Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014475.t1 | AAZ32865.1 | 100 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 6.30E-59 | 236.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014475.t1 | Q43636 | 80.0 | 115 | 23 | 0 | 1 | 115 | 1 | 115 | 3.0e-49 | 195.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014475.t1 | Q45NL7 | 100.0 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 4.5e-59 | 236.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56558 | MS.gene014475 | PPI |
| MS.gene014475 | MS.gene002305 | PPI |
| MS.gene014475 | MS.gene01283 | PPI |
| MS.gene96813 | MS.gene014475 | PPI |
| MS.gene01696 | MS.gene014475 | PPI |
| MS.gene006767 | MS.gene014475 | PPI |
| MS.gene031529 | MS.gene014475 | PPI |
| MS.gene69799 | MS.gene014475 | PPI |
| MS.gene014475 | MS.gene02264 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014475.t1 | MTR_3g112410 | 99.145 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 4.12e-81 | 233 |
| MS.gene014475.t1 | MTR_1g023140 | 83.036 | 112 | 19 | 0 | 1 | 112 | 1 | 112 | 4.69e-66 | 195 |
| MS.gene014475.t1 | MTR_5g021180 | 67.544 | 114 | 37 | 0 | 2 | 115 | 4 | 117 | 1.51e-55 | 169 |
| MS.gene014475.t1 | MTR_7g009070 | 50.495 | 101 | 50 | 0 | 12 | 112 | 32 | 132 | 5.72e-35 | 117 |
| MS.gene014475.t1 | MTR_8g005320 | 42.308 | 104 | 60 | 0 | 6 | 109 | 26 | 129 | 2.12e-32 | 111 |
| MS.gene014475.t1 | MTR_8g107460 | 48.214 | 112 | 58 | 0 | 2 | 113 | 250 | 361 | 2.27e-32 | 116 |
| MS.gene014475.t1 | MTR_8g006685 | 41.905 | 105 | 61 | 0 | 5 | 109 | 94 | 198 | 1.32e-31 | 111 |
| MS.gene014475.t1 | MTR_8g006560 | 41.905 | 105 | 61 | 0 | 5 | 109 | 94 | 198 | 1.32e-31 | 111 |
| MS.gene014475.t1 | MTR_5g037950 | 49.550 | 111 | 56 | 0 | 2 | 112 | 15 | 125 | 1.66e-30 | 105 |
| MS.gene014475.t1 | MTR_7g073680 | 44.554 | 101 | 56 | 0 | 6 | 106 | 24 | 124 | 2.08e-29 | 103 |
| MS.gene014475.t1 | MTR_5g037930 | 45.794 | 107 | 58 | 0 | 6 | 112 | 20 | 126 | 6.29e-28 | 99.4 |
| MS.gene014475.t1 | MTR_3g112400 | 54.000 | 100 | 26 | 3 | 3 | 102 | 2 | 81 | 2.29e-27 | 96.7 |
| MS.gene014475.t1 | MTR_5g037890 | 46.364 | 110 | 59 | 0 | 2 | 111 | 14 | 123 | 5.49e-27 | 97.1 |
| MS.gene014475.t1 | MTR_2g010750 | 40.952 | 105 | 62 | 0 | 5 | 109 | 8 | 112 | 1.45e-25 | 93.2 |
| MS.gene014475.t1 | MTR_2g082590 | 34.906 | 106 | 69 | 0 | 4 | 109 | 8 | 113 | 5.13e-22 | 84.3 |
| MS.gene014475.t1 | MTR_4g094690 | 38.000 | 100 | 60 | 1 | 9 | 106 | 62 | 161 | 7.09e-21 | 82.4 |
| MS.gene014475.t1 | MTR_4g081380 | 34.951 | 103 | 67 | 0 | 4 | 106 | 8 | 110 | 2.62e-20 | 80.1 |
| MS.gene014475.t1 | MTR_2g082590 | 33.613 | 119 | 66 | 2 | 4 | 109 | 8 | 126 | 7.74e-19 | 76.3 |
| MS.gene014475.t1 | MTR_1g098660 | 38.158 | 76 | 46 | 1 | 26 | 100 | 76 | 151 | 4.17e-18 | 75.5 |
| MS.gene014475.t1 | MTR_3g089065 | 35.398 | 113 | 68 | 3 | 2 | 112 | 63 | 172 | 2.79e-17 | 73.6 |
| MS.gene014475.t1 | MTR_7g080250 | 39.048 | 105 | 60 | 2 | 6 | 109 | 75 | 176 | 2.56e-16 | 70.9 |
| MS.gene014475.t1 | MTR_3g101740 | 38.679 | 106 | 55 | 3 | 21 | 117 | 109 | 213 | 1.05e-14 | 67.4 |
| MS.gene014475.t1 | MTR_7g102130 | 32.184 | 87 | 57 | 1 | 27 | 113 | 44 | 128 | 1.24e-14 | 65.5 |
| MS.gene014475.t1 | MTR_2g079420 | 40.000 | 75 | 44 | 1 | 27 | 100 | 85 | 159 | 2.69e-14 | 65.5 |
| MS.gene014475.t1 | MTR_2g010750 | 35.211 | 71 | 46 | 0 | 4 | 74 | 7 | 77 | 1.20e-13 | 62.0 |
| MS.gene014475.t1 | MTR_6g092700 | 30.357 | 112 | 73 | 3 | 6 | 114 | 75 | 184 | 4.45e-13 | 63.2 |
| MS.gene014475.t1 | MTR_1g114290 | 37.209 | 86 | 47 | 3 | 27 | 111 | 85 | 164 | 5.30e-13 | 62.4 |
| MS.gene014475.t1 | MTR_8g059015 | 35.632 | 87 | 54 | 2 | 27 | 111 | 88 | 174 | 6.48e-13 | 62.0 |
| MS.gene014475.t1 | MTR_3g435370 | 32.258 | 93 | 60 | 2 | 25 | 114 | 104 | 196 | 9.63e-13 | 62.8 |
| MS.gene014475.t1 | MTR_3g435370 | 32.258 | 93 | 60 | 2 | 25 | 114 | 104 | 196 | 1.20e-12 | 62.4 |
| MS.gene014475.t1 | MTR_4g088905 | 34.146 | 82 | 54 | 0 | 32 | 113 | 25 | 106 | 7.33e-12 | 60.8 |
| MS.gene014475.t1 | MTR_2g079340 | 35.135 | 74 | 47 | 1 | 27 | 99 | 51 | 124 | 1.96e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014475.t1 | AT3G51030 | 72.321 | 112 | 31 | 0 | 1 | 112 | 1 | 112 | 4.04e-60 | 180 |
| MS.gene014475.t1 | AT1G45145 | 59.459 | 111 | 45 | 0 | 3 | 113 | 2 | 112 | 3.54e-48 | 150 |
| MS.gene014475.t1 | AT1G19730 | 62.832 | 113 | 41 | 1 | 1 | 112 | 1 | 113 | 4.44e-47 | 147 |
| MS.gene014475.t1 | AT5G42980 | 62.500 | 112 | 42 | 0 | 3 | 114 | 2 | 113 | 1.10e-46 | 146 |
| MS.gene014475.t1 | AT5G39950 | 44.037 | 109 | 61 | 0 | 3 | 111 | 22 | 130 | 7.40e-32 | 109 |
| MS.gene014475.t1 | AT3G08710 | 41.905 | 105 | 61 | 0 | 6 | 110 | 23 | 127 | 7.91e-29 | 102 |
| MS.gene014475.t1 | AT3G08710 | 41.905 | 105 | 61 | 0 | 6 | 110 | 23 | 127 | 7.91e-29 | 102 |
| MS.gene014475.t1 | AT3G08710 | 41.905 | 105 | 61 | 0 | 6 | 110 | 23 | 127 | 7.91e-29 | 102 |
| MS.gene014475.t1 | AT3G56420 | 41.346 | 104 | 61 | 0 | 3 | 106 | 37 | 140 | 1.13e-28 | 102 |
| MS.gene014475.t1 | AT3G56420 | 41.346 | 104 | 61 | 0 | 3 | 106 | 37 | 140 | 1.13e-28 | 102 |
| MS.gene014475.t1 | AT3G56420 | 41.346 | 104 | 61 | 0 | 3 | 106 | 37 | 140 | 1.13e-28 | 102 |
| MS.gene014475.t1 | AT3G17880 | 38.596 | 114 | 70 | 0 | 2 | 115 | 259 | 372 | 3.04e-27 | 103 |
| MS.gene014475.t1 | AT3G17880 | 38.596 | 114 | 70 | 0 | 2 | 115 | 266 | 379 | 3.07e-27 | 103 |
| MS.gene014475.t1 | AT1G59730 | 40.741 | 108 | 64 | 0 | 5 | 112 | 20 | 127 | 3.82e-27 | 97.4 |
| MS.gene014475.t1 | AT2G40790 | 42.157 | 102 | 59 | 0 | 5 | 106 | 39 | 140 | 1.92e-25 | 94.0 |
| MS.gene014475.t1 | AT2G40790 | 42.157 | 102 | 59 | 0 | 5 | 106 | 39 | 140 | 1.92e-25 | 94.0 |
| MS.gene014475.t1 | AT1G69880 | 36.111 | 108 | 69 | 0 | 8 | 115 | 39 | 146 | 3.11e-24 | 90.5 |
| MS.gene014475.t1 | AT1G11530 | 39.604 | 101 | 61 | 0 | 6 | 106 | 2 | 102 | 3.16e-22 | 84.7 |
| MS.gene014475.t1 | AT2G35010 | 37.383 | 107 | 65 | 1 | 2 | 106 | 80 | 186 | 1.16e-18 | 77.4 |
| MS.gene014475.t1 | AT2G35010 | 37.383 | 107 | 65 | 1 | 2 | 106 | 80 | 186 | 1.16e-18 | 77.4 |
| MS.gene014475.t1 | AT1G43560 | 35.556 | 90 | 54 | 2 | 12 | 100 | 63 | 149 | 6.70e-18 | 74.7 |
| MS.gene014475.t1 | AT1G76760 | 36.842 | 76 | 47 | 1 | 26 | 100 | 79 | 154 | 2.32e-17 | 73.6 |
| MS.gene014475.t1 | AT5G16400 | 42.683 | 82 | 46 | 1 | 29 | 109 | 98 | 179 | 4.05e-17 | 73.2 |
| MS.gene014475.t1 | AT3G02730 | 39.048 | 105 | 60 | 3 | 6 | 109 | 68 | 169 | 2.26e-16 | 71.2 |
| MS.gene014475.t1 | AT1G31020 | 41.250 | 80 | 45 | 1 | 32 | 109 | 75 | 154 | 1.06e-15 | 68.9 |
| MS.gene014475.t1 | AT4G26160 | 36.782 | 87 | 52 | 2 | 29 | 112 | 114 | 200 | 1.04e-14 | 67.8 |
| MS.gene014475.t1 | AT1G07700 | 34.286 | 105 | 61 | 2 | 21 | 117 | 100 | 204 | 2.32e-13 | 63.9 |
| MS.gene014475.t1 | AT1G07700 | 34.286 | 105 | 61 | 2 | 21 | 117 | 100 | 204 | 2.32e-13 | 63.9 |
| MS.gene014475.t1 | AT1G07700 | 34.286 | 105 | 61 | 2 | 21 | 117 | 100 | 204 | 2.32e-13 | 63.9 |
| MS.gene014475.t1 | AT3G15360 | 34.940 | 83 | 52 | 2 | 31 | 111 | 107 | 189 | 3.46e-13 | 63.2 |
| MS.gene014475.t1 | AT1G07700 | 34.286 | 105 | 61 | 2 | 21 | 117 | 113 | 217 | 5.32e-13 | 63.2 |
| MS.gene014475.t1 | AT1G03680 | 36.145 | 83 | 51 | 2 | 31 | 111 | 95 | 177 | 7.06e-13 | 62.0 |
| MS.gene014475.t1 | AT5G61440 | 33.333 | 93 | 59 | 2 | 25 | 114 | 102 | 194 | 1.76e-12 | 62.0 |
| MS.gene014475.t1 | AT4G32580 | 30.851 | 94 | 65 | 0 | 18 | 111 | 11 | 104 | 4.22e-12 | 59.7 |
| MS.gene014475.t1 | AT5G61440 | 36.986 | 73 | 44 | 1 | 25 | 95 | 102 | 174 | 6.71e-12 | 59.7 |
| MS.gene014475.t1 | AT4G03520 | 30.357 | 112 | 73 | 3 | 2 | 111 | 75 | 183 | 1.16e-11 | 58.9 |
| MS.gene014475.t1 | AT3G53220 | 29.545 | 88 | 60 | 1 | 26 | 113 | 41 | 126 | 1.17e-11 | 57.8 |
| MS.gene014475.t1 | AT4G04950 | 31.250 | 96 | 66 | 0 | 18 | 113 | 11 | 106 | 2.98e-11 | 59.3 |
| MS.gene014475.t1 | AT4G29670 | 30.631 | 111 | 72 | 4 | 7 | 114 | 104 | 212 | 3.88e-11 | 58.2 |
Find 40 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGCAATCTCTGCCAAAAT+TGG | 0.176845 | 3.1:+89636396 | None:intergenic |
| CCGTTTCATTGCCCCAATTT+TGG | 0.206429 | 3.1:-89636409 | MS.gene014475:CDS |
| GTAATTACGAACCAGTTTCT+TGG | 0.284749 | 3.1:+89637594 | None:intergenic |
| TAGTTGATTTCACCGCTTCT+TGG | 0.325324 | 3.1:-89636443 | MS.gene014475:CDS |
| TAGCAATCTCTGCCAAAATT+GGG | 0.369203 | 3.1:+89636397 | None:intergenic |
| AGCATCAGTAGTTGCATGCT+TGG | 0.386308 | 3.1:+89636088 | None:intergenic |
| GTTCTTGAAAGAAGGAAAAC+TGG | 0.392911 | 3.1:-89636159 | MS.gene014475:CDS |
| ACCTTGAGGAAGGTGACATT+GGG | 0.411403 | 3.1:+89636366 | None:intergenic |
| GAACACCTCGAGAAGGGAAA+TGG | 0.415243 | 3.1:-89637619 | MS.gene014475:CDS |
| GGGAAATGGATCCAAGAAAC+TGG | 0.447832 | 3.1:-89637605 | MS.gene014475:intron |
| CCAAAATTGGGGCAATGAAA+CGG | 0.448396 | 3.1:+89636409 | None:intergenic |
| ACATTCCTGTTCTTGAAAGA+AGG | 0.467029 | 3.1:-89636167 | MS.gene014475:CDS |
| ATGCAACTACTGATGCTTGA+AGG | 0.470064 | 3.1:-89636082 | None:intergenic |
| TTCAGACTGTTGCTGAGGAG+TGG | 0.473458 | 3.1:-89636208 | MS.gene014475:intron |
| TCAGACTGTTGCTGAGGAGT+GGG | 0.483366 | 3.1:-89636207 | MS.gene014475:intron |
| CAAGGTTGTTGGTGCTCAGA+AGG | 0.494072 | 3.1:-89636132 | MS.gene014475:CDS |
| AACCTTGAGGAAGGTGACAT+TGG | 0.503335 | 3.1:+89636365 | None:intergenic |
| GAGTTCACACTGTGGAGGCT+TGG | 0.518585 | 3.1:-89637645 | MS.gene014475:CDS |
| TCACACTGTGGAGGCTTGGA+AGG | 0.528778 | 3.1:-89637641 | MS.gene014475:CDS |
| TCTTTCAAGAACAGGAATGT+TGG | 0.532437 | 3.1:+89636170 | None:intergenic |
| GATTTCACCGCTTCTTGGTG+TGG | 0.537233 | 3.1:-89636438 | MS.gene014475:CDS |
| GGTTGATGTTGATGAATTGA+AGG | 0.538032 | 3.1:-89636346 | MS.gene014475:intron |
| TGGATCCATTTCCCTTCTCG+AGG | 0.549771 | 3.1:+89637614 | None:intergenic |
| AGCAATCTCTGCCAAAATTG+GGG | 0.564435 | 3.1:+89636398 | None:intergenic |
| GCAGAAGAGGGACAAGTGAT+CGG | 0.567124 | 3.1:-89637667 | MS.gene014475:CDS |
| AGAAGGAAAACTGGTGGACA+AGG | 0.574044 | 3.1:-89636150 | MS.gene014475:CDS |
| ATCTCTTCAGACTGTTGCTG+AGG | 0.574853 | 3.1:-89636213 | MS.gene014475:intron |
| GCCCAATGTCACCTTCCTCA+AGG | 0.579615 | 3.1:-89636367 | MS.gene014475:CDS |
| TTGGGGCAATGAAACGGCAC+GGG | 0.587094 | 3.1:+89636415 | None:intergenic |
| TTGGAAGGAACACCTCGAGA+AGG | 0.587167 | 3.1:-89637626 | MS.gene014475:CDS |
| AAACTGGTGGACAAGGTTGT+TGG | 0.590284 | 3.1:-89636143 | MS.gene014475:CDS |
| ATCAACATCAACCTTGAGGA+AGG | 0.593122 | 3.1:+89636356 | None:intergenic |
| TGGAAGGAACACCTCGAGAA+GGG | 0.609279 | 3.1:-89637625 | MS.gene014475:CDS |
| ATTGGGGCAATGAAACGGCA+CGG | 0.611827 | 3.1:+89636414 | None:intergenic |
| GCACGGGCCACACCAAGAAG+CGG | 0.614346 | 3.1:+89636431 | None:intergenic |
| ATTCATCAACATCAACCTTG+AGG | 0.626748 | 3.1:+89636352 | None:intergenic |
| GATCACTTGTCCCTCTTCTG+CGG | 0.658362 | 3.1:+89637669 | None:intergenic |
| CTTGAAAGAAGGAAAACTGG+TGG | 0.661466 | 3.1:-89636156 | MS.gene014475:CDS |
| GATCGGAGTTCACACTGTGG+AGG | 0.679680 | 3.1:-89637650 | MS.gene014475:CDS |
| AGTGATCGGAGTTCACACTG+TGG | 0.799746 | 3.1:-89637653 | MS.gene014475:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATATTAGTATAAATAA+GGG | - | chr3.1:89636770-89636789 | MS.gene014475:intron | 10.0% |
| !!! | TTTTCATATTAGTATAAATA+AGG | - | chr3.1:89636769-89636788 | MS.gene014475:intron | 10.0% |
| !! | TCTAATATTAGTACAAATAA+GGG | - | chr3.1:89636917-89636936 | MS.gene014475:intron | 15.0% |
| !!! | ACTATTGATTATTATTATTC+TGG | - | chr3.1:89636288-89636307 | MS.gene014475:intron | 15.0% |
| !! | AAAACAATAATAATGTCATG+TGG | + | chr3.1:89637456-89637475 | None:intergenic | 20.0% |
| !! | GTCTAATATTAGTACAAATA+AGG | - | chr3.1:89636916-89636935 | MS.gene014475:intron | 20.0% |
| !! | TAAAACAAAGATTTGACATA+AGG | + | chr3.1:89637147-89637166 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAGATAAAGAGAA+CGG | + | chr3.1:89636996-89637015 | None:intergenic | 20.0% |
| !!! | CAATGAATAACTTATGTTTT+TGG | + | chr3.1:89636580-89636599 | None:intergenic | 20.0% |
| !!! | GTGAAAAATCAAGAATTTTA+AGG | + | chr3.1:89637241-89637260 | None:intergenic | 20.0% |
| !!! | TGAACTTGTTTAAAATTAAG+TGG | + | chr3.1:89637263-89637282 | None:intergenic | 20.0% |
| !!! | TGTTGAAATTTTAAGAAATG+AGG | - | chr3.1:89636693-89636712 | MS.gene014475:intron | 20.0% |
| !!! | TTCAGCAAATTACTTTTTAA+CGG | - | chr3.1:89637048-89637067 | MS.gene014475:intron | 20.0% |
| !!! | TTGATACTTAGTTTAGAATT+TGG | - | chr3.1:89636892-89636911 | MS.gene014475:intron | 20.0% |
| ! | AAAAGAAATCGTAAAGCTTT+AGG | + | chr3.1:89637490-89637509 | None:intergenic | 25.0% |
| ! | AAATAATGATTGAGTGCATA+GGG | - | chr3.1:89636353-89636372 | MS.gene014475:CDS | 25.0% |
| ! | ACTTAATCTTCAATGATTAC+TGG | - | chr3.1:89637103-89637122 | MS.gene014475:intron | 25.0% |
| ! | AGGATTAAGTCAATATTGTT+GGG | - | chr3.1:89636713-89636732 | MS.gene014475:intron | 25.0% |
| ! | GAGCAAAAGAATGTTTAAAA+TGG | - | chr3.1:89636480-89636499 | MS.gene014475:intron | 25.0% |
| ! | TAAATAATGATTGAGTGCAT+AGG | - | chr3.1:89636352-89636371 | MS.gene014475:CDS | 25.0% |
| ! | TAAGTTAATTGCAGAATTCT+TGG | + | chr3.1:89637520-89637539 | None:intergenic | 25.0% |
| ! | TGTGAATTTAATCCTTCAAT+TGG | - | chr3.1:89636322-89636341 | MS.gene014475:intron | 25.0% |
| !! | ATTCTGTTTGTCAACTTTTT+CGG | - | chr3.1:89636510-89636529 | MS.gene014475:intron | 25.0% |
| !! | TTTTCCATTTCCTTAGTTTA+GGG | - | chr3.1:89636237-89636256 | MS.gene014475:intron | 25.0% |
| !!! | ATTTAAGGGTTTTAAGTTAG+AGG | - | chr3.1:89636649-89636668 | MS.gene014475:intron | 25.0% |
| AATCACAAATTATACCGAAG+AGG | + | chr3.1:89637218-89637237 | None:intergenic | 30.0% | |
| ACAATTAGATCCCTAAACTA+AGG | + | chr3.1:89636250-89636269 | None:intergenic | 30.0% | |
| AGTTTAGGGATCTAATTGTT+AGG | - | chr3.1:89636251-89636270 | MS.gene014475:intron | 30.0% | |
| ATCATTGAAGATTAAGTGTC+AGG | + | chr3.1:89637100-89637119 | None:intergenic | 30.0% | |
| ATTGAATATTGTAGCCTCTT+CGG | - | chr3.1:89637201-89637220 | MS.gene014475:intron | 30.0% | |
| ATTTAGTGTCATCCAATTGA+AGG | + | chr3.1:89636337-89636356 | None:intergenic | 30.0% | |
| ATTTCATAGCTTAGAACTTC+GGG | - | chr3.1:89636404-89636423 | MS.gene014475:CDS | 30.0% | |
| CATTTCATAGCTTAGAACTT+CGG | - | chr3.1:89636403-89636422 | MS.gene014475:CDS | 30.0% | |
| GAGACAAAAATTGCTCATTA+GGG | - | chr3.1:89636735-89636754 | MS.gene014475:intron | 30.0% | |
| GAGGATTAAGTCAATATTGT+TGG | - | chr3.1:89636712-89636731 | MS.gene014475:intron | 30.0% | |
| GTTTAGGGATCTAATTGTTA+GGG | - | chr3.1:89636252-89636271 | MS.gene014475:intron | 30.0% | |
| ! | AGTTGATATGAAATAACAGC+TGG | + | chr3.1:89637029-89637048 | None:intergenic | 30.0% |
| ! | GTTTTCCATTTCCTTAGTTT+AGG | - | chr3.1:89636236-89636255 | MS.gene014475:intron | 30.0% |
| !! | CAAAAAGTGTTGGGATTTAA+GGG | - | chr3.1:89636635-89636654 | MS.gene014475:intron | 30.0% |
| ACATTCCTGTTCTTGAAAGA+AGG | - | chr3.1:89637591-89637610 | MS.gene014475:intron | 35.0% | |
| AGATCCCTAAACTAAGGAAA+TGG | + | chr3.1:89636244-89636263 | None:intergenic | 35.0% | |
| ATAACAACAACCAAGCCTTA+TGG | + | chr3.1:89636855-89636874 | None:intergenic | 35.0% | |
| ATTCATCAACATCAACCTTG+AGG | + | chr3.1:89637409-89637428 | None:intergenic | 35.0% | |
| GAAATACTGTAAGTTCAGGT+TGG | + | chr3.1:89637078-89637097 | None:intergenic | 35.0% | |
| GGAGACAAAAATTGCTCATT+AGG | - | chr3.1:89636734-89636753 | MS.gene014475:intron | 35.0% | |
| GTAATTACGAACCAGTTTCT+TGG | + | chr3.1:89636167-89636186 | None:intergenic | 35.0% | |
| GTTCTTGAAAGAAGGAAAAC+TGG | - | chr3.1:89637599-89637618 | MS.gene014475:intron | 35.0% | |
| TAGCAATCTCTGCCAAAATT+GGG | + | chr3.1:89637364-89637383 | None:intergenic | 35.0% | |
| TATTTGTTCTTAGCCCCATA+AGG | - | chr3.1:89636837-89636856 | MS.gene014475:intron | 35.0% | |
| TCAGGAAATACTGTAAGTTC+AGG | + | chr3.1:89637082-89637101 | None:intergenic | 35.0% | |
| TCGAAATTAAAACCGCACTA+GGG | - | chr3.1:89636214-89636233 | MS.gene014475:intron | 35.0% | |
| TCTTTCAAGAACAGGAATGT+TGG | + | chr3.1:89637591-89637610 | None:intergenic | 35.0% | |
| TTAGCAATCTCTGCCAAAAT+TGG | + | chr3.1:89637365-89637384 | None:intergenic | 35.0% | |
| TTCGAAATTAAAACCGCACT+AGG | - | chr3.1:89636213-89636232 | MS.gene014475:intron | 35.0% | |
| ! | CCTTAAATCCCAACACTTTT+TGG | + | chr3.1:89636637-89636656 | None:intergenic | 35.0% |
| ! | GGTTGATGTTGATGAATTGA+AGG | - | chr3.1:89637412-89637431 | MS.gene014475:intron | 35.0% |
| ! | GTTTTCCTTCTTTCAAGAAC+AGG | + | chr3.1:89637599-89637618 | None:intergenic | 35.0% |
| ! | TAACAACAACCAAGCCTTAT+GGG | + | chr3.1:89636854-89636873 | None:intergenic | 35.0% |
| ! | TAACAGTGACCAAAAAGTGT+TGG | - | chr3.1:89636625-89636644 | MS.gene014475:intron | 35.0% |
| !! | AACAGTGACCAAAAAGTGTT+GGG | - | chr3.1:89636626-89636645 | MS.gene014475:intron | 35.0% |
| !! | CCAAAAAGTGTTGGGATTTA+AGG | - | chr3.1:89636634-89636653 | MS.gene014475:intron | 35.0% |
| AGCAATCTCTGCCAAAATTG+GGG | + | chr3.1:89637363-89637382 | None:intergenic | 40.0% | |
| ATCAACATCAACCTTGAGGA+AGG | + | chr3.1:89637405-89637424 | None:intergenic | 40.0% | |
| CATTGAACAACTGATGCATC+TGG | - | chr3.1:89636535-89636554 | MS.gene014475:intron | 40.0% | |
| CCAAAATTGGGGCAATGAAA+CGG | + | chr3.1:89637352-89637371 | None:intergenic | 40.0% | |
| CTTGAAAGAAGGAAAACTGG+TGG | - | chr3.1:89637602-89637621 | MS.gene014475:intron | 40.0% | |
| ! | AACAACAACCAAGCCTTATG+GGG | + | chr3.1:89636853-89636872 | None:intergenic | 40.0% |
| ! | AGAACTTCGGGTTTAGAAGA+TGG | - | chr3.1:89636416-89636435 | MS.gene014475:CDS | 40.0% |
| ! | TAGTTGATTTCACCGCTTCT+TGG | - | chr3.1:89637315-89637334 | MS.gene014475:intron | 40.0% |
| AACCTTGAGGAAGGTGACAT+TGG | + | chr3.1:89637396-89637415 | None:intergenic | 45.0% | |
| ACCTTGAGGAAGGTGACATT+GGG | + | chr3.1:89637395-89637414 | None:intergenic | 45.0% | |
| AGCATCAGTAGTTGCATGCT+TGG | + | chr3.1:89637673-89637692 | None:intergenic | 45.0% | |
| ATCTCTTCAGACTGTTGCTG+AGG | - | chr3.1:89637545-89637564 | MS.gene014475:intron | 45.0% | |
| GGAAATGGAAAACCCTAGTG+CGG | + | chr3.1:89636229-89636248 | None:intergenic | 45.0% | |
| GGGAAATGGATCCAAGAAAC+TGG | - | chr3.1:89636153-89636172 | MS.gene014475:CDS | 45.0% | |
| GGGTTTAGAAGATGGAGAGA+GGG | - | chr3.1:89636424-89636443 | MS.gene014475:CDS | 45.0% | |
| ! | AAACTGGTGGACAAGGTTGT+TGG | - | chr3.1:89637615-89637634 | MS.gene014475:CDS | 45.0% |
| ! | AGAAGGAAAACTGGTGGACA+AGG | - | chr3.1:89637608-89637627 | MS.gene014475:CDS | 45.0% |
| ! | CCGTTTCATTGCCCCAATTT+TGG | - | chr3.1:89637349-89637368 | MS.gene014475:intron | 45.0% |
| AGTGATCGGAGTTCACACTG+TGG | - | chr3.1:89636105-89636124 | MS.gene014475:CDS | 50.0% | |
| ATTGGGGCAATGAAACGGCA+CGG | + | chr3.1:89637347-89637366 | None:intergenic | 50.0% | |
| CGGGTTTAGAAGATGGAGAG+AGG | - | chr3.1:89636423-89636442 | MS.gene014475:CDS | 50.0% | |
| GAACACCTCGAGAAGGGAAA+TGG | - | chr3.1:89636139-89636158 | MS.gene014475:CDS | 50.0% | |
| GATCACTTGTCCCTCTTCTG+CGG | + | chr3.1:89636092-89636111 | None:intergenic | 50.0% | |
| GATTTCACCGCTTCTTGGTG+TGG | - | chr3.1:89637320-89637339 | MS.gene014475:intron | 50.0% | |
| GCAGAAGAGGGACAAGTGAT+CGG | - | chr3.1:89636091-89636110 | MS.gene014475:CDS | 50.0% | |
| GTTCTTAGCCCCATAAGGCT+TGG | - | chr3.1:89636842-89636861 | MS.gene014475:intron | 50.0% | |
| TCAGACTGTTGCTGAGGAGT+GGG | - | chr3.1:89637551-89637570 | MS.gene014475:intron | 50.0% | |
| TGGAAGGAACACCTCGAGAA+GGG | - | chr3.1:89636133-89636152 | MS.gene014475:CDS | 50.0% | |
| TGGATCCATTTCCCTTCTCG+AGG | + | chr3.1:89636147-89636166 | None:intergenic | 50.0% | |
| TTCAGACTGTTGCTGAGGAG+TGG | - | chr3.1:89637550-89637569 | MS.gene014475:intron | 50.0% | |
| TTGGAAGGAACACCTCGAGA+AGG | - | chr3.1:89636132-89636151 | MS.gene014475:CDS | 50.0% | |
| ! | CAAGGTTGTTGGTGCTCAGA+AGG | - | chr3.1:89637626-89637645 | MS.gene014475:CDS | 50.0% |
| GAGTTCACACTGTGGAGGCT+TGG | - | chr3.1:89636113-89636132 | MS.gene014475:CDS | 55.0% | |
| GATCGGAGTTCACACTGTGG+AGG | - | chr3.1:89636108-89636127 | MS.gene014475:CDS | 55.0% | |
| GCCCAATGTCACCTTCCTCA+AGG | - | chr3.1:89637391-89637410 | MS.gene014475:intron | 55.0% | |
| TCACACTGTGGAGGCTTGGA+AGG | - | chr3.1:89636117-89636136 | MS.gene014475:CDS | 55.0% | |
| TTGGGGCAATGAAACGGCAC+GGG | + | chr3.1:89637346-89637365 | None:intergenic | 55.0% | |
| GCACGGGCCACACCAAGAAG+CGG | + | chr3.1:89637330-89637349 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 89636085 | 89637695 | 89636085 | ID=MS.gene014475 |
| chr3.1 | mRNA | 89636085 | 89637695 | 89636085 | ID=MS.gene014475.t1;Parent=MS.gene014475 |
| chr3.1 | exon | 89637606 | 89637695 | 89637606 | ID=MS.gene014475.t1.exon1;Parent=MS.gene014475.t1 |
| chr3.1 | CDS | 89637606 | 89637695 | 89637606 | ID=cds.MS.gene014475.t1;Parent=MS.gene014475.t1 |
| chr3.1 | exon | 89636347 | 89636469 | 89636347 | ID=MS.gene014475.t1.exon2;Parent=MS.gene014475.t1 |
| chr3.1 | CDS | 89636347 | 89636469 | 89636347 | ID=cds.MS.gene014475.t1;Parent=MS.gene014475.t1 |
| chr3.1 | exon | 89636085 | 89636225 | 89636085 | ID=MS.gene014475.t1.exon3;Parent=MS.gene014475.t1 |
| chr3.1 | CDS | 89636085 | 89636225 | 89636085 | ID=cds.MS.gene014475.t1;Parent=MS.gene014475.t1 |
| Gene Sequence |
| Protein sequence |
