Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05873.t1 | XP_003630727.1 | 99.8 | 591 | 1 | 0 | 1 | 591 | 1 | 591 | 0.00E+00 | 1175.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05873.t1 | P51615 | 84.6 | 591 | 91 | 0 | 1 | 591 | 1 | 591 | 5.6e-298 | 1024.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05873.t1 | G7L7H0 | 99.8 | 591 | 1 | 0 | 1 | 591 | 1 | 591 | 0.0e+00 | 1175.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05873 | MS.gene69799 | 0.809747 | 1.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023832 | MS.gene05873 | PPI |
| MS.gene65276 | MS.gene05873 | PPI |
| MS.gene08581 | MS.gene05873 | PPI |
| MS.gene05873 | MS.gene39348 | PPI |
| MS.gene05873 | MS.gene27682 | PPI |
| MS.gene52200 | MS.gene05873 | PPI |
| MS.gene39666 | MS.gene05873 | PPI |
| MS.gene05873 | MS.gene022694 | PPI |
| MS.gene05873 | MS.gene055731 | PPI |
| MS.gene049858 | MS.gene05873 | PPI |
| MS.gene05873 | MS.gene020057 | PPI |
| MS.gene05873 | MS.gene055730 | PPI |
| MS.gene05873 | MS.gene27681 | PPI |
| MS.gene58341 | MS.gene05873 | PPI |
| MS.gene004152 | MS.gene05873 | PPI |
| MS.gene055729 | MS.gene05873 | PPI |
| MS.gene05873 | MS.gene27680 | PPI |
| MS.gene019525 | MS.gene05873 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05873.t1 | MTR_8g102620 | 99.831 | 591 | 1 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1216 |
| MS.gene05873.t1 | MTR_3g110330 | 84.764 | 571 | 87 | 0 | 21 | 591 | 8 | 578 | 0.0 | 1013 |
| MS.gene05873.t1 | MTR_2g101040 | 78.511 | 591 | 127 | 0 | 1 | 591 | 85 | 675 | 0.0 | 967 |
| MS.gene05873.t1 | MTR_8g014390 | 78.238 | 579 | 126 | 0 | 13 | 591 | 10 | 588 | 0.0 | 954 |
| MS.gene05873.t1 | MTR_2g101040 | 75.121 | 619 | 126 | 1 | 1 | 591 | 51 | 669 | 0.0 | 953 |
| MS.gene05873.t1 | MTR_2g101040 | 78.657 | 581 | 124 | 0 | 1 | 581 | 51 | 631 | 0.0 | 951 |
| MS.gene05873.t1 | MTR_2g101040 | 78.863 | 563 | 119 | 0 | 1 | 563 | 51 | 613 | 0.0 | 920 |
| MS.gene05873.t1 | MTR_7g076650 | 41.549 | 568 | 297 | 9 | 52 | 587 | 30 | 594 | 4.51e-147 | 437 |
| MS.gene05873.t1 | MTR_8g009500 | 42.032 | 571 | 291 | 10 | 54 | 587 | 53 | 620 | 2.86e-145 | 434 |
| MS.gene05873.t1 | MTR_8g032040 | 40.917 | 567 | 302 | 9 | 52 | 587 | 33 | 597 | 1.29e-144 | 431 |
| MS.gene05873.t1 | MTR_7g076650 | 38.944 | 606 | 297 | 10 | 52 | 587 | 30 | 632 | 9.21e-140 | 420 |
| MS.gene05873.t1 | MTR_7g076650 | 43.177 | 491 | 256 | 7 | 52 | 521 | 30 | 518 | 7.08e-136 | 406 |
| MS.gene05873.t1 | MTR_8g009500 | 42.436 | 509 | 263 | 9 | 106 | 587 | 21 | 526 | 3.44e-131 | 394 |
| MS.gene05873.t1 | MTR_8g009500 | 43.016 | 451 | 230 | 7 | 54 | 479 | 53 | 501 | 3.58e-122 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05873.t1 | AT5G25880 | 80.210 | 571 | 113 | 0 | 21 | 591 | 18 | 588 | 0.0 | 982 |
| MS.gene05873.t1 | AT1G79750 | 79.102 | 579 | 121 | 0 | 13 | 591 | 68 | 646 | 0.0 | 976 |
| MS.gene05873.t1 | AT2G19900 | 80.862 | 580 | 111 | 0 | 12 | 591 | 2 | 581 | 0.0 | 967 |
| MS.gene05873.t1 | AT5G11670 | 79.518 | 581 | 117 | 1 | 11 | 591 | 10 | 588 | 0.0 | 962 |
| MS.gene05873.t1 | AT5G25880 | 80.479 | 543 | 106 | 0 | 21 | 563 | 18 | 560 | 0.0 | 933 |
| MS.gene05873.t1 | AT2G19900 | 83.195 | 482 | 81 | 0 | 110 | 591 | 1 | 482 | 0.0 | 823 |
| MS.gene05873.t1 | AT5G25880 | 81.081 | 444 | 84 | 0 | 21 | 464 | 18 | 461 | 0.0 | 775 |
| MS.gene05873.t1 | AT2G13560 | 42.657 | 572 | 290 | 10 | 52 | 587 | 46 | 615 | 1.03e-149 | 445 |
| MS.gene05873.t1 | AT4G00570 | 40.459 | 566 | 303 | 9 | 52 | 587 | 39 | 600 | 5.98e-144 | 430 |
Find 149 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCAGATTCCTCTCATTT+TGG | 0.129337 | 4.4:+3438749 | MS.gene05873:intron |
| TGTATATGCTCCCGTATTTC+TGG | 0.180374 | 4.4:-3436494 | None:intergenic |
| AACTGACGGTGAGCGGATTT+TGG | 0.205691 | 4.4:+3436707 | MS.gene05873:CDS |
| GGGAATTCCTGTTGGTAAAT+TGG | 0.238319 | 4.4:+3437111 | MS.gene05873:CDS |
| ATCTTCCCAGGCTTTGGTTT+GGG | 0.270502 | 4.4:+3439111 | MS.gene05873:CDS |
| CCGCCACCAACGGCGGATCT+TGG | 0.298243 | 4.4:-3435355 | None:intergenic |
| GCTTACATCTTCCCAGGCTT+TGG | 0.317558 | 4.4:+3439105 | MS.gene05873:CDS |
| GACCGAGGAGAACTACAAAA+AGG | 0.333516 | 4.4:+3439332 | MS.gene05873:CDS |
| GTCCCCACATCGATTGTAAC+TGG | 0.354517 | 4.4:-3437295 | None:intergenic |
| CATCTTCCCAGGCTTTGGTT+TGG | 0.357949 | 4.4:+3439110 | MS.gene05873:CDS |
| AAAGGCAAAACTTATTATTC+TGG | 0.358566 | 4.4:+3438987 | MS.gene05873:CDS |
| CTTAGACAAAAGAGGGCAAC+TGG | 0.358645 | 4.4:+3437358 | MS.gene05873:CDS |
| TTTGCAAAGGAACCTCATAT+TGG | 0.377650 | 4.4:-3436245 | None:intergenic |
| CGCCACCAACGGCGGATCTT+GGG | 0.383451 | 4.4:-3435354 | None:intergenic |
| GGGTACCACCAATCAACTTC+AGG | 0.383890 | 4.4:-3437861 | None:intergenic |
| TGTGGCCATGATGGACCTTC+AGG | 0.388311 | 4.4:+3436272 | MS.gene05873:CDS |
| TGGGAAGATGTAAGCATTGT+TGG | 0.397937 | 4.4:-3439097 | None:intergenic |
| AAGAGAGTCGTAAGAAGATA+TGG | 0.399119 | 4.4:+3438239 | MS.gene05873:CDS |
| TTTGAATTGCTTGCAAAATA+CGG | 0.400987 | 4.4:+3437685 | MS.gene05873:CDS |
| ATGTGCATCCCTCTCTTTCT+CGG | 0.401753 | 4.4:-3436049 | None:intergenic |
| ACAACCGGAGTATATACAAT+TGG | 0.408892 | 4.4:-3436459 | None:intergenic |
| TTCAACACTTCAAGAAGCCT+TGG | 0.417822 | 4.4:+3438415 | MS.gene05873:CDS |
| CCCCTCTGTACCGCAACTAT+AGG | 0.418903 | 4.4:+3439608 | MS.gene05873:CDS |
| CACACTCCTAGATGCTGTTA+AGG | 0.419044 | 4.4:+3438461 | MS.gene05873:CDS |
| ATTGTATATACTCCGGTTGT+TGG | 0.426627 | 4.4:+3436462 | MS.gene05873:CDS |
| TTGTATTCAACAGGATCAAA+TGG | 0.426872 | 4.4:-3438966 | None:intergenic |
| ACATTCCTCTTCCTCGGTGC+TGG | 0.428848 | 4.4:+3437895 | MS.gene05873:CDS |
| AAACTATAACCTGAAGTTGC+TGG | 0.433465 | 4.4:-3436107 | None:intergenic |
| TGTCAGCAGCCAGCAACTTC+AGG | 0.433953 | 4.4:+3436098 | MS.gene05873:CDS |
| TTGATACCTTAACAGCATCT+AGG | 0.434707 | 4.4:-3438467 | None:intergenic |
| ACTGCAGCTGTTGTTCTAGC+TGG | 0.437531 | 4.4:+3437826 | MS.gene05873:CDS |
| TTATGATTTCAGGCAGGAAC+TGG | 0.438073 | 4.4:+3438054 | MS.gene05873:intron |
| TTCTTACGACTCTCTTCTAT+AGG | 0.439698 | 4.4:-3438232 | None:intergenic |
| GAGCATATACAAGCGTCCTC+AGG | 0.443018 | 4.4:+3436506 | MS.gene05873:CDS |
| CTCAGACTGTGAGGTTGGAT+TGG | 0.448482 | 4.4:-3438778 | None:intergenic |
| TACAAAGCCAATTTACCAAC+AGG | 0.449248 | 4.4:-3437118 | None:intergenic |
| CCAAGATCCGCCGTTGGTGG+CGG | 0.452149 | 4.4:+3435355 | MS.gene05873:CDS |
| GGTGAGGCTTGCCAGAAATA+CGG | 0.457098 | 4.4:+3436483 | MS.gene05873:CDS |
| GCACAACATCCGCCAATATG+AGG | 0.461834 | 4.4:+3436233 | MS.gene05873:CDS |
| ACAGTTCTGATTGGATCATC+AGG | 0.464456 | 4.4:+3438582 | MS.gene05873:CDS |
| GCATCTAGGAGTGTGCTAAC+AGG | 0.464697 | 4.4:-3438453 | None:intergenic |
| ATCAAGCCTACAGTTCTGAT+TGG | 0.468764 | 4.4:+3438573 | MS.gene05873:CDS |
| TGGTTTGGGTATAGTGATGT+CGG | 0.471357 | 4.4:+3439125 | MS.gene05873:CDS |
| CTTCTCCAGCACCGAGGAAG+AGG | 0.475135 | 4.4:-3437900 | None:intergenic |
| TAGAGATGGTGAGTCGGTGC+TGG | 0.475443 | 4.4:+3435324 | MS.gene05873:CDS |
| CTCGGTCACTTGCTTCGCCA+AGG | 0.475592 | 4.4:-3439316 | None:intergenic |
| GGTTTGGGTATAGTGATGTC+GGG | 0.476580 | 4.4:+3439126 | MS.gene05873:CDS |
| CACACCTAGTTCATATGCCT+TGG | 0.478256 | 4.4:-3439421 | None:intergenic |
| CTTGGACCTTCTCTGTTGCC+AGG | 0.483919 | 4.4:+3435431 | MS.gene05873:CDS |
| TGCTGACAGTGGGAGGTAAG+AGG | 0.486932 | 4.4:-3436083 | None:intergenic |
| TCAACACTTCAAGAAGCCTT+GGG | 0.487002 | 4.4:+3438416 | MS.gene05873:CDS |
| TGGCAAGCCTCACCAACAAC+CGG | 0.487891 | 4.4:-3436474 | None:intergenic |
| CAAAACTTATTATTCTGGCC+AGG | 0.488294 | 4.4:+3438992 | MS.gene05873:CDS |
| ACTATACCCAAACCAAAGCC+TGG | 0.496340 | 4.4:-3439117 | None:intergenic |
| AGGATCAACTTGTCACCCCT+TGG | 0.496562 | 4.4:+3435413 | MS.gene05873:CDS |
| AGCTGCAAATGTTGCTGCCA+AGG | 0.499193 | 4.4:+3439404 | MS.gene05873:CDS |
| GCATACTTGACAAGATTCTC+AGG | 0.501166 | 4.4:-3439568 | None:intergenic |
| GCAAGCCCTTTGTTGTATTG+TGG | 0.501797 | 4.4:-3436021 | None:intergenic |
| GTGAGGCTTGCCAGAAATAC+GGG | 0.504652 | 4.4:+3436484 | MS.gene05873:CDS |
| TATGGTTGCAGCGGAAGCCT+TGG | 0.505776 | 4.4:+3439299 | MS.gene05873:intron |
| AGCAACATTTGCAGCTATGT+TGG | 0.509394 | 4.4:-3439397 | None:intergenic |
| ACCTATAGTTGCGGTACAGA+GGG | 0.514198 | 4.4:-3439609 | None:intergenic |
| GCAAAGGAACCTCATATTGG+CGG | 0.516748 | 4.4:-3436242 | None:intergenic |
| ATAACTTGAATACTTCTCTC+AGG | 0.517509 | 4.4:-3436678 | None:intergenic |
| CAAGTTATTGTTGTAACTGA+CGG | 0.518216 | 4.4:+3436693 | MS.gene05873:CDS |
| ACTCGGAGATCTTGGATGCC+AGG | 0.520946 | 4.4:+3436731 | MS.gene05873:CDS |
| CGCCGTTGGTGGCGGTGTTG+AGG | 0.523116 | 4.4:+3435363 | MS.gene05873:CDS |
| AGCCCAAGATCCGCCGTTGG+TGG | 0.525009 | 4.4:+3435352 | MS.gene05873:CDS |
| CAACCGGAGTATATACAATT+GGG | 0.525343 | 4.4:-3436458 | None:intergenic |
| AACAATGCTTACATCTTCCC+AGG | 0.526563 | 4.4:+3439099 | MS.gene05873:CDS |
| GTAGCAGCCCTGAAGTTGAT+TGG | 0.526983 | 4.4:+3437853 | MS.gene05873:CDS |
| CACCGACTCACCATCTCTAA+AGG | 0.533747 | 4.4:-3435320 | None:intergenic |
| CCCTTGTTCACCTATAGTTG+CGG | 0.533999 | 4.4:-3439618 | None:intergenic |
| TTGGCTTTGTACTCCGCACT+AGG | 0.536425 | 4.4:+3437130 | MS.gene05873:CDS |
| ACATCGGCCTTAGACAAAAG+AGG | 0.536978 | 4.4:+3437350 | MS.gene05873:CDS |
| GGGATCCACAATACAACAAA+GGG | 0.538634 | 4.4:+3436016 | MS.gene05873:CDS |
| AAGTTGCTGGCTGCTGACAG+TGG | 0.539573 | 4.4:-3436094 | None:intergenic |
| TGCTCTTGAGATGTCAAAGC+AGG | 0.543056 | 4.4:+3438092 | MS.gene05873:CDS |
| ACTGCAGTGAAGCAAAACTA+TGG | 0.543060 | 4.4:+3437530 | MS.gene05873:CDS |
| AGTTGCTGGCTGCTGACAGT+GGG | 0.543658 | 4.4:-3436093 | None:intergenic |
| TGGAAAATGCTTACTGCTGA+AGG | 0.547591 | 4.4:-3437163 | None:intergenic |
| GTACACTCAGACTGTGAGGT+TGG | 0.547757 | 4.4:-3438783 | None:intergenic |
| AGAGGAATGTATGCTCTGGT+AGG | 0.549433 | 4.4:-3437882 | None:intergenic |
| GGTTCCTTTGCAAAAGTATG+TGG | 0.552500 | 4.4:+3436254 | MS.gene05873:CDS |
| CAACGGCGGATCTTGGGCTG+AGG | 0.555211 | 4.4:-3435348 | None:intergenic |
| TTTGATCCTGTTGAATACAA+AGG | 0.555630 | 4.4:+3438969 | MS.gene05873:CDS |
| GGTACCACCAATCAACTTCA+GGG | 0.557944 | 4.4:-3437860 | None:intergenic |
| ATATACTCCGGTTGTTGGTG+AGG | 0.559880 | 4.4:+3436467 | MS.gene05873:CDS |
| ACTTCTTATTGACAATGTTG+AGG | 0.559904 | 4.4:+3436428 | MS.gene05873:CDS |
| GCAAAAGTATGTGGCCATGA+TGG | 0.560034 | 4.4:+3436263 | MS.gene05873:CDS |
| AGCATATACAAGCGTCCTCA+GGG | 0.562435 | 4.4:+3436507 | MS.gene05873:CDS |
| GCAGTGGGTACTCTTTGCTG+AGG | 0.563558 | 4.4:+3435995 | MS.gene05873:intron |
| CTGTCTGTAATTCAGGGTAT+GGG | 0.565443 | 4.4:+3437091 | MS.gene05873:intron |
| ACAAAAGAGGGCAACTGGGA+AGG | 0.565641 | 4.4:+3437363 | MS.gene05873:CDS |
| AGGAAGAGGAATGTATGCTC+TGG | 0.571753 | 4.4:-3437886 | None:intergenic |
| ACACTTAAGTCCTTTAGAGA+TGG | 0.574219 | 4.4:+3435310 | MS.gene05873:CDS |
| GAGCATACATTCCTCTTCCT+CGG | 0.574422 | 4.4:+3437889 | MS.gene05873:CDS |
| CATTACCTGAAGGTCCATCA+TGG | 0.577825 | 4.4:-3436277 | None:intergenic |
| GATGATCCAATCAGAACTGT+AGG | 0.578735 | 4.4:-3438579 | None:intergenic |
| CACCTATAGTTGCGGTACAG+AGG | 0.578766 | 4.4:-3439610 | None:intergenic |
| ATCCTCAACACCGCCACCAA+CGG | 0.578871 | 4.4:-3435365 | None:intergenic |
| CAGGGTATGGGAATTCCTGT+TGG | 0.581626 | 4.4:+3437103 | MS.gene05873:intron |
| CATCGGCCTTAGACAAAAGA+GGG | 0.582094 | 4.4:+3437351 | MS.gene05873:CDS |
| TTGCTTTCACCGAGAAAGAG+AGG | 0.584418 | 4.4:+3436040 | MS.gene05873:CDS |
| CAGCTGAGGAGGCGTACACA+TGG | 0.586350 | 4.4:+3438805 | MS.gene05873:CDS |
| GATATGGCTTGTAGACTCAA+AGG | 0.587025 | 4.4:+3438255 | MS.gene05873:CDS |
| CTGATTGGATCATCAGGAGT+GGG | 0.587515 | 4.4:+3438588 | MS.gene05873:CDS |
| CTCAGCCCAAGATCCGCCGT+TGG | 0.587642 | 4.4:+3435349 | MS.gene05873:CDS |
| ATTTACAAAGGAAGTAGTTG+AGG | 0.588311 | 4.4:+3438617 | MS.gene05873:CDS |
| GGCTCGTGTTCATGAGCCCA+AGG | 0.588566 | 4.4:-3438432 | None:intergenic |
| CAGTCATGAACTCGTGCAGA+AGG | 0.588664 | 4.4:-3437511 | None:intergenic |
| CAGTGGGTACTCTTTGCTGA+GGG | 0.589331 | 4.4:+3435996 | MS.gene05873:intron |
| GTCTGAGTGTACAGCTGAGG+AGG | 0.593256 | 4.4:+3438794 | MS.gene05873:CDS |
| GCTCCCAATTGTATATACTC+CGG | 0.593816 | 4.4:+3436455 | MS.gene05873:CDS |
| CTCAACACCGCCACCAACGG+CGG | 0.593882 | 4.4:-3435362 | None:intergenic |
| CTATACCCAAACCAAAGCCT+GGG | 0.594858 | 4.4:-3439116 | None:intergenic |
| TGCTTTCACCGAGAAAGAGA+GGG | 0.595557 | 4.4:+3436041 | MS.gene05873:CDS |
| GAGGAATGTATGCTCTGGTA+GGG | 0.599160 | 4.4:-3437881 | None:intergenic |
| CTGGCAACAGAGAAGGTCCA+AGG | 0.599866 | 4.4:-3435430 | None:intergenic |
| TTGTTGTAACTGACGGTGAG+CGG | 0.607640 | 4.4:+3436700 | MS.gene05873:CDS |
| CGGTGAAGATTGTGCTACTG+AGG | 0.608903 | 4.4:+3435393 | MS.gene05873:CDS |
| GAAGCATATCATCATGTACT+CGG | 0.608942 | 4.4:-3439155 | None:intergenic |
| TGGCAACAGAGAAGGTCCAA+GGG | 0.610667 | 4.4:-3435429 | None:intergenic |
| GCTGCCAAGGCATATGAACT+AGG | 0.617490 | 4.4:+3439417 | MS.gene05873:CDS |
| TTACCAGTTACAATCGATGT+GGG | 0.618075 | 4.4:+3437292 | MS.gene05873:CDS |
| AGGGATGCACATTATTTGCG+TGG | 0.618100 | 4.4:+3436060 | MS.gene05873:CDS |
| TGCTGGCTGCTGACAGTGGG+AGG | 0.618141 | 4.4:-3436090 | None:intergenic |
| TAAGTACCTGGCAACAGAGA+AGG | 0.619492 | 4.4:-3435437 | None:intergenic |
| TTTACCAGTTACAATCGATG+TGG | 0.620404 | 4.4:+3437291 | MS.gene05873:CDS |
| TTGGAAAGAGCCAAAATGAG+AGG | 0.625032 | 4.4:-3438759 | None:intergenic |
| GGCGGTGTTGAGGATGTCTA+CGG | 0.627021 | 4.4:+3435373 | MS.gene05873:CDS |
| GTCCTTTAGAGATGGTGAGT+CGG | 0.628872 | 4.4:+3435318 | MS.gene05873:CDS |
| AGGGATCCACAATACAACAA+AGG | 0.634750 | 4.4:+3436015 | MS.gene05873:CDS |
| TTGACAAGATTCTCAGGACG+AGG | 0.639476 | 4.4:-3439562 | None:intergenic |
| TCTGATTGGATCATCAGGAG+TGG | 0.643145 | 4.4:+3438587 | MS.gene05873:CDS |
| GCTTTGTACTCCGCACTAGG+AGG | 0.644741 | 4.4:+3437133 | MS.gene05873:CDS |
| TTAGACAAAAGAGGGCAACT+GGG | 0.655554 | 4.4:+3437359 | MS.gene05873:CDS |
| AGGACGAACTCCTCCTAGTG+CGG | 0.656076 | 4.4:-3437143 | None:intergenic |
| ACAGTCTGAGTGTACAGCTG+AGG | 0.665419 | 4.4:+3438791 | MS.gene05873:CDS |
| GCAGCCCTGAAGTTGATTGG+TGG | 0.673097 | 4.4:+3437856 | MS.gene05873:CDS |
| AGCTGTACACTCAGACTGTG+AGG | 0.676280 | 4.4:-3438787 | None:intergenic |
| CTTGGCGAAGCAAGTGACCG+AGG | 0.678598 | 4.4:+3439317 | MS.gene05873:CDS |
| TTTCTGATATCAGAGAAAGG+TGG | 0.681242 | 4.4:-3439366 | None:intergenic |
| TACCAGTTACAATCGATGTG+GGG | 0.682781 | 4.4:+3437293 | MS.gene05873:CDS |
| GGAGGCGTACACATGGAGTG+AGG | 0.696804 | 4.4:+3438812 | MS.gene05873:CDS |
| TTCTTACTTCTCCAGCACCG+AGG | 0.699862 | 4.4:-3437906 | None:intergenic |
| CCTATAGTTGCGGTACAGAG+GGG | 0.701436 | 4.4:-3439608 | None:intergenic |
| GGCAACAGAGAAGGTCCAAG+GGG | 0.714351 | 4.4:-3435428 | None:intergenic |
| AAACTAATATATAGACCCTG+AGG | 0.747130 | 4.4:-3436522 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATGATTTTGAATAA+GGG | - | chr4.4:3437406-3437425 | None:intergenic | 10.0% |
| !!! | TAATAAAATGATTTTGAATA+AGG | - | chr4.4:3437407-3437426 | None:intergenic | 10.0% |
| !!! | TATTTTTCAAATTTTCAATT+TGG | + | chr4.4:3438327-3438346 | MS.gene05873:intron | 10.0% |
| !! | AAAATGGAAATATTAAACAA+AGG | - | chr4.4:3437256-3437275 | None:intergenic | 15.0% |
| !! | AATTATATACAAACTAATGT+AGG | - | chr4.4:3436573-3436592 | None:intergenic | 15.0% |
| !! | ATTTCAAATTTGAATTTATG+TGG | + | chr4.4:3437582-3437601 | MS.gene05873:intron | 15.0% |
| !! | TTTACTTGTATTTATTTATG+AGG | + | chr4.4:3437452-3437471 | MS.gene05873:intron | 15.0% |
| !!! | ATATGTTATTTATTTTCTAC+AGG | + | chr4.4:3436197-3436216 | MS.gene05873:intron | 15.0% |
| !!! | TACAGAATATTTTTTTATGA+TGG | + | chr4.4:3435568-3435587 | MS.gene05873:intron | 15.0% |
| !!! | TTTAATATTTCCATTTTTTC+TGG | + | chr4.4:3437259-3437278 | MS.gene05873:intron | 15.0% |
| !! | AAAAATTAAGAAATACATGC+CGG | - | chr4.4:3437764-3437783 | None:intergenic | 20.0% |
| !! | AACTAATTTATTCTCTTACA+GGG | + | chr4.4:3438363-3438382 | MS.gene05873:intron | 20.0% |
| !! | AGAATTAAAAACATGTCTAA+AGG | - | chr4.4:3438524-3438543 | None:intergenic | 20.0% |
| !! | GTCATATGAAATAAAAACAA+AGG | - | chr4.4:3435887-3435906 | None:intergenic | 20.0% |
| !! | TAAATACAAGTAAAATGATG+CGG | - | chr4.4:3437446-3437465 | None:intergenic | 20.0% |
| !! | TAACTAATTTATTCTCTTAC+AGG | + | chr4.4:3438362-3438381 | MS.gene05873:intron | 20.0% |
| !! | TAATATCATGGTGAATAATA+AGG | - | chr4.4:3437048-3437067 | None:intergenic | 20.0% |
| !! | TTCTCATATTAATAACTTAC+AGG | - | chr4.4:3439187-3439206 | None:intergenic | 20.0% |
| !!! | ATTAATTAATGCATTTTCTC+AGG | + | chr4.4:3437801-3437820 | MS.gene05873:intron | 20.0% |
| !!! | GAAAACATGATAAATTTTCA+TGG | + | chr4.4:3438283-3438302 | MS.gene05873:intron | 20.0% |
| !!! | TCATTTTTTGTTATGATTTC+AGG | + | chr4.4:3438044-3438063 | MS.gene05873:intron | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | - | chr4.4:3436787-3436806 | None:intergenic | 20.0% |
| !!! | TTAATTAATGCATTTTCTCA+GGG | + | chr4.4:3437802-3437821 | MS.gene05873:intron | 20.0% |
| ! | AAAGGCAAAACTTATTATTC+TGG | + | chr4.4:3438987-3439006 | MS.gene05873:CDS | 25.0% |
| ! | AAATATATCTCCATCATGTT+TGG | + | chr4.4:3438726-3438745 | MS.gene05873:intron | 25.0% |
| ! | AAGGAAATAATCAGATAGAA+TGG | - | chr4.4:3439066-3439085 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAATACATGTC+TGG | - | chr4.4:3439488-3439507 | None:intergenic | 25.0% |
| ! | ATATATTGAGAACCAAAGAA+AGG | - | chr4.4:3436181-3436200 | None:intergenic | 25.0% |
| ! | ATGAACGTTTAATGAATGTT+TGG | + | chr4.4:3435542-3435561 | MS.gene05873:intron | 25.0% |
| ! | CTCTGATATCAGAAAAATTT+CGG | + | chr4.4:3439374-3439393 | MS.gene05873:CDS | 25.0% |
| ! | CTTATCAAGTACAAATAAGA+AGG | - | chr4.4:3437945-3437964 | None:intergenic | 25.0% |
| ! | GAAATATTGTTGTCAAATAG+TGG | + | chr4.4:3435742-3435761 | MS.gene05873:intron | 25.0% |
| ! | GGAAAAAAAAATACATGTCT+GGG | - | chr4.4:3439487-3439506 | None:intergenic | 25.0% |
| ! | TAAACTAACAACATCAAATG+AGG | + | chr4.4:3436328-3436347 | MS.gene05873:intron | 25.0% |
| ! | TAACAAAAAATGAGTTAGAC+TGG | - | chr4.4:3438037-3438056 | None:intergenic | 25.0% |
| ! | TTTGAATTGCTTGCAAAATA+CGG | + | chr4.4:3437685-3437704 | MS.gene05873:CDS | 25.0% |
| !! | ATTAGTTTGAAAGAGAAGTA+TGG | + | chr4.4:3436537-3436556 | MS.gene05873:intron | 25.0% |
| !! | ATTTTTCTGATATCAGAGAA+AGG | - | chr4.4:3439372-3439391 | None:intergenic | 25.0% |
| !! | GATTATCTGAAATTGTAAGA+TGG | - | chr4.4:3438556-3438575 | None:intergenic | 25.0% |
| !! | TAATTAATGCATTTTCTCAG+GGG | + | chr4.4:3437803-3437822 | MS.gene05873:intron | 25.0% |
| !! | TTTATGAGGCTACATTTTAT+TGG | + | chr4.4:3437466-3437485 | MS.gene05873:intron | 25.0% |
| !!! | AATATTTCCATTTTTTCTGG+TGG | + | chr4.4:3437262-3437281 | MS.gene05873:intron | 25.0% |
| !!! | CATTTTATTGGTTTCTTCTT+AGG | + | chr4.4:3437478-3437497 | MS.gene05873:intron | 25.0% |
| !!! | GCAGTTTTGTTTAGTTTAAA+AGG | - | chr4.4:3439508-3439527 | None:intergenic | 25.0% |
| !!! | TTCTTGAGGTTTTAAAAAAC+TGG | + | chr4.4:3436655-3436674 | MS.gene05873:CDS | 25.0% |
| AAACTAATATATAGACCCTG+AGG | - | chr4.4:3436525-3436544 | None:intergenic | 30.0% | |
| AAAGAAGACCAATACTTAAC+CGG | - | chr4.4:3438872-3438891 | None:intergenic | 30.0% | |
| ACTTCTTATTGACAATGTTG+AGG | + | chr4.4:3436428-3436447 | MS.gene05873:CDS | 30.0% | |
| AGTGGGAAAAACATTTACAA+AGG | + | chr4.4:3438605-3438624 | MS.gene05873:CDS | 30.0% | |
| ATAAATACTCGTTATGAGAG+CGG | - | chr4.4:3438680-3438699 | None:intergenic | 30.0% | |
| ATAACTTGAATACTTCTCTC+AGG | - | chr4.4:3436681-3436700 | None:intergenic | 30.0% | |
| ATGGTGAATAATAAGGTCTT+AGG | - | chr4.4:3437041-3437060 | None:intergenic | 30.0% | |
| ATTCCATAAACTCTCTCAAA+CGG | + | chr4.4:3435639-3435658 | MS.gene05873:intron | 30.0% | |
| ATTTACAAAGGAAGTAGTTG+AGG | + | chr4.4:3438617-3438636 | MS.gene05873:CDS | 30.0% | |
| CAAGTTATTGTTGTAACTGA+CGG | + | chr4.4:3436693-3436712 | MS.gene05873:CDS | 30.0% | |
| CTAGTGTTAGCATAATATCA+TGG | - | chr4.4:3437060-3437079 | None:intergenic | 30.0% | |
| CTGAAATTGTAAGATGGTTA+TGG | - | chr4.4:3438550-3438569 | None:intergenic | 30.0% | |
| GTATTATGTCTTACACATAC+CGG | + | chr4.4:3437742-3437761 | MS.gene05873:intron | 30.0% | |
| GTTTATACAAACAAGGCTTT+AGG | - | chr4.4:3436780-3436799 | None:intergenic | 30.0% | |
| TGGTGAATAATAAGGTCTTA+GGG | - | chr4.4:3437040-3437059 | None:intergenic | 30.0% | |
| TGTTTATATACCAGTAACAC+TGG | + | chr4.4:3438131-3438150 | MS.gene05873:intron | 30.0% | |
| TTGTACTACATAGTGTATCA+CGG | - | chr4.4:3435717-3435736 | None:intergenic | 30.0% | |
| TTGTATTCAACAGGATCAAA+TGG | - | chr4.4:3438969-3438988 | None:intergenic | 30.0% | |
| TTTGATCCTGTTGAATACAA+AGG | + | chr4.4:3438969-3438988 | MS.gene05873:CDS | 30.0% | |
| ! | AAAAACAAAGGTGCAATCAA+TGG | - | chr4.4:3435875-3435894 | None:intergenic | 30.0% |
| ! | CTGAATGATGAGTTTTACAT+CGG | + | chr4.4:3437334-3437353 | MS.gene05873:CDS | 30.0% |
| ! | TGTTTTCAACGATGATATAC+AGG | + | chr4.4:3437720-3437739 | MS.gene05873:CDS | 30.0% |
| ! | TTAATGAAAGTGTGATGAGT+TGG | - | chr4.4:3436311-3436330 | None:intergenic | 30.0% |
| !! | TCATAGATTGACTTGATTTG+TGG | - | chr4.4:3436146-3436165 | None:intergenic | 30.0% |
| !! | TTTTTGTTATGATTTCAGGC+AGG | + | chr4.4:3438048-3438067 | MS.gene05873:intron | 30.0% |
| !!! | AGATGTTGTTTTCCTTTCTT+TGG | + | chr4.4:3436166-3436185 | MS.gene05873:intron | 30.0% |
| !!! | GTGAAGAAAATTTTAGAACC+TGG | - | chr4.4:3439013-3439032 | None:intergenic | 30.0% |
| AAACTATAACCTGAAGTTGC+TGG | - | chr4.4:3436110-3436129 | None:intergenic | 35.0% | |
| AACTATGCTGTCTGTAATTC+AGG | + | chr4.4:3437084-3437103 | MS.gene05873:intron | 35.0% | |
| AAGAAGACCAATACTTAACC+GGG | - | chr4.4:3438871-3438890 | None:intergenic | 35.0% | |
| AAGAGAGTCGTAAGAAGATA+TGG | + | chr4.4:3438239-3438258 | MS.gene05873:CDS | 35.0% | |
| ACAAAAGAAACCAGTGTTAC+TGG | - | chr4.4:3438144-3438163 | None:intergenic | 35.0% | |
| ACAACCGGAGTATATACAAT+TGG | - | chr4.4:3436462-3436481 | None:intergenic | 35.0% | |
| ACTATGCTGTCTGTAATTCA+GGG | + | chr4.4:3437085-3437104 | MS.gene05873:intron | 35.0% | |
| ATAAGGTCTTAGGGTCTATT+TGG | - | chr4.4:3437031-3437050 | None:intergenic | 35.0% | |
| ATTGTATATACTCCGGTTGT+TGG | + | chr4.4:3436462-3436481 | MS.gene05873:CDS | 35.0% | |
| CAAAACTTATTATTCTGGCC+AGG | + | chr4.4:3438992-3439011 | MS.gene05873:CDS | 35.0% | |
| CAACCGGAGTATATACAATT+GGG | - | chr4.4:3436461-3436480 | None:intergenic | 35.0% | |
| GAAGCATATCATCATGTACT+CGG | - | chr4.4:3439158-3439177 | None:intergenic | 35.0% | |
| GAATGAGAAGAGACAATAGA+TGG | - | chr4.4:3437186-3437205 | None:intergenic | 35.0% | |
| TAAATACTCGTTATGAGAGC+GGG | - | chr4.4:3438679-3438698 | None:intergenic | 35.0% | |
| TACAAAGCCAATTTACCAAC+AGG | - | chr4.4:3437121-3437140 | None:intergenic | 35.0% | |
| TCATAAGATGTCAAGTCAAG+CGG | + | chr4.4:3435664-3435683 | MS.gene05873:intron | 35.0% | |
| TGATTCAGTGTTGTCAACTA+CGG | - | chr4.4:3435811-3435830 | None:intergenic | 35.0% | |
| TGGTGAAAAAGTTCTTGTAC+AGG | + | chr4.4:3437550-3437569 | MS.gene05873:CDS | 35.0% | |
| TTACCAGTTACAATCGATGT+GGG | + | chr4.4:3437292-3437311 | MS.gene05873:CDS | 35.0% | |
| TTCTTACGACTCTCTTCTAT+AGG | - | chr4.4:3438235-3438254 | None:intergenic | 35.0% | |
| TTGATACCTTAACAGCATCT+AGG | - | chr4.4:3438470-3438489 | None:intergenic | 35.0% | |
| TTTACCAGTTACAATCGATG+TGG | + | chr4.4:3437291-3437310 | MS.gene05873:CDS | 35.0% | |
| TTTCTGATATCAGAGAAAGG+TGG | - | chr4.4:3439369-3439388 | None:intergenic | 35.0% | |
| TTTGCAAAGGAACCTCATAT+TGG | - | chr4.4:3436248-3436267 | None:intergenic | 35.0% | |
| ! | AAGAATTTTTCCCCTGCAAA+AGG | - | chr4.4:3436640-3436659 | None:intergenic | 35.0% |
| ! | ACACTTAAGTCCTTTAGAGA+TGG | + | chr4.4:3435310-3435329 | MS.gene05873:CDS | 35.0% |
| ! | ATAGTCTTACTTCATCTGCA+TGG | - | chr4.4:3437993-3438012 | None:intergenic | 35.0% |
| ! | GATTCTCCTTTAGAAATACC+TGG | - | chr4.4:3436752-3436771 | None:intergenic | 35.0% |
| ! | GTTTTGCCTTTGTATTCAAC+AGG | - | chr4.4:3438978-3438997 | None:intergenic | 35.0% |
| !! | AGCTTTTGTTTACCTTTTGC+AGG | + | chr4.4:3436625-3436644 | MS.gene05873:intron | 35.0% |
| !! | ATTGTTTCTGTTGCAGACTA+AGG | + | chr4.4:3438207-3438226 | MS.gene05873:intron | 35.0% |
| !! | CTTTTGTTTACCTTTTGCAG+GGG | + | chr4.4:3436627-3436646 | MS.gene05873:intron | 35.0% |
| !! | GCTTTTGTTTACCTTTTGCA+GGG | + | chr4.4:3436626-3436645 | MS.gene05873:intron | 35.0% |
| AACAATGCTTACATCTTCCC+AGG | + | chr4.4:3439099-3439118 | MS.gene05873:CDS | 40.0% | |
| AACACTGAATCAATCCAGAC+AGG | + | chr4.4:3435819-3435838 | MS.gene05873:intron | 40.0% | |
| AACCTATTGCGAGTCATGAA+GGG | - | chr4.4:3438500-3438519 | None:intergenic | 40.0% | |
| ACACTAGCCACCAGAAAAAA+TGG | - | chr4.4:3437272-3437291 | None:intergenic | 40.0% | |
| ACCGAGGAGAACTACAAAAA+GGG | + | chr4.4:3439333-3439352 | MS.gene05873:CDS | 40.0% | |
| ACTGCAGTGAAGCAAAACTA+TGG | + | chr4.4:3437530-3437549 | MS.gene05873:CDS | 40.0% | |
| ACTGCTTCAACTCTCATTGT+AGG | + | chr4.4:3439523-3439542 | MS.gene05873:intron | 40.0% | |
| AGACCGTTTGAGAGAGTTTA+TGG | - | chr4.4:3435645-3435664 | None:intergenic | 40.0% | |
| AGCAACATTTGCAGCTATGT+TGG | - | chr4.4:3439400-3439419 | None:intergenic | 40.0% | |
| AGGGATCCACAATACAACAA+AGG | + | chr4.4:3436015-3436034 | MS.gene05873:CDS | 40.0% | |
| AGTCTCAGTAGTGTGTATGT+CGG | + | chr4.4:3436982-3437001 | MS.gene05873:intron | 40.0% | |
| ATGCATGTGATGTAAGTACC+TGG | - | chr4.4:3435452-3435471 | None:intergenic | 40.0% | |
| ATTTGCCCGTTTCCGAAAAA+AGG | + | chr4.4:3438917-3438936 | MS.gene05873:intron | 40.0% | |
| CTACGGATCACGGAAATTAA+TGG | - | chr4.4:3435794-3435813 | None:intergenic | 40.0% | |
| CTAGAACAGACTAAGCTCTA+AGG | - | chr4.4:3435846-3435865 | None:intergenic | 40.0% | |
| CTGTCTGTAATTCAGGGTAT+GGG | + | chr4.4:3437091-3437110 | MS.gene05873:intron | 40.0% | |
| GATGATCCAATCAGAACTGT+AGG | - | chr4.4:3438582-3438601 | None:intergenic | 40.0% | |
| GCATACTTGACAAGATTCTC+AGG | - | chr4.4:3439571-3439590 | None:intergenic | 40.0% | |
| GCTCCCAATTGTATATACTC+CGG | + | chr4.4:3436455-3436474 | MS.gene05873:CDS | 40.0% | |
| GGGATCCACAATACAACAAA+GGG | + | chr4.4:3436016-3436035 | MS.gene05873:CDS | 40.0% | |
| TACACACTACTGAGACTGTT+TGG | - | chr4.4:3436979-3436998 | None:intergenic | 40.0% | |
| TACCAGTTACAATCGATGTG+GGG | + | chr4.4:3437293-3437312 | MS.gene05873:CDS | 40.0% | |
| TCAACACTTCAAGAAGCCTT+GGG | + | chr4.4:3438416-3438435 | MS.gene05873:CDS | 40.0% | |
| TCAAGTACGACATTCATTGC+AGG | + | chr4.4:3436593-3436612 | MS.gene05873:intron | 40.0% | |
| TGGAAAATGCTTACTGCTGA+AGG | - | chr4.4:3437166-3437185 | None:intergenic | 40.0% | |
| TGTATATGCTCCCGTATTTC+TGG | - | chr4.4:3436497-3436516 | None:intergenic | 40.0% | |
| TTAGACAAAAGAGGGCAACT+GGG | + | chr4.4:3437359-3437378 | MS.gene05873:CDS | 40.0% | |
| TTATGATTTCAGGCAGGAAC+TGG | + | chr4.4:3438054-3438073 | MS.gene05873:intron | 40.0% | |
| TTCAACACTTCAAGAAGCCT+TGG | + | chr4.4:3438415-3438434 | MS.gene05873:CDS | 40.0% | |
| TTCAACTCTCATTGTAGGCT+TGG | + | chr4.4:3439528-3439547 | MS.gene05873:intron | 40.0% | |
| TTGCAGGGGAAAAATTCTTG+AGG | + | chr4.4:3436641-3436660 | MS.gene05873:intron | 40.0% | |
| TTGGAAAGAGCCAAAATGAG+AGG | - | chr4.4:3438762-3438781 | None:intergenic | 40.0% | |
| TTTGCCCGTTTCCGAAAAAA+GGG | + | chr4.4:3438918-3438937 | MS.gene05873:intron | 40.0% | |
| ! | ACAGTTCTGATTGGATCATC+AGG | + | chr4.4:3438582-3438601 | MS.gene05873:CDS | 40.0% |
| ! | ATCAAGCCTACAGTTCTGAT+TGG | + | chr4.4:3438573-3438592 | MS.gene05873:CDS | 40.0% |
| ! | ATGGCCACATACTTTTGCAA+AGG | - | chr4.4:3436261-3436280 | None:intergenic | 40.0% |
| ! | ATGTTGTTGTTGTCGTCAAC+AGG | + | chr4.4:3436380-3436399 | MS.gene05873:intron | 40.0% |
| ! | ATTGTTGGACTGCATTGACA+AGG | - | chr4.4:3439085-3439104 | None:intergenic | 40.0% |
| ! | GAGTTAGACTGGCTAATGTA+GGG | - | chr4.4:3438026-3438045 | None:intergenic | 40.0% |
| ! | GATATGGCTTGTAGACTCAA+AGG | + | chr4.4:3438255-3438274 | MS.gene05873:CDS | 40.0% |
| ! | GGCTCTTGAACCTATTTTCT+CGG | + | chr4.4:3437603-3437622 | MS.gene05873:intron | 40.0% |
| ! | GGGAATTCCTGTTGGTAAAT+TGG | + | chr4.4:3437111-3437130 | MS.gene05873:CDS | 40.0% |
| ! | GGTTCCTTTGCAAAAGTATG+TGG | + | chr4.4:3436254-3436273 | MS.gene05873:CDS | 40.0% |
| ! | TGAGTTAGACTGGCTAATGT+AGG | - | chr4.4:3438027-3438046 | None:intergenic | 40.0% |
| ! | TGGATGCCAGGTATTTCTAA+AGG | + | chr4.4:3436743-3436762 | MS.gene05873:intron | 40.0% |
| ! | TGGGAAGATGTAAGCATTGT+TGG | - | chr4.4:3439100-3439119 | None:intergenic | 40.0% |
| ! | TGGTTTGGGTATAGTGATGT+CGG | + | chr4.4:3439125-3439144 | MS.gene05873:CDS | 40.0% |
| !!! | AAATCGCACGACCCTTTTTT+CGG | - | chr4.4:3438932-3438951 | None:intergenic | 40.0% |
| AAGTCAAGCGGAAGCTATAG+CGG | + | chr4.4:3435676-3435695 | MS.gene05873:intron | 45.0% | |
| AATCTGCAGGCCAAACATGA+TGG | - | chr4.4:3438739-3438758 | None:intergenic | 45.0% | |
| ACATCGGCCTTAGACAAAAG+AGG | + | chr4.4:3437350-3437369 | MS.gene05873:CDS | 45.0% | |
| ACCTATAGTTGCGGTACAGA+GGG | - | chr4.4:3439612-3439631 | None:intergenic | 45.0% | |
| ACTATACCCAAACCAAAGCC+TGG | - | chr4.4:3439120-3439139 | None:intergenic | 45.0% | |
| AGAGGAATGTATGCTCTGGT+AGG | - | chr4.4:3437885-3437904 | None:intergenic | 45.0% | |
| AGCATATACAAGCGTCCTCA+GGG | + | chr4.4:3436507-3436526 | MS.gene05873:CDS | 45.0% | |
| AGGAAGAGGAATGTATGCTC+TGG | - | chr4.4:3437889-3437908 | None:intergenic | 45.0% | |
| AGGGATGCACATTATTTGCG+TGG | + | chr4.4:3436060-3436079 | MS.gene05873:CDS | 45.0% | |
| ATATACTCCGGTTGTTGGTG+AGG | + | chr4.4:3436467-3436486 | MS.gene05873:CDS | 45.0% | |
| ATGTGCATCCCTCTCTTTCT+CGG | - | chr4.4:3436052-3436071 | None:intergenic | 45.0% | |
| CAACCTATTGCGAGTCATGA+AGG | - | chr4.4:3438501-3438520 | None:intergenic | 45.0% | |
| CAATCAGACGCCGAGAAAAT+AGG | - | chr4.4:3437616-3437635 | None:intergenic | 45.0% | |
| CACACCTAGTTCATATGCCT+TGG | - | chr4.4:3439424-3439443 | None:intergenic | 45.0% | |
| CACACTCCTAGATGCTGTTA+AGG | + | chr4.4:3438461-3438480 | MS.gene05873:CDS | 45.0% | |
| CATCGGCCTTAGACAAAAGA+GGG | + | chr4.4:3437351-3437370 | MS.gene05873:CDS | 45.0% | |
| CATTACCTGAAGGTCCATCA+TGG | - | chr4.4:3436280-3436299 | None:intergenic | 45.0% | |
| CCAAAATGAGAGGAATCTGC+AGG | - | chr4.4:3438752-3438771 | None:intergenic | 45.0% | |
| CTATACCCAAACCAAAGCCT+GGG | - | chr4.4:3439119-3439138 | None:intergenic | 45.0% | |
| CTGATTGGATCATCAGGAGT+GGG | + | chr4.4:3438588-3438607 | MS.gene05873:CDS | 45.0% | |
| CTGTAGACCCGGTTAAGTAT+TGG | + | chr4.4:3438861-3438880 | MS.gene05873:intron | 45.0% | |
| CTTAGACAAAAGAGGGCAAC+TGG | + | chr4.4:3437358-3437377 | MS.gene05873:CDS | 45.0% | |
| GACCGAGGAGAACTACAAAA+AGG | + | chr4.4:3439332-3439351 | MS.gene05873:CDS | 45.0% | |
| GAGCATACATTCCTCTTCCT+CGG | + | chr4.4:3437889-3437908 | MS.gene05873:CDS | 45.0% | |
| GAGGAATGTATGCTCTGGTA+GGG | - | chr4.4:3437884-3437903 | None:intergenic | 45.0% | |
| GCAAAGGAACCTCATATTGG+CGG | - | chr4.4:3436245-3436264 | None:intergenic | 45.0% | |
| GCTGTCTGTAATTCAGGGTA+TGG | + | chr4.4:3437090-3437109 | MS.gene05873:intron | 45.0% | |
| GGAATGCATGCATTACCTGA+AGG | - | chr4.4:3436290-3436309 | None:intergenic | 45.0% | |
| GGTACCACCAATCAACTTCA+GGG | - | chr4.4:3437863-3437882 | None:intergenic | 45.0% | |
| GGTTTGGGTATAGTGATGTC+GGG | + | chr4.4:3439126-3439145 | MS.gene05873:CDS | 45.0% | |
| GTAACTGTCTACACTGCAGT+GGG | + | chr4.4:3435980-3435999 | MS.gene05873:intron | 45.0% | |
| GTGTTGTCAACTACGGATCA+CGG | - | chr4.4:3435804-3435823 | None:intergenic | 45.0% | |
| TAAGTACCTGGCAACAGAGA+AGG | - | chr4.4:3435440-3435459 | None:intergenic | 45.0% | |
| TCTGATTGGATCATCAGGAG+TGG | + | chr4.4:3438587-3438606 | MS.gene05873:CDS | 45.0% | |
| TGCTCTTGAGATGTCAAAGC+AGG | + | chr4.4:3438092-3438111 | MS.gene05873:CDS | 45.0% | |
| TGCTTTCACCGAGAAAGAGA+GGG | + | chr4.4:3436041-3436060 | MS.gene05873:CDS | 45.0% | |
| TGTAACTGTCTACACTGCAG+TGG | + | chr4.4:3435979-3435998 | MS.gene05873:intron | 45.0% | |
| TGTACCGCAACTATAGGTGA+TGG | + | chr4.4:3439614-3439633 | MS.gene05873:CDS | 45.0% | |
| TTGACAAGATTCTCAGGACG+AGG | - | chr4.4:3439565-3439584 | None:intergenic | 45.0% | |
| TTGCTTTCACCGAGAAAGAG+AGG | + | chr4.4:3436040-3436059 | MS.gene05873:CDS | 45.0% | |
| TTGTTGTAACTGACGGTGAG+CGG | + | chr4.4:3436700-3436719 | MS.gene05873:CDS | 45.0% | |
| ! | ATCTTCCCAGGCTTTGGTTT+GGG | + | chr4.4:3439111-3439130 | MS.gene05873:CDS | 45.0% |
| ! | ATGGCTTGTAGACTCAAAGG+TGG | + | chr4.4:3438258-3438277 | MS.gene05873:intron | 45.0% |
| ! | CAGTTGCCCTCTTTTGTCTA+AGG | - | chr4.4:3437360-3437379 | None:intergenic | 45.0% |
| ! | CCTGCAGATTCCTCTCATTT+TGG | + | chr4.4:3438749-3438768 | MS.gene05873:intron | 45.0% |
| ! | GCAAAAGTATGTGGCCATGA+TGG | + | chr4.4:3436263-3436282 | MS.gene05873:CDS | 45.0% |
| ! | GCAAGCCCTTTGTTGTATTG+TGG | - | chr4.4:3436024-3436043 | None:intergenic | 45.0% |
| ! | GCCCTTTTTGTAGTTCTCCT+CGG | - | chr4.4:3439337-3439356 | None:intergenic | 45.0% |
| ! | GTCCTTTAGAGATGGTGAGT+CGG | + | chr4.4:3435318-3435337 | MS.gene05873:CDS | 45.0% |
| !!! | ACGACCCTTTTTTCGGAAAC+GGG | - | chr4.4:3438925-3438944 | None:intergenic | 45.0% |
| !!! | ATTTTGGGACTCGGAGATCT+TGG | + | chr4.4:3436723-3436742 | MS.gene05873:CDS | 45.0% |
| !!! | CACGACCCTTTTTTCGGAAA+CGG | - | chr4.4:3438926-3438945 | None:intergenic | 45.0% |
| ACAAAAGAGGGCAACTGGGA+AGG | + | chr4.4:3437363-3437382 | MS.gene05873:CDS | 50.0% | |
| ACAGTCTGAGTGTACAGCTG+AGG | + | chr4.4:3438791-3438810 | MS.gene05873:CDS | 50.0% | |
| ACTGCAGCTGTTGTTCTAGC+TGG | + | chr4.4:3437826-3437845 | MS.gene05873:CDS | 50.0% | |
| AGAACAGAGAAGCGACAGAG+AGG | - | chr4.4:3435947-3435966 | None:intergenic | 50.0% | |
| AGCTGCAAATGTTGCTGCCA+AGG | + | chr4.4:3439404-3439423 | MS.gene05873:CDS | 50.0% | |
| AGCTGTACACTCAGACTGTG+AGG | - | chr4.4:3438790-3438809 | None:intergenic | 50.0% | |
| AGGATCAACTTGTCACCCCT+TGG | + | chr4.4:3435413-3435432 | MS.gene05873:CDS | 50.0% | |
| CACCTATAGTTGCGGTACAG+AGG | - | chr4.4:3439613-3439632 | None:intergenic | 50.0% | |
| CAGGGTATGGGAATTCCTGT+TGG | + | chr4.4:3437103-3437122 | MS.gene05873:intron | 50.0% | |
| CAGTCATGAACTCGTGCAGA+AGG | - | chr4.4:3437514-3437533 | None:intergenic | 50.0% | |
| CAGTGGGTACTCTTTGCTGA+GGG | + | chr4.4:3435996-3436015 | MS.gene05873:intron | 50.0% | |
| CCGGGTCTACAGAAAAGATG+CGG | - | chr4.4:3438853-3438872 | None:intergenic | 50.0% | |
| CCTATAGTTGCGGTACAGAG+GGG | - | chr4.4:3439611-3439630 | None:intergenic | 50.0% | |
| CTCAGACTGTGAGGTTGGAT+TGG | - | chr4.4:3438781-3438800 | None:intergenic | 50.0% | |
| GAGCATATACAAGCGTCCTC+AGG | + | chr4.4:3436506-3436525 | MS.gene05873:CDS | 50.0% | |
| GCACAACATCCGCCAATATG+AGG | + | chr4.4:3436233-3436252 | MS.gene05873:CDS | 50.0% | |
| GCTGCCAAGGCATATGAACT+AGG | + | chr4.4:3439417-3439436 | MS.gene05873:CDS | 50.0% | |
| GCTTACATCTTCCCAGGCTT+TGG | + | chr4.4:3439105-3439124 | MS.gene05873:CDS | 50.0% | |
| GCTTGTAGACTCAAAGGTGG+TGG | + | chr4.4:3438261-3438280 | MS.gene05873:intron | 50.0% | |
| GGGTACCACCAATCAACTTC+AGG | - | chr4.4:3437864-3437883 | None:intergenic | 50.0% | |
| GGTGAGGCTTGCCAGAAATA+CGG | + | chr4.4:3436483-3436502 | MS.gene05873:CDS | 50.0% | |
| GTACACTCAGACTGTGAGGT+TGG | - | chr4.4:3438786-3438805 | None:intergenic | 50.0% | |
| GTCCCTTCATGACTCGCAAT+AGG | + | chr4.4:3438495-3438514 | MS.gene05873:intron | 50.0% | |
| GTGAGGCTTGCCAGAAATAC+GGG | + | chr4.4:3436484-3436503 | MS.gene05873:CDS | 50.0% | |
| GTTGTTGTCGTCAACAGGAG+AGG | + | chr4.4:3436385-3436404 | MS.gene05873:intron | 50.0% | |
| TGGCAACAGAGAAGGTCCAA+GGG | - | chr4.4:3435432-3435451 | None:intergenic | 50.0% | |
| TTCTTACTTCTCCAGCACCG+AGG | - | chr4.4:3437909-3437928 | None:intergenic | 50.0% | |
| ! | CATCTTCCCAGGCTTTGGTT+TGG | + | chr4.4:3439110-3439129 | MS.gene05873:CDS | 50.0% |
| ! | CCGCATCTTTTCTGTAGACC+CGG | + | chr4.4:3438850-3438869 | MS.gene05873:intron | 50.0% |
| ! | CGGTGAAGATTGTGCTACTG+AGG | + | chr4.4:3435393-3435412 | MS.gene05873:CDS | 50.0% |
| ! | GCATCTAGGAGTGTGCTAAC+AGG | - | chr4.4:3438456-3438475 | None:intergenic | 50.0% |
| ! | GTAGCAGCCCTGAAGTTGAT+TGG | + | chr4.4:3437853-3437872 | MS.gene05873:CDS | 50.0% |
| ! | GTCCCCACATCGATTGTAAC+TGG | - | chr4.4:3437298-3437317 | None:intergenic | 50.0% |
| ! | GTCGTGCGATTTTCGCTAGT+GGG | + | chr4.4:3438940-3438959 | MS.gene05873:CDS | 50.0% |
| !! | AACTGACGGTGAGCGGATTT+TGG | + | chr4.4:3436707-3436726 | MS.gene05873:CDS | 50.0% |
| !! | ACTGACGGTGAGCGGATTTT+GGG | + | chr4.4:3436708-3436727 | MS.gene05873:CDS | 50.0% |
| !! | CACCGACTCACCATCTCTAA+AGG | - | chr4.4:3435323-3435342 | None:intergenic | 50.0% |
| !! | CTAAGCTCTAAGGACCTGTC+TGG | - | chr4.4:3435836-3435855 | None:intergenic | 50.0% |
| !! | TTGGCTTTGTACTCCGCACT+AGG | + | chr4.4:3437130-3437149 | MS.gene05873:CDS | 50.0% |
| ACTCGGAGATCTTGGATGCC+AGG | + | chr4.4:3436731-3436750 | MS.gene05873:CDS | 55.0% | |
| AGGACGAACTCCTCCTAGTG+CGG | - | chr4.4:3437146-3437165 | None:intergenic | 55.0% | |
| ATCCTCAACACCGCCACCAA+CGG | - | chr4.4:3435368-3435387 | None:intergenic | 55.0% | |
| CCCCTCTGTACCGCAACTAT+AGG | + | chr4.4:3439608-3439627 | MS.gene05873:CDS | 55.0% | |
| CTGGCAACAGAGAAGGTCCA+AGG | - | chr4.4:3435433-3435452 | None:intergenic | 55.0% | |
| CTTGGACCTTCTCTGTTGCC+AGG | + | chr4.4:3435431-3435450 | MS.gene05873:CDS | 55.0% | |
| GCAGTGGGTACTCTTTGCTG+AGG | + | chr4.4:3435995-3436014 | MS.gene05873:intron | 55.0% | |
| GCTTTGTACTCCGCACTAGG+AGG | + | chr4.4:3437133-3437152 | MS.gene05873:CDS | 55.0% | |
| GGCAACAGAGAAGGTCCAAG+GGG | - | chr4.4:3435431-3435450 | None:intergenic | 55.0% | |
| GTCTGAGTGTACAGCTGAGG+AGG | + | chr4.4:3438794-3438813 | MS.gene05873:CDS | 55.0% | |
| TAGAGATGGTGAGTCGGTGC+TGG | + | chr4.4:3435324-3435343 | MS.gene05873:CDS | 55.0% | |
| TGCTGACAGTGGGAGGTAAG+AGG | - | chr4.4:3436086-3436105 | None:intergenic | 55.0% | |
| TGGCAAGCCTCACCAACAAC+CGG | - | chr4.4:3436477-3436496 | None:intergenic | 55.0% | |
| TGTCAGCAGCCAGCAACTTC+AGG | + | chr4.4:3436098-3436117 | MS.gene05873:CDS | 55.0% | |
| ! | AAGTTGCTGGCTGCTGACAG+TGG | - | chr4.4:3436097-3436116 | None:intergenic | 55.0% |
| ! | ACATTCCTCTTCCTCGGTGC+TGG | + | chr4.4:3437895-3437914 | MS.gene05873:CDS | 55.0% |
| ! | AGTTGCTGGCTGCTGACAGT+GGG | - | chr4.4:3436096-3436115 | None:intergenic | 55.0% |
| ! | GCAGCCCTGAAGTTGATTGG+TGG | + | chr4.4:3437856-3437875 | MS.gene05873:CDS | 55.0% |
| ! | GGCGGTGTTGAGGATGTCTA+CGG | + | chr4.4:3435373-3435392 | MS.gene05873:CDS | 55.0% |
| ! | GGTCGTGCGATTTTCGCTAG+TGG | + | chr4.4:3438939-3438958 | MS.gene05873:CDS | 55.0% |
| !! | TGTGGCCATGATGGACCTTC+AGG | + | chr4.4:3436272-3436291 | MS.gene05873:CDS | 55.0% |
| !!! | GGTGAGCGGATTTTGGGACT+CGG | + | chr4.4:3436714-3436733 | MS.gene05873:CDS | 55.0% |
| CTCGGTCACTTGCTTCGCCA+AGG | - | chr4.4:3439319-3439338 | None:intergenic | 60.0% | |
| CTTGGCGAAGCAAGTGACCG+AGG | + | chr4.4:3439317-3439336 | MS.gene05873:CDS | 60.0% | |
| GGCTCGTGTTCATGAGCCCA+AGG | - | chr4.4:3438435-3438454 | None:intergenic | 60.0% | |
| ! | CAGCTGAGGAGGCGTACACA+TGG | + | chr4.4:3438805-3438824 | MS.gene05873:CDS | 60.0% |
| ! | CTTCTCCAGCACCGAGGAAG+AGG | - | chr4.4:3437903-3437922 | None:intergenic | 60.0% |
| ! | GGAGGCGTACACATGGAGTG+AGG | + | chr4.4:3438812-3438831 | MS.gene05873:CDS | 60.0% |
| AGCCCAAGATCCGCCGTTGG+TGG | + | chr4.4:3435352-3435371 | MS.gene05873:CDS | 65.0% | |
| CAACGGCGGATCTTGGGCTG+AGG | - | chr4.4:3435351-3435370 | None:intergenic | 65.0% | |
| CGCCACCAACGGCGGATCTT+GGG | - | chr4.4:3435357-3435376 | None:intergenic | 65.0% | |
| CTCAACACCGCCACCAACGG+CGG | - | chr4.4:3435365-3435384 | None:intergenic | 65.0% | |
| CTCAGCCCAAGATCCGCCGT+TGG | + | chr4.4:3435349-3435368 | MS.gene05873:CDS | 65.0% | |
| ! | CCAAGATCCGCCGTTGGTGG+CGG | + | chr4.4:3435355-3435374 | MS.gene05873:CDS | 65.0% |
| ! | TGCTGGCTGCTGACAGTGGG+AGG | - | chr4.4:3436093-3436112 | None:intergenic | 65.0% |
| CCGCCACCAACGGCGGATCT+TGG | - | chr4.4:3435358-3435377 | None:intergenic | 70.0% | |
| !! | CGCCGTTGGTGGCGGTGTTG+AGG | + | chr4.4:3435363-3435382 | MS.gene05873:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3435301 | 3439633 | 3435301 | ID=MS.gene05873 |
| chr4.4 | mRNA | 3435301 | 3439633 | 3435301 | ID=MS.gene05873.t1;Parent=MS.gene05873 |
| chr4.4 | exon | 3435301 | 3435452 | 3435301 | ID=MS.gene05873.t1.exon1;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3435301 | 3435452 | 3435301 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3435999 | 3436119 | 3435999 | ID=MS.gene05873.t1.exon2;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3435999 | 3436119 | 3435999 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3436219 | 3436293 | 3436219 | ID=MS.gene05873.t1.exon3;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3436219 | 3436293 | 3436219 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3436402 | 3436553 | 3436402 | ID=MS.gene05873.t1.exon4;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3436402 | 3436553 | 3436402 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3436647 | 3436752 | 3436647 | ID=MS.gene05873.t1.exon5;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3436647 | 3436752 | 3436647 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3437106 | 3437171 | 3437106 | ID=MS.gene05873.t1.exon6;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3437106 | 3437171 | 3437106 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3437289 | 3437384 | 3437289 | ID=MS.gene05873.t1.exon7;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3437289 | 3437384 | 3437289 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3437500 | 3437571 | 3437500 | ID=MS.gene05873.t1.exon8;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3437500 | 3437571 | 3437500 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3437658 | 3437741 | 3437658 | ID=MS.gene05873.t1.exon9;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3437658 | 3437741 | 3437658 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3437823 | 3437921 | 3437823 | ID=MS.gene05873.t1.exon10;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3437823 | 3437921 | 3437823 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3438066 | 3438113 | 3438066 | ID=MS.gene05873.t1.exon11;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3438066 | 3438113 | 3438066 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3438223 | 3438276 | 3438223 | ID=MS.gene05873.t1.exon12;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3438223 | 3438276 | 3438223 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3438384 | 3438482 | 3438384 | ID=MS.gene05873.t1.exon13;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3438384 | 3438482 | 3438384 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3438570 | 3438659 | 3438570 | ID=MS.gene05873.t1.exon14;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3438570 | 3438659 | 3438570 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3438756 | 3438833 | 3438756 | ID=MS.gene05873.t1.exon15;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3438756 | 3438833 | 3438756 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3438939 | 3439013 | 3438939 | ID=MS.gene05873.t1.exon16;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3438939 | 3439013 | 3438939 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3439096 | 3439186 | 3439096 | ID=MS.gene05873.t1.exon17;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3439096 | 3439186 | 3439096 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3439310 | 3439438 | 3439310 | ID=MS.gene05873.t1.exon18;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3439310 | 3439438 | 3439310 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| chr4.4 | exon | 3439545 | 3439633 | 3439545 | ID=MS.gene05873.t1.exon19;Parent=MS.gene05873.t1 |
| chr4.4 | CDS | 3439545 | 3439633 | 3439545 | ID=cds.MS.gene05873.t1;Parent=MS.gene05873.t1 |
| Gene Sequence |
| Protein sequence |
