Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002305.t1 | XP_003593373.1 | 96 | 124 | 5 | 0 | 1 | 124 | 1 | 124 | 4.60E-60 | 240.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002305.t1 | Q8LDI5 | 67.9 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 1.1e-38 | 160.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002305.t1 | B7FIZ6 | 96.0 | 124 | 5 | 0 | 1 | 124 | 1 | 124 | 3.3e-60 | 240.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene014475 | MS.gene002305 | PPI |
MS.gene064706 | MS.gene002305 | PPI |
MS.gene043301 | MS.gene002305 | PPI |
MS.gene69451 | MS.gene002305 | PPI |
MS.gene27271 | MS.gene002305 | PPI |
MS.gene42302 | MS.gene002305 | PPI |
MS.gene79654 | MS.gene002305 | PPI |
MS.gene24227 | MS.gene002305 | PPI |
MS.gene74758 | MS.gene002305 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002305.t1 | MTR_2g010750 | 95.968 | 124 | 5 | 0 | 1 | 124 | 1 | 124 | 9.21e-86 | 245 |
MS.gene002305.t1 | MTR_4g081380 | 59.322 | 118 | 48 | 0 | 5 | 122 | 6 | 123 | 1.34e-50 | 157 |
MS.gene002305.t1 | MTR_2g082590 | 60.714 | 112 | 44 | 0 | 8 | 119 | 9 | 120 | 1.60e-49 | 154 |
MS.gene002305.t1 | MTR_2g010750 | 91.139 | 79 | 7 | 0 | 1 | 79 | 1 | 79 | 4.47e-49 | 152 |
MS.gene002305.t1 | MTR_2g082590 | 54.400 | 125 | 44 | 1 | 8 | 119 | 9 | 133 | 1.64e-45 | 144 |
MS.gene002305.t1 | MTR_4g081380 | 62.857 | 70 | 26 | 0 | 5 | 74 | 6 | 75 | 6.16e-28 | 98.6 |
MS.gene002305.t1 | MTR_1g023140 | 38.793 | 116 | 71 | 0 | 7 | 122 | 4 | 119 | 6.67e-27 | 96.7 |
MS.gene002305.t1 | MTR_8g005320 | 37.500 | 112 | 70 | 0 | 1 | 112 | 18 | 129 | 4.09e-26 | 95.5 |
MS.gene002305.t1 | MTR_3g112410 | 40.952 | 105 | 62 | 0 | 8 | 112 | 5 | 109 | 1.41e-25 | 93.2 |
MS.gene002305.t1 | MTR_8g006685 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 4.65e-25 | 94.7 |
MS.gene002305.t1 | MTR_8g006560 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 4.65e-25 | 94.7 |
MS.gene002305.t1 | MTR_7g073680 | 35.897 | 117 | 75 | 0 | 2 | 118 | 17 | 133 | 7.60e-25 | 92.0 |
MS.gene002305.t1 | MTR_5g021180 | 40.541 | 111 | 66 | 0 | 8 | 118 | 7 | 117 | 7.68e-25 | 91.7 |
MS.gene002305.t1 | MTR_7g009070 | 39.362 | 94 | 57 | 0 | 20 | 113 | 37 | 130 | 1.60e-24 | 91.3 |
MS.gene002305.t1 | MTR_5g037950 | 40.000 | 105 | 63 | 0 | 9 | 113 | 19 | 123 | 1.31e-18 | 75.9 |
MS.gene002305.t1 | MTR_8g107460 | 32.692 | 104 | 70 | 0 | 9 | 112 | 254 | 357 | 8.12e-18 | 77.8 |
MS.gene002305.t1 | MTR_5g037930 | 37.143 | 105 | 66 | 0 | 9 | 113 | 20 | 124 | 1.03e-16 | 70.9 |
MS.gene002305.t1 | MTR_5g037890 | 39.048 | 105 | 64 | 0 | 9 | 113 | 18 | 122 | 2.37e-16 | 70.1 |
MS.gene002305.t1 | MTR_1g098660 | 34.091 | 88 | 56 | 2 | 28 | 113 | 75 | 162 | 4.66e-14 | 65.1 |
MS.gene002305.t1 | MTR_4g088905 | 31.683 | 101 | 69 | 0 | 24 | 124 | 14 | 114 | 2.08e-13 | 65.9 |
MS.gene002305.t1 | MTR_8g059015 | 35.632 | 87 | 54 | 2 | 32 | 116 | 90 | 176 | 4.24e-12 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002305.t1 | AT1G11530 | 67.857 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 4.70e-53 | 162 |
MS.gene002305.t1 | AT3G51030 | 41.905 | 105 | 61 | 0 | 8 | 112 | 5 | 109 | 3.58e-27 | 97.4 |
MS.gene002305.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.27e-25 | 94.0 |
MS.gene002305.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.27e-25 | 94.0 |
MS.gene002305.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.24e-25 | 93.6 |
MS.gene002305.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.24e-25 | 93.6 |
MS.gene002305.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.24e-25 | 93.6 |
MS.gene002305.t1 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 1.60e-23 | 89.0 |
MS.gene002305.t1 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 1.60e-23 | 89.0 |
MS.gene002305.t1 | AT3G08710 | 34.746 | 118 | 77 | 0 | 1 | 118 | 15 | 132 | 1.60e-23 | 89.0 |
MS.gene002305.t1 | AT1G45145 | 35.849 | 106 | 68 | 0 | 7 | 112 | 3 | 108 | 2.03e-22 | 85.5 |
MS.gene002305.t1 | AT5G39950 | 36.111 | 108 | 69 | 0 | 5 | 112 | 21 | 128 | 2.28e-22 | 85.9 |
MS.gene002305.t1 | AT1G59730 | 38.835 | 103 | 63 | 0 | 11 | 113 | 23 | 125 | 4.13e-21 | 82.4 |
MS.gene002305.t1 | AT1G19730 | 40.426 | 94 | 55 | 1 | 20 | 112 | 17 | 110 | 5.48e-21 | 81.6 |
MS.gene002305.t1 | AT5G42980 | 34.906 | 106 | 69 | 0 | 8 | 113 | 4 | 109 | 1.51e-19 | 78.2 |
MS.gene002305.t1 | AT1G69880 | 29.464 | 112 | 79 | 0 | 7 | 118 | 35 | 146 | 4.02e-18 | 75.1 |
MS.gene002305.t1 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 261 | 366 | 6.29e-17 | 75.5 |
MS.gene002305.t1 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 268 | 373 | 7.37e-17 | 75.5 |
MS.gene002305.t1 | AT1G43560 | 34.066 | 91 | 58 | 2 | 29 | 117 | 74 | 164 | 1.42e-13 | 63.9 |
MS.gene002305.t1 | AT1G76760 | 33.333 | 87 | 56 | 2 | 29 | 113 | 79 | 165 | 2.32e-13 | 63.5 |
MS.gene002305.t1 | AT4G32580 | 32.143 | 84 | 57 | 0 | 29 | 112 | 19 | 102 | 2.40e-13 | 63.2 |
MS.gene002305.t1 | AT1G52990 | 30.208 | 96 | 66 | 1 | 22 | 116 | 218 | 313 | 4.26e-13 | 64.3 |
MS.gene002305.t1 | AT4G04950 | 34.146 | 82 | 54 | 0 | 31 | 112 | 21 | 102 | 4.32e-13 | 64.7 |
MS.gene002305.t1 | AT3G15360 | 36.047 | 86 | 53 | 2 | 33 | 116 | 106 | 191 | 7.51e-13 | 62.4 |
MS.gene002305.t1 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 2.40e-12 | 61.2 |
MS.gene002305.t1 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 2.40e-12 | 61.2 |
MS.gene002305.t1 | AT1G31020 | 29.730 | 111 | 76 | 1 | 5 | 113 | 45 | 155 | 4.56e-12 | 59.7 |
MS.gene002305.t1 | AT3G53220 | 25.893 | 112 | 81 | 1 | 1 | 112 | 13 | 122 | 6.42e-12 | 58.5 |
Find 22 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTCACTTTACTGCTTCA+TGG | 0.264633 | 2.3:+72687859 | MS.gene002305:CDS |
CATTGCCTTTATATCATTCC+TGG | 0.272354 | 2.3:-72689368 | None:intergenic |
ACAGAGAGAAACAGAAAATC+TGG | 0.372687 | 2.3:-72687936 | None:intergenic |
GAGAATTCTGATTAGAAGCT+TGG | 0.402282 | 2.3:-72687731 | None:intergenic |
GGAGATTAAGAAAAGGATAG+AGG | 0.410843 | 2.3:+72689453 | MS.gene002305:CDS |
GGCCACCAGGAATGATATAA+AGG | 0.411501 | 2.3:+72689363 | MS.gene002305:CDS |
TGATTGATTCTTTGCAATCA+TGG | 0.469609 | 2.3:+72687694 | MS.gene002305:CDS |
CGGTTCAGGAGGTGGCCACC+AGG | 0.479869 | 2.3:+72689350 | MS.gene002305:intron |
GAGATTAAGAAAAGGATAGA+GGG | 0.496178 | 2.3:+72689454 | MS.gene002305:CDS |
GCTGAAGGATGGTGCTCCAT+TGG | 0.519133 | 2.3:+72689405 | MS.gene002305:CDS |
AGAATCAATCACCACTACCT+TGG | 0.527546 | 2.3:-72687682 | None:intergenic |
GCAAAACAAGTCCAAGGTAG+TGG | 0.548033 | 2.3:+72687671 | MS.gene002305:CDS |
GATTGATTCTTTGCAATCAT+GGG | 0.549324 | 2.3:+72687695 | MS.gene002305:CDS |
ATCCAGAGGAGATTAAGAAA+AGG | 0.550537 | 2.3:+72689446 | MS.gene002305:CDS |
TGCCTTTATATCATTCCTGG+TGG | 0.582723 | 2.3:-72689365 | None:intergenic |
AATGGAATCATAGCCACTGA+TGG | 0.585805 | 2.3:-72687888 | None:intergenic |
GCACCAACTATCTTGTCCAA+TGG | 0.587312 | 2.3:-72689421 | None:intergenic |
TTCATGGTGCATGCCATCAG+TGG | 0.591969 | 2.3:+72687875 | MS.gene002305:CDS |
GCTCCATTGGACAAGATAGT+TGG | 0.601256 | 2.3:+72689418 | MS.gene002305:CDS |
CATAGAGCAAAACAAGTCCA+AGG | 0.613866 | 2.3:+72687665 | MS.gene002305:CDS |
TGTTGATGTTGATGAAGTCA+AGG | 0.653275 | 2.3:+72687956 | MS.gene002305:CDS |
GATAGTTGGTGCTAATCCAG+AGG | 0.694394 | 2.3:+72689432 | MS.gene002305:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATGTATTGAATTTTTTTTT+GGG | + | chr2.3:72689327-72689346 | MS.gene002305:intron | 10.0% |
!!! | TAATGTATTGAATTTTTTTT+TGG | + | chr2.3:72689326-72689345 | MS.gene002305:intron | 10.0% |
!! | AAAATAAAAACAGCATTATC+TGG | + | chr2.3:72688558-72688577 | MS.gene002305:intron | 20.0% |
!! | GACTGTTTATAAAGAATTAA+AGG | - | chr2.3:72687797-72687816 | None:intergenic | 20.0% |
!! | GGAATATTTAAAAACAAAGA+TGG | - | chr2.3:72688506-72688525 | None:intergenic | 20.0% |
!!! | ATTATATGACTGAATTTTGT+TGG | - | chr2.3:72688339-72688358 | None:intergenic | 20.0% |
!!! | TAATGCTGTTTTTATTTTGA+AGG | - | chr2.3:72688556-72688575 | None:intergenic | 20.0% |
! | ATGATATATGAGAACATCAT+TGG | + | chr2.3:72688168-72688187 | MS.gene002305:intron | 25.0% |
! | GGATTTGAATATCTTATATC+TGG | + | chr2.3:72688770-72688789 | MS.gene002305:intron | 25.0% |
! | TACAAGAATTGAAAACAGAT+GGG | - | chr2.3:72687994-72688013 | None:intergenic | 25.0% |
! | TATCTATATCCAACAGTAAA+AGG | - | chr2.3:72688202-72688221 | None:intergenic | 25.0% |
! | TATGCTATATGAGAACATTA+TGG | + | chr2.3:72688220-72688239 | MS.gene002305:intron | 25.0% |
! | TCATATCTATATCCACAAAA+AGG | - | chr2.3:72688152-72688171 | None:intergenic | 25.0% |
! | TGATGTGTTTAGATATGTAA+TGG | - | chr2.3:72688077-72688096 | None:intergenic | 25.0% |
!! | ATATCTTATATCTGGCTTAA+AGG | + | chr2.3:72688778-72688797 | MS.gene002305:intron | 25.0% |
!! | TATCTTATATCTGGCTTAAA+GGG | + | chr2.3:72688779-72688798 | MS.gene002305:intron | 25.0% |
!!! | CGTTTTAGAATACAAGTTAT+AGG | - | chr2.3:72689131-72689150 | None:intergenic | 25.0% |
!!! | GTATTGAATTTTTTTTTGGG+CGG | + | chr2.3:72689330-72689349 | MS.gene002305:intron | 25.0% |
AAAAACAGCATTATCTGGTT+TGG | + | chr2.3:72688563-72688582 | MS.gene002305:intron | 30.0% | |
AATTACTTGGTTGACATTTC+AGG | + | chr2.3:72688914-72688933 | MS.gene002305:intron | 30.0% | |
AGTTTCTATTGCATAGTGTT+TGG | + | chr2.3:72688367-72688386 | MS.gene002305:intron | 30.0% | |
ATGGAAATCCGAAATCATTA+CGG | + | chr2.3:72688390-72688409 | MS.gene002305:intron | 30.0% | |
ATGGTATCAGTACAGAATTT+AGG | - | chr2.3:72688606-72688625 | None:intergenic | 30.0% | |
ATTCTCTACAAATATAACCC+GGG | + | chr2.3:72688739-72688758 | MS.gene002305:intron | 30.0% | |
CTACAAGAATTGAAAACAGA+TGG | - | chr2.3:72687995-72688014 | None:intergenic | 30.0% | |
GAGATTAAGAAAAGGATAGA+GGG | + | chr2.3:72689454-72689473 | MS.gene002305:CDS | 30.0% | |
GATATGTAATGGTACTAACT+AGG | - | chr2.3:72688066-72688085 | None:intergenic | 30.0% | |
GATTCTCTACAAATATAACC+CGG | + | chr2.3:72688738-72688757 | MS.gene002305:intron | 30.0% | |
TCGAGTCAAAATCAATAGTA+CGG | - | chr2.3:72688854-72688873 | None:intergenic | 30.0% | |
TGGTATCAGTACAGAATTTA+GGG | - | chr2.3:72688605-72688624 | None:intergenic | 30.0% | |
TTGTAGAGAATCAATTTCAG+TGG | - | chr2.3:72688730-72688749 | None:intergenic | 30.0% | |
TTTGAATTGAAGTCAACAGA+TGG | + | chr2.3:72688995-72689014 | MS.gene002305:intron | 30.0% | |
! | ACATTGAAACTTTGACTTAC+AGG | - | chr2.3:72687756-72687775 | None:intergenic | 30.0% |
! | ATCTTATATCTGGCTTAAAG+GGG | + | chr2.3:72688780-72688799 | MS.gene002305:intron | 30.0% |
! | GAATCAAAACCTTTTACTGT+TGG | + | chr2.3:72688190-72688209 | MS.gene002305:intron | 30.0% |
! | GATTGATTCTTTGCAATCAT+GGG | + | chr2.3:72687695-72687714 | MS.gene002305:CDS | 30.0% |
! | TGATTGATTCTTTGCAATCA+TGG | + | chr2.3:72687694-72687713 | MS.gene002305:CDS | 30.0% |
! | TGGAAATCAAAACCTTTTTG+TGG | + | chr2.3:72688137-72688156 | MS.gene002305:intron | 30.0% |
!!! | TTACGGTGATTAGGTTTTTT+TGG | + | chr2.3:72688407-72688426 | MS.gene002305:intron | 30.0% |
AAAGAACGGATGGAATTACT+TGG | + | chr2.3:72688901-72688920 | MS.gene002305:intron | 35.0% | |
AAGTAATTCCATCCGTTCTT+TGG | - | chr2.3:72688902-72688921 | None:intergenic | 35.0% | |
AATGCTCAGAAACAGATTGT+TGG | + | chr2.3:72689033-72689052 | MS.gene002305:intron | 35.0% | |
ACAGAGAGAAACAGAAAATC+TGG | - | chr2.3:72687939-72687958 | None:intergenic | 35.0% | |
ACTGAGTCTATTGCATAACA+TGG | - | chr2.3:72688697-72688716 | None:intergenic | 35.0% | |
ACTTGGGATACTGTTCTTTA+TGG | - | chr2.3:72688625-72688644 | None:intergenic | 35.0% | |
ATCCAGAGGAGATTAAGAAA+AGG | + | chr2.3:72689446-72689465 | MS.gene002305:CDS | 35.0% | |
CAGTTGCAACTTGTAGTAAA+AGG | - | chr2.3:72688311-72688330 | None:intergenic | 35.0% | |
CATTGCCTTTATATCATTCC+TGG | - | chr2.3:72689371-72689390 | None:intergenic | 35.0% | |
CCTAATCACCGTAATGATTT+CGG | - | chr2.3:72688401-72688420 | None:intergenic | 35.0% | |
GAGAATTCTGATTAGAAGCT+TGG | - | chr2.3:72687734-72687753 | None:intergenic | 35.0% | |
GGAGATTAAGAAAAGGATAG+AGG | + | chr2.3:72689453-72689472 | MS.gene002305:CDS | 35.0% | |
TAACTTATGATACGTCTTGC+AGG | + | chr2.3:72688809-72688828 | MS.gene002305:intron | 35.0% | |
TCCTTCAGCAACAAAAATGT+TGG | - | chr2.3:72689394-72689413 | None:intergenic | 35.0% | |
TCTATTGCATAGTGTTTGGA+TGG | + | chr2.3:72688371-72688390 | MS.gene002305:intron | 35.0% | |
TGCAGGTACAAAAAACCAAT+GGG | + | chr2.3:72688826-72688845 | MS.gene002305:intron | 35.0% | |
TTCAAGCTCCAATTTCCAAT+TGG | - | chr2.3:72688471-72688490 | None:intergenic | 35.0% | |
TTCTACGCGCATAACTAATA+TGG | + | chr2.3:72689160-72689179 | MS.gene002305:intron | 35.0% | |
TTGCAGGTACAAAAAACCAA+TGG | + | chr2.3:72688825-72688844 | MS.gene002305:intron | 35.0% | |
TTGGAGAGAATCTGATTGTA+TGG | + | chr2.3:72688426-72688445 | MS.gene002305:intron | 35.0% | |
TTGTTCACTTTACTGCTTCA+TGG | + | chr2.3:72687859-72687878 | MS.gene002305:CDS | 35.0% | |
! | ACATTTTTGTTGCTGAAGGA+TGG | + | chr2.3:72689394-72689413 | MS.gene002305:CDS | 35.0% |
! | ATCCTTTTCTTAATCTCCTC+TGG | - | chr2.3:72689451-72689470 | None:intergenic | 35.0% |
! | TCTCATTGATCATGTCACTT+GGG | - | chr2.3:72688641-72688660 | None:intergenic | 35.0% |
! | TGTTGATGTTGATGAAGTCA+AGG | + | chr2.3:72687956-72687975 | MS.gene002305:CDS | 35.0% |
! | TTATGGTGCCAATTGGAAAT+TGG | + | chr2.3:72688460-72688479 | MS.gene002305:intron | 35.0% |
!! | ACAATCTGTTTCTGAGCATT+AGG | - | chr2.3:72689033-72689052 | None:intergenic | 35.0% |
!! | CAATCTGTTTCTGAGCATTA+GGG | - | chr2.3:72689032-72689051 | None:intergenic | 35.0% |
!! | CAGTCTTCAAATTGATTTGC+TGG | + | chr2.3:72687812-72687831 | MS.gene002305:intron | 35.0% |
!! | TTGGAGCTTGAATTTTAGAG+AGG | + | chr2.3:72688479-72688498 | MS.gene002305:intron | 35.0% |
!!! | AATTTTTTTTTGGGCGGTTC+AGG | + | chr2.3:72689336-72689355 | MS.gene002305:intron | 35.0% |
!!! | TTCCTGTGTTATTTTCATGC+CGG | + | chr2.3:72689231-72689250 | MS.gene002305:intron | 35.0% |
AAAGGAAGAGCTGAATTCAC+AGG | - | chr2.3:72689066-72689085 | None:intergenic | 40.0% | |
AATGGAATCATAGCCACTGA+TGG | - | chr2.3:72687891-72687910 | None:intergenic | 40.0% | |
AATTCCATCCGTTCTTTGGA+TGG | - | chr2.3:72688898-72688917 | None:intergenic | 40.0% | |
AGAATCAATCACCACTACCT+TGG | - | chr2.3:72687685-72687704 | None:intergenic | 40.0% | |
AGAATCTGATTGTATGGCGA+AGG | + | chr2.3:72688432-72688451 | MS.gene002305:intron | 40.0% | |
ATCAATAGTACGGTTCCCAT+TGG | - | chr2.3:72688844-72688863 | None:intergenic | 40.0% | |
ATTCAAATCCATCATCCTCC+CGG | - | chr2.3:72688760-72688779 | None:intergenic | 40.0% | |
ATTCCTCACGAGCAACTAAA+TGG | + | chr2.3:72688521-72688540 | MS.gene002305:intron | 40.0% | |
CATAGAGCAAAACAAGTCCA+AGG | + | chr2.3:72687665-72687684 | MS.gene002305:CDS | 40.0% | |
CCGAAATCATTACGGTGATT+AGG | + | chr2.3:72688398-72688417 | MS.gene002305:intron | 40.0% | |
CTCTCATTGATCATGTCACT+TGG | - | chr2.3:72688642-72688661 | None:intergenic | 40.0% | |
CTCTGATACCATCCAAAGAA+CGG | + | chr2.3:72688887-72688906 | MS.gene002305:intron | 40.0% | |
CTGTCAACTTTCTGTTTGAG+TGG | + | chr2.3:72688117-72688136 | MS.gene002305:intron | 40.0% | |
GACGCGAATTCTTCGAAAAA+TGG | - | chr2.3:72687909-72687928 | None:intergenic | 40.0% | |
TGCAATAGACTCAGTCTTTG+CGG | + | chr2.3:72688702-72688721 | MS.gene002305:intron | 40.0% | |
TGCCTTTATATCATTCCTGG+TGG | - | chr2.3:72689368-72689387 | None:intergenic | 40.0% | |
TTAGTTATGCGCGTAGAACA+CGG | - | chr2.3:72689158-72689177 | None:intergenic | 40.0% | |
TTGACACGAGAGACGATAAA+AGG | - | chr2.3:72689084-72689103 | None:intergenic | 40.0% | |
! | GCCAACATTTTTGTTGCTGA+AGG | + | chr2.3:72689390-72689409 | MS.gene002305:CDS | 40.0% |
!!! | CTTGGACTTGTTTTGCTCTA+TGG | - | chr2.3:72687667-72687686 | None:intergenic | 40.0% |
AATATAACCCGGGAGGATGA+TGG | + | chr2.3:72688749-72688768 | MS.gene002305:intron | 45.0% | |
CAACCATTTAGTTGCTCGTG+AGG | - | chr2.3:72688527-72688546 | None:intergenic | 45.0% | |
CTCCGGCATGAAAATAACAC+AGG | - | chr2.3:72689236-72689255 | None:intergenic | 45.0% | |
CTCTACAAATATAACCCGGG+AGG | + | chr2.3:72688742-72688761 | MS.gene002305:intron | 45.0% | |
GATACCATCCAAAGAACGGA+TGG | + | chr2.3:72688891-72688910 | MS.gene002305:intron | 45.0% | |
GCAAAACAAGTCCAAGGTAG+TGG | + | chr2.3:72687671-72687690 | MS.gene002305:CDS | 45.0% | |
GCACCAACTATCTTGTCCAA+TGG | - | chr2.3:72689424-72689443 | None:intergenic | 45.0% | |
GCTCCATTGGACAAGATAGT+TGG | + | chr2.3:72689418-72689437 | MS.gene002305:CDS | 45.0% | |
GGCCACCAGGAATGATATAA+AGG | + | chr2.3:72689363-72689382 | MS.gene002305:CDS | 45.0% | |
TTCAAATCCATCATCCTCCC+GGG | - | chr2.3:72688759-72688778 | None:intergenic | 45.0% | |
! | AAGTCTTGTCCCACTAAGTG+TGG | - | chr2.3:72688269-72688288 | None:intergenic | 45.0% |
!! | GATAGTTGGTGCTAATCCAG+AGG | + | chr2.3:72689432-72689451 | MS.gene002305:CDS | 45.0% |
!!! | CTGTGTTATTTTCATGCCGG+AGG | + | chr2.3:72689234-72689253 | MS.gene002305:intron | 45.0% |
!!! | TTTTTTTTGGGCGGTTCAGG+AGG | + | chr2.3:72689339-72689358 | MS.gene002305:intron | 45.0% |
ATGTAGCCCACCACACTTAG+TGG | + | chr2.3:72688256-72688275 | MS.gene002305:intron | 50.0% | |
CTTGTCCCACTAAGTGTGGT+GGG | - | chr2.3:72688265-72688284 | None:intergenic | 50.0% | |
TCTTGTCCCACTAAGTGTGG+TGG | - | chr2.3:72688266-72688285 | None:intergenic | 50.0% | |
TGTAGCCCACCACACTTAGT+GGG | + | chr2.3:72688257-72688276 | MS.gene002305:intron | 50.0% | |
TTCATGGTGCATGCCATCAG+TGG | + | chr2.3:72687875-72687894 | MS.gene002305:CDS | 50.0% | |
! | CTTTTCTGTCTCAGTGCCTC+CGG | - | chr2.3:72689253-72689272 | None:intergenic | 50.0% |
! | GGCTTGCTTATGGTGCCAAT+TGG | + | chr2.3:72688453-72688472 | MS.gene002305:intron | 50.0% |
! | GTATGGCGAAGGCTTGCTTA+TGG | + | chr2.3:72688443-72688462 | MS.gene002305:intron | 50.0% |
GCTGAAGGATGGTGCTCCAT+TGG | + | chr2.3:72689405-72689424 | MS.gene002305:CDS | 55.0% | |
!! | TTTTTGGGCGGTTCAGGAGG+TGG | + | chr2.3:72689342-72689361 | MS.gene002305:intron | 55.0% |
CGGTTCAGGAGGTGGCCACC+AGG | + | chr2.3:72689350-72689369 | MS.gene002305:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 72687657 | 72689510 | 72687657 | ID=MS.gene002305 |
chr2.3 | mRNA | 72687657 | 72689510 | 72687657 | ID=MS.gene002305.t1;Parent=MS.gene002305 |
chr2.3 | exon | 72687657 | 72687755 | 72687657 | ID=MS.gene002305.t1.exon1;Parent=MS.gene002305.t1 |
chr2.3 | CDS | 72687657 | 72687755 | 72687657 | ID=cds.MS.gene002305.t1;Parent=MS.gene002305.t1 |
chr2.3 | exon | 72687855 | 72687977 | 72687855 | ID=MS.gene002305.t1.exon2;Parent=MS.gene002305.t1 |
chr2.3 | CDS | 72687855 | 72687977 | 72687855 | ID=cds.MS.gene002305.t1;Parent=MS.gene002305.t1 |
chr2.3 | exon | 72689358 | 72689510 | 72689358 | ID=MS.gene002305.t1.exon3;Parent=MS.gene002305.t1 |
chr2.3 | CDS | 72689358 | 72689510 | 72689358 | ID=cds.MS.gene002305.t1;Parent=MS.gene002305.t1 |
Gene Sequence |
Protein sequence |