AlfalfaGEDB | MS.gene24227

M. sativa cultivar XinJiangDaYe / MS.gene24227

KEGG: K03671
GO: GO:0003674 GO:0003824 GO:0006662 GO:0008150 GO:0008152 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0018904 GO:0019725 GO:0042592 GO:0044281 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704
PFAM: PF00085.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24227.t1	AUS45886.1	98.3	117	2	0	2	118	3	119	6.00E-57	229.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24227.t1	Q43636	72.6	117	31	1	2	118	3	118	5.0e-44	178.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24227.t1	A0A2I7VTB4	98.3	117	2	0	2	118	3	119	4.3e-57	229.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene24227	0.816671	4.90E-52	-1.69E-46
MS.gene04917	MS.gene24227	0.810793	9.66E-51	-1.69E-46
MS.gene049758	MS.gene24227	0.806442	8.21E-50	-1.69E-46
MS.gene050762	MS.gene24227	0.849898	2.41E-60	-1.69E-46
MS.gene050763	MS.gene24227	0.851607	7.95E-61	-1.69E-46
MS.gene051245	MS.gene24227	0.808341	3.25E-50	-1.69E-46
MS.gene054379	MS.gene24227	0.832922	7.17E-56	-1.69E-46
MS.gene056752	MS.gene24227	0.800186	1.62E-48	-1.69E-46
MS.gene057451	MS.gene24227	-0.832328	1.01E-55	-1.69E-46
MS.gene057452	MS.gene24227	-0.83322	6.04E-56	-1.69E-46
MS.gene058182	MS.gene24227	0.819901	9.10E-53	-1.69E-46
MS.gene060084	MS.gene24227	0.85649	3.11E-62	-1.69E-46
MS.gene060869	MS.gene24227	0.80975	1.62E-50	-1.69E-46
MS.gene060940	MS.gene24227	0.821792	3.34E-53	-1.69E-46
MS.gene060943	MS.gene24227	0.810806	9.60E-51	-1.69E-46
MS.gene061002	MS.gene24227	0.812599	3.91E-51	-1.69E-46
MS.gene061004	MS.gene24227	0.800075	1.71E-48	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene01696	MS.gene24227	PPI
MS.gene031529	MS.gene24227	PPI
MS.gene69799	MS.gene24227	PPI
MS.gene56558	MS.gene24227	PPI
MS.gene24227	MS.gene01283	PPI
MS.gene24227	MS.gene02264	PPI
MS.gene006767	MS.gene24227	PPI
MS.gene24227	MS.gene96813	PPI
MS.gene24227	MS.gene002305	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24227.t1	MTR_1g023140	97.436	117	3	0	2	118	3	119	5.67e-79	228
MS.gene24227.t1	MTR_3g112410	81.818	110	20	0	2	111	3	112	4.25e-63	188
MS.gene24227.t1	MTR_5g021180	68.519	108	34	0	4	111	7	114	1.67e-53	164
MS.gene24227.t1	MTR_7g009070	51.961	102	49	0	11	112	32	133	7.88e-38	124
MS.gene24227.t1	MTR_8g107460	50.926	108	53	0	4	111	253	360	1.93e-34	122
MS.gene24227.t1	MTR_8g005320	40.566	106	63	0	3	108	24	129	1.42e-32	111
MS.gene24227.t1	MTR_8g006685	40.566	106	63	0	3	108	93	198	4.44e-32	112
MS.gene24227.t1	MTR_8g006560	40.566	106	63	0	3	108	93	198	4.44e-32	112
MS.gene24227.t1	MTR_7g073680	39.286	112	68	0	3	114	22	133	4.98e-30	105
MS.gene24227.t1	MTR_5g037930	45.872	109	59	0	5	113	20	128	2.69e-29	102
MS.gene24227.t1	MTR_5g037950	46.226	106	57	0	7	112	21	126	1.73e-27	98.2
MS.gene24227.t1	MTR_2g010750	39.130	115	70	0	4	118	8	122	1.81e-26	95.5
MS.gene24227.t1	MTR_3g112400	52.475	101	28	3	1	101	1	81	1.82e-26	94.4
MS.gene24227.t1	MTR_5g037890	43.119	109	62	0	5	113	18	126	6.47e-26	94.4
MS.gene24227.t1	MTR_2g082590	34.821	112	73	0	4	115	9	120	7.06e-22	84.0
MS.gene24227.t1	MTR_4g094690	38.298	94	56	1	8	99	62	155	5.50e-21	82.8
MS.gene24227.t1	MTR_4g081380	36.275	102	65	0	4	105	9	110	2.10e-20	80.1
MS.gene24227.t1	MTR_2g082590	40.230	87	52	0	29	115	47	133	4.57e-19	77.0
MS.gene24227.t1	MTR_1g098660	40.789	76	44	1	25	99	76	151	9.13e-19	77.0
MS.gene24227.t1	MTR_3g089065	36.697	109	64	3	8	114	70	175	6.69e-18	75.1
MS.gene24227.t1	MTR_6g092700	31.034	116	75	3	5	117	75	188	1.26e-16	72.4
MS.gene24227.t1	MTR_7g080250	39.048	105	60	2	5	108	75	176	1.84e-16	71.6
MS.gene24227.t1	MTR_2g079420	40.789	76	44	1	25	99	84	159	5.59e-15	67.4
MS.gene24227.t1	MTR_7g102130	33.721	86	55	1	26	111	44	127	7.38e-15	66.2
MS.gene24227.t1	MTR_8g059015	37.500	88	53	2	25	110	87	174	3.36e-14	65.5
MS.gene24227.t1	MTR_3g435370	29.204	113	75	3	4	113	86	196	3.94e-14	66.6
MS.gene24227.t1	MTR_3g435370	29.204	113	75	3	4	113	86	196	5.19e-14	66.2
MS.gene24227.t1	MTR_1g114290	37.895	95	47	4	26	114	85	173	5.49e-14	65.1
MS.gene24227.t1	MTR_2g010750	34.286	70	46	0	4	73	8	77	6.83e-13	60.1
MS.gene24227.t1	MTR_4g088905	32.075	106	68	1	5	110	3	104	2.42e-12	62.4
MS.gene24227.t1	MTR_2g079340	35.135	74	47	1	26	98	51	124	4.95e-12	59.3
MS.gene24227.t1	MTR_4g085880	33.696	92	53	3	16	104	73	159	6.07e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24227.t1	AT3G51030	69.444	108	33	0	4	111	5	112	1.97e-56	171
MS.gene24227.t1	AT1G45145	59.459	111	45	0	1	111	1	111	1.10e-48	151
MS.gene24227.t1	AT5G42980	58.974	117	48	0	1	117	1	117	1.56e-47	149
MS.gene24227.t1	AT1G19730	58.120	117	48	1	2	117	3	119	7.88e-44	139
MS.gene24227.t1	AT3G17880	42.593	108	62	0	4	111	262	369	4.97e-32	115
MS.gene24227.t1	AT3G17880	42.593	108	62	0	4	111	269	376	6.12e-32	115
MS.gene24227.t1	AT5G39950	43.925	107	60	0	6	112	26	132	7.98e-32	109
MS.gene24227.t1	AT3G56420	42.308	104	60	0	2	105	37	140	1.30e-30	107
MS.gene24227.t1	AT3G56420	42.308	104	60	0	2	105	37	140	1.30e-30	107
MS.gene24227.t1	AT3G56420	42.308	104	60	0	2	105	37	140	1.30e-30	107
MS.gene24227.t1	AT3G08710	38.182	110	68	0	5	114	23	132	2.44e-29	103
MS.gene24227.t1	AT3G08710	38.182	110	68	0	5	114	23	132	2.44e-29	103
MS.gene24227.t1	AT3G08710	38.182	110	68	0	5	114	23	132	2.44e-29	103
MS.gene24227.t1	AT1G59730	40.179	112	67	0	1	112	17	128	2.54e-29	103
MS.gene24227.t1	AT1G69880	38.889	108	66	0	7	114	39	146	1.43e-27	99.4
MS.gene24227.t1	AT2G40790	41.176	102	60	0	4	105	39	140	2.61e-26	96.3
MS.gene24227.t1	AT2G40790	41.176	102	60	0	4	105	39	140	2.61e-26	96.3
MS.gene24227.t1	AT1G11530	40.594	101	60	0	5	105	2	102	1.43e-23	88.2
MS.gene24227.t1	AT2G35010	37.615	109	66	1	2	108	81	189	4.66e-21	83.6
MS.gene24227.t1	AT2G35010	37.615	109	66	1	2	108	81	189	4.66e-21	83.6
MS.gene24227.t1	AT1G43560	37.778	90	50	2	25	108	74	163	5.31e-18	75.1
MS.gene24227.t1	AT1G76760	39.474	76	45	1	25	99	79	154	1.65e-17	73.9
MS.gene24227.t1	AT4G26160	33.628	113	70	3	3	112	91	201	2.54e-17	74.7
MS.gene24227.t1	AT5G16400	41.463	82	47	1	28	108	98	179	1.37e-16	72.0
MS.gene24227.t1	AT3G02730	38.636	88	53	1	28	114	88	175	3.93e-16	70.5
MS.gene24227.t1	AT1G31020	38.372	86	51	1	15	98	59	144	3.98e-16	70.1
MS.gene24227.t1	AT1G03680	30.973	113	71	4	3	111	69	178	1.41e-13	63.9
MS.gene24227.t1	AT3G15360	36.145	83	51	2	30	110	107	189	1.92e-13	63.9
MS.gene24227.t1	AT4G32580	32.979	94	63	0	17	110	11	104	2.38e-13	62.8
MS.gene24227.t1	AT4G29670	27.273	110	75	3	6	112	104	211	1.73e-12	62.0
MS.gene24227.t1	AT4G29670	28.916	83	57	1	6	88	104	184	2.75e-12	61.2
MS.gene24227.t1	AT4G03520	33.735	83	53	2	30	110	101	183	3.58e-12	60.5
MS.gene24227.t1	AT3G53220	31.395	86	57	1	26	111	42	125	4.28e-12	58.9
MS.gene24227.t1	AT1G50320	34.831	89	51	3	25	112	85	167	4.33e-12	60.1
MS.gene24227.t1	AT4G04950	32.979	94	63	0	17	110	11	104	5.09e-12	61.6
MS.gene24227.t1	AT2G33270	38.462	65	40	0	24	88	110	174	2.17e-11	59.3

Find 31 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAGCAATCTCAGCTAGAAT+TGG	0.355652	1.2:-1810654	None:intergenic
AGAAGGTAAGGAAGTGGATA+AGG	0.412033	1.2:+1811111	MS.gene24227:CDS
CTTATTCTTGAAAGAAGGTA+AGG	0.442943	1.2:+1811099	MS.gene24227:CDS
ACCTTCTTATTCTTGAAAGA+AGG	0.451509	1.2:+1811094	MS.gene24227:CDS
ACCTTGAGGAAGATGACTTC+AGG	0.460006	1.2:-1810684	None:intergenic
AAATGCAATCACCAAGCATA+AGG	0.465102	1.2:+1811162	MS.gene24227:CDS
TAAGGTAGTTGGTGCTAGGA+AGG	0.479587	1.2:+1811129	MS.gene24227:CDS
TGGATAAGGTAGTTGGTGCT+AGG	0.488936	1.2:+1811125	MS.gene24227:CDS
AAGGAAGTGGATAAGGTAGT+TGG	0.491604	1.2:+1811118	MS.gene24227:CDS
AACAGTTGCATCCTTATGCT+TGG	0.492616	1.2:-1811173	None:intergenic
ACCTTCTTTCAAGAATAAGA+AGG	0.495256	1.2:-1811095	None:intergenic
TTCAGAGTGTTGCTGAGGAA+TGG	0.506641	1.2:+1811053	MS.gene24227:intron
GGTGGATATTGATGAAGTAA+AGG	0.509236	1.2:+1810704	MS.gene24227:CDS
CTAGAATTGGAGCAATAAAA+CGG	0.524722	1.2:-1810641	None:intergenic
CTTGAAAGAAGGTAAGGAAG+TGG	0.537499	1.2:+1811105	MS.gene24227:CDS
TGGTGCTAGGAAGGAAGAGC+TGG	0.539272	1.2:+1811138	MS.gene24227:CDS
TCTTTCAAGAATAAGAAGGT+TGG	0.555397	1.2:-1811091	None:intergenic
CTCCTCCTTCCACTGTTCAA+CGG	0.563671	1.2:-1809027	None:intergenic
ACCTGAAGTCATCTTCCTCA+AGG	0.580195	1.2:+1810683	MS.gene24227:CDS
GCAGCTGAAGGACAGGTGAT+CGG	0.598988	1.2:+1808996	MS.gene24227:CDS
GTGGAAGGAGGAGATCCAGA+AGG	0.606920	1.2:+1809037	MS.gene24227:CDS
TGGAAGGAGGAGATCCAGAA+GGG	0.610530	1.2:+1809038	MS.gene24227:CDS
AATAATATAATAGATTGTGG+TGG	0.611417	1.2:+1810590	MS.gene24227:intron
TGCTGAGGAATGGTCTGTTG+AGG	0.618156	1.2:+1811063	MS.gene24227:CDS
CTTCATCAATATCCACCTTG+AGG	0.619089	1.2:-1810698	None:intergenic
TCATACCGTTGAACAGTGGA+AGG	0.620633	1.2:+1809022	MS.gene24227:CDS
ATTGGAGCAATAAAACGGCA+TGG	0.627618	1.2:-1810636	None:intergenic
CCTATTTCAGAGTGTTGCTG+AGG	0.630806	1.2:+1811048	MS.gene24227:intron
TACCGTTGAACAGTGGAAGG+AGG	0.648899	1.2:+1809025	MS.gene24227:CDS
TGAAGTCATCTTCCTCAAGG+TGG	0.658466	1.2:+1810686	MS.gene24227:CDS
GTGTTCATACCGTTGAACAG+TGG	0.666984	1.2:+1809018	MS.gene24227:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAATAAACTCTAAACAA+GGG	+	chr1.2:1810122-1810141	MS.gene24227:intron	15.0%
!!	TTAAATTAAGCATTTAATGT+AGG	-	chr1.2:1810175-1810194	None:intergenic	15.0%
!!	TTGAATAATATAATAGATTG+TGG	+	chr1.2:1810587-1810606	MS.gene24227:intron	15.0%
!!!	ACAATTTTGTTTTTCATTAT+TGG	-	chr1.2:1809661-1809680	None:intergenic	15.0%
!!!	ATGTATATTTTAGTGTATTT+GGG	+	chr1.2:1809326-1809345	MS.gene24227:intron	15.0%
!!!	ATGTTTCTAATATTTTAAGA+TGG	+	chr1.2:1810960-1810979	MS.gene24227:intron	15.0%
!!	AATAATAACATTGAAAGGTA+CGG	-	chr1.2:1810283-1810302	None:intergenic	20.0%
!!	AATAATATAATAGATTGTGG+TGG	+	chr1.2:1810590-1810609	MS.gene24227:intron	20.0%
!!	ATAAAGGTGGTTATAAATTA+AGG	-	chr1.2:1810433-1810452	None:intergenic	20.0%
!!	ATTAAACTTGAGAAAGAATA+AGG	-	chr1.2:1810755-1810774	None:intergenic	20.0%
!!	CAAATTACTTATATATACTC+TGG	-	chr1.2:1809727-1809746	None:intergenic	20.0%
!!	CAGAGTATATATAAGTAATT+TGG	+	chr1.2:1809725-1809744	MS.gene24227:intron	20.0%
!!	CATAAAATAAACTCTAAACA+AGG	+	chr1.2:1810121-1810140	MS.gene24227:intron	20.0%
!!	GTTTGTGATGATATATTATA+TGG	+	chr1.2:1809449-1809468	MS.gene24227:intron	20.0%
!!	TGTTAAAAACCTAATTATAG+TGG	+	chr1.2:1809483-1809502	MS.gene24227:intron	20.0%
!!	TTCTTCGTGTATTATATTAT+AGG	-	chr1.2:1810013-1810032	None:intergenic	20.0%
!!!	ACTTTTGGATCAAAATATAT+AGG	-	chr1.2:1809227-1809246	None:intergenic	20.0%
!!!	CAACAAAGAATTTATTTTGT+TGG	+	chr1.2:1810362-1810381	MS.gene24227:intron	20.0%
!!!	CATGTATATTTTAGTGTATT+TGG	+	chr1.2:1809325-1809344	MS.gene24227:intron	20.0%
!!!	CTTGTTTAGAGTTTATTTTA+TGG	-	chr1.2:1810123-1810142	None:intergenic	20.0%
!!!	CTTTTGGATCAAAATATATA+GGG	-	chr1.2:1809226-1809245	None:intergenic	20.0%
!	AAAAAAACTAACCTAGAGAA+TGG	-	chr1.2:1810150-1810169	None:intergenic	25.0%
!	AAATTACTAAGTTAGTGTCA+CGG	-	chr1.2:1810317-1810336	None:intergenic	25.0%
!	AGGCTAATAATAACATTGAA+AGG	-	chr1.2:1810288-1810307	None:intergenic	25.0%
!	ATGATTATGACATTCATATG+TGG	-	chr1.2:1810071-1810090	None:intergenic	25.0%
!	CAAAACAAATAAGCACATAA+AGG	-	chr1.2:1810449-1810468	None:intergenic	25.0%
!!	CTTTATGTGCTTATTTGTTT+TGG	+	chr1.2:1810447-1810466	MS.gene24227:intron	25.0%
!!	GAACAATTCATAAACACTTT+TGG	-	chr1.2:1809242-1809261	None:intergenic	25.0%
!!	TATTTTATGGCACAAGTATT+TGG	-	chr1.2:1810110-1810129	None:intergenic	25.0%
!!!	ATTTGCCATTTTTATATGCA+TGG	+	chr1.2:1810234-1810253	MS.gene24227:intron	25.0%
!!!	TATTTTGACCATACTTTAGT+AGG	-	chr1.2:1809512-1809531	None:intergenic	25.0%
!!!	TTTGATGAATACCAGTTTTT+TGG	-	chr1.2:1809072-1809091	None:intergenic	25.0%
	AACAAATAAGCACATAAAGG+TGG	-	chr1.2:1810446-1810465	None:intergenic	30.0%
	ACCTTCTTATTCTTGAAAGA+AGG	+	chr1.2:1811094-1811113	MS.gene24227:CDS	30.0%
	ACCTTCTTTCAAGAATAAGA+AGG	-	chr1.2:1811098-1811117	None:intergenic	30.0%
	AGTAGGAAACCACTATAATT+AGG	-	chr1.2:1809495-1809514	None:intergenic	30.0%
	CTAGAATTGGAGCAATAAAA+CGG	-	chr1.2:1810644-1810663	None:intergenic	30.0%
	CTTATTCTTGAAAGAAGGTA+AGG	+	chr1.2:1811099-1811118	MS.gene24227:CDS	30.0%
	GATCATAAGATGACATAACA+TGG	-	chr1.2:1810915-1810934	None:intergenic	30.0%
	TAATTTAACCGTCAAACCTA+TGG	+	chr1.2:1809530-1809549	MS.gene24227:intron	30.0%
	TCTTTCAAGAATAAGAAGGT+TGG	-	chr1.2:1811094-1811113	None:intergenic	30.0%
!	TAATTAGGTTTTTAACACCG+TGG	-	chr1.2:1809480-1809499	None:intergenic	30.0%
!	TGTAGTTTTTGTCAAAATCG+TGG	+	chr1.2:1810835-1810854	MS.gene24227:intron	30.0%
!!	CACAGTTGGCAAATTTTAAT+TGG	-	chr1.2:1809945-1809964	None:intergenic	30.0%
!!!	AGAATTTTTCAAGACACAGT+TGG	-	chr1.2:1809959-1809978	None:intergenic	30.0%
	AAATGCAATCACCAAGCATA+AGG	+	chr1.2:1811162-1811181	MS.gene24227:CDS	35.0%
	AGTGGTTTCCTACTAAAGTA+TGG	+	chr1.2:1809501-1809520	MS.gene24227:intron	35.0%
	CTATTTGCCATAATTCAAGG+AGG	+	chr1.2:1809883-1809902	MS.gene24227:intron	35.0%
	CTGGACCATGCATATAAAAA+TGG	-	chr1.2:1810242-1810261	None:intergenic	35.0%
	GCACTATTTGCCATAATTCA+AGG	+	chr1.2:1809880-1809899	MS.gene24227:intron	35.0%
	GGTGGATATTGATGAAGTAA+AGG	+	chr1.2:1810704-1810723	MS.gene24227:CDS	35.0%
	TATATTATATGGAGCCACCA+CGG	+	chr1.2:1809460-1809479	MS.gene24227:intron	35.0%
	TTAGCAATCTCAGCTAGAAT+TGG	-	chr1.2:1810657-1810676	None:intergenic	35.0%
!	CATTTTTATATGCATGGTCC+AGG	+	chr1.2:1810240-1810259	MS.gene24227:intron	35.0%
!!	AACTAGTCTTAAAGCCGATT+CGG	+	chr1.2:1811025-1811044	MS.gene24227:intron	35.0%
!!	AGAGGAGATTAGTCTCATAA+CGG	+	chr1.2:1809414-1809433	MS.gene24227:intron	35.0%
!!	GATTAGTCTCATAACGGATT+TGG	+	chr1.2:1809420-1809439	MS.gene24227:intron	35.0%
	AACAGTTGCATCCTTATGCT+TGG	-	chr1.2:1811176-1811195	None:intergenic	40.0%
	AAGGAAGTGGATAAGGTAGT+TGG	+	chr1.2:1811118-1811137	MS.gene24227:CDS	40.0%
	AATATTGCCCTAGATCATCG+TGG	+	chr1.2:1809278-1809297	MS.gene24227:intron	40.0%
	AGAAGGTAAGGAAGTGGATA+AGG	+	chr1.2:1811111-1811130	MS.gene24227:CDS	40.0%
	ATTGGAGCAATAAAACGGCA+TGG	-	chr1.2:1810639-1810658	None:intergenic	40.0%
	CTTCATCAATATCCACCTTG+AGG	-	chr1.2:1810701-1810720	None:intergenic	40.0%
	CTTGAAAGAAGGTAAGGAAG+TGG	+	chr1.2:1811105-1811124	MS.gene24227:CDS	40.0%
	GGCAAATAGTGCATTGTGAT+TGG	-	chr1.2:1809872-1809891	None:intergenic	40.0%
	GGGAAATGACTCCAAAAAAC+TGG	+	chr1.2:1809058-1809077	MS.gene24227:CDS	40.0%
	TGTGGCTGAAAAATAGGAAG+TGG	+	chr1.2:1809906-1809925	MS.gene24227:intron	40.0%
	TTAGACCGCAACTTAAAGCT+CGG	-	chr1.2:1809373-1809392	None:intergenic	40.0%
!	GATTTTACTGCTTCATGGTG+TGG	+	chr1.2:1810612-1810631	MS.gene24227:CDS	40.0%
!	TTAGGTTTTTAACACCGTGG+TGG	-	chr1.2:1809477-1809496	None:intergenic	40.0%
!!	AAACAAGGGTACCATTCTCT+AGG	+	chr1.2:1810136-1810155	MS.gene24227:intron	40.0%
!!	AGTTAGTGTCACGGTTTTAG+AGG	-	chr1.2:1810308-1810327	None:intergenic	40.0%
!!!	TGGTGGATTTTACTGCTTCA+TGG	+	chr1.2:1810607-1810626	MS.gene24227:CDS	40.0%
!!!	TTTTGGAGTCATTTCCCTTC+TGG	-	chr1.2:1809055-1809074	None:intergenic	40.0%
	AACACTGTCCACGATGATCT+AGG	-	chr1.2:1809289-1809308	None:intergenic	45.0%
	ACACTGTCCACGATGATCTA+GGG	-	chr1.2:1809288-1809307	None:intergenic	45.0%
	ACCTGAAGTCATCTTCCTCA+AGG	+	chr1.2:1810683-1810702	MS.gene24227:CDS	45.0%
	ACCTTGAGGAAGATGACTTC+AGG	-	chr1.2:1810687-1810706	None:intergenic	45.0%
	AGCCACACCTCCTTGAATTA+TGG	-	chr1.2:1809893-1809912	None:intergenic	45.0%
	CTTGTGCACCATAGGTTTGA+CGG	-	chr1.2:1809541-1809560	None:intergenic	45.0%
	GTGTTCATACCGTTGAACAG+TGG	+	chr1.2:1809018-1809037	MS.gene24227:CDS	45.0%
	TAATCTCCTCTCGTGTGCTT+AGG	-	chr1.2:1809405-1809424	None:intergenic	45.0%
	TAGACCGCAACTTAAAGCTC+GGG	-	chr1.2:1809372-1809391	None:intergenic	45.0%
	TCATACCGTTGAACAGTGGA+AGG	+	chr1.2:1809022-1809041	MS.gene24227:CDS	45.0%
	TGAAGTCATCTTCCTCAAGG+TGG	+	chr1.2:1810686-1810705	MS.gene24227:CDS	45.0%
	TGCCATAATTCAAGGAGGTG+TGG	+	chr1.2:1809888-1809907	MS.gene24227:intron	45.0%
	TTGTCTCACTTGTGCACCAT+AGG	-	chr1.2:1809549-1809568	None:intergenic	45.0%
!	AGGAGGTGTGGCTGAAAAAT+AGG	+	chr1.2:1809900-1809919	MS.gene24227:intron	45.0%
!	TGGATAAGGTAGTTGGTGCT+AGG	+	chr1.2:1811125-1811144	MS.gene24227:CDS	45.0%
!!	ATCACCCGAGCTTTAAGTTG+CGG	+	chr1.2:1809365-1809384	MS.gene24227:intron	45.0%
!!	CACTCTGAAATAGGCCGAAT+CGG	-	chr1.2:1811042-1811061	None:intergenic	45.0%
!!	CCTATTTCAGAGTGTTGCTG+AGG	+	chr1.2:1811048-1811067	MS.gene24227:intron	45.0%
!!	CCTCAGCAACACTCTGAAAT+AGG	-	chr1.2:1811051-1811070	None:intergenic	45.0%
!!	TAAGGTAGTTGGTGCTAGGA+AGG	+	chr1.2:1811129-1811148	MS.gene24227:CDS	45.0%
!!	TTCAGAGTGTTGCTGAGGAA+TGG	+	chr1.2:1811053-1811072	MS.gene24227:intron	45.0%
	CTCCTCCTTCCACTGTTCAA+CGG	-	chr1.2:1809030-1809049	None:intergenic	50.0%
	GAACGCAAGTTCGTTCATCC+TGG	-	chr1.2:1810261-1810280	None:intergenic	50.0%
	TACCGTTGAACAGTGGAAGG+AGG	+	chr1.2:1809025-1809044	MS.gene24227:CDS	50.0%
	TCCTCTCGTGTGCTTAGGTT+CGG	-	chr1.2:1809400-1809419	None:intergenic	50.0%
	TGCTGAGGAATGGTCTGTTG+AGG	+	chr1.2:1811063-1811082	MS.gene24227:CDS	50.0%
	TGGAAGGAGGAGATCCAGAA+GGG	+	chr1.2:1809038-1809057	MS.gene24227:CDS	50.0%
	GCAGCTGAAGGACAGGTGAT+CGG	+	chr1.2:1808996-1809015	MS.gene24227:CDS	55.0%
	GTGGAAGGAGGAGATCCAGA+AGG	+	chr1.2:1809037-1809056	MS.gene24227:CDS	55.0%
	TCCGAACCTAAGCACACGAG+AGG	+	chr1.2:1809396-1809415	MS.gene24227:intron	55.0%
!	TGGTGCTAGGAAGGAAGAGC+TGG	+	chr1.2:1811138-1811157	MS.gene24227:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	1808993	1811207	1808993	ID=MS.gene24227
chr1.2	mRNA	1808993	1811207	1808993	ID=MS.gene24227.t1;Parent=MS.gene24227
chr1.2	exon	1808993	1809079	1808993	ID=MS.gene24227.t1.exon1;Parent=MS.gene24227.t1
chr1.2	CDS	1808993	1809079	1808993	ID=cds.MS.gene24227.t1;Parent=MS.gene24227.t1
chr1.2	exon	1810603	1810725	1810603	ID=MS.gene24227.t1.exon2;Parent=MS.gene24227.t1
chr1.2	CDS	1810603	1810725	1810603	ID=cds.MS.gene24227.t1;Parent=MS.gene24227.t1
chr1.2	exon	1811058	1811207	1811058	ID=MS.gene24227.t1.exon3;Parent=MS.gene24227.t1
chr1.2	CDS	1811058	1811207	1811058	ID=cds.MS.gene24227.t1;Parent=MS.gene24227.t1

Gene Sequence

>MS.gene24227

ATGGCAGCTGAAGGACAGGTGATCGGTGTTCATACCGTTGAACAGTGGAAGGAGGAGATCCAGAAGGGAAATGACTCCAAAAAACTGGTATTCATCAAATACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACTTTACTTTCAATCTTCTTCATATATATTTGCTTTTCGACCCTATATATTTTGATCCAAAAGTGTTTATGAATTGTTCAATATTCTTGTCTGAAAATATTGCCCTAGATCATCGTGGACAGTGTTAAGTTTTGTATAGTTACATGTATATTTTAGTGTATTTGGGTTAACAATTTAAGTTAATCACCCGAGCTTTAAGTTGCGGTCTAAGCATCCGAACCTAAGCACACGAGAGGAGATTAGTCTCATAACGGATTTGGACTTAAGTTTGTGATGATATATTATATGGAGCCACCACGGTGTTAAAAACCTAATTATAGTGGTTTCCTACTAAAGTATGGTCAAAATAATTTAACCGTCAAACCTATGGTGCACAAGTGAGACAAGTTTTACATCATGTATACAAACTTGTTTTTACTATTAGATCAAAAAGTCTTACTATTAAATCAAATGAGATATGATTGAAATTATTGATCCAATAATGAAAAACAAAATTGTACAAGTAGCAACACTAATTTACATGTTTTCATTAGATAAAACTCCAGAGTATATATAAGTAATTTGGAAGATGAAATATGATTAAACTATTTGAATATAAATTGTAATCAGTTTTCATAATATAATATAAGAGCAATGTTATATCTCTAGAAAAATAACATCAAGAATTCTTCAAGAATAAAGAGTAGCCAATCACAATGCACTATTTGCCATAATTCAAGGAGGTGTGGCTGAAAAATAGGAAGTGGACAAATAAATCATCCAATTAAAATTTGCCAACTGTGTCTTGAAAAATTCTTGAAGCTATTTTTCTTGAGAAGTAGCATTTTCCTATAATATAATACACGAAGAACTATTTGAAATTAGCTAGAAATAATGAGCTGAAAACCACATATGAATGTCATAATCATATTTTTATAAGTTCATCCAAATACTTGTGCCATAAAATAAACTCTAAACAAGGGTACCATTCTCTAGGTTAGTTTTTTTAACCTACATTAAATGCTTAATTTAAAATCAAATTTTTGTATCGTTGTGTTTTGAACTAAGCATAATTTGCCATTTTTATATGCATGGTCCAGGATGAACGAACTTGCGTTCCGTACCTTTCAATGTTATTATTAGCCTCTAAAACCGTGACACTAACTTAGTAATTTACTTTTTTATTTGTAGAGTTAACATCAACAAAGAATTTATTTTGTTGGTTGAAATGACAGTTGTGACATTTCAAAATGTCATTTTCATGTTTGCCTTAATTTATAACCACCTTTATGTGCTTATTTGTTTTGGAAACTTTATGCATTTAAATTATTTGAATATTTTTTGAGTTTAATTTTTTTTTTTTTTTTTTTGCTGTTTAAGTTGATAATAGCATTATTCATAACACTTATAATGAATTGCATTTCATTGAATAATATAATAGATTGTGGTGGATTTTACTGCTTCATGGTGTGGTCCATGCCGTTTTATTGCTCCAATTCTAGCTGAGATTGCTAAGAAGACACCTGAAGTCATCTTCCTCAAGGTGGATATTGATGAAGTAAAGGTATAAGCATATCTTAATCTATATTACCTTATTCTTTCTCAAGTTTAATACATGTTTAGAATCACATTGAGTTTGAAAAAATCACAACATGATTTTTGAAGCTCTATAGTGTAGTTTTTGTCAAAATCGTGGTAGCACGTAGTGATTCTTGATTCTGTCAAACTCAGATAACACAATCAAAGTTTACCATGTTATGTCATCTTATGATCATACTATAGAAACATTGTTTGAAACATGTTTCTAATATTTTAAGATGGTGACTGATTAATTACTATATAGTTAAACTTATTTTTACTTCAAACTAGTCTTAAAGCCGATTCGGCCTATTTCAGAGTGTTGCTGAGGAATGGTCTGTTGAGGCTATGCCAACCTTCTTATTCTTGAAAGAAGGTAAGGAAGTGGATAAGGTAGTTGGTGCTAGGAAGGAAGAGCTGGAAAATGCAATCACCAAGCATAAGGATGCAACTGTTGCTACTACTTGA

Protein sequence

>MS.gene24227.t1

MAAEGQVIGVHTVEQWKEEIQKGNDSKKLIVVDFTASWCGPCRFIAPILAEIAKKTPEVIFLKVDIDEVKSVAEEWSVEAMPTFLFLKEGKEVDKVVGARKEELENAITKHKDATVATT