Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38909.t1 | RHN40751.1 | 98.9 | 370 | 4 | 0 | 1 | 370 | 48 | 417 | 4.40E-175 | 624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38909.t1 | P37518 | 53.2 | 370 | 169 | 2 | 1 | 370 | 1 | 366 | 3.7e-106 | 386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38909.t1 | A0A396GKP1 | 98.9 | 370 | 4 | 0 | 1 | 370 | 48 | 417 | 3.2e-175 | 624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene38909 | 0.820974 | 5.17E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene38909 | 0.826385 | 2.79E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene38909 | 0.887576 | 1.26E-72 | -1.69E-46 |
| MS.gene049356 | MS.gene38909 | 0.818116 | 2.32E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene38909 | 0.823171 | 1.60E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene38909 | 0.869261 | 3.54E-66 | -1.69E-46 |
| MS.gene049491 | MS.gene38909 | 0.857895 | 1.19E-62 | -1.69E-46 |
| MS.gene049609 | MS.gene38909 | 0.802268 | 6.08E-49 | -1.69E-46 |
| MS.gene049614 | MS.gene38909 | 0.833763 | 4.42E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene38909 | 0.850927 | 1.24E-60 | -1.69E-46 |
| MS.gene049662 | MS.gene38909 | 0.840229 | 9.86E-58 | -1.69E-46 |
| MS.gene049758 | MS.gene38909 | 0.823863 | 1.10E-53 | -1.69E-46 |
| MS.gene049760 | MS.gene38909 | 0.840861 | 6.74E-58 | -1.69E-46 |
| MS.gene049805 | MS.gene38909 | 0.83374 | 4.48E-56 | -1.69E-46 |
| MS.gene049907 | MS.gene38909 | 0.803586 | 3.25E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene38909 | 0.871895 | 4.82E-67 | -1.69E-46 |
| MS.gene050099 | MS.gene38909 | 0.828291 | 9.75E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene38909 | 0.864687 | 1.02E-64 | -1.69E-46 |
| MS.gene050397 | MS.gene38909 | 0.847998 | 8.11E-60 | -1.69E-46 |
| MS.gene050432 | MS.gene38909 | 0.872045 | 4.30E-67 | -1.69E-46 |
| MS.gene050529 | MS.gene38909 | 0.823349 | 1.45E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene38909 | 0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene38909 | 0.825809 | 3.83E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene38909 | 0.872676 | 2.65E-67 | -1.69E-46 |
| MS.gene050770 | MS.gene38909 | 0.874697 | 5.52E-68 | -1.69E-46 |
| MS.gene050772 | MS.gene38909 | 0.81208 | 5.07E-51 | -1.69E-46 |
| MS.gene050783 | MS.gene38909 | 0.808753 | 2.65E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene38909 | 0.825865 | 3.71E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene38909 | 0.88621 | 4.17E-72 | -1.69E-46 |
| MS.gene05105 | MS.gene38909 | 0.846861 | 1.66E-59 | -1.69E-46 |
| MS.gene051228 | MS.gene38909 | 0.826979 | 2.01E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene38909 | 0.813413 | 2.59E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene38909 | 0.842844 | 2.02E-58 | -1.69E-46 |
| MS.gene051471 | MS.gene38909 | 0.853776 | 1.91E-61 | -1.69E-46 |
| MS.gene051666 | MS.gene38909 | 0.823956 | 1.05E-53 | -1.69E-46 |
| MS.gene051692 | MS.gene38909 | 0.825175 | 5.41E-54 | -1.69E-46 |
| MS.gene051694 | MS.gene38909 | 0.813915 | 2.01E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene38909 | 0.834359 | 3.14E-56 | -1.69E-46 |
| MS.gene051877 | MS.gene38909 | 0.830829 | 2.36E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene38909 | 0.889209 | 2.97E-73 | -1.69E-46 |
| MS.gene052188 | MS.gene38909 | 0.864527 | 1.14E-64 | -1.69E-46 |
| MS.gene052253 | MS.gene38909 | 0.829739 | 4.35E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene38909 | 0.825919 | 3.60E-54 | -1.69E-46 |
| MS.gene052290 | MS.gene38909 | 0.850056 | 2.17E-60 | -1.69E-46 |
| MS.gene052310 | MS.gene38909 | 0.875712 | 2.48E-68 | -1.69E-46 |
| MS.gene052322 | MS.gene38909 | 0.858128 | 1.02E-62 | -1.69E-46 |
| MS.gene052326 | MS.gene38909 | 0.881042 | 3.33E-70 | -1.69E-46 |
| MS.gene052340 | MS.gene38909 | 0.829109 | 6.19E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene38909 | 0.84519 | 4.74E-59 | -1.69E-46 |
| MS.gene052421 | MS.gene38909 | 0.83394 | 4.00E-56 | -1.69E-46 |
| MS.gene052484 | MS.gene38909 | 0.818623 | 1.78E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene38909 | 0.838319 | 3.09E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene38909 | 0.815277 | 1.00E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene38909 | 0.853104 | 2.98E-61 | -1.69E-46 |
| MS.gene053103 | MS.gene38909 | 0.820607 | 6.27E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene38909 | 0.809611 | 1.74E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene38909 | 0.827782 | 1.29E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene38909 | 0.843937 | 1.03E-58 | -1.69E-46 |
| MS.gene053213 | MS.gene38909 | 0.802317 | 5.94E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene38909 | 0.85795 | 1.15E-62 | -1.69E-46 |
| MS.gene053384 | MS.gene38909 | 0.829153 | 6.03E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene38909 | 0.808756 | 2.65E-50 | -1.69E-46 |
| MS.gene053758 | MS.gene38909 | 0.823233 | 1.55E-53 | -1.69E-46 |
| MS.gene053813 | MS.gene38909 | 0.848455 | 6.06E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene38909 | 0.830998 | 2.14E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene38909 | 0.866328 | 3.09E-65 | -1.69E-46 |
| MS.gene054376 | MS.gene38909 | 0.874268 | 7.71E-68 | -1.69E-46 |
| MS.gene05455 | MS.gene38909 | 0.806141 | 9.50E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene38909 | 0.87467 | 5.63E-68 | -1.69E-46 |
| MS.gene054803 | MS.gene38909 | 0.871558 | 6.24E-67 | -1.69E-46 |
| MS.gene054804 | MS.gene38909 | 0.876232 | 1.64E-68 | -1.69E-46 |
| MS.gene054955 | MS.gene38909 | 0.84443 | 7.60E-59 | -1.69E-46 |
| MS.gene05505 | MS.gene38909 | 0.849564 | 2.98E-60 | -1.69E-46 |
| MS.gene055116 | MS.gene38909 | 0.824492 | 7.84E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene38909 | 0.816453 | 5.49E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene38909 | 0.849998 | 2.26E-60 | -1.69E-46 |
| MS.gene055277 | MS.gene38909 | 0.887619 | 1.22E-72 | -1.69E-46 |
| MS.gene055390 | MS.gene38909 | 0.858792 | 6.46E-63 | -1.69E-46 |
| MS.gene055397 | MS.gene38909 | 0.877866 | 4.46E-69 | -1.69E-46 |
| MS.gene055412 | MS.gene38909 | 0.833024 | 6.76E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene38909 | 0.867806 | 1.04E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene38909 | 0.842423 | 2.61E-58 | -1.69E-46 |
| MS.gene055499 | MS.gene38909 | 0.867226 | 1.60E-65 | -1.69E-46 |
| MS.gene055647 | MS.gene38909 | 0.825081 | 5.69E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene38909 | 0.816406 | 5.62E-52 | -1.69E-46 |
| MS.gene055896 | MS.gene38909 | 0.838524 | 2.73E-57 | -1.69E-46 |
| MS.gene05592 | MS.gene38909 | 0.84259 | 2.36E-58 | -1.69E-46 |
| MS.gene05602 | MS.gene38909 | 0.81558 | 8.59E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene38909 | 0.810047 | 1.40E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene38909 | 0.838054 | 3.61E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene38909 | 0.830367 | 3.06E-55 | -1.69E-46 |
| MS.gene056410 | MS.gene38909 | 0.853421 | 2.42E-61 | -1.69E-46 |
| MS.gene056452 | MS.gene38909 | 0.807266 | 5.50E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene38909 | 0.815734 | 7.94E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene38909 | 0.887899 | 9.51E-73 | -1.69E-46 |
| MS.gene056612 | MS.gene38909 | 0.823929 | 1.06E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene38909 | 0.818817 | 1.61E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene38909 | 0.8448 | 6.04E-59 | -1.69E-46 |
| MS.gene056897 | MS.gene38909 | 0.807066 | 6.06E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene38909 | 0.845557 | 3.77E-59 | -1.69E-46 |
| MS.gene05702 | MS.gene38909 | 0.832535 | 8.94E-56 | -1.69E-46 |
| MS.gene057123 | MS.gene38909 | 0.85159 | 8.04E-61 | -1.69E-46 |
| MS.gene057124 | MS.gene38909 | 0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene057129 | MS.gene38909 | 0.871803 | 5.17E-67 | -1.69E-46 |
| MS.gene057146 | MS.gene38909 | 0.865782 | 4.60E-65 | -1.69E-46 |
| MS.gene057295 | MS.gene38909 | 0.844647 | 6.64E-59 | -1.69E-46 |
| MS.gene057331 | MS.gene38909 | 0.801768 | 7.71E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene38909 | 0.8384 | 2.94E-57 | -1.69E-46 |
| MS.gene05735 | MS.gene38909 | 0.818216 | 2.20E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene38909 | 0.832567 | 8.78E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene38909 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene057449 | MS.gene38909 | 0.803739 | 3.02E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene38909 | 0.808621 | 2.83E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene38909 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene38909 | 0.830668 | 2.58E-55 | -1.69E-46 |
| MS.gene057926 | MS.gene38909 | 0.801972 | 7.00E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene38909 | 0.845972 | 2.91E-59 | -1.69E-46 |
| MS.gene058006 | MS.gene38909 | 0.818607 | 1.80E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene38909 | 0.834486 | 2.92E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene38909 | 0.844444 | 7.53E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene38909 | 0.843212 | 1.61E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene38909 | 0.829011 | 6.54E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene38909 | 0.858484 | 7.98E-63 | -1.69E-46 |
| MS.gene058323 | MS.gene38909 | 0.815847 | 7.50E-52 | -1.69E-46 |
| MS.gene058365 | MS.gene38909 | 0.829367 | 5.36E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene38909 | 0.916466 | 1.72E-85 | -1.69E-46 |
| MS.gene058787 | MS.gene38909 | 0.825451 | 4.65E-54 | -1.69E-46 |
| MS.gene05886 | MS.gene38909 | 0.810809 | 9.58E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene38909 | 0.808475 | 3.04E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene38909 | 0.829881 | 4.02E-55 | -1.69E-46 |
| MS.gene058993 | MS.gene38909 | 0.867563 | 1.25E-65 | -1.69E-46 |
| MS.gene059029 | MS.gene38909 | 0.814571 | 1.44E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene38909 | 0.854557 | 1.14E-61 | -1.69E-46 |
| MS.gene059326 | MS.gene38909 | 0.835337 | 1.78E-56 | -1.69E-46 |
| MS.gene05934 | MS.gene38909 | 0.824699 | 7.00E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene38909 | 0.826995 | 2.00E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene38909 | 0.861281 | 1.15E-63 | -1.69E-46 |
| MS.gene059597 | MS.gene38909 | 0.868231 | 7.61E-66 | -1.69E-46 |
| MS.gene05959 | MS.gene38909 | 0.852999 | 3.19E-61 | -1.69E-46 |
| MS.gene059676 | MS.gene38909 | 0.882009 | 1.49E-70 | -1.69E-46 |
| MS.gene059688 | MS.gene38909 | 0.875819 | 2.28E-68 | -1.69E-46 |
| MS.gene059692 | MS.gene38909 | 0.875907 | 2.13E-68 | -1.69E-46 |
| MS.gene059695 | MS.gene38909 | 0.878126 | 3.61E-69 | -1.69E-46 |
| MS.gene059708 | MS.gene38909 | 0.833107 | 6.45E-56 | -1.69E-46 |
| MS.gene059711 | MS.gene38909 | 0.832594 | 8.65E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene38909 | 0.818425 | 1.97E-52 | -1.69E-46 |
| MS.gene059858 | MS.gene38909 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene05986 | MS.gene38909 | 0.825229 | 5.25E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene38909 | 0.841007 | 6.17E-58 | -1.69E-46 |
| MS.gene059902 | MS.gene38909 | 0.831842 | 1.33E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene38909 | 0.883138 | 5.78E-71 | -1.69E-46 |
| MS.gene059974 | MS.gene38909 | 0.815732 | 7.95E-52 | -1.69E-46 |
| MS.gene060005 | MS.gene38909 | 0.830273 | 3.22E-55 | -1.69E-46 |
| MS.gene060193 | MS.gene38909 | 0.819633 | 1.05E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene38909 | 0.853912 | 1.75E-61 | -1.69E-46 |
| MS.gene060403 | MS.gene38909 | 0.821571 | 3.76E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene38909 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene38909 | 0.871443 | 6.81E-67 | -1.69E-46 |
| MS.gene060818 | MS.gene38909 | 0.873747 | 1.16E-67 | -1.69E-46 |
| MS.gene060837 | MS.gene38909 | 0.826085 | 3.29E-54 | -1.69E-46 |
| MS.gene06090 | MS.gene38909 | 0.826799 | 2.23E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene38909 | 0.83861 | 2.60E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene38909 | 0.835521 | 1.60E-56 | -1.69E-46 |
| MS.gene061051 | MS.gene38909 | -0.843507 | 1.34E-58 | -1.69E-46 |
| MS.gene061200 | MS.gene38909 | 0.886407 | 3.51E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38909 | MS.gene03062 | PPI |
| MS.gene38909 | MS.gene02106 | PPI |
| MS.gene74535 | MS.gene38909 | PPI |
| MS.gene38909 | MS.gene003309 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38909.t1 | MTR_2g030370 | 41.892 | 370 | 209 | 5 | 2 | 370 | 24 | 388 | 2.20e-93 | 285 |
| MS.gene38909.t1 | MTR_2g030335 | 60.577 | 104 | 40 | 1 | 3 | 106 | 25 | 127 | 1.30e-33 | 124 |
| MS.gene38909.t1 | MTR_2g019790 | 35.714 | 140 | 59 | 5 | 6 | 143 | 322 | 432 | 7.46e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38909.t1 | AT1G56050 | 85.135 | 370 | 55 | 0 | 1 | 370 | 52 | 421 | 0.0 | 647 |
| MS.gene38909.t1 | AT1G30580 | 40.650 | 369 | 215 | 3 | 2 | 370 | 24 | 388 | 3.11e-89 | 274 |
Find 71 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGCTCTATTGTACAAAA+AGG | 0.208665 | 8.4:+50693450 | None:intergenic |
| TAGAGCAACATATGATCTTT+TGG | 0.234785 | 8.4:-50691245 | MS.gene38909:CDS |
| AACATTTGCCACATATATAA+TGG | 0.237147 | 8.4:+50691989 | None:intergenic |
| GATCATATGTTGCTCTAATT+AGG | 0.267758 | 8.4:+50691251 | None:intergenic |
| CTTGGTGCAGCACGAGAAAA+AGG | 0.311357 | 8.4:-50688625 | MS.gene38909:CDS |
| CACATATATAATGGGTTTCA+TGG | 0.318050 | 8.4:+50691998 | None:intergenic |
| AGCAATATCTACAAACTCTA+TGG | 0.339487 | 8.4:+50693347 | None:intergenic |
| AACAAACAATGATTACGTTA+TGG | 0.354064 | 8.4:-50691943 | MS.gene38909:CDS |
| TACAATGACTTTGTTGCTGC+TGG | 0.356603 | 8.4:-50688652 | MS.gene38909:CDS |
| ACATTTGCCACATATATAAT+GGG | 0.363510 | 8.4:+50691990 | None:intergenic |
| ACAAACAATGATTACGTTAT+GGG | 0.375351 | 8.4:-50691942 | MS.gene38909:CDS |
| AGCACTTGGAGACGAGAATC+TGG | 0.379539 | 8.4:+50693408 | None:intergenic |
| ATAGATAAACACCTGAAGTA+TGG | 0.386070 | 8.4:+50693101 | None:intergenic |
| ATAGAGTTTGTAGATATTGC+TGG | 0.391580 | 8.4:-50693345 | MS.gene38909:CDS |
| TTTGTTGCTGCTGGTTCACT+TGG | 0.410289 | 8.4:-50688643 | MS.gene38909:CDS |
| CAAGAATATTTGAAATCTCT+TGG | 0.415773 | 8.4:-50691298 | MS.gene38909:CDS |
| AGGGTAGATTTACCAACATT+AGG | 0.418408 | 8.4:+50695537 | None:intergenic |
| TGAGGTGGACTCCATACTTC+AGG | 0.420128 | 8.4:-50693112 | MS.gene38909:intron |
| TTCCCTCTCAAAATCTGTTA+AGG | 0.434687 | 8.4:+50692046 | None:intergenic |
| AGTCTCAAAGCTGGTATTGT+TGG | 0.448030 | 8.4:-50695564 | MS.gene38909:CDS |
| GGTGTTAGTGAAAGTGGTCT+TGG | 0.465003 | 8.4:-50691277 | MS.gene38909:CDS |
| ACAGCAACAATCCCTACATT+TGG | 0.466715 | 8.4:+50693432 | None:intergenic |
| TACTGAGATCGGAGAGCACT+TGG | 0.466988 | 8.4:+50693394 | None:intergenic |
| ATGACATTATTCATGTGAAC+GGG | 0.475473 | 8.4:-50692607 | MS.gene38909:CDS |
| TGTACAATAGAGCCAAATGT+AGG | 0.476002 | 8.4:-50693444 | MS.gene38909:CDS |
| AAGGCATGGACAATACTTGC+AGG | 0.478540 | 8.4:-50690752 | MS.gene38909:intron |
| TCACATGTTTAGGTTGAAAA+CGG | 0.480742 | 8.4:-50693495 | MS.gene38909:intron |
| GTTGCATCTGAGTTGCAGTC+TGG | 0.485016 | 8.4:-50691909 | MS.gene38909:CDS |
| TCTCTTGGTGTTAGTGAAAG+TGG | 0.487261 | 8.4:-50691283 | MS.gene38909:CDS |
| ATGACTGCACCTCAAGCTGC+TGG | 0.490453 | 8.4:-50690199 | MS.gene38909:CDS |
| GGATGCTGGAACCATTCGTT+GGG | 0.497381 | 8.4:+50693368 | None:intergenic |
| GATATTGCTGGTCTTGTAAA+GGG | 0.502102 | 8.4:-50693333 | MS.gene38909:CDS |
| GTTTGTTGCATCAGCTAGAT+CGG | 0.502952 | 8.4:+50691959 | None:intergenic |
| TGATATTGACGTTATCAACT+TGG | 0.509555 | 8.4:-50692567 | MS.gene38909:CDS |
| TCGTTGGGATTTACTGAGAT+CGG | 0.510037 | 8.4:+50693383 | None:intergenic |
| ATTGTTGGTCTTCCTAATGT+TGG | 0.511892 | 8.4:-50695549 | MS.gene38909:CDS |
| TCTACAAACTCTATGGATGC+TGG | 0.511938 | 8.4:+50693354 | None:intergenic |
| GCTTTCTGAACTAGCGATTG+AGG | 0.523699 | 8.4:-50691326 | MS.gene38909:CDS |
| CATGAAACCCATTATATATG+TGG | 0.528753 | 8.4:-50691997 | MS.gene38909:CDS |
| GTGTTAGTGAAAGTGGTCTT+GGG | 0.530590 | 8.4:-50691276 | MS.gene38909:CDS |
| AGATATTGCTGGTCTTGTAA+AGG | 0.531314 | 8.4:-50693334 | MS.gene38909:CDS |
| AATGCAGATTGAGAAAAGAC+TGG | 0.536763 | 8.4:-50692275 | MS.gene38909:intron |
| AATTGTAACAATTTCAGCGC+AGG | 0.536813 | 8.4:-50691886 | MS.gene38909:intron |
| CTTCAACTGTTACAGGGACT+CGG | 0.538322 | 8.4:-50693159 | MS.gene38909:intron |
| ATTCATTCTGACTTTGAGAA+GGG | 0.546250 | 8.4:-50690172 | MS.gene38909:CDS |
| TGGATGCTGGAACCATTCGT+TGG | 0.546862 | 8.4:+50693367 | None:intergenic |
| AGAGGCAGAAAAGACTGCAT+TGG | 0.546937 | 8.4:-50692117 | MS.gene38909:CDS |
| ATTCGTGTAGCACTCTTGGA+TGG | 0.555782 | 8.4:-50692089 | MS.gene38909:CDS |
| TATTCATTCTGACTTTGAGA+AGG | 0.556078 | 8.4:-50690173 | MS.gene38909:CDS |
| CTTGTAAAGGGTGCAAGTCA+AGG | 0.556345 | 8.4:-50693321 | MS.gene38909:CDS |
| GATAACGTCAATATCAGACT+TGG | 0.564980 | 8.4:+50692574 | None:intergenic |
| GTACAATAGAGCCAAATGTA+GGG | 0.572299 | 8.4:-50693443 | MS.gene38909:CDS |
| ATAAGCATGAGTCTCAAAGC+TGG | 0.580496 | 8.4:-50695573 | None:intergenic |
| TGATGCTTACCGTCTCTGCT+CGG | 0.581066 | 8.4:+50690143 | None:intergenic |
| GTTAAGGTCACAGATCGTGC+AGG | 0.583415 | 8.4:+50692062 | None:intergenic |
| GACTTACGACGGCATTGAAG+AGG | 0.585086 | 8.4:+50695517 | None:intergenic |
| TATATATGTGGCAAATGTTG+CGG | 0.590385 | 8.4:-50691985 | MS.gene38909:CDS |
| AATGACATTATTCATGTGAA+CGG | 0.591318 | 8.4:-50692608 | MS.gene38909:CDS |
| TTTATCACATATTCGTGAGG+TGG | 0.594065 | 8.4:-50693127 | MS.gene38909:CDS |
| AAAGACTACATTGTACAAGA+AGG | 0.600557 | 8.4:-50688499 | MS.gene38909:CDS |
| AATGTATCCACAGGAGACAA+AGG | 0.607824 | 8.4:-50690771 | MS.gene38909:intron |
| ACTTACGACGGCATTGAAGA+GGG | 0.619986 | 8.4:+50695518 | None:intergenic |
| TGTTTGCAGTTGCGATCTGA+AGG | 0.620573 | 8.4:-50688523 | MS.gene38909:intron |
| GGGTTTCATCCGAGCAGAGA+CGG | 0.622621 | 8.4:-50690152 | MS.gene38909:intron |
| TGTTTAGGTTGAAAACGGAA+AGG | 0.629927 | 8.4:-50693490 | MS.gene38909:intron |
| ATAACGTCAATATCAGACTT+GGG | 0.632121 | 8.4:+50692575 | None:intergenic |
| TCTCAGTAAATCCCAACGAA+TGG | 0.635797 | 8.4:-50693379 | MS.gene38909:CDS |
| TGAATAACTCCAGCAGCTTG+AGG | 0.642652 | 8.4:+50690190 | None:intergenic |
| GGATTCACAATCTAAAGTCA+AGG | 0.643951 | 8.4:-50692227 | MS.gene38909:intron |
| AAAGGGTGCAAGTCAAGGCG+AGG | 0.653560 | 8.4:-50693316 | MS.gene38909:intron |
| ATCCACAGGAGACAAAGGCA+TGG | 0.678907 | 8.4:-50690766 | MS.gene38909:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 50688468 | 50695589 | 50688468 | ID=MS.gene38909 |
| chr8.4 | mRNA | 50688468 | 50695589 | 50688468 | ID=MS.gene38909.t1;Parent=MS.gene38909 |
| chr8.4 | exon | 50695524 | 50695589 | 50695524 | ID=MS.gene38909.t1.exon1;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50695524 | 50695589 | 50695524 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50693317 | 50693505 | 50693317 | ID=MS.gene38909.t1.exon2;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50693317 | 50693505 | 50693317 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50693113 | 50693166 | 50693113 | ID=MS.gene38909.t1.exon3;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50693113 | 50693166 | 50693113 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50692541 | 50692651 | 50692541 | ID=MS.gene38909.t1.exon4;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50692541 | 50692651 | 50692541 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50692228 | 50692290 | 50692228 | ID=MS.gene38909.t1.exon5;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50692228 | 50692290 | 50692228 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50691887 | 50692141 | 50691887 | ID=MS.gene38909.t1.exon6;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50691887 | 50692141 | 50691887 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50691213 | 50691359 | 50691213 | ID=MS.gene38909.t1.exon7;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50691213 | 50691359 | 50691213 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50690753 | 50690780 | 50690753 | ID=MS.gene38909.t1.exon8;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50690753 | 50690780 | 50690753 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50690153 | 50690223 | 50690153 | ID=MS.gene38909.t1.exon9;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50690153 | 50690223 | 50690153 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50688621 | 50688680 | 50688621 | ID=MS.gene38909.t1.exon10;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50688621 | 50688680 | 50688621 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| chr8.4 | exon | 50688468 | 50688536 | 50688468 | ID=MS.gene38909.t1.exon11;Parent=MS.gene38909.t1 |
| chr8.4 | CDS | 50688468 | 50688536 | 50688468 | ID=cds.MS.gene38909.t1;Parent=MS.gene38909.t1 |
| Gene Sequence |
| Protein sequence |
