AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003150.t1 MTR_2g027390 96.759 432 10 2 1 428 1 432 0.0 842
MS.gene003150.t1 MTR_7g017500 39.474 114 66 3 93 205 149 260 1.61e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003150.t1 AT5G47790 58.508 429 116 8 1 428 1 368 6.70e-162 461
MS.gene003150.t1 AT5G38840 39.640 111 64 3 96 205 93 201 3.82e-19 90.5

Find 125 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGTATATGTAATTGATT+TGG 0.192768 2.1:-63172903 MS.gene003150:CDS
TTGGAACCGTTCTCTGTTAA+TGG 0.193902 2.1:-63173707 MS.gene003150:CDS
GGTGCTAGATAGGATTAATT+TGG 0.279458 2.1:-63173408 MS.gene003150:CDS
AGAAGATGAGAGTTTCATTC+AGG 0.291478 2.1:-63172541 MS.gene003150:CDS
AGTGGAGGCGGCTCCGTTGT+TGG 0.292771 2.1:-63173546 MS.gene003150:CDS
GTGGAGGCGGCTCCGTTGTT+GGG 0.315269 2.1:-63173545 MS.gene003150:CDS
GTTTAAGAAAGCCGAGAGTT+TGG 0.325196 2.1:-63173726 MS.gene003150:CDS
ACTACCAAGCTCAGTGGATT+TGG 0.351010 2.1:+63172619 None:intergenic
GGGATTTACGATGACCTATA+TGG 0.356648 2.1:-63172272 MS.gene003150:CDS
GAGGACTGCCCTTTCCCCTT+TGG 0.357778 2.1:+63172380 None:intergenic
TTTCATTCAGGGATCAGGTT+GGG 0.361537 2.1:-63172529 MS.gene003150:CDS
AGTGTATATGTAATTGATTT+GGG 0.362845 2.1:-63172902 MS.gene003150:CDS
GAGGATGATGATGATTTGTT+TGG 0.370753 2.1:-63172119 MS.gene003150:CDS
CCCTCGTCCTTCACCACCCA+CGG 0.373388 2.1:-63172744 MS.gene003150:CDS
CTTCCTTCCTTAACACCAAC+TGG 0.386824 2.1:+63172446 None:intergenic
GAAGAACATCTGGTCTTGAT+AGG 0.392084 2.1:-63173748 MS.gene003150:CDS
ACCTGGTCCAGTTGGTGTTA+AGG 0.396500 2.1:-63172453 MS.gene003150:CDS
TTCATTCAGGGATCAGGTTG+GGG 0.397217 2.1:-63172528 MS.gene003150:CDS
CGCGGCTCAATCGCCCAATC+TGG 0.397896 2.1:+63173470 None:intergenic
TGTAATTTGAAGAGAATGTA+TGG 0.407152 2.1:-63173770 None:intergenic
GGAGAGTTAGTTGAGGTTGT+TGG 0.408959 2.1:-63172506 MS.gene003150:CDS
TAAGGTAGTTGGTCATTCTT+CGG 0.414880 2.1:-63173648 MS.gene003150:CDS
TCTTAGCAGCTCTTTCTGAT+TGG 0.422101 2.1:+63172570 None:intergenic
TCCGATGGGTCAGGAGGTGG+TGG 0.423621 2.1:+63172710 None:intergenic
TCTCCATTCTCCTTAGCTGC+TGG 0.430224 2.1:+63172182 None:intergenic
GTTGTTGGGGCAGAATCAAC+AGG 0.433225 2.1:-63173531 MS.gene003150:CDS
GAGAGTTTCATTCAGGGATC+AGG 0.440722 2.1:-63172534 MS.gene003150:CDS
AGGATGGTCAGGTGCTAGAT+AGG 0.444081 2.1:-63173418 MS.gene003150:CDS
GATGTGGCAGCCACCAGATT+GGG 0.444291 2.1:-63173483 MS.gene003150:CDS
AATACGCTGCTGAATCGTTA+TGG 0.447922 2.1:-63172665 MS.gene003150:CDS
CAAGCACAAAATCACAAGTC+TGG 0.448208 2.1:+63173354 None:intergenic
GCCTCTTCATCCGATGGGTC+AGG 0.453710 2.1:+63172701 None:intergenic
AGAATGTATGGAAGAACATC+TGG 0.453804 2.1:-63173758 MS.gene003150:CDS
CTGTAATTCCAAAGGGGAAA+GGG 0.464451 2.1:-63172388 MS.gene003150:CDS
CAAACTACTGTAATTCCAAA+GGG 0.471274 2.1:-63172395 MS.gene003150:CDS
AAACTCAACAGGTGAATCCT+TGG 0.474394 2.1:+63172841 None:intergenic
CGATGTGGCAGCCACCAGAT+TGG 0.476461 2.1:-63173484 MS.gene003150:CDS
TCCTTAACACCAACTGGACC+AGG 0.478092 2.1:+63172452 None:intergenic
GCGCCAGCAGCTAAGGAGAA+TGG 0.478653 2.1:-63172185 MS.gene003150:CDS
AATCAACAGGCAACGCAGAT+TGG 0.478731 2.1:-63173518 MS.gene003150:CDS
CCTCGTCCTTCACCACCCAC+GGG 0.483891 2.1:-63172743 MS.gene003150:CDS
TGTCCCACTTCAAACTCAAC+AGG 0.484199 2.1:+63172830 None:intergenic
CTGTCAAAGTTGGATCAGCC+TGG 0.486875 2.1:-63172238 MS.gene003150:CDS
TTGATCCCCGTGGGTGGTGA+AGG 0.486979 2.1:+63172737 None:intergenic
AGGATGATGATGATTTGTTT+GGG 0.488049 2.1:-63172118 MS.gene003150:CDS
TCCTCGTAATCAGCAATGCT+TGG 0.489223 2.1:+63172137 None:intergenic
GAATCATTATCTGTCAAAGT+TGG 0.489351 2.1:-63172248 MS.gene003150:CDS
TGTACAGAATTCTTCGACTG+TGG 0.489814 2.1:+63173614 None:intergenic
CAGATAATGATTCTCCATAT+AGG 0.494590 2.1:+63172258 None:intergenic
GGAAGTTATGAAGGATGGTC+AGG 0.495075 2.1:-63173429 MS.gene003150:CDS
TGGAGGCGGCTCCGTTGTTG+GGG 0.498085 2.1:-63173544 MS.gene003150:CDS
TTGGGCGATTGAGCCGCGAC+CGG 0.501004 2.1:-63173465 MS.gene003150:CDS
GGAAAGGGCAGTCCTCTGCT+AGG 0.502686 2.1:-63172373 MS.gene003150:CDS
TACTTGGAAGTTATGAAGGA+TGG 0.503632 2.1:-63173434 MS.gene003150:CDS
GAGGTAGATTCATCCCAAAA+AGG 0.506021 2.1:-63172350 MS.gene003150:CDS
TTCTCAGAAAGGTGTGGGAG+TGG 0.506673 2.1:-63173564 MS.gene003150:CDS
TGTTGCTCAGTCTTCTAGTA+AGG 0.506725 2.1:-63173666 MS.gene003150:CDS
GAAGATGAGAGTTTCATTCA+GGG 0.508142 2.1:-63172540 MS.gene003150:CDS
GAAAGGTGTGGGAGTGGAGG+CGG 0.508188 2.1:-63173558 MS.gene003150:CDS
GTTAAGGAAGGAAGTCTAGT+TGG 0.508857 2.1:-63172437 MS.gene003150:CDS
TGGGCGATTGAGCCGCGACC+GGG 0.511260 2.1:-63173464 MS.gene003150:CDS
CAGGCAACGCAGATTGGTGG+AGG 0.514066 2.1:-63173512 MS.gene003150:CDS
TAGTTGGTCATTCTTCGGCT+TGG 0.516977 2.1:-63173643 MS.gene003150:CDS
TGAACGAGCGCCAGCAGCTA+AGG 0.523991 2.1:-63172192 MS.gene003150:CDS
CATCAACATGGTTCTCAGAA+AGG 0.526028 2.1:-63173575 MS.gene003150:CDS
TCATCCGATGGGTCAGGAGG+TGG 0.527608 2.1:+63172707 None:intergenic
CAGTCTTCTAGTAAGGTAGT+TGG 0.528464 2.1:-63173659 MS.gene003150:CDS
GCTAAGGAGAATGGAGAAAG+TGG 0.536680 2.1:-63172176 MS.gene003150:CDS
CTCTCGCCAACATGCTGCGG+TGG 0.540409 2.1:-63173318 MS.gene003150:CDS
GGCTCAATCGCCCAATCTGG+TGG 0.540495 2.1:+63173473 None:intergenic
CCCGTGGGTGGTGAAGGACG+AGG 0.543398 2.1:+63172743 None:intergenic
TCCTGACCCATCGGATGAAG+AGG 0.544867 2.1:-63172702 MS.gene003150:CDS
TCTTAATATGTATAATCTCG+TGG 0.545734 2.1:+63172787 None:intergenic
GAGCTTGGTAGTGCAACAAA+TGG 0.548432 2.1:-63172608 MS.gene003150:CDS
CCCACCACCTCCTGACCCAT+CGG 0.549380 2.1:-63172711 MS.gene003150:CDS
CAACAGGCAACGCAGATTGG+TGG 0.550219 2.1:-63173515 MS.gene003150:CDS
GTTTCATTCAGGGATCAGGT+TGG 0.560524 2.1:-63172530 MS.gene003150:CDS
GAAAGGGCAGTCCTCTGCTA+GGG 0.561223 2.1:-63172372 MS.gene003150:CDS
GCTCGTTCACCACTACTGAC+AGG 0.562972 2.1:+63172206 None:intergenic
CAAACGCTCATTTGCAACAA+AGG 0.565573 2.1:+63172865 None:intergenic
TTCACCTGTTGAGTTTGAAG+TGG 0.567231 2.1:-63172834 MS.gene003150:CDS
ACAACAGCCTCTTCATCCGA+TGG 0.568113 2.1:+63172695 None:intergenic
GGGAAATTGATCCCCGTGGG+TGG 0.570676 2.1:+63172731 None:intergenic
TCACCTGTTGAGTTTGAAGT+GGG 0.574165 2.1:-63172833 MS.gene003150:CDS
GAGGTTGTTGGAATTTCAGA+TGG 0.576473 2.1:-63172494 MS.gene003150:CDS
CATGGTTCTCAGAAAGGTGT+GGG 0.580915 2.1:-63173569 MS.gene003150:CDS
TGTCTCTCGCCAACATGCTG+CGG 0.581927 2.1:-63173321 MS.gene003150:CDS
ACAAACTACTGTAATTCCAA+AGG 0.585279 2.1:-63172396 MS.gene003150:CDS
GAATTACCATTAACAGAGAA+CGG 0.587204 2.1:+63173701 None:intergenic
TCTAACCTTCCGTTCTTGTG+AGG 0.588526 2.1:+63173293 None:intergenic
ACTGTAATTCCAAAGGGGAA+AGG 0.588891 2.1:-63172389 MS.gene003150:CDS
AGAGAACGGTTCCAAACTCT+CGG 0.589404 2.1:+63173715 None:intergenic
TGTCAAAGTTGGATCAGCCT+GGG 0.595464 2.1:-63172237 MS.gene003150:CDS
AGGGCAGTCCTCTGCTAGGG+AGG 0.602420 2.1:-63172369 MS.gene003150:CDS
GAGGAACCACCGCAGCATGT+TGG 0.602912 2.1:+63173312 None:intergenic
TGGTGGGAAATTGATCCCCG+TGG 0.605958 2.1:+63172727 None:intergenic
TCAGAAAGGTGTGGGAGTGG+AGG 0.607307 2.1:-63173561 MS.gene003150:CDS
TGCAAATGAGCGTTTGACCA+AGG 0.607826 2.1:-63172858 MS.gene003150:CDS
GGTCCAGTTGGTGTTAAGGA+AGG 0.608986 2.1:-63172449 MS.gene003150:CDS
GAAACAGAACCTGGTCCAGT+TGG 0.609238 2.1:-63172461 MS.gene003150:CDS
ACATGGTTCTCAGAAAGGTG+TGG 0.612081 2.1:-63173570 MS.gene003150:CDS
GTGTCCAAATCCACTGAGCT+TGG 0.614575 2.1:-63172623 MS.gene003150:CDS
GCGGTGGTTCCTCACAAGAA+CGG 0.615525 2.1:-63173302 MS.gene003150:CDS
ACTGACAGGTGAGTATGCCC+AGG 0.616123 2.1:+63172220 None:intergenic
CAACAGCCTCTTCATCCGAT+GGG 0.619090 2.1:+63172696 None:intergenic
TCATTCAGGGATCAGGTTGG+GGG 0.620615 2.1:-63172527 MS.gene003150:CDS
TGTTGATTCTGCCCCAACAA+CGG 0.623282 2.1:+63173533 None:intergenic
GCATACTCACCTGTCAGTAG+TGG 0.625393 2.1:-63172215 MS.gene003150:CDS
TGAATCTACCTCCCTAGCAG+AGG 0.627223 2.1:+63172361 None:intergenic
CCGTGGGTGGTGAAGGACGA+GGG 0.627786 2.1:+63172744 None:intergenic
TCCAAGCATTGCTGATTACG+AGG 0.635210 2.1:-63172138 MS.gene003150:CDS
TTGGTGGAGGGCAGTCGATG+TGG 0.637100 2.1:-63173499 MS.gene003150:CDS
ACAGAATTCTTCGACTGTGG+AGG 0.638226 2.1:+63173617 None:intergenic
TCTTCATCCGATGGGTCAGG+AGG 0.642327 2.1:+63172704 None:intergenic
TGGTTCCTCACAAGAACGGA+AGG 0.642477 2.1:-63173298 MS.gene003150:intron
GGTGGGAAATTGATCCCCGT+GGG 0.643525 2.1:+63172728 None:intergenic
CCGATGGGTCAGGAGGTGGT+GGG 0.653058 2.1:+63172711 None:intergenic
TGTTGCACTACCAAGCTCAG+TGG 0.656951 2.1:+63172613 None:intergenic
TTGAAGTGGGACAATCATTG+CGG 0.662047 2.1:-63172820 MS.gene003150:CDS
ATTGATTTGGGATCTGCACA+TGG 0.667462 2.1:-63172890 MS.gene003150:CDS
CTCGTCCTTCACCACCCACG+GGG 0.671541 2.1:-63172742 MS.gene003150:CDS
AGGCAACGCAGATTGGTGGA+GGG 0.680879 2.1:-63173511 MS.gene003150:CDS
TCACAGAATCAACATCAACA+TGG 0.707104 2.1:-63173587 MS.gene003150:CDS
AAACTACTGTAATTCCAAAG+GGG 0.709535 2.1:-63172394 MS.gene003150:CDS
GTAGATGTAGAAACAGAACC+TGG 0.729040 2.1:-63172470 MS.gene003150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGTCTTATATTATTT+AGG - chr2.1:63172893-63172912 MS.gene003150:CDS 10.0%
!!! ATTATTTAGAATATGCAATT+CGG + chr2.1:63172675-63172694 None:intergenic 15.0%
!! AAATGAATTACAAATGACTT+AGG - chr2.1:63172831-63172850 MS.gene003150:CDS 20.0%
!!! AGTGTATATGTAATTGATTT+GGG - chr2.1:63172968-63172987 MS.gene003150:intron 20.0%
!!! ATAGACGAAGAAATATTTTT+GGG - chr2.1:63172485-63172504 MS.gene003150:CDS 20.0%
! ATTACAACTATAAGTTGCAA+GGG + chr2.1:63172929-63172948 None:intergenic 25.0%
! CAGTGTATATGTAATTGATT+TGG - chr2.1:63172967-63172986 MS.gene003150:intron 25.0%
! TATTACAACTATAAGTTGCA+AGG + chr2.1:63172930-63172949 None:intergenic 25.0%
! TCTTAATATGTATAATCTCG+TGG + chr2.1:63173086-63173105 None:intergenic 25.0%
! TTTCGTTTGATAAGGTAATA+TGG + chr2.1:63172770-63172789 None:intergenic 25.0%
!! GATAGACGAAGAAATATTTT+TGG - chr2.1:63172484-63172503 MS.gene003150:CDS 25.0%
!! TTTTTACTTGGAAGTTATGA+AGG - chr2.1:63172432-63172451 MS.gene003150:CDS 25.0%
AAACTACTGTAATTCCAAAG+GGG - chr2.1:63173476-63173495 MS.gene003150:CDS 30.0%
ACAAACTACTGTAATTCCAA+AGG - chr2.1:63173474-63173493 MS.gene003150:CDS 30.0%
CAAACTACTGTAATTCCAAA+GGG - chr2.1:63173475-63173494 MS.gene003150:CDS 30.0%
CAGATAATGATTCTCCATAT+AGG + chr2.1:63173615-63173634 None:intergenic 30.0%
GAATCATTATCTGTCAAAGT+TGG - chr2.1:63173622-63173641 MS.gene003150:CDS 30.0%
GAATTACCATTAACAGAGAA+CGG + chr2.1:63172172-63172191 None:intergenic 30.0%
TTGAATGCTTTCGTTTGATA+AGG + chr2.1:63172778-63172797 None:intergenic 30.0%
! TTTATCAGTCACACCTTTTT+GGG + chr2.1:63173536-63173555 None:intergenic 30.0%
!! AATATGGTGTCATTTGATAC+AGG + chr2.1:63172754-63172773 None:intergenic 30.0%
!! AGGATGATGATGATTTGTTT+GGG - chr2.1:63173752-63173771 MS.gene003150:CDS 30.0%
ACTTCCAAGTAAAAAACACC+CGG + chr2.1:63172427-63172446 None:intergenic 35.0%
AGAAGATGAGAGTTTCATTC+AGG - chr2.1:63173329-63173348 MS.gene003150:CDS 35.0%
AGGTAATAGATGCAAGCTAT+TGG + chr2.1:63172734-63172753 None:intergenic 35.0%
ATCCATTCCAGTAACATCAA+AGG + chr2.1:63172617-63172636 None:intergenic 35.0%
GAAGATGAGAGTTTCATTCA+GGG - chr2.1:63173330-63173349 MS.gene003150:CDS 35.0%
GGTGCTAGATAGGATTAATT+TGG - chr2.1:63172462-63172481 MS.gene003150:CDS 35.0%
TAAGGTAGTTGGTCATTCTT+CGG - chr2.1:63172222-63172241 MS.gene003150:CDS 35.0%
TACTTGGAAGTTATGAAGGA+TGG - chr2.1:63172436-63172455 MS.gene003150:CDS 35.0%
TCACAGAATCAACATCAACA+TGG - chr2.1:63172283-63172302 MS.gene003150:CDS 35.0%
TGCAACAAATGGCAAAAACA+AGG - chr2.1:63173273-63173292 MS.gene003150:intron 35.0%
! GTTTATCAGTCACACCTTTT+TGG + chr2.1:63173537-63173556 None:intergenic 35.0%
!! AAAAGCTAAAAGTGCTGAAG+TGG + chr2.1:63172859-63172878 None:intergenic 35.0%
!! ATCGTAAATCCCAGTTTTAG+CGG + chr2.1:63173590-63173609 None:intergenic 35.0%
!! GAGGATGATGATGATTTGTT+TGG - chr2.1:63173751-63173770 MS.gene003150:CDS 35.0%
!!! GACGAAGAAATATTTTTGGG+AGG - chr2.1:63172488-63172507 MS.gene003150:CDS 35.0%
AAACTCAACAGGTGAATCCT+TGG + chr2.1:63173032-63173051 None:intergenic 40.0%
AATACGCTGCTGAATCGTTA+TGG - chr2.1:63173205-63173224 MS.gene003150:intron 40.0%
ACTGTAATTCCAAAGGGGAA+AGG - chr2.1:63173481-63173500 MS.gene003150:CDS 40.0%
ATCAAAAACCCCGCTAAAAC+TGG - chr2.1:63173577-63173596 MS.gene003150:CDS 40.0%
CAAACGCTCATTTGCAACAA+AGG + chr2.1:63173008-63173027 None:intergenic 40.0%
CAAGCACAAAATCACAAGTC+TGG + chr2.1:63172519-63172538 None:intergenic 40.0%
CAGTCTTCTAGTAAGGTAGT+TGG - chr2.1:63172211-63172230 MS.gene003150:CDS 40.0%
CATCAACATGGTTCTCAGAA+AGG - chr2.1:63172295-63172314 MS.gene003150:CDS 40.0%
CTCCTTTGATGTTACTGGAA+TGG - chr2.1:63172612-63172631 MS.gene003150:CDS 40.0%
CTGTAATTCCAAAGGGGAAA+GGG - chr2.1:63173482-63173501 MS.gene003150:CDS 40.0%
GAGGTAGATTCATCCCAAAA+AGG - chr2.1:63173520-63173539 MS.gene003150:CDS 40.0%
GAGGTTGTTGGAATTTCAGA+TGG - chr2.1:63173376-63173395 MS.gene003150:CDS 40.0%
GGGATTTACGATGACCTATA+TGG - chr2.1:63173598-63173617 MS.gene003150:CDS 40.0%
GTAGATGTAGAAACAGAACC+TGG - chr2.1:63173400-63173419 MS.gene003150:CDS 40.0%
GTTAAGGAAGGAAGTCTAGT+TGG - chr2.1:63173433-63173452 MS.gene003150:CDS 40.0%
GTTTAAGAAAGCCGAGAGTT+TGG - chr2.1:63172144-63172163 MS.gene003150:CDS 40.0%
TCAAAAACCCCGCTAAAACT+GGG - chr2.1:63173578-63173597 MS.gene003150:CDS 40.0%
TCTCTCTCCTTTGATGTTAC+TGG - chr2.1:63172607-63172626 MS.gene003150:CDS 40.0%
TCTTAGCAGCTCTTTCTGAT+TGG + chr2.1:63173303-63173322 None:intergenic 40.0%
TGTACAGAATTCTTCGACTG+TGG + chr2.1:63172259-63172278 None:intergenic 40.0%
TGTTGCTCAGTCTTCTAGTA+AGG - chr2.1:63172204-63172223 MS.gene003150:CDS 40.0%
TTCACCTGTTGAGTTTGAAG+TGG - chr2.1:63173036-63173055 MS.gene003150:intron 40.0%
TTGAAGTGGGACAATCATTG+CGG - chr2.1:63173050-63173069 MS.gene003150:intron 40.0%
TTGGAACCGTTCTCTGTTAA+TGG - chr2.1:63172163-63172182 MS.gene003150:CDS 40.0%
TTTCATTCAGGGATCAGGTT+GGG - chr2.1:63173341-63173360 MS.gene003150:CDS 40.0%
! TCACCTGTTGAGTTTGAAGT+GGG - chr2.1:63173037-63173056 MS.gene003150:intron 40.0%
!! ATTGATTTGGGATCTGCACA+TGG - chr2.1:63172980-63172999 MS.gene003150:intron 40.0%
!! CGGGGTTTTTGATCTTGTTT+AGG + chr2.1:63173570-63173589 None:intergenic 40.0%
!! GAAGAACATCTGGTCTTGAT+AGG - chr2.1:63172122-63172141 MS.gene003150:CDS 40.0%
!! TCGTAAATCCCAGTTTTAGC+GGG + chr2.1:63173589-63173608 None:intergenic 40.0%
AAGTAAAAAACACCCGGTCG+CGG + chr2.1:63172421-63172440 None:intergenic 45.0%
AATCAACAGGCAACGCAGAT+TGG - chr2.1:63172352-63172371 MS.gene003150:CDS 45.0%
ACAGAATTCTTCGACTGTGG+AGG + chr2.1:63172256-63172275 None:intergenic 45.0%
ACATGGTTCTCAGAAAGGTG+TGG - chr2.1:63172300-63172319 MS.gene003150:CDS 45.0%
AGAGAACGGTTCCAAACTCT+CGG + chr2.1:63172158-63172177 None:intergenic 45.0%
CTTCCTTCCTTAACACCAAC+TGG + chr2.1:63173427-63173446 None:intergenic 45.0%
GAGAGTTTCATTCAGGGATC+AGG - chr2.1:63173336-63173355 MS.gene003150:CDS 45.0%
GCTAAGGAGAATGGAGAAAG+TGG - chr2.1:63173694-63173713 MS.gene003150:CDS 45.0%
GGAAGTTATGAAGGATGGTC+AGG - chr2.1:63172441-63172460 MS.gene003150:CDS 45.0%
GGAGAGTTAGTTGAGGTTGT+TGG - chr2.1:63173364-63173383 MS.gene003150:CDS 45.0%
GTTTCATTCAGGGATCAGGT+TGG - chr2.1:63173340-63173359 MS.gene003150:CDS 45.0%
TAGTTGGTCATTCTTCGGCT+TGG - chr2.1:63172227-63172246 MS.gene003150:CDS 45.0%
TCCTCGTAATCAGCAATGCT+TGG + chr2.1:63173736-63173755 None:intergenic 45.0%
TCTAACCTTCCGTTCTTGTG+AGG + chr2.1:63172580-63172599 None:intergenic 45.0%
TGCAAATGAGCGTTTGACCA+AGG - chr2.1:63173012-63173031 MS.gene003150:intron 45.0%
TGTCAAAGTTGGATCAGCCT+GGG - chr2.1:63173633-63173652 MS.gene003150:CDS 45.0%
TGTCCCACTTCAAACTCAAC+AGG + chr2.1:63173043-63173062 None:intergenic 45.0%
! ACTACCAAGCTCAGTGGATT+TGG + chr2.1:63173254-63173273 None:intergenic 45.0%
! CATGGTTCTCAGAAAGGTGT+GGG - chr2.1:63172301-63172320 MS.gene003150:CDS 45.0%
! TCCAAGCATTGCTGATTACG+AGG - chr2.1:63173732-63173751 MS.gene003150:CDS 45.0%
! TTCATTCAGGGATCAGGTTG+GGG - chr2.1:63173342-63173361 MS.gene003150:CDS 45.0%
!! CGTAAATCCCAGTTTTAGCG+GGG + chr2.1:63173588-63173607 None:intergenic 45.0%
!! GAGCTTGGTAGTGCAACAAA+TGG - chr2.1:63173262-63173281 MS.gene003150:intron 45.0%
!! TGTTGATTCTGCCCCAACAA+CGG + chr2.1:63172340-63172359 None:intergenic 45.0%
ACAACAGCCTCTTCATCCGA+TGG + chr2.1:63173178-63173197 None:intergenic 50.0%
AGGATGGTCAGGTGCTAGAT+AGG - chr2.1:63172452-63172471 MS.gene003150:CDS 50.0%
CAACAGCCTCTTCATCCGAT+GGG + chr2.1:63173177-63173196 None:intergenic 50.0%
CTGTCAAAGTTGGATCAGCC+TGG - chr2.1:63173632-63173651 MS.gene003150:CDS 50.0%
GAAACAGAACCTGGTCCAGT+TGG - chr2.1:63173409-63173428 MS.gene003150:CDS 50.0%
GCATACTCACCTGTCAGTAG+TGG - chr2.1:63173655-63173674 MS.gene003150:CDS 50.0%
GTGTCCAAATCCACTGAGCT+TGG - chr2.1:63173247-63173266 MS.gene003150:intron 50.0%
GTTGTTGGGGCAGAATCAAC+AGG - chr2.1:63172339-63172358 MS.gene003150:CDS 50.0%
TCCTTAACACCAACTGGACC+AGG + chr2.1:63173421-63173440 None:intergenic 50.0%
TCTCCATTCTCCTTAGCTGC+TGG + chr2.1:63173691-63173710 None:intergenic 50.0%
TGAATCTACCTCCCTAGCAG+AGG + chr2.1:63173512-63173531 None:intergenic 50.0%
TGGTTCCTCACAAGAACGGA+AGG - chr2.1:63172572-63172591 MS.gene003150:CDS 50.0%
TGTTGCACTACCAAGCTCAG+TGG + chr2.1:63173260-63173279 None:intergenic 50.0%
! TTCTCAGAAAGGTGTGGGAG+TGG - chr2.1:63172306-63172325 MS.gene003150:CDS 50.0%
!! ACCTGGTCCAGTTGGTGTTA+AGG - chr2.1:63173417-63173436 MS.gene003150:CDS 50.0%
!! GGTCCAGTTGGTGTTAAGGA+AGG - chr2.1:63173421-63173440 MS.gene003150:CDS 50.0%
!! TCATTCAGGGATCAGGTTGG+GGG - chr2.1:63173343-63173362 MS.gene003150:CDS 50.0%
!!! GCGACCGGGTGTTTTTTACT+TGG - chr2.1:63172420-63172439 MS.gene003150:CDS 50.0%
ACTGACAGGTGAGTATGCCC+AGG + chr2.1:63173653-63173672 None:intergenic 55.0%
AGGCAACGCAGATTGGTGGA+GGG - chr2.1:63172359-63172378 MS.gene003150:CDS 55.0%
CAACAGGCAACGCAGATTGG+TGG - chr2.1:63172355-63172374 MS.gene003150:CDS 55.0%
GAAAGGGCAGTCCTCTGCTA+GGG - chr2.1:63173498-63173517 MS.gene003150:CDS 55.0%
GATGTGGCAGCCACCAGATT+GGG - chr2.1:63172387-63172406 MS.gene003150:CDS 55.0%
GCGGTGGTTCCTCACAAGAA+CGG - chr2.1:63172568-63172587 MS.gene003150:CDS 55.0%
GCTCGTTCACCACTACTGAC+AGG + chr2.1:63173667-63173686 None:intergenic 55.0%
GGTGGGAAATTGATCCCCGT+GGG + chr2.1:63173145-63173164 None:intergenic 55.0%
GGTTGGGGGAGAGTTAGTTG+AGG - chr2.1:63173357-63173376 MS.gene003150:CDS 55.0%
TCCTGACCCATCGGATGAAG+AGG - chr2.1:63173168-63173187 MS.gene003150:intron 55.0%
TCTTCATCCGATGGGTCAGG+AGG + chr2.1:63173169-63173188 None:intergenic 55.0%
TGGTGGGAAATTGATCCCCG+TGG + chr2.1:63173146-63173165 None:intergenic 55.0%
TGTCTCTCGCCAACATGCTG+CGG - chr2.1:63172549-63172568 MS.gene003150:CDS 55.0%
! TCAGAAAGGTGTGGGAGTGG+AGG - chr2.1:63172309-63172328 MS.gene003150:CDS 55.0%
CAGGCAACGCAGATTGGTGG+AGG - chr2.1:63172358-63172377 MS.gene003150:CDS 60.0%
CGATGTGGCAGCCACCAGAT+TGG - chr2.1:63172386-63172405 MS.gene003150:CDS 60.0%
GAGGAACCACCGCAGCATGT+TGG + chr2.1:63172561-63172580 None:intergenic 60.0%
GAGGACTGCCCTTTCCCCTT+TGG + chr2.1:63173493-63173512 None:intergenic 60.0%
GCCTCTTCATCCGATGGGTC+AGG + chr2.1:63173172-63173191 None:intergenic 60.0%
GCGCCAGCAGCTAAGGAGAA+TGG - chr2.1:63173685-63173704 MS.gene003150:CDS 60.0%
GGAAAGGGCAGTCCTCTGCT+AGG - chr2.1:63173497-63173516 MS.gene003150:CDS 60.0%
GGCTCAATCGCCCAATCTGG+TGG + chr2.1:63172400-63172419 None:intergenic 60.0%
GGGAAATTGATCCCCGTGGG+TGG + chr2.1:63173142-63173161 None:intergenic 60.0%
TCATCCGATGGGTCAGGAGG+TGG + chr2.1:63173166-63173185 None:intergenic 60.0%
TGAACGAGCGCCAGCAGCTA+AGG - chr2.1:63173678-63173697 MS.gene003150:CDS 60.0%
TTGATCCCCGTGGGTGGTGA+AGG + chr2.1:63173136-63173155 None:intergenic 60.0%
TTGGTGGAGGGCAGTCGATG+TGG - chr2.1:63172371-63172390 MS.gene003150:CDS 60.0%
! GAAAGGTGTGGGAGTGGAGG+CGG - chr2.1:63172312-63172331 MS.gene003150:CDS 60.0%
AGGGCAGTCCTCTGCTAGGG+AGG - chr2.1:63173501-63173520 MS.gene003150:CDS 65.0%
AGTGGAGGCGGCTCCGTTGT+TGG - chr2.1:63172324-63172343 MS.gene003150:CDS 65.0%
CCCACCACCTCCTGACCCAT+CGG - chr2.1:63173159-63173178 MS.gene003150:intron 65.0%
CCCTCGTCCTTCACCACCCA+CGG - chr2.1:63173126-63173145 MS.gene003150:intron 65.0%
CCGATGGGTCAGGAGGTGGT+GGG + chr2.1:63173162-63173181 None:intergenic 65.0%
CCGTGGGTGGTGAAGGACGA+GGG + chr2.1:63173129-63173148 None:intergenic 65.0%
CCTCGTCCTTCACCACCCAC+GGG - chr2.1:63173127-63173146 MS.gene003150:intron 65.0%
CGCGGCTCAATCGCCCAATC+TGG + chr2.1:63172403-63172422 None:intergenic 65.0%
CTCGTCCTTCACCACCCACG+GGG - chr2.1:63173128-63173147 MS.gene003150:intron 65.0%
CTCTCGCCAACATGCTGCGG+TGG - chr2.1:63172552-63172571 MS.gene003150:CDS 65.0%
GTGGAGGCGGCTCCGTTGTT+GGG - chr2.1:63172325-63172344 MS.gene003150:CDS 65.0%
TCCGATGGGTCAGGAGGTGG+TGG + chr2.1:63173163-63173182 None:intergenic 65.0%
TGGAGGCGGCTCCGTTGTTG+GGG - chr2.1:63172326-63172345 MS.gene003150:CDS 65.0%
TTGGGCGATTGAGCCGCGAC+CGG - chr2.1:63172405-63172424 MS.gene003150:CDS 65.0%
CCCGTGGGTGGTGAAGGACG+AGG + chr2.1:63173130-63173149 None:intergenic 70.0%
TGGGCGATTGAGCCGCGACC+GGG - chr2.1:63172406-63172425 MS.gene003150:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 63172115 63173777 63172115 ID=MS.gene003150
chr2.1 mRNA 63172115 63173777 63172115 ID=MS.gene003150.t1;Parent=MS.gene003150
chr2.1 exon 63173299 63173777 63173299 ID=MS.gene003150.t1.exon1;Parent=MS.gene003150.t1
chr2.1 CDS 63173299 63173777 63173299 ID=cds.MS.gene003150.t1;Parent=MS.gene003150.t1
chr2.1 exon 63172115 63172922 63172115 ID=MS.gene003150.t1.exon2;Parent=MS.gene003150.t1
chr2.1 CDS 63172115 63172922 63172115 ID=cds.MS.gene003150.t1;Parent=MS.gene003150.t1
Gene Sequence

>MS.gene003150

ATGTATGGAAGAACATCTGGTCTTGATAGGTTTAAGAAAGCCGAGAGTTTGGAACCGTTCTCTGTTAATGGTAATTCGTCTTCGAGAAATGTTGCTCAGTCTTCTAGTAAGGTAGTTGGTCATTCTTCGGCTTGGCTGCCTCCACAGTCGAAGAATTCTGTACATCAATCACAGAATCAACATCAACATGGTTCTCAGAAAGGTGTGGGAGTGGAGGCGGCTCCGTTGTTGGGGCAGAATCAACAGGCAACGCAGATTGGTGGAGGGCAGTCGATGTGGCAGCCACCAGATTGGGCGATTGAGCCGCGACCGGGTGTTTTTTACTTGGAAGTTATGAAGGATGGTCAGGTGCTAGATAGGATTAATTTGGATAGACGAAGAAATATTTTTGGGAGGCAAATCCAGACTTGTGATTTTGTGCTTGATCATCAATCTGTCTCTCGCCAACATGCTGCGGTGGTTCCTCACAAGAACGGAAGGTTAGAACAGATCTCTCTCTCCTTTGATGTTACTGGAATGGATGTGATGTTTCTCTATATAAATATGTCATTTTCTTTCCGAATTGCATATTCTAAATAATTTGTCTCAAAACTATTCAAAAACTAAAGCTTCTTTTCCAATAGCTTGCATCTATTACCTGTATCAAATGACACCATATTACCTTATCAAACGAAAGCATTCAAAGATACTAATTCGTGTTAATCAGTCGTTCATAAAAATGAATTACAAATGACTTAGGAACCACTTCAGCACTTTTAGCTTTTAGATATTAAACTAAAAATATGTCTTATATTATTTAGGAATGATGATTCCCTTGCAACTTATAGTTGTAATATTATTTTTACTTTATTTCAGTGTATATGTAATTGATTTGGGATCTGCACATGGTACCTTTGTTGCAAATGAGCGTTTGACCAAGGATTCACCTGTTGAGTTTGAAGTGGGACAATCATTGCGGTTTGCTGCATCCACGAGATTATACATATTAAGAAAGAATGATGCAGCTCTTTTCCCTCGTCCTTCACCACCCACGGGGATCAATTTCCCACCACCTCCTGACCCATCGGATGAAGAGGCTGTTGTTACTTATAATACGCTGCTGAATCGTTATGGCATCAACAAGTCTGATCTCGTGTCCAAATCCACTGAGCTTGGTAGTGCAACAAATGGCAAAAACAAGGATTGCCAATCAGAAAGAGCTGCTAAGAGAATTAAGAAGATGAGAGTTTCATTCAGGGATCAGGTTGGGGGAGAGTTAGTTGAGGTTGTTGGAATTTCAGATGGTGTAGATGTAGAAACAGAACCTGGTCCAGTTGGTGTTAAGGAAGGAAGTCTAGTTGGTAAATATGAATCTCTTGTACAAACTACTGTAATTCCAAAGGGGAAAGGGCAGTCCTCTGCTAGGGAGGTAGATTCATCCCAAAAAGGTGTGACTGATAAACTACAAGAAGTCCTAAACAAGATCAAAAACCCCGCTAAAACTGGGATTTACGATGACCTATATGGAGAATCATTATCTGTCAAAGTTGGATCAGCCTGGGCATACTCACCTGTCAGTAGTGGTGAACGAGCGCCAGCAGCTAAGGAGAATGGAGAAAGTGGAAAATCAGACAGTAATCCAAGCATTGCTGATTACGAGGATGATGATGATTTGTTTGGGTGA
Protein sequence

>MS.gene003150.t1

MYGRTSGLDRFKKAESLEPFSVNGNSSSRNVAQSSSKVVGHSSAWLPPQSKNSVHQSQNQHQHGSQKGVGVEAAPLLGQNQQATQIGGGQSMWQPPDWAIEPRPGVFYLEVMKDGQVLDRINLDRRRNIFGRQIQTCDFVLDHQSVSRQHAAVVPHKNGSVYVIDLGSAHGTFVANERLTKDSPVEFEVGQSLRFAASTRLYILRKNDAALFPRPSPPTGINFPPPPDPSDEEAVVTYNTLLNRYGINKSDLVSKSTELGSATNGKNKDCQSERAAKRIKKMRVSFRDQVGGELVEVVGISDGVDVETEPGPVGVKEGSLVGKYESLVQTTVIPKGKGQSSAREVDSSQKGVTDKLQEVLNKIKNPAKTGIYDDLYGESLSVKVGSAWAYSPVSSGERAPAAKENGESGKSDSNPSIADYEDDDDLFG