | None:intergenic | 30.0% | |
| ATGACAATATTAGAGAGAGT+TGG | - | chr3.3:48267361-48267380 | MS.gene04200:CDS | 30.0% | |
| CCAAATTTCCGAAAGATATT+CGG | - | chr3.3:48268894-48268913 | MS.gene04200:intron | 30.0% | |
| CTATGCCAATAATCTTAGTT+TGG | - | chr3.3:48267819-48267838 | MS.gene04200:intron | 30.0% | |
| TCTCATTACTACAGAATCTA+CGG | + | chr3.3:48267456-48267475 | None:intergenic | 30.0% | |
| TGACAATATTAGAGAGAGTT+GGG | - | chr3.3:48267362-48267381 | MS.gene04200:CDS | 30.0% | |
| TGATTGTAGCTTATATCCTT+TGG | - | chr3.3:48269247-48269266 | MS.gene04200:intron | 30.0% | |
| TGGTTTATCTTTCTTGGAAA+TGG | - | chr3.3:48268265-48268284 | MS.gene04200:intron | 30.0% | |
| TGGTTTATGATAGAACGTTA+TGG | - | chr3.3:48267583-48267602 | MS.gene04200:CDS | 30.0% | |
| TTCCACCAAACTAAGATTAT+TGG | + | chr3.3:48267827-48267846 | None:intergenic | 30.0% | |
| ! | AAATAAATGTAGCGGAAAAG+AGG | - | chr3.3:48267292-48267311 | MS.gene04200:intron | 30.0% |
| ! | GAGATTTTACGCAAAATCAT+CGG | + | chr3.3:48268185-48268204 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGACCATAATA+TGG | - | chr3.3:48267563-48267582 | MS.gene04200:CDS | 30.0% |
| ! | TGTGCTATGAGTTTGATTTA+AGG | - | chr3.3:48267960-48267979 | MS.gene04200:intron | 30.0% |
| !! | TACTTGTAATTTGCTGTTTC+AGG | - | chr3.3:48268298-48268317 | MS.gene04200:intron | 30.0% |
| !! | TTGTTTTATCGTTTCTGTCA+TGG | - | chr3.3:48267758-48267777 | MS.gene04200:CDS | 30.0% |
| AAACTTACTGGAGCAAAGTA+GGG | + | chr3.3:48268410-48268429 | None:intergenic | 35.0% | |
| AAGAAGATCTAGAGGATTCT+TGG | + | chr3.3:48269087-48269106 | None:intergenic | 35.0% | |
| AATCTCGACTTTAAGTACCT+TGG | - | chr3.3:48268199-48268218 | MS.gene04200:intron | 35.0% | |
| ACAATATTAGAGAGAGTTGG+GGG | - | chr3.3:48267364-48267383 | MS.gene04200:CDS | 35.0% | |
| ACAGCATGCAACTTGTATTT+AGG | - | chr3.3:48268792-48268811 | MS.gene04200:CDS | 35.0% | |
| AGAAGATCTAGAGGATTCTT+GGG | + | chr3.3:48269086-48269105 | None:intergenic | 35.0% | |
| AGAGATTCCAAAGCTTATCA+TGG | - | chr3.3:48269612-48269631 | MS.gene04200:CDS | 35.0% | |
| AGTAATGAGAGTAGATCAGA+TGG | - | chr3.3:48267466-48267485 | MS.gene04200:CDS | 35.0% | |
| ATATCTTTCGGAAATTTGGC+TGG | + | chr3.3:48268893-48268912 | None:intergenic | 35.0% | |
| ATGCTGTTATAATGTCAGCA+AGG | + | chr3.3:48268779-48268798 | None:intergenic | 35.0% | |
| CAACATGAATCCTATTGGAA+AGG | - | chr3.3:48266966-48266985 | MS.gene04200:CDS | 35.0% | |
| CATGCACAATAATGTTTACG+AGG | - | chr3.3:48266999-48267018 | MS.gene04200:CDS | 35.0% | |
| CATTCATCCATGATAAGCTT+TGG | + | chr3.3:48269622-48269641 | None:intergenic | 35.0% | |
| CCGAATATCTTTCGGAAATT+TGG | + | chr3.3:48268897-48268916 | None:intergenic | 35.0% | |
| CGGGAAAAATTCAGTAAAAG+GGG | + | chr3.3:48268635-48268654 | None:intergenic | 35.0% | |
| CTCATTACTACAGAATCTAC+GGG | + | chr3.3:48267455-48267474 | None:intergenic | 35.0% | |
| GAAAATAGGGTTAGATGGTT+TGG | - | chr3.3:48267413-48267432 | MS.gene04200:CDS | 35.0% | |
| GACAATATTAGAGAGAGTTG+GGG | - | chr3.3:48267363-48267382 | MS.gene04200:CDS | 35.0% | |
| GTATTGTGATTATGCTTCTG+TGG | - | chr3.3:48269189-48269208 | MS.gene04200:intron | 35.0% | |
| GTTTCTTCAAAGAATGGATC+TGG | - | chr3.3:48269504-48269523 | MS.gene04200:intron | 35.0% | |
| TAAAGATGCACCAAAGAAAG+TGG | - | chr3.3:48268998-48269017 | MS.gene04200:intron | 35.0% | |
| TCTTCAGCTTCTACAACTTT+GGG | + | chr3.3:48269044-48269063 | None:intergenic | 35.0% | |
| TGAATCCATCCATGATTAAC+AGG | + | chr3.3:48267865-48267884 | None:intergenic | 35.0% | |
| TGCTGTTATAATGTCAGCAA+GGG | + | chr3.3:48268778-48268797 | None:intergenic | 35.0% | |
| TGGTAGAAAATAGGGTTAGA+TGG | - | chr3.3:48267408-48267427 | MS.gene04200:CDS | 35.0% | |
| TTGTGTCTAAATGTAGGTAG+AGG | - | chr3.3:48268665-48268684 | MS.gene04200:intron | 35.0% | |
| ! | AGTTTTCATGATTATGGTGG+CGG | - | chr3.3:48267906-48267925 | MS.gene04200:intron | 35.0% |
| ! | GAAGATTTTGAGCCATTTGA+GGG | - | chr3.3:48269721-48269740 | MS.gene04200:intron | 35.0% |
| ! | GGATTCATGTTGATAAACTG+AGG | + | chr3.3:48266958-48266977 | None:intergenic | 35.0% |
| ! | TCTGATTTAGCCACTTTCTT+TGG | + | chr3.3:48269011-48269030 | None:intergenic | 35.0% |
| ! | TGAAGATTTTGAGCCATTTG+AGG | - | chr3.3:48269720-48269739 | MS.gene04200:intron | 35.0% |
| ! | TGCCAATAATCTTAGTTTGG+TGG | - | chr3.3:48267822-48267841 | MS.gene04200:intron | 35.0% |
| ! | TTCTACAACTTTGGGCTTTT+CGG | + | chr3.3:48269036-48269055 | None:intergenic | 35.0% |
| ! | TTGGGTGAAAACAACTTGTT+TGG | - | chr3.3:48267707-48267726 | MS.gene04200:CDS | 35.0% |
| ! | TTTGGTGCATCTTTAGTTGT+GGG | + | chr3.3:48268993-48269012 | None:intergenic | 35.0% |
| AAACCTTATCCCACTAAGTG+GGG | + | chr3.3:48267632-48267651 | None:intergenic | 40.0% | |
| AACTTACTGGAGCAAAGTAG+GGG | + | chr3.3:48268409-48268428 | None:intergenic | 40.0% | |
| AATGAGAGTAGATCAGATGG+AGG | - | chr3.3:48267469-48267488 | MS.gene04200:CDS | 40.0% | |
| ACTAAAAATGGAGCCAACCA+AGG | + | chr3.3:48268219-48268238 | None:intergenic | 40.0% | |
| ATCTAGAGGATTCTTGGGTT+TGG | + | chr3.3:48269081-48269100 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | + | chr3.3:48267633-48267652 | None:intergenic | 40.0% | |
| CAAAGTTGTAGAAGCTGAAG+AGG | - | chr3.3:48269043-48269062 | MS.gene04200:intron | 40.0% | |
| CAGTAAAAGGGGAAGTTAAC+AGG | + | chr3.3:48268624-48268643 | None:intergenic | 40.0% | |
| CATGGATGAATGCTATGACA+TGG | - | chr3.3:48269630-48269649 | MS.gene04200:CDS | 40.0% | |
| CTCATGTTGAGAGATACTTC+TGG | - | chr3.3:48268856-48268875 | MS.gene04200:intron | 40.0% | |
| CTCTTCAGCTTCTACAACTT+TGG | + | chr3.3:48269045-48269064 | None:intergenic | 40.0% | |
| GAAACACCCATCTGAAAATC+TGG | + | chr3.3:48266925-48266944 | None:intergenic | 40.0% | |
| GAAACTTACTGGAGCAAAGT+AGG | + | chr3.3:48268411-48268430 | None:intergenic | 40.0% | |
| GGAATCTCACCTGTTAATCA+TGG | - | chr3.3:48267853-48267872 | MS.gene04200:intron | 40.0% | |
| GTTGTAGGGAATTGAGTGTT+GGG | - | chr3.3:48267245-48267264 | MS.gene04200:intron | 40.0% | |
| TAACCTGGCCGAATATCTTT+CGG | + | chr3.3:48268905-48268924 | None:intergenic | 40.0% | |
| TCAATTCCCTACAACATCGT+CGG | + | chr3.3:48267240-48267259 | None:intergenic | 40.0% | |
| TCATCCAAAACCATCTTGCT+TGG | + | chr3.3:48269113-48269132 | None:intergenic | 40.0% | |
| TCGACTTTAAGTACCTTGGT+TGG | - | chr3.3:48268203-48268222 | MS.gene04200:intron | 40.0% | |
| TCTAGAGGATTCTTGGGTTT+GGG | + | chr3.3:48269080-48269099 | None:intergenic | 40.0% | |
| TCTCACCTGTTAATCATGGA+TGG | - | chr3.3:48267857-48267876 | MS.gene04200:intron | 40.0% | |
| TGTCTAAATGTAGGTAGAGG+AGG | - | chr3.3:48268668-48268687 | MS.gene04200:intron | 40.0% | |
| TGTTGTAGGGAATTGAGTGT+TGG | - | chr3.3:48267244-48267263 | MS.gene04200:intron | 40.0% | |
| TTCTTTCGTGACACTGAACA+AGG | - | chr3.3:48269474-48269493 | MS.gene04200:intron | 40.0% | |
| TTTCTTATAGGTTCCGGTCT+TGG | - | chr3.3:48267092-48267111 | MS.gene04200:CDS | 40.0% | |
| ! | CTTTGGTGCATCTTTAGTTG+TGG | + | chr3.3:48268994-48269013 | None:intergenic | 40.0% |
| ! | TAGCTTCAGTTTGCTTAACC+TGG | + | chr3.3:48268920-48268939 | None:intergenic | 40.0% |
| ! | TCTACAACTTTGGGCTTTTC+GGG | + | chr3.3:48269035-48269054 | None:intergenic | 40.0% |
| ! | TTGGCTCCAGATTTTCAGAT+GGG | - | chr3.3:48266916-48266935 | MS.gene04200:CDS | 40.0% |
| ! | TTTAGGTTTCGCTCAACTCT+TGG | - | chr3.3:48268809-48268828 | MS.gene04200:intron | 40.0% |
| !! | AATTTCTCCGTTTGACTTGC+AGG | - | chr3.3:48269376-48269395 | MS.gene04200:CDS | 40.0% |
| !! | ATTGGCTCCAGATTTTCAGA+TGG | - | chr3.3:48266915-48266934 | MS.gene04200:CDS | 40.0% |
| !! | CAGAAGTATCTCTCAACATG+AGG | + | chr3.3:48268858-48268877 | None:intergenic | 40.0% |
| !! | GTCATTGAAGAGAGCATTTG+AGG | - | chr3.3:48268701-48268720 | MS.gene04200:intron | 40.0% |
| !! | TGGTGGGTTTCTTCAAAGAA+TGG | - | chr3.3:48269498-48269517 | MS.gene04200:intron | 40.0% |
| AAAAGAGCCTCTCCCTCAAA+TGG | + | chr3.3:48269736-48269755 | None:intergenic | 45.0% | |
| AACCAGAGAGAATATCCCTC+TGG | + | chr3.3:48269421-48269440 | None:intergenic | 45.0% | |
| AACCCCTTCACCTTAAATGG+AGG | + | chr3.3:48269574-48269593 | None:intergenic | 45.0% | |
| ACTTACTGGAGCAAAGTAGG+GGG | + | chr3.3:48268408-48268427 | None:intergenic | 45.0% | |
| ATCCAGAGGGATATTCTCTC+TGG | - | chr3.3:48269416-48269435 | MS.gene04200:intron | 45.0% | |
| ATCGCATTGCTCTCAAAGAC+GGG | + | chr3.3:48267132-48267151 | None:intergenic | 45.0% | |
| ATGACATGGAGCTGTATGAG+TGG | - | chr3.3:48269644-48269663 | MS.gene04200:CDS | 45.0% | |
| CACAACCCCTTCACCTTAAA+TGG | + | chr3.3:48269577-48269596 | None:intergenic | 45.0% | |
| CAGCGGCATCAAAGTTGAAT+TGG | - | chr3.3:48266897-48266916 | MS.gene04200:CDS | 45.0% | |
| CATCGCATTGCTCTCAAAGA+CGG | + | chr3.3:48267133-48267152 | None:intergenic | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | + | chr3.3:48267634-48267653 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | - | chr3.3:48267631-48267650 | MS.gene04200:CDS | 45.0% | |
| CCAGAATCCTGCAAGTCAAA+CGG | + | chr3.3:48269386-48269405 | None:intergenic | 45.0% | |
| CTCAACATGAGGAAACTCTG+AGG | + | chr3.3:48268847-48268866 | None:intergenic | 45.0% | |
| CTCACAATACCTACCTGGTT+GGG | - | chr3.3:48268742-48268761 | MS.gene04200:intron | 45.0% | |
| CTGATTGCTGCTGAATACAG+CGG | - | chr3.3:48266880-48266899 | MS.gene04200:CDS | 45.0% | |
| CTTGGAGGAAGAAGATCTAG+AGG | + | chr3.3:48269095-48269114 | None:intergenic | 45.0% | |
| GTAAGACCGACGATGTTGTA+GGG | - | chr3.3:48267231-48267250 | MS.gene04200:intron | 45.0% | |
| GTCTTAGCAGATGGAATAGG+TGG | + | chr3.3:48268945-48268964 | None:intergenic | 45.0% | |
| TACCTTTGATTGCGACCTCA+CGG | + | chr3.3:48269172-48269191 | None:intergenic | 45.0% | |
| TAGGGGGAAAATCCATGTCT+TGG | + | chr3.3:48268392-48268411 | None:intergenic | 45.0% | |
| TCCAAAACCATCTTGCTTGG+AGG | + | chr3.3:48269110-48269129 | None:intergenic | 45.0% | |
| TCTTCTTCCTCCAAGCAAGA+TGG | - | chr3.3:48269100-48269119 | MS.gene04200:intron | 45.0% | |
| TGCATCTTTAGTTGTGGGCT+TGG | + | chr3.3:48268988-48269007 | None:intergenic | 45.0% | |
| TGGATCAGAGCCTCCATTTA+AGG | - | chr3.3:48269561-48269580 | MS.gene04200:CDS | 45.0% | |
| TGGATCATCTCCTATTGACC+AGG | - | chr3.3:48267727-48267746 | MS.gene04200:CDS | 45.0% | |
| TGGGACATGTATGATCCAGA+GGG | - | chr3.3:48269403-48269422 | MS.gene04200:intron | 45.0% | |
| TGTAAGACCGACGATGTTGT+AGG | - | chr3.3:48267230-48267249 | MS.gene04200:intron | 45.0% | |
| TTCAGGCCCACATTGAACAA+TGG | - | chr3.3:48268315-48268334 | MS.gene04200:intron | 45.0% | |
| TTCGTGACACTGAACAAGGT+TGG | - | chr3.3:48269478-48269497 | MS.gene04200:intron | 45.0% | |
| TTTCCGAAAGATATTCGGCC+AGG | - | chr3.3:48268899-48268918 | MS.gene04200:intron | 45.0% | |
| TTTGCTGCAGTTGCACGATT+GGG | - | chr3.3:48267689-48267708 | MS.gene04200:CDS | 45.0% | |
| ! | AAGTTGTATCGGCCAAGACA+TGG | - | chr3.3:48268377-48268396 | MS.gene04200:intron | 45.0% |
| ! | AGAGCCTCCATTTAAGGTGA+AGG | - | chr3.3:48269567-48269586 | MS.gene04200:CDS | 45.0% |
| ! | AGCCTCCATTTAAGGTGAAG+GGG | - | chr3.3:48269569-48269588 | MS.gene04200:CDS | 45.0% |
| ! | ATGTAGCGGAAAAGAGGATG+TGG | - | chr3.3:48267298-48267317 | MS.gene04200:intron | 45.0% |
| ! | ATTTGAGGGAGAGGCTCTTT+TGG | - | chr3.3:48269735-48269754 | MS.gene04200:intron | 45.0% |
| ! | CATTTAAGGTGAAGGGGTTG+TGG | - | chr3.3:48269575-48269594 | MS.gene04200:CDS | 45.0% |
| ! | CTTAGTTTGGTGGAATCGTG+TGG | - | chr3.3:48267832-48267851 | MS.gene04200:intron | 45.0% |
| ! | GAAATTTGGCTGGTTCAGCA+AGG | + | chr3.3:48268883-48268902 | None:intergenic | 45.0% |
| ! | GAGCCTCCATTTAAGGTGAA+GGG | - | chr3.3:48269568-48269587 | MS.gene04200:CDS | 45.0% |
| ! | GTAGGTATTGTGAGCAAGGT+GGG | + | chr3.3:48268736-48268755 | None:intergenic | 45.0% |
| ! | TCCTCCAAGCAAGATGGTTT+TGG | - | chr3.3:48269106-48269125 | MS.gene04200:intron | 45.0% |
| ! | TGACACTGAACAAGGTTGGT+GGG | - | chr3.3:48269482-48269501 | MS.gene04200:intron | 45.0% |
| ! | TTTTGAGCCATTTGAGGGAG+AGG | - | chr3.3:48269726-48269745 | MS.gene04200:intron | 45.0% |
| !! | CGTTTGACTTGCAGGATTCT+GGG | - | chr3.3:48269384-48269403 | MS.gene04200:CDS | 45.0% |
| !! | GCTTTGGAATCTCTTGTCCA+CGG | + | chr3.3:48269606-48269625 | None:intergenic | 45.0% |
| !!! | GCAAGATGGTTTTGGATGAC+TGG | - | chr3.3:48269114-48269133 | MS.gene04200:intron | 45.0% |
| !!! | ATTTTATTATTATTTCTTAT+AGG | - | chr3.3:48267080-48267099 | MS.gene04200:CDS | 5.0% |
| AACAGAATGCCCAACCAGGT+AGG | + | chr3.3:48268754-48268773 | None:intergenic | 50.0% | |
| ACGCTCTTTCTGAGCTTCGT+CGG | + | chr3.3:48269686-48269705 | None:intergenic | 50.0% | |
| ACTAAGTGGGGTCGAGTACA+TGG | + | chr3.3:48267620-48267639 | None:intergenic | 50.0% | |
| AGGATTCTTGGGTTTGGGCT+TGG | + | chr3.3:48269075-48269094 | None:intergenic | 50.0% | |
| ATGTACTCGACCCCACTTAG+TGG | - | chr3.3:48267619-48267638 | MS.gene04200:CDS | 50.0% | |
| CCTTGCTCACAATACCTACC+TGG | - | chr3.3:48268737-48268756 | MS.gene04200:intron | 50.0% | |
| CTGGGACATGTATGATCCAG+AGG | - | chr3.3:48269402-48269421 | MS.gene04200:intron | 50.0% | |
| CTTTGCTGCAGTTGCACGAT+TGG | - | chr3.3:48267688-48267707 | MS.gene04200:CDS | 50.0% | |
| GCTCACAATACCTACCTGGT+TGG | - | chr3.3:48268741-48268760 | MS.gene04200:intron | 50.0% | |
| GGATTCTTGGGTTTGGGCTT+GGG | + | chr3.3:48269074-48269093 | None:intergenic | 50.0% | |
| GGGGTCTTAGCAGATGGAAT+AGG | + | chr3.3:48268948-48268967 | None:intergenic | 50.0% | |
| GTGACACTGAACAAGGTTGG+TGG | - | chr3.3:48269481-48269500 | MS.gene04200:intron | 50.0% | |
| GTTGTGGGCTTGGATTCCTT+AGG | + | chr3.3:48268978-48268997 | None:intergenic | 50.0% | |
| TAGATCCTGCACGCTCAGAA+GGG | - | chr3.3:48266835-48266854 | MS.gene04200:CDS | 50.0% | |
| TGGATTCCTTAGGCTGGGTA+GGG | + | chr3.3:48268968-48268987 | None:intergenic | 50.0% | |
| TGTACTCGACCCCACTTAGT+GGG | - | chr3.3:48267620-48267639 | MS.gene04200:CDS | 50.0% | |
| TTCCGTGAGGTCGCAATCAA+AGG | - | chr3.3:48269167-48269186 | MS.gene04200:intron | 50.0% | |
| TTCGTCGGAGATGTCAACCT+TGG | + | chr3.3:48269671-48269690 | None:intergenic | 50.0% | |
| TTGGATTCCTTAGGCTGGGT+AGG | + | chr3.3:48268969-48268988 | None:intergenic | 50.0% | |
| ! | CCAGGTAGGTATTGTGAGCA+AGG | + | chr3.3:48268740-48268759 | None:intergenic | 50.0% |
| ! | CGTCTTTGAGAGCAATGCGA+TGG | - | chr3.3:48267131-48267150 | MS.gene04200:intron | 50.0% |
| ! | GGTAGGTATTGTGAGCAAGG+TGG | + | chr3.3:48268737-48268756 | None:intergenic | 50.0% |
| !! | CCGTTTGACTTGCAGGATTC+TGG | - | chr3.3:48269383-48269402 | MS.gene04200:CDS | 50.0% |
| !! | CTGGCTCGCAAGTATGCTTT+TGG | - | chr3.3:48269523-48269542 | MS.gene04200:intron | 50.0% |
| !! | GTAGGGAATTGAGTGTTGGG+CGG | - | chr3.3:48267248-48267267 | MS.gene04200:intron | 50.0% |
| AGCAATGCGATGGCTCGCTA+TGG | - | chr3.3:48267141-48267160 | MS.gene04200:intron | 55.0% | |
| CACCAAGACCAACTTCCGTG+AGG | - | chr3.3:48269154-48269173 | MS.gene04200:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr3.3:48267626-48267645 | MS.gene04200:CDS | 55.0% | |
| CTCTCAAAGACGGGACCATC+CGG | + | chr3.3:48267123-48267142 | None:intergenic | 55.0% | |
| GATTGCGACCTCACGGAAGT+TGG | + | chr3.3:48269165-48269184 | None:intergenic | 55.0% | |
| GGAGCTGTATGAGTGGACCA+AGG | - | chr3.3:48269651-48269670 | MS.gene04200:CDS | 55.0% | |
| GGATTCCTTAGGCTGGGTAG+GGG | + | chr3.3:48268967-48268986 | None:intergenic | 55.0% | |
| GGGCTTGGATTCCTTAGGCT+GGG | + | chr3.3:48268973-48268992 | None:intergenic | 55.0% | |
| GGGTAACAGAATGCCCAACC+AGG | + | chr3.3:48268758-48268777 | None:intergenic | 55.0% | |
| GTAGATCCTGCACGCTCAGA+AGG | - | chr3.3:48266834-48266853 | MS.gene04200:CDS | 55.0% | |
| TAAGACCCCTACCCAGCCTA+AGG | - | chr3.3:48268959-48268978 | MS.gene04200:intron | 55.0% | |
| TCTCAAAGACGGGACCATCC+GGG | + | chr3.3:48267122-48267141 | None:intergenic | 55.0% | |
| TGGGCTTGGATTCCTTAGGC+TGG | + | chr3.3:48268974-48268993 | None:intergenic | 55.0% | |
| TGGGTAGGGGTCTTAGCAGA+TGG | + | chr3.3:48268954-48268973 | None:intergenic | 55.0% | |
| TGTTTCCCTTCTGAGCGTGC+AGG | + | chr3.3:48266843-48266862 | None:intergenic | 55.0% | |
| ! | AAGGGGTTGTGGCTTTTCCG+TGG | - | chr3.3:48269586-48269605 | MS.gene04200:CDS | 55.0% |
| ! | GACCTCACGGAAGTTGGTCT+TGG | + | chr3.3:48269159-48269178 | None:intergenic | 55.0% |
| CCATCCGGGGTTTCCAAGAC+CGG | + | chr3.3:48267108-48267127 | None:intergenic | 60.0% | |
| CTCAAAGACGGGACCATCCG+GGG | + | chr3.3:48267121-48267140 | None:intergenic | 60.0% | |
| GGTTCCGGTCTTGGAAACCC+CGG | - | chr3.3:48267101-48267120 | MS.gene04200:intron | 60.0% | |
| CCGGTCTTGGAAACCCCGGA+TGG | - | chr3.3:48267105-48267124 | MS.gene04200:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48266740 | 48269777 | 48266740 | ID=MS.gene04200 |
| chr3.3 | mRNA | 48266740 | 48269777 | 48266740 | ID=MS.gene04200.t1;Parent=MS.gene04200 |
| chr3.3 | exon | 48269769 | 48269777 | 48269769 | ID=MS.gene04200.t1.exon1;Parent=MS.gene04200.t1 |
| chr3.3 | CDS | 48269769 | 48269777 | 48269769 | ID=cds.MS.gene04200.t1;Parent=MS.gene04200.t1 |
| chr3.3 | exon | 48269530 | 48269679 | 48269530 | ID=MS.gene04200.t1.exon2;Parent=MS.gene04200.t1 |
| chr3.3 | CDS | 48269530 | 48269679 | 48269530 | ID=cds.MS.gene04200.t1;Parent=MS.gene04200.t1 |
| chr3.3 | exon | 48269355 | 48269415 | 48269355 | ID=MS.gene04200.t1.exon3;Parent=MS.gene04200.t1 |
| chr3.3 | CDS | 48269355 | 48269415 | 48269355 | ID=cds.MS.gene04200.t1;Parent=MS.gene04200.t1 |
| chr3.3 | exon | 48268769 | 48268818 | 48268769 | ID=MS.gene04200.t1.exon4;Parent=MS.gene04200.t1 |
| chr3.3 | CDS | 48268769 | 48268818 | 48268769 | ID=cds.MS.gene04200.t1;Parent=MS.gene04200.t1 |
| chr3.3 | exon | 48268096 | 48268197 | 48268096 | ID=MS.gene04200.t1.exon5;Parent=MS.gene04200.t1 |
| chr3.3 | CDS | 48268096 | 48268197 | 48268096 | ID=cds.MS.gene04200.t1;Parent=MS.gene04200.t1 |
| chr3.3 | exon | 48267329 | 48267836 | 48267329 | ID=MS.gene04200.t1.exon6;Parent=MS.gene04200.t1 |
| chr3.3 | CDS | 48267329 | 48267836 | 48267329 | ID=cds.MS.gene04200.t1;Parent=MS.gene04200.t1 |
| chr3.3 | exon | 48266740 | 48267119 | 48266740 | ID=MS.gene04200.t1.exon7;Parent=MS.gene04200.t1 |
| chr3.3 | CDS | 48266740 | 48267119 | 48266740 | ID=cds.MS.gene04200.t1;Parent=MS.gene04200.t1 |
| Gene Sequence |
| Protein sequence |
