Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38917.t1 | RHN40751.1 | 98.9 | 370 | 4 | 0 | 1 | 370 | 48 | 417 | 4.40E-175 | 624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38917.t1 | P37518 | 53.2 | 370 | 169 | 2 | 1 | 370 | 1 | 366 | 3.7e-106 | 386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38917.t1 | A0A396GKP1 | 98.9 | 370 | 4 | 0 | 1 | 370 | 48 | 417 | 3.2e-175 | 624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene38917 | 0.820389 | 7.04E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene38917 | 0.818524 | 1.87E-52 | -1.69E-46 |
| MS.gene049284 | MS.gene38917 | 0.835114 | 2.03E-56 | -1.69E-46 |
| MS.gene049351 | MS.gene38917 | 0.860819 | 1.58E-63 | -1.69E-46 |
| MS.gene049427 | MS.gene38917 | 0.86692 | 2.00E-65 | -1.69E-46 |
| MS.gene049491 | MS.gene38917 | 0.849844 | 2.49E-60 | -1.69E-46 |
| MS.gene049614 | MS.gene38917 | 0.808458 | 3.07E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene38917 | 0.847282 | 1.28E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene38917 | 0.842147 | 3.09E-58 | -1.69E-46 |
| MS.gene049758 | MS.gene38917 | 0.822271 | 2.59E-53 | -1.69E-46 |
| MS.gene049760 | MS.gene38917 | 0.807669 | 4.51E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene38917 | 0.829708 | 4.43E-55 | -1.69E-46 |
| MS.gene050076 | MS.gene38917 | 0.886591 | 2.99E-72 | -1.69E-46 |
| MS.gene050099 | MS.gene38917 | 0.810124 | 1.35E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene38917 | 0.868545 | 6.03E-66 | -1.69E-46 |
| MS.gene050397 | MS.gene38917 | 0.859334 | 4.44E-63 | -1.69E-46 |
| MS.gene050432 | MS.gene38917 | 0.87022 | 1.72E-66 | -1.69E-46 |
| MS.gene050464 | MS.gene38917 | 0.815467 | 9.11E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene38917 | 0.85495 | 8.75E-62 | -1.69E-46 |
| MS.gene050593 | MS.gene38917 | 0.823945 | 1.05E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene38917 | 0.830417 | 2.97E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene38917 | 0.851949 | 6.36E-61 | -1.69E-46 |
| MS.gene050770 | MS.gene38917 | 0.852522 | 4.37E-61 | -1.69E-46 |
| MS.gene050772 | MS.gene38917 | 0.801194 | 1.01E-48 | -1.69E-46 |
| MS.gene050783 | MS.gene38917 | 0.823298 | 1.49E-53 | -1.69E-46 |
| MS.gene050812 | MS.gene38917 | 0.823588 | 1.28E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene38917 | 0.892714 | 1.23E-74 | -1.69E-46 |
| MS.gene05105 | MS.gene38917 | 0.853359 | 2.52E-61 | -1.69E-46 |
| MS.gene051228 | MS.gene38917 | 0.807788 | 4.26E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene38917 | 0.856558 | 2.97E-62 | -1.69E-46 |
| MS.gene051471 | MS.gene38917 | 0.847073 | 1.46E-59 | -1.69E-46 |
| MS.gene051582 | MS.gene38917 | 0.801915 | 7.19E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene38917 | 0.838517 | 2.74E-57 | -1.69E-46 |
| MS.gene051692 | MS.gene38917 | 0.815857 | 7.46E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene38917 | 0.808783 | 2.61E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene38917 | 0.823279 | 1.51E-53 | -1.69E-46 |
| MS.gene051877 | MS.gene38917 | 0.837105 | 6.32E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene38917 | 0.874851 | 4.89E-68 | -1.69E-46 |
| MS.gene052188 | MS.gene38917 | 0.842348 | 2.73E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene38917 | 0.829508 | 4.95E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene38917 | 0.816863 | 4.44E-52 | -1.69E-46 |
| MS.gene052290 | MS.gene38917 | 0.838998 | 2.06E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene38917 | 0.871507 | 6.48E-67 | -1.69E-46 |
| MS.gene052322 | MS.gene38917 | 0.830817 | 2.37E-55 | -1.69E-46 |
| MS.gene052326 | MS.gene38917 | 0.881821 | 1.75E-70 | -1.69E-46 |
| MS.gene052340 | MS.gene38917 | 0.83037 | 3.05E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene38917 | 0.844548 | 7.06E-59 | -1.69E-46 |
| MS.gene052421 | MS.gene38917 | 0.826874 | 2.14E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene38917 | 0.816044 | 6.78E-52 | -1.69E-46 |
| MS.gene052484 | MS.gene38917 | 0.816867 | 4.43E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene38917 | 0.838826 | 2.28E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene38917 | 0.802651 | 5.07E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene38917 | 0.801384 | 9.24E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene38917 | 0.847807 | 9.15E-60 | -1.69E-46 |
| MS.gene053104 | MS.gene38917 | 0.853752 | 1.94E-61 | -1.69E-46 |
| MS.gene053107 | MS.gene38917 | 0.830714 | 2.51E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene38917 | 0.806841 | 6.76E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene38917 | 0.841327 | 5.08E-58 | -1.69E-46 |
| MS.gene053213 | MS.gene38917 | 0.807372 | 5.22E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene38917 | 0.87884 | 2.03E-69 | -1.69E-46 |
| MS.gene053557 | MS.gene38917 | 0.809525 | 1.81E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene38917 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene38917 | 0.80305 | 4.19E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene38917 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene38917 | 0.84472 | 6.35E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene38917 | 0.849326 | 3.47E-60 | -1.69E-46 |
| MS.gene054376 | MS.gene38917 | 0.859317 | 4.50E-63 | -1.69E-46 |
| MS.gene05455 | MS.gene38917 | 0.826003 | 3.44E-54 | -1.69E-46 |
| MS.gene054802 | MS.gene38917 | 0.864742 | 9.77E-65 | -1.69E-46 |
| MS.gene054803 | MS.gene38917 | 0.861145 | 1.26E-63 | -1.69E-46 |
| MS.gene054804 | MS.gene38917 | 0.864549 | 1.12E-64 | -1.69E-46 |
| MS.gene054955 | MS.gene38917 | 0.847021 | 1.51E-59 | -1.69E-46 |
| MS.gene05505 | MS.gene38917 | 0.841357 | 4.99E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene38917 | 0.846118 | 2.66E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene38917 | 0.809484 | 1.85E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene38917 | 0.819566 | 1.09E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene38917 | 0.883882 | 3.08E-71 | -1.69E-46 |
| MS.gene055390 | MS.gene38917 | 0.84652 | 2.06E-59 | -1.69E-46 |
| MS.gene055397 | MS.gene38917 | 0.852107 | 5.73E-61 | -1.69E-46 |
| MS.gene055412 | MS.gene38917 | 0.829387 | 5.30E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene38917 | 0.855168 | 7.56E-62 | -1.69E-46 |
| MS.gene055428 | MS.gene38917 | 0.845165 | 4.81E-59 | -1.69E-46 |
| MS.gene055499 | MS.gene38917 | 0.863101 | 3.17E-64 | -1.69E-46 |
| MS.gene055647 | MS.gene38917 | 0.833031 | 6.74E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene38917 | 0.801311 | 9.56E-49 | -1.69E-46 |
| MS.gene055896 | MS.gene38917 | 0.856677 | 2.74E-62 | -1.69E-46 |
| MS.gene05592 | MS.gene38917 | 0.835973 | 1.23E-56 | -1.69E-46 |
| MS.gene056191 | MS.gene38917 | 0.842147 | 3.09E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene38917 | 0.847756 | 9.46E-60 | -1.69E-46 |
| MS.gene056410 | MS.gene38917 | 0.853564 | 2.20E-61 | -1.69E-46 |
| MS.gene056452 | MS.gene38917 | 0.816586 | 5.12E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene38917 | 0.820068 | 8.34E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene38917 | 0.855837 | 4.82E-62 | -1.69E-46 |
| MS.gene056612 | MS.gene38917 | 0.826358 | 2.83E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene38917 | 0.842104 | 3.17E-58 | -1.69E-46 |
| MS.gene057011 | MS.gene38917 | 0.854356 | 1.30E-61 | -1.69E-46 |
| MS.gene05702 | MS.gene38917 | 0.845346 | 4.30E-59 | -1.69E-46 |
| MS.gene057123 | MS.gene38917 | 0.856027 | 4.25E-62 | -1.69E-46 |
| MS.gene057129 | MS.gene38917 | 0.85758 | 1.48E-62 | -1.69E-46 |
| MS.gene057146 | MS.gene38917 | 0.884424 | 1.94E-71 | -1.69E-46 |
| MS.gene057295 | MS.gene38917 | 0.840552 | 8.12E-58 | -1.69E-46 |
| MS.gene05733 | MS.gene38917 | 0.822056 | 2.91E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene38917 | 0.835037 | 2.12E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene38917 | 0.800124 | 1.67E-48 | -1.69E-46 |
| MS.gene057450 | MS.gene38917 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene38917 | 0.823935 | 1.06E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene38917 | 0.827427 | 1.57E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene38917 | 0.801828 | 7.49E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene38917 | 0.85564 | 5.51E-62 | -1.69E-46 |
| MS.gene058006 | MS.gene38917 | 0.80791 | 4.01E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene38917 | 0.862747 | 4.07E-64 | -1.69E-46 |
| MS.gene058082 | MS.gene38917 | 0.837786 | 4.23E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene38917 | 0.841577 | 4.37E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene38917 | 0.855386 | 6.53E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene38917 | 0.867904 | 9.70E-66 | -1.69E-46 |
| MS.gene058365 | MS.gene38917 | 0.812339 | 4.46E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene38917 | 0.924727 | 4.78E-90 | -1.69E-46 |
| MS.gene058787 | MS.gene38917 | 0.824173 | 9.31E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene38917 | 0.808471 | 3.05E-50 | -1.69E-46 |
| MS.gene058993 | MS.gene38917 | 0.813542 | 2.43E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene38917 | 0.806039 | 9.98E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene38917 | 0.869717 | 2.51E-66 | -1.69E-46 |
| MS.gene059326 | MS.gene38917 | 0.820225 | 7.68E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene38917 | 0.840868 | 6.71E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene38917 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene38917 | 0.873151 | 1.84E-67 | -1.69E-46 |
| MS.gene059597 | MS.gene38917 | 0.893819 | 4.41E-75 | -1.69E-46 |
| MS.gene05959 | MS.gene38917 | 0.829566 | 4.79E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene38917 | 0.877822 | 4.62E-69 | -1.69E-46 |
| MS.gene059688 | MS.gene38917 | 0.888536 | 5.41E-73 | -1.69E-46 |
| MS.gene059692 | MS.gene38917 | 0.886084 | 4.65E-72 | -1.69E-46 |
| MS.gene059695 | MS.gene38917 | 0.890054 | 1.39E-73 | -1.69E-46 |
| MS.gene059708 | MS.gene38917 | 0.826501 | 2.62E-54 | -1.69E-46 |
| MS.gene059711 | MS.gene38917 | 0.811676 | 6.21E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene38917 | 0.809623 | 1.73E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene38917 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene38917 | 0.825544 | 4.42E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene38917 | 0.822748 | 2.01E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene38917 | 0.894045 | 3.57E-75 | -1.69E-46 |
| MS.gene060005 | MS.gene38917 | 0.810404 | 1.17E-50 | -1.69E-46 |
| MS.gene060193 | MS.gene38917 | 0.823892 | 1.08E-53 | -1.69E-46 |
| MS.gene06037 | MS.gene38917 | 0.825714 | 4.03E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene38917 | 0.838061 | 3.60E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene38917 | 0.897808 | 9.81E-77 | -1.69E-46 |
| MS.gene060818 | MS.gene38917 | 0.853883 | 1.78E-61 | -1.69E-46 |
| MS.gene060837 | MS.gene38917 | 0.817584 | 3.06E-52 | -1.69E-46 |
| MS.gene06090 | MS.gene38917 | 0.831419 | 1.69E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene38917 | 0.851394 | 9.13E-61 | -1.69E-46 |
| MS.gene061049 | MS.gene38917 | 0.851984 | 6.22E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene38917 | -0.865433 | 5.93E-65 | -1.69E-46 |
| MS.gene061200 | MS.gene38917 | 0.882679 | 8.51E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02106 | MS.gene38917 | PPI |
| MS.gene003309 | MS.gene38917 | PPI |
| MS.gene74535 | MS.gene38917 | PPI |
| MS.gene03062 | MS.gene38917 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38917.t1 | MTR_2g030370 | 41.892 | 370 | 209 | 5 | 2 | 370 | 24 | 388 | 2.20e-93 | 285 |
| MS.gene38917.t1 | MTR_2g030335 | 60.577 | 104 | 40 | 1 | 3 | 106 | 25 | 127 | 1.30e-33 | 124 |
| MS.gene38917.t1 | MTR_2g019790 | 35.714 | 140 | 59 | 5 | 6 | 143 | 322 | 432 | 7.46e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38917.t1 | AT1G56050 | 85.135 | 370 | 55 | 0 | 1 | 370 | 52 | 421 | 0.0 | 647 |
| MS.gene38917.t1 | AT1G30580 | 40.650 | 369 | 215 | 3 | 2 | 370 | 24 | 388 | 3.11e-89 | 274 |
Find 70 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGCAACATATGATCTTT+TGG | 0.234785 | 8.4:-50605953 | MS.gene38917:CDS |
| AACATTTGCCACATATATAA+TGG | 0.237147 | 8.4:+50606697 | None:intergenic |
| GATCATATGTTGCTCTAATT+AGG | 0.267758 | 8.4:+50605959 | None:intergenic |
| TTTGGCTCTATTGTACAAAA+AGG | 0.279235 | 8.4:+50608128 | None:intergenic |
| CTTGGTGCAGCACGAGAAAA+AGG | 0.311357 | 8.4:-50603222 | MS.gene38917:CDS |
| CACATATATAATGGGTTTCA+TGG | 0.318050 | 8.4:+50606706 | None:intergenic |
| AGCAATATCTACAAACTCTA+TGG | 0.327069 | 8.4:+50608025 | None:intergenic |
| AACAAACAATGATTACGTTA+TGG | 0.354064 | 8.4:-50606651 | MS.gene38917:CDS |
| TACAATGACTTTGTTGCTGC+TGG | 0.356603 | 8.4:-50603249 | MS.gene38917:CDS |
| ACATTTGCCACATATATAAT+GGG | 0.363510 | 8.4:+50606698 | None:intergenic |
| ACAAACAATGATTACGTTAT+GGG | 0.375351 | 8.4:-50606650 | MS.gene38917:CDS |
| AGCACTTGGAGACGAGAATC+TGG | 0.379539 | 8.4:+50608086 | None:intergenic |
| ATAGATAAACACCTGAAGTA+TGG | 0.386070 | 8.4:+50607793 | None:intergenic |
| ATAGAGTTTGTAGATATTGC+TGG | 0.390908 | 8.4:-50608023 | MS.gene38917:CDS |
| TTTGTTGCTGCTGGTTCACT+TGG | 0.410289 | 8.4:-50603240 | MS.gene38917:CDS |
| AGGGTAGATTTGCCAACATT+AGG | 0.411876 | 8.4:+50610303 | None:intergenic |
| CTTGACTTGCACCCTTTACA+AGG | 0.415044 | 8.4:+50608000 | None:intergenic |
| CAAGAATATTTGAAATCTCT+TGG | 0.415773 | 8.4:-50606006 | MS.gene38917:CDS |
| TGAGGTGGACTCCATACTTC+AGG | 0.420128 | 8.4:-50607804 | MS.gene38917:intron |
| AGTCTCAAAGCTGGTATTGT+TGG | 0.448030 | 8.4:-50610330 | MS.gene38917:CDS |
| GGTGTTAGTGAAAGTGGTCT+TGG | 0.465003 | 8.4:-50605985 | MS.gene38917:CDS |
| ACAGCAACAATCCCTACATT+TGG | 0.466715 | 8.4:+50608110 | None:intergenic |
| TACTGAGATCGGAGAGCACT+TGG | 0.466988 | 8.4:+50608072 | None:intergenic |
| ATGACATTATTCATGTGAAC+GGG | 0.475473 | 8.4:-50607315 | MS.gene38917:CDS |
| TGTACAATAGAGCCAAATGT+AGG | 0.476002 | 8.4:-50608122 | MS.gene38917:CDS |
| AAGGCATGGACAATACTTGC+AGG | 0.478540 | 8.4:-50605460 | MS.gene38917:intron |
| TCACATGTTTAGGTTGAAAA+CGG | 0.480742 | 8.4:-50608173 | MS.gene38917:intron |
| GTTGCATCTGAGTTGCAGTC+TGG | 0.485016 | 8.4:-50606617 | MS.gene38917:CDS |
| TCTCTTGGTGTTAGTGAAAG+TGG | 0.487261 | 8.4:-50605991 | MS.gene38917:CDS |
| ATGACTGCACCTCAAGCTGC+TGG | 0.490453 | 8.4:-50604907 | MS.gene38917:CDS |
| TCGTTGAGATTTACTGAGAT+CGG | 0.494616 | 8.4:+50608061 | None:intergenic |
| GATATTGCTGGCCTTGTAAA+GGG | 0.495696 | 8.4:-50608011 | MS.gene38917:CDS |
| GTTTGTTGCATCAGCTAGAT+CGG | 0.502952 | 8.4:+50606667 | None:intergenic |
| TGATATTGACGTTATCAACT+TGG | 0.509555 | 8.4:-50607275 | MS.gene38917:CDS |
| TCTACAAACTCTATGGATGC+TGG | 0.511938 | 8.4:+50608032 | None:intergenic |
| ATTGTTGGTCTTCCTAATGT+TGG | 0.520640 | 8.4:-50610315 | MS.gene38917:CDS |
| GCTTTCTGAACTAGCGATTG+AGG | 0.523699 | 8.4:-50606034 | MS.gene38917:CDS |
| AGATATTGCTGGCCTTGTAA+AGG | 0.526607 | 8.4:-50608012 | MS.gene38917:CDS |
| CATGAAACCCATTATATATG+TGG | 0.528753 | 8.4:-50606705 | MS.gene38917:CDS |
| GTGTTAGTGAAAGTGGTCTT+GGG | 0.530590 | 8.4:-50605984 | MS.gene38917:CDS |
| AATGCAGATTGAGAAAAGAC+TGG | 0.536763 | 8.4:-50606983 | MS.gene38917:intron |
| AATTGTAACAATTTCAGCGC+AGG | 0.536813 | 8.4:-50606594 | MS.gene38917:intron |
| CTTCAACTGTTACAGGGTCT+CGG | 0.538322 | 8.4:-50607851 | MS.gene38917:intron |
| ATTCATTCTGACTTTGAGAA+GGG | 0.546250 | 8.4:-50604880 | MS.gene38917:CDS |
| AGAGGCAGAAAAGACTGCAT+TGG | 0.546937 | 8.4:-50606825 | MS.gene38917:CDS |
| CTTGTAAAGGGTGCAAGTCA+AGG | 0.552602 | 8.4:-50607999 | MS.gene38917:CDS |
| ATTCGTGTAGCACTCTTGGA+TGG | 0.555782 | 8.4:-50606797 | MS.gene38917:CDS |
| TATTCATTCTGACTTTGAGA+AGG | 0.556078 | 8.4:-50604881 | MS.gene38917:CDS |
| GATAACGTCAATATCAGACT+TGG | 0.564980 | 8.4:+50607282 | None:intergenic |
| TTCCCTCTCAAAATCTGTCA+AGG | 0.566044 | 8.4:+50606754 | None:intergenic |
| GTACAATAGAGCCAAATGTA+GGG | 0.572299 | 8.4:-50608121 | MS.gene38917:CDS |
| ATAAGCATGAGTCTCAAAGC+TGG | 0.580496 | 8.4:-50610339 | None:intergenic |
| TGATGCTTACCGTCTCTGCT+CGG | 0.581066 | 8.4:+50604851 | None:intergenic |
| GACTTACAACGGCATTGAAG+AGG | 0.582790 | 8.4:+50610283 | None:intergenic |
| TATATATGTGGCAAATGTTG+CGG | 0.590385 | 8.4:-50606693 | MS.gene38917:CDS |
| AATGACATTATTCATGTGAA+CGG | 0.591318 | 8.4:-50607316 | MS.gene38917:CDS |
| GTCAAGGTCACAGATCGTGC+AGG | 0.592414 | 8.4:+50606770 | None:intergenic |
| TTTATCACATATTCGTGAGG+TGG | 0.594065 | 8.4:-50607819 | MS.gene38917:CDS |
| TCTCAGTAAATCTCAACGAA+TGG | 0.599820 | 8.4:-50608057 | MS.gene38917:CDS |
| AAAGACTACATTGTACAAGA+AGG | 0.600557 | 8.4:-50603095 | MS.gene38917:CDS |
| ACTTACAACGGCATTGAAGA+GGG | 0.607290 | 8.4:+50610284 | None:intergenic |
| AATGTATCCACAGGAGACAA+AGG | 0.607824 | 8.4:-50605479 | MS.gene38917:intron |
| GGGTTTCATCCGAGCAGAGA+CGG | 0.622621 | 8.4:-50604860 | MS.gene38917:intron |
| TGTTTAGGTTGAAAACGGAA+AGG | 0.629927 | 8.4:-50608168 | MS.gene38917:intron |
| ATAACGTCAATATCAGACTT+GGG | 0.632121 | 8.4:+50607283 | None:intergenic |
| TGTTTGCAGTTGCGATCTGA+AGG | 0.636055 | 8.4:-50603119 | MS.gene38917:intron |
| TGAATAACTCCAGCAGCTTG+AGG | 0.642652 | 8.4:+50604898 | None:intergenic |
| GGATTCACAATCTAAAGTCA+AGG | 0.643951 | 8.4:-50606935 | MS.gene38917:intron |
| AAAGGGTGCAAGTCAAGGCG+AGG | 0.653560 | 8.4:-50607994 | MS.gene38917:intron |
| ATCCACAGGAGACAAAGGCA+TGG | 0.678907 | 8.4:-50605474 | MS.gene38917:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 50603064 | 50610355 | 50603064 | ID=MS.gene38917 |
| chr8.4 | mRNA | 50603064 | 50610355 | 50603064 | ID=MS.gene38917.t1;Parent=MS.gene38917 |
| chr8.4 | exon | 50610290 | 50610355 | 50610290 | ID=MS.gene38917.t1.exon1;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50610290 | 50610355 | 50610290 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50607995 | 50608183 | 50607995 | ID=MS.gene38917.t1.exon2;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50607995 | 50608183 | 50607995 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50607805 | 50607858 | 50607805 | ID=MS.gene38917.t1.exon3;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50607805 | 50607858 | 50607805 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50607249 | 50607359 | 50607249 | ID=MS.gene38917.t1.exon4;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50607249 | 50607359 | 50607249 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50606936 | 50606998 | 50606936 | ID=MS.gene38917.t1.exon5;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50606936 | 50606998 | 50606936 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50606595 | 50606849 | 50606595 | ID=MS.gene38917.t1.exon6;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50606595 | 50606849 | 50606595 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50605921 | 50606067 | 50605921 | ID=MS.gene38917.t1.exon7;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50605921 | 50606067 | 50605921 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50605461 | 50605488 | 50605461 | ID=MS.gene38917.t1.exon8;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50605461 | 50605488 | 50605461 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50604861 | 50604931 | 50604861 | ID=MS.gene38917.t1.exon9;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50604861 | 50604931 | 50604861 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50603218 | 50603277 | 50603218 | ID=MS.gene38917.t1.exon10;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50603218 | 50603277 | 50603218 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| chr8.4 | exon | 50603064 | 50603132 | 50603064 | ID=MS.gene38917.t1.exon11;Parent=MS.gene38917.t1 |
| chr8.4 | CDS | 50603064 | 50603132 | 50603064 | ID=cds.MS.gene38917.t1;Parent=MS.gene38917.t1 |
| Gene Sequence |
| Protein sequence |
