AlfalfaGEDB | MS.gene42302

M. sativa cultivar XinJiangDaYe / MS.gene42302

KEGG: K03671
GO: GO:0003674 GO:0003824 GO:0006662 GO:0008150 GO:0008152 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0018904 GO:0019725 GO:0042592 GO:0044281 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704
PFAM: PF00085.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42302.t1	AAZ32865.1	100	117	0	0	1	117	1	117	6.30E-59	236.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42302.t1	Q43636	80.0	115	23	0	1	115	1	115	3.0e-49	195.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42302.t1	Q45NL7	100.0	117	0	0	1	117	1	117	4.5e-59	236.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049653	MS.gene42302	0.809757	1.62E-50	-1.69E-46
MS.gene050437	MS.gene42302	0.805891	1.07E-49	-1.69E-46
MS.gene050689	MS.gene42302	0.807607	4.65E-50	-1.69E-46
MS.gene050752	MS.gene42302	0.837549	4.87E-57	-1.69E-46
MS.gene050955	MS.gene42302	0.819959	8.83E-53	-1.69E-46
MS.gene051003	MS.gene42302	0.820108	8.16E-53	-1.69E-46
MS.gene051343	MS.gene42302	0.819253	1.28E-52	-1.69E-46
MS.gene051856	MS.gene42302	0.805211	1.49E-49	-1.69E-46
MS.gene052108	MS.gene42302	0.802037	6.79E-49	-1.69E-46
MS.gene052954	MS.gene42302	0.826703	2.35E-54	-1.69E-46
MS.gene053045	MS.gene42302	0.822172	2.73E-53	-1.69E-46
MS.gene053058	MS.gene42302	0.803997	2.67E-49	-1.69E-46
MS.gene053590	MS.gene42302	0.836725	7.91E-57	-1.69E-46
MS.gene05364	MS.gene42302	0.80777	4.30E-50	-1.69E-46
MS.gene053931	MS.gene42302	0.819989	8.69E-53	-1.69E-46
MS.gene054403	MS.gene42302	0.841113	5.78E-58	-1.69E-46
MS.gene05517	MS.gene42302	0.826273	2.97E-54	-1.69E-46
MS.gene055623	MS.gene42302	0.803158	3.98E-49	-1.69E-46
MS.gene055841	MS.gene42302	0.819274	1.27E-52	-1.69E-46
MS.gene057208	MS.gene42302	0.826287	2.95E-54	-1.69E-46
MS.gene057392	MS.gene42302	0.861772	8.11E-64	-1.69E-46
MS.gene057694	MS.gene42302	0.827431	1.57E-54	-1.69E-46
MS.gene057705	MS.gene42302	0.813399	2.61E-51	-1.69E-46
MS.gene058008	MS.gene42302	0.8249	6.28E-54	-1.69E-46
MS.gene058009	MS.gene42302	0.818296	2.11E-52	-1.69E-46
MS.gene058976	MS.gene42302	0.820127	8.08E-53	-1.69E-46
MS.gene059146	MS.gene42302	0.820367	7.12E-53	-1.69E-46
MS.gene060244	MS.gene42302	0.817551	3.11E-52	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene006767	MS.gene42302	PPI
MS.gene42302	MS.gene02264	PPI
MS.gene42302	MS.gene56558	PPI
MS.gene01696	MS.gene42302	PPI
MS.gene42302	MS.gene01283	PPI
MS.gene031529	MS.gene42302	PPI
MS.gene69799	MS.gene42302	PPI
MS.gene42302	MS.gene96813	PPI
MS.gene42302	MS.gene002305	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42302.t1	MTR_3g112410	99.145	117	1	0	1	117	1	117	4.12e-81	233
MS.gene42302.t1	MTR_1g023140	83.036	112	19	0	1	112	1	112	4.69e-66	195
MS.gene42302.t1	MTR_5g021180	67.544	114	37	0	2	115	4	117	1.51e-55	169
MS.gene42302.t1	MTR_7g009070	50.495	101	50	0	12	112	32	132	5.72e-35	117
MS.gene42302.t1	MTR_8g005320	42.308	104	60	0	6	109	26	129	2.12e-32	111
MS.gene42302.t1	MTR_8g107460	48.214	112	58	0	2	113	250	361	2.27e-32	116
MS.gene42302.t1	MTR_8g006685	41.905	105	61	0	5	109	94	198	1.32e-31	111
MS.gene42302.t1	MTR_8g006560	41.905	105	61	0	5	109	94	198	1.32e-31	111
MS.gene42302.t1	MTR_5g037950	49.550	111	56	0	2	112	15	125	1.66e-30	105
MS.gene42302.t1	MTR_7g073680	44.554	101	56	0	6	106	24	124	2.08e-29	103
MS.gene42302.t1	MTR_5g037930	45.794	107	58	0	6	112	20	126	6.29e-28	99.4
MS.gene42302.t1	MTR_3g112400	54.000	100	26	3	3	102	2	81	2.29e-27	96.7
MS.gene42302.t1	MTR_5g037890	46.364	110	59	0	2	111	14	123	5.49e-27	97.1
MS.gene42302.t1	MTR_2g010750	40.952	105	62	0	5	109	8	112	1.45e-25	93.2
MS.gene42302.t1	MTR_2g082590	34.906	106	69	0	4	109	8	113	5.13e-22	84.3
MS.gene42302.t1	MTR_4g094690	38.000	100	60	1	9	106	62	161	7.09e-21	82.4
MS.gene42302.t1	MTR_4g081380	34.951	103	67	0	4	106	8	110	2.62e-20	80.1
MS.gene42302.t1	MTR_2g082590	33.613	119	66	2	4	109	8	126	7.74e-19	76.3
MS.gene42302.t1	MTR_1g098660	38.158	76	46	1	26	100	76	151	4.17e-18	75.5
MS.gene42302.t1	MTR_3g089065	35.398	113	68	3	2	112	63	172	2.79e-17	73.6
MS.gene42302.t1	MTR_7g080250	39.048	105	60	2	6	109	75	176	2.56e-16	70.9
MS.gene42302.t1	MTR_3g101740	38.679	106	55	3	21	117	109	213	1.05e-14	67.4
MS.gene42302.t1	MTR_7g102130	32.184	87	57	1	27	113	44	128	1.24e-14	65.5
MS.gene42302.t1	MTR_2g079420	40.000	75	44	1	27	100	85	159	2.69e-14	65.5
MS.gene42302.t1	MTR_2g010750	35.211	71	46	0	4	74	7	77	1.20e-13	62.0
MS.gene42302.t1	MTR_6g092700	30.357	112	73	3	6	114	75	184	4.45e-13	63.2
MS.gene42302.t1	MTR_1g114290	37.209	86	47	3	27	111	85	164	5.30e-13	62.4
MS.gene42302.t1	MTR_8g059015	35.632	87	54	2	27	111	88	174	6.48e-13	62.0
MS.gene42302.t1	MTR_3g435370	32.258	93	60	2	25	114	104	196	9.63e-13	62.8
MS.gene42302.t1	MTR_3g435370	32.258	93	60	2	25	114	104	196	1.20e-12	62.4
MS.gene42302.t1	MTR_4g088905	34.146	82	54	0	32	113	25	106	7.33e-12	60.8
MS.gene42302.t1	MTR_2g079340	35.135	74	47	1	27	99	51	124	1.96e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42302.t1	AT3G51030	72.321	112	31	0	1	112	1	112	4.04e-60	180
MS.gene42302.t1	AT1G45145	59.459	111	45	0	3	113	2	112	3.54e-48	150
MS.gene42302.t1	AT1G19730	62.832	113	41	1	1	112	1	113	4.44e-47	147
MS.gene42302.t1	AT5G42980	62.500	112	42	0	3	114	2	113	1.10e-46	146
MS.gene42302.t1	AT5G39950	44.037	109	61	0	3	111	22	130	7.40e-32	109
MS.gene42302.t1	AT3G08710	41.905	105	61	0	6	110	23	127	7.91e-29	102
MS.gene42302.t1	AT3G08710	41.905	105	61	0	6	110	23	127	7.91e-29	102
MS.gene42302.t1	AT3G08710	41.905	105	61	0	6	110	23	127	7.91e-29	102
MS.gene42302.t1	AT3G56420	41.346	104	61	0	3	106	37	140	1.13e-28	102
MS.gene42302.t1	AT3G56420	41.346	104	61	0	3	106	37	140	1.13e-28	102
MS.gene42302.t1	AT3G56420	41.346	104	61	0	3	106	37	140	1.13e-28	102
MS.gene42302.t1	AT3G17880	38.596	114	70	0	2	115	259	372	3.04e-27	103
MS.gene42302.t1	AT3G17880	38.596	114	70	0	2	115	266	379	3.07e-27	103
MS.gene42302.t1	AT1G59730	40.741	108	64	0	5	112	20	127	3.82e-27	97.4
MS.gene42302.t1	AT2G40790	42.157	102	59	0	5	106	39	140	1.92e-25	94.0
MS.gene42302.t1	AT2G40790	42.157	102	59	0	5	106	39	140	1.92e-25	94.0
MS.gene42302.t1	AT1G69880	36.111	108	69	0	8	115	39	146	3.11e-24	90.5
MS.gene42302.t1	AT1G11530	39.604	101	61	0	6	106	2	102	3.16e-22	84.7
MS.gene42302.t1	AT2G35010	37.383	107	65	1	2	106	80	186	1.16e-18	77.4
MS.gene42302.t1	AT2G35010	37.383	107	65	1	2	106	80	186	1.16e-18	77.4
MS.gene42302.t1	AT1G43560	35.556	90	54	2	12	100	63	149	6.70e-18	74.7
MS.gene42302.t1	AT1G76760	36.842	76	47	1	26	100	79	154	2.32e-17	73.6
MS.gene42302.t1	AT5G16400	42.683	82	46	1	29	109	98	179	4.05e-17	73.2
MS.gene42302.t1	AT3G02730	39.048	105	60	3	6	109	68	169	2.26e-16	71.2
MS.gene42302.t1	AT1G31020	41.250	80	45	1	32	109	75	154	1.06e-15	68.9
MS.gene42302.t1	AT4G26160	36.782	87	52	2	29	112	114	200	1.04e-14	67.8
MS.gene42302.t1	AT1G07700	34.286	105	61	2	21	117	100	204	2.32e-13	63.9
MS.gene42302.t1	AT1G07700	34.286	105	61	2	21	117	100	204	2.32e-13	63.9
MS.gene42302.t1	AT1G07700	34.286	105	61	2	21	117	100	204	2.32e-13	63.9
MS.gene42302.t1	AT3G15360	34.940	83	52	2	31	111	107	189	3.46e-13	63.2
MS.gene42302.t1	AT1G07700	34.286	105	61	2	21	117	113	217	5.32e-13	63.2
MS.gene42302.t1	AT1G03680	36.145	83	51	2	31	111	95	177	7.06e-13	62.0
MS.gene42302.t1	AT5G61440	33.333	93	59	2	25	114	102	194	1.76e-12	62.0
MS.gene42302.t1	AT4G32580	30.851	94	65	0	18	111	11	104	4.22e-12	59.7
MS.gene42302.t1	AT5G61440	36.986	73	44	1	25	95	102	174	6.71e-12	59.7
MS.gene42302.t1	AT4G03520	30.357	112	73	3	2	111	75	183	1.16e-11	58.9
MS.gene42302.t1	AT3G53220	29.545	88	60	1	26	113	41	126	1.17e-11	57.8
MS.gene42302.t1	AT4G04950	31.250	96	66	0	18	113	11	106	2.98e-11	59.3
MS.gene42302.t1	AT4G29670	30.631	111	72	4	7	114	104	212	3.88e-11	58.2

Find 38 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAGCAATCTCTGCCAAAAT+TGG	0.176845	3.2:+89672273	None:intergenic
CCGTTTCATTGCCCCAATTT+TGG	0.206429	3.2:-89672286	MS.gene42302:CDS
GTAATTACGAACCAGTTTCT+TGG	0.284749	3.2:+89673477	None:intergenic
TAGTTGATTTCACCGCTTCT+TGG	0.325324	3.2:-89672320	MS.gene42302:CDS
TAGCAATCTCTGCCAAAATT+GGG	0.369203	3.2:+89672274	None:intergenic
ACCTTGAGGAAGGTGACATT+GGG	0.411403	3.2:+89672243	None:intergenic
GAACACCTCGAGAAGGGAAA+TGG	0.415243	3.2:-89673502	MS.gene42302:CDS
GGGAAATGGATCCAAGAAAC+TGG	0.447832	3.2:-89673488	MS.gene42302:intron
CCAAAATTGGGGCAATGAAA+CGG	0.448396	3.2:+89672286	None:intergenic
ACATTCCTGTTCTTGAAAGA+AGG	0.467029	3.2:-89672044	MS.gene42302:CDS
ATGCAACTACTGATGCTTGA+AGG	0.470064	3.2:-89671959	None:intergenic
TTCAGACTGTTGCTGAGGAG+TGG	0.473458	3.2:-89672085	MS.gene42302:intron
TCAGACTGTTGCTGAGGAGT+GGG	0.483366	3.2:-89672084	MS.gene42302:intron
CAAGGTTGTTGGTGCTCAGA+AGG	0.494072	3.2:-89672009	MS.gene42302:CDS
AACCTTGAGGAAGGTGACAT+TGG	0.503335	3.2:+89672242	None:intergenic
GAGTTCACACTGTGGAGGCT+TGG	0.518585	3.2:-89673528	MS.gene42302:CDS
TCACACTGTGGAGGCTTGGA+AGG	0.528778	3.2:-89673524	MS.gene42302:CDS
TCTTTCAAGAACAGGAATGT+TGG	0.532437	3.2:+89672047	None:intergenic
GATTTCACCGCTTCTTGGTG+TGG	0.537233	3.2:-89672315	MS.gene42302:CDS
GGTTGATGTTGATGAATTGA+AGG	0.538032	3.2:-89672223	MS.gene42302:intron
AAACTTGTGGACAAGGTTGT+TGG	0.545501	3.2:-89672020	MS.gene42302:CDS
TGGATCCATTTCCCTTCTCG+AGG	0.549771	3.2:+89673497	None:intergenic
AGCAATCTCTGCCAAAATTG+GGG	0.564435	3.2:+89672275	None:intergenic
GCAGAAGAGGGACAAGTGAT+CGG	0.567124	3.2:-89673550	MS.gene42302:CDS
ATCTCTTCAGACTGTTGCTG+AGG	0.574853	3.2:-89672090	MS.gene42302:intron
GCCCAATGTCACCTTCCTCA+AGG	0.579615	3.2:-89672244	MS.gene42302:CDS
AGAAGGAAAACTTGTGGACA+AGG	0.582680	3.2:-89672027	MS.gene42302:CDS
TTGGGGCAATGAAACGGCAC+GGG	0.587094	3.2:+89672292	None:intergenic
TTGGAAGGAACACCTCGAGA+AGG	0.587167	3.2:-89673509	MS.gene42302:CDS
ATCAACATCAACCTTGAGGA+AGG	0.593122	3.2:+89672233	None:intergenic
TGGAAGGAACACCTCGAGAA+GGG	0.609279	3.2:-89673508	MS.gene42302:CDS
ATTGGGGCAATGAAACGGCA+CGG	0.611827	3.2:+89672291	None:intergenic
GCACGGGCCACACCAAGAAG+CGG	0.614346	3.2:+89672308	None:intergenic
CTTGAAAGAAGGAAAACTTG+TGG	0.616269	3.2:-89672033	MS.gene42302:CDS
ATTCATCAACATCAACCTTG+AGG	0.626748	3.2:+89672229	None:intergenic
GATCACTTGTCCCTCTTCTG+CGG	0.658362	3.2:+89673552	None:intergenic
GATCGGAGTTCACACTGTGG+AGG	0.679680	3.2:-89673533	MS.gene42302:CDS
AGTGATCGGAGTTCACACTG+TGG	0.799746	3.2:-89673536	MS.gene42302:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCATATTAGTATAAATAA+GGG	-	chr3.2:89672654-89672673	MS.gene42302:intron	10.0%
!!!	TTTTCATATTAGTATAAATA+AGG	-	chr3.2:89672653-89672672	MS.gene42302:intron	10.0%
!!	TCTAATATTAGTACAAATAA+GGG	-	chr3.2:89672801-89672820	MS.gene42302:intron	15.0%
!!!	ACTATTGATTATTATTATTC+TGG	-	chr3.2:89672165-89672184	MS.gene42302:intron	15.0%
!!	AAAACAATAATAATGTCATG+TGG	+	chr3.2:89673339-89673358	None:intergenic	20.0%
!!	GTCTAATATTAGTACAAATA+AGG	-	chr3.2:89672800-89672819	MS.gene42302:intron	20.0%
!!	TAAAACAAAGATTTGACATA+AGG	+	chr3.2:89673030-89673049	None:intergenic	20.0%
!!!	ATGTTTTAAGATAAAGAGAA+CGG	+	chr3.2:89672880-89672899	None:intergenic	20.0%
!!!	CAATGAATAACTTATGTTTT+TGG	+	chr3.2:89672457-89672476	None:intergenic	20.0%
!!!	GTGAAAAATCAAGAATTTTA+AGG	+	chr3.2:89673124-89673143	None:intergenic	20.0%
!!!	TGAACTTGTTTAAAATTAAG+TGG	+	chr3.2:89673146-89673165	None:intergenic	20.0%
!!!	TGTTGAAATTTTAAGAAATG+AGG	-	chr3.2:89672570-89672589	MS.gene42302:intron	20.0%
!!!	TTCAGCAAATTACTTTTTAA+CGG	-	chr3.2:89672932-89672951	MS.gene42302:intron	20.0%
!!!	TTGATACTTAGTTTAGAATT+TGG	-	chr3.2:89672776-89672795	MS.gene42302:intron	20.0%
!	AAAAGAAATCGTAAAGCTTT+AGG	+	chr3.2:89673373-89673392	None:intergenic	25.0%
!	AAATAATGATTGAGTGCATA+GGG	-	chr3.2:89672230-89672249	MS.gene42302:CDS	25.0%
!	ACTTAATCTTCAATGATTAC+TGG	-	chr3.2:89672986-89673005	MS.gene42302:intron	25.0%
!	ATTTAGTGTCATCTAATTGA+AGG	+	chr3.2:89672214-89672233	None:intergenic	25.0%
!	GAGCAAAAGAATGTTTAAAA+TGG	-	chr3.2:89672357-89672376	MS.gene42302:intron	25.0%
!	TAAATAATGATTGAGTGCAT+AGG	-	chr3.2:89672229-89672248	MS.gene42302:CDS	25.0%
!	TAAGTTAATTGCAGAATTCT+TGG	+	chr3.2:89673403-89673422	None:intergenic	25.0%
!!	ATTCTGTTTGTCAACTTTTT+CGG	-	chr3.2:89672387-89672406	MS.gene42302:intron	25.0%
!!	TTTTCCATTTCCTTAGTTTA+GGG	-	chr3.2:89672114-89672133	MS.gene42302:intron	25.0%
!!!	ATTTAAGGGTTTTAAGTTAG+AGG	-	chr3.2:89672526-89672545	MS.gene42302:intron	25.0%
	AAGTTCAAGCTCAATATTGT+TGG	-	chr3.2:89672596-89672615	MS.gene42302:intron	30.0%
	AATCACAAATTATACCGAAG+AGG	+	chr3.2:89673101-89673120	None:intergenic	30.0%
	AATCATTGAAGATTAAGTGC+AGG	+	chr3.2:89672984-89673003	None:intergenic	30.0%
	ACAATTAGATCCCTAAACTA+AGG	+	chr3.2:89672127-89672146	None:intergenic	30.0%
	AGTTCAAGCTCAATATTGTT+GGG	-	chr3.2:89672597-89672616	MS.gene42302:intron	30.0%
	AGTTTAGGGATCTAATTGTT+AGG	-	chr3.2:89672128-89672147	MS.gene42302:intron	30.0%
	ATTGAATATTGTAGCCTCTT+CGG	-	chr3.2:89673084-89673103	MS.gene42302:intron	30.0%
	ATTTCATAGCTTAGAACTTC+GGG	-	chr3.2:89672281-89672300	MS.gene42302:CDS	30.0%
	CATTTCATAGCTTAGAACTT+CGG	-	chr3.2:89672280-89672299	MS.gene42302:CDS	30.0%
	GAAATATTGTAAGTTCAGGT+TGG	+	chr3.2:89672962-89672981	None:intergenic	30.0%
	GTTTAGGGATCTAATTGTTA+GGG	-	chr3.2:89672129-89672148	MS.gene42302:intron	30.0%
	TCGAAATTAAAACTGCACTA+GGG	-	chr3.2:89672091-89672110	MS.gene42302:intron	30.0%
	TTCGAAATTAAAACTGCACT+AGG	-	chr3.2:89672090-89672109	MS.gene42302:intron	30.0%
!	AGTTGATATGAAATAACAGC+TGG	+	chr3.2:89672913-89672932	None:intergenic	30.0%
!	GTTTTCCATTTCCTTAGTTT+AGG	-	chr3.2:89672113-89672132	MS.gene42302:intron	30.0%
!!	CAAAAAGTGTTGGGATTTAA+GGG	-	chr3.2:89672512-89672531	MS.gene42302:intron	30.0%
	ACATTCCTGTTCTTGAAAGA+AGG	-	chr3.2:89673474-89673493	MS.gene42302:intron	35.0%
	AGATCCCTAAACTAAGGAAA+TGG	+	chr3.2:89672121-89672140	None:intergenic	35.0%
	ATAACAACAACCAAGCCTTA+TGG	+	chr3.2:89672739-89672758	None:intergenic	35.0%
	ATTCATCAACATCAACCTTG+AGG	+	chr3.2:89673292-89673311	None:intergenic	35.0%
	CTTGAAAGAAGGAAAACTTG+TGG	-	chr3.2:89673485-89673504	MS.gene42302:intron	35.0%
	GAGACAAAAATTGCGCATTA+GGG	-	chr3.2:89672619-89672638	MS.gene42302:intron	35.0%
	GCAGGAAATATTGTAAGTTC+AGG	+	chr3.2:89672966-89672985	None:intergenic	35.0%
	GTAATTACGAACCAGTTTCT+TGG	+	chr3.2:89672044-89672063	None:intergenic	35.0%
	TAGCAATCTCTGCCAAAATT+GGG	+	chr3.2:89673247-89673266	None:intergenic	35.0%
	TATTTGTTCTTAGCCCCATA+AGG	-	chr3.2:89672721-89672740	MS.gene42302:intron	35.0%
	TCTTTCAAGAACAGGAATGT+TGG	+	chr3.2:89673474-89673493	None:intergenic	35.0%
	TTAGCAATCTCTGCCAAAAT+TGG	+	chr3.2:89673248-89673267	None:intergenic	35.0%
!	CCTTAAATCCCAACACTTTT+TGG	+	chr3.2:89672514-89672533	None:intergenic	35.0%
!	GGTTGATGTTGATGAATTGA+AGG	-	chr3.2:89673295-89673314	MS.gene42302:intron	35.0%
!	GTTTTCCTTCTTTCAAGAAC+AGG	+	chr3.2:89673482-89673501	None:intergenic	35.0%
!	TAACAACAACCAAGCCTTAT+GGG	+	chr3.2:89672738-89672757	None:intergenic	35.0%
!	TAACAGTGACCAAAAAGTGT+TGG	-	chr3.2:89672502-89672521	MS.gene42302:intron	35.0%
!!	AACAGTGACCAAAAAGTGTT+GGG	-	chr3.2:89672503-89672522	MS.gene42302:intron	35.0%
!!	CCAAAAAGTGTTGGGATTTA+AGG	-	chr3.2:89672511-89672530	MS.gene42302:intron	35.0%
	AAACTTGTGGACAAGGTTGT+TGG	-	chr3.2:89673498-89673517	MS.gene42302:CDS	40.0%
	AGAAGGAAAACTTGTGGACA+AGG	-	chr3.2:89673491-89673510	MS.gene42302:CDS	40.0%
	AGCAATCTCTGCCAAAATTG+GGG	+	chr3.2:89673246-89673265	None:intergenic	40.0%
	ATCAACATCAACCTTGAGGA+AGG	+	chr3.2:89673288-89673307	None:intergenic	40.0%
	CATTGAACAACTCATGCATC+TGG	-	chr3.2:89672412-89672431	MS.gene42302:intron	40.0%
	CCAAAATTGGGGCAATGAAA+CGG	+	chr3.2:89673235-89673254	None:intergenic	40.0%
	GGAGACAAAAATTGCGCATT+AGG	-	chr3.2:89672618-89672637	MS.gene42302:intron	40.0%
!	AACAACAACCAAGCCTTATG+GGG	+	chr3.2:89672737-89672756	None:intergenic	40.0%
!	AGAACTTCGGGTTTAGAAGA+TGG	-	chr3.2:89672293-89672312	MS.gene42302:CDS	40.0%
!	TAGTTGATTTCACCGCTTCT+TGG	-	chr3.2:89673198-89673217	MS.gene42302:intron	40.0%
	AACCTTGAGGAAGGTGACAT+TGG	+	chr3.2:89673279-89673298	None:intergenic	45.0%
	ACCTTGAGGAAGGTGACATT+GGG	+	chr3.2:89673278-89673297	None:intergenic	45.0%
	ATCTCTTCAGACTGTTGCTG+AGG	-	chr3.2:89673428-89673447	MS.gene42302:intron	45.0%
	GGGAAATGGATCCAAGAAAC+TGG	-	chr3.2:89672030-89672049	MS.gene42302:CDS	45.0%
	GGGTTTAGAAGATGGAGAGA+GGG	-	chr3.2:89672301-89672320	MS.gene42302:CDS	45.0%
!	CCGTTTCATTGCCCCAATTT+TGG	-	chr3.2:89673232-89673251	MS.gene42302:intron	45.0%
	AGTGATCGGAGTTCACACTG+TGG	-	chr3.2:89671982-89672001	MS.gene42302:CDS	50.0%
	ATTGGGGCAATGAAACGGCA+CGG	+	chr3.2:89673230-89673249	None:intergenic	50.0%
	CGGGTTTAGAAGATGGAGAG+AGG	-	chr3.2:89672300-89672319	MS.gene42302:CDS	50.0%
	GAACACCTCGAGAAGGGAAA+TGG	-	chr3.2:89672016-89672035	MS.gene42302:CDS	50.0%
	GATCACTTGTCCCTCTTCTG+CGG	+	chr3.2:89671969-89671988	None:intergenic	50.0%
	GATTTCACCGCTTCTTGGTG+TGG	-	chr3.2:89673203-89673222	MS.gene42302:intron	50.0%
	GCAGAAGAGGGACAAGTGAT+CGG	-	chr3.2:89671968-89671987	MS.gene42302:CDS	50.0%
	GTTCTTAGCCCCATAAGGCT+TGG	-	chr3.2:89672726-89672745	MS.gene42302:intron	50.0%
	TCAGACTGTTGCTGAGGAGT+GGG	-	chr3.2:89673434-89673453	MS.gene42302:intron	50.0%
	TGGAAGGAACACCTCGAGAA+GGG	-	chr3.2:89672010-89672029	MS.gene42302:CDS	50.0%
	TGGATCCATTTCCCTTCTCG+AGG	+	chr3.2:89672024-89672043	None:intergenic	50.0%
	TTCAGACTGTTGCTGAGGAG+TGG	-	chr3.2:89673433-89673452	MS.gene42302:intron	50.0%
	TTGGAAGGAACACCTCGAGA+AGG	-	chr3.2:89672009-89672028	MS.gene42302:CDS	50.0%
!	CAAGGTTGTTGGTGCTCAGA+AGG	-	chr3.2:89673509-89673528	MS.gene42302:CDS	50.0%
	GAGTTCACACTGTGGAGGCT+TGG	-	chr3.2:89671990-89672009	MS.gene42302:CDS	55.0%
	GATCGGAGTTCACACTGTGG+AGG	-	chr3.2:89671985-89672004	MS.gene42302:CDS	55.0%
	GCCCAATGTCACCTTCCTCA+AGG	-	chr3.2:89673274-89673293	MS.gene42302:intron	55.0%
	TCACACTGTGGAGGCTTGGA+AGG	-	chr3.2:89671994-89672013	MS.gene42302:CDS	55.0%
	TTGGGGCAATGAAACGGCAC+GGG	+	chr3.2:89673229-89673248	None:intergenic	55.0%
	GCACGGGCCACACCAAGAAG+CGG	+	chr3.2:89673213-89673232	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	89671962	89673578	89671962	ID=MS.gene42302
chr3.2	mRNA	89671962	89673578	89671962	ID=MS.gene42302.t1;Parent=MS.gene42302
chr3.2	exon	89673489	89673578	89673489	ID=MS.gene42302.t1.exon1;Parent=MS.gene42302.t1
chr3.2	CDS	89673489	89673578	89673489	ID=cds.MS.gene42302.t1;Parent=MS.gene42302.t1
chr3.2	exon	89672224	89672346	89672224	ID=MS.gene42302.t1.exon2;Parent=MS.gene42302.t1
chr3.2	CDS	89672224	89672346	89672224	ID=cds.MS.gene42302.t1;Parent=MS.gene42302.t1
chr3.2	exon	89671962	89672102	89671962	ID=MS.gene42302.t1.exon3;Parent=MS.gene42302.t1
chr3.2	CDS	89671962	89672102	89671962	ID=cds.MS.gene42302.t1;Parent=MS.gene42302.t1

Gene Sequence

>MS.gene42302

ATGGCCGCAGAAGAGGGACAAGTGATCGGAGTTCACACTGTGGAGGCTTGGAAGGAACACCTCGAGAAGGGAAATGGATCCAAGAAACTGGTTCGTAATTACTCTTTCTTTTCTTTTTACGTTTTTAATTCGAAATTAAAACTGCACTAGGGTTTTCCATTTCCTTAGTTTAGGGATCTAATTGTTAGGGATTTATCAATTTTACTATTGATTATTATTATTCTGGTATTGTTGATGTGTGAATTTAATCCTTCAATTAGATGACACTAAATAATGATTGAGTGCATAGGGTTTAAATTTGATATGAAACGATTTGAACATTTCATAGCTTAGAACTTCGGGTTTAGAAGATGGAGAGAGGGTTTGAGATTATTTTTTTATGAATGAAATATTTTGAGCAAAAGAATGTTTAAAATGGTTAATCTATTCTGTTTGTCAACTTTTTCGGTTCATTGAACAACTCATGCATCTGGTCAATATTAGTATTACTGACCAAAAACATAAGTTATTCATTGAATCTAAAAAGTGATTTTTTGCTCATAACAGTGACCAAAAAGTGTTGGGATTTAAGGGTTTTAAGTTAGAGGAAACTGATGATATGATTTGATTGTTGAAATTTTAAGAAATGAGGATTAAGTTCAAGCTCAATATTGTTGGGAGACAAAAATTGCGCATTAGGGTAATTTGTTAGTTTTCATATTAGTATAAATAAGGGCTAATGCTTTGTCTAAGTTAATTTTGATTCTGTTATTTATTCAATATTTGTTCTTAGCCCCATAAGGCTTGGTTGTTGTTATTGTAATTTGTTCTTAGTTTGATACTTAGTTTAGAATTTGGAGTCTAATATTAGTACAAATAAGGGTCAGTGCTTCGTCTTTTGTATTGTTTGACAATTTGAATTGTTCTGTTCATTTTCCGTTCTCTTTATCTTAAAACATTTTCAACAAACCAGCTGTTATTTCATATCAACTTCAGCAAATTACTTTTTAACGGTAAACCAACCTGAACTTACAATATTTCCTGCACTTAATCTTCAATGATTACTGGCATGCAATCTTCATCTAACCTTATGTCAAATCTTTGTTTTAGAACTTTTATTAGTTTTGTGTTTTAACTCTTGTTATTGAATATTGTAGCCTCTTCGGTATAATTTGTGATTCCTTAAAATTCTTGATTTTTCACCACTTAATTTTAAACAAGTTCAAAGTACTGAAAAGAAGTCACATTGACAGATTGTAGTTGATTTCACCGCTTCTTGGTGTGGCCCGTGCCGTTTCATTGCCCCAATTTTGGCAGAGATTGCTAAAAAGCTGCCCAATGTCACCTTCCTCAAGGTTGATGTTGATGAATTGAAGGTGAGCGTATCAAAATTTACCACATGACATTATTATTGTTTTTAATCTTAAGTCCTAAAGCTTTACGATTTCTTTTTCTTTAACCAAGAATTCTGCAATTAACTTACATTAATCTCTTCAGACTGTTGCTGAGGAGTGGGCAGTTGATGCTATGCCAACATTCCTGTTCTTGAAAGAAGGAAAACTTGTGGACAAGGTTGTTGGTGCTCAGAAGGAGCAGCTGCAAGCAGCAATAACAAAGCATGCAACTACTGATGCTTGA

Protein sequence

>MS.gene42302.t1

MAAEEGQVIGVHTVEAWKEHLEKGNGSKKLIVVDFTASWCGPCRFIAPILAEIAKKLPNVTFLKVDVDELKTVAEEWAVDAMPTFLFLKEGKLVDKVVGAQKEQLQAAITKHATTDA