Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062354.t1 | XP_003617446.1 | 99.3 | 407 | 3 | 0 | 1 | 407 | 133 | 539 | 1.90E-232 | 814.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062354.t1 | Q9SHJ5 | 64.5 | 409 | 133 | 6 | 1 | 398 | 178 | 585 | 2.4e-146 | 520.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062354.t1 | G7K3C7 | 99.3 | 407 | 3 | 0 | 1 | 407 | 133 | 539 | 1.4e-232 | 814.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene062354 | 0.818127 | 2.31E-52 | -1.69E-46 |
| MS.gene049382 | MS.gene062354 | 0.825836 | 3.77E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene062354 | 0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene062354 | 0.842235 | 2.93E-58 | -1.69E-46 |
| MS.gene050226 | MS.gene062354 | 0.806196 | 9.25E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene062354 | 0.802699 | 4.96E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene062354 | 0.801885 | 7.29E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene062354 | 0.808451 | 3.08E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene062354 | 0.849078 | 4.07E-60 | -1.69E-46 |
| MS.gene050623 | MS.gene062354 | -0.810205 | 1.29E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene062354 | 0.832988 | 6.90E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene062354 | 0.836958 | 6.89E-57 | -1.69E-46 |
| MS.gene050807 | MS.gene062354 | 0.807514 | 4.87E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene062354 | 0.846943 | 1.58E-59 | -1.69E-46 |
| MS.gene051626 | MS.gene062354 | 0.8313 | 1.81E-55 | -1.69E-46 |
| MS.gene051789 | MS.gene062354 | 0.839266 | 1.76E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene062354 | 0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene062354 | 0.805173 | 1.52E-49 | -1.69E-46 |
| MS.gene052337 | MS.gene062354 | 0.802636 | 5.11E-49 | -1.69E-46 |
| MS.gene052496 | MS.gene062354 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene062354 | 0.84228 | 2.85E-58 | -1.69E-46 |
| MS.gene052856 | MS.gene062354 | 0.812297 | 4.55E-51 | -1.69E-46 |
| MS.gene052858 | MS.gene062354 | 0.809133 | 2.20E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene062354 | 0.816513 | 5.32E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene062354 | 0.811854 | 5.68E-51 | -1.69E-46 |
| MS.gene052967 | MS.gene062354 | 0.81147 | 6.89E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene062354 | 0.873649 | 1.25E-67 | -1.69E-46 |
| MS.gene053184 | MS.gene062354 | 0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene053204 | MS.gene062354 | 0.800343 | 1.51E-48 | -1.69E-46 |
| MS.gene053630 | MS.gene062354 | 0.808287 | 3.34E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene062354 | 0.809799 | 1.58E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene062354 | 0.865135 | 7.35E-65 | -1.69E-46 |
| MS.gene054185 | MS.gene062354 | 0.859929 | 2.94E-63 | -1.69E-46 |
| MS.gene054379 | MS.gene062354 | 0.827978 | 1.16E-54 | -1.69E-46 |
| MS.gene054596 | MS.gene062354 | 0.840549 | 8.13E-58 | -1.69E-46 |
| MS.gene054833 | MS.gene062354 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene055133 | MS.gene062354 | 0.812814 | 3.51E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene062354 | 0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene062354 | -0.825466 | 4.62E-54 | -1.69E-46 |
| MS.gene056760 | MS.gene062354 | 0.821617 | 3.67E-53 | -1.69E-46 |
| MS.gene056875 | MS.gene062354 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene062354 | 0.810763 | 9.81E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene062354 | 0.808643 | 2.80E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene062354 | 0.802287 | 6.03E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene062354 | 0.859653 | 3.56E-63 | -1.69E-46 |
| MS.gene058906 | MS.gene062354 | 0.808619 | 2.83E-50 | -1.69E-46 |
| MS.gene058982 | MS.gene062354 | 0.800928 | 1.14E-48 | -1.69E-46 |
| MS.gene059006 | MS.gene062354 | 0.838909 | 2.17E-57 | -1.69E-46 |
| MS.gene059124 | MS.gene062354 | 0.84716 | 1.38E-59 | -1.69E-46 |
| MS.gene059421 | MS.gene062354 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene062354 | 0.805496 | 1.30E-49 | -1.69E-46 |
| MS.gene060470 | MS.gene062354 | 0.812156 | 4.88E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene062354 | 0.823843 | 1.11E-53 | -1.69E-46 |
| MS.gene060480 | MS.gene062354 | 0.815199 | 1.04E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene062354 | 0.808109 | 3.64E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene062354 | 0.806952 | 6.41E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene062354 | 0.821776 | 3.37E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062354 | MS.gene20875 | PPI |
| MS.gene005496 | MS.gene062354 | PPI |
| MS.gene07326 | MS.gene062354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062354.t1 | MTR_5g091660 | 99.263 | 407 | 3 | 0 | 1 | 407 | 133 | 539 | 0.0 | 833 |
| MS.gene062354.t1 | MTR_3g448430 | 70.426 | 399 | 113 | 3 | 1 | 397 | 116 | 511 | 0.0 | 580 |
| MS.gene062354.t1 | MTR_3g048330 | 76.727 | 275 | 60 | 2 | 129 | 399 | 1 | 275 | 7.24e-153 | 433 |
| MS.gene062354.t1 | MTR_1g040500 | 51.951 | 410 | 184 | 4 | 1 | 402 | 92 | 496 | 1.83e-145 | 425 |
| MS.gene062354.t1 | MTR_5g061520 | 49.751 | 402 | 185 | 6 | 4 | 396 | 87 | 480 | 5.25e-137 | 401 |
| MS.gene062354.t1 | MTR_4g415290 | 52.099 | 405 | 182 | 6 | 1 | 399 | 93 | 491 | 5.36e-136 | 399 |
| MS.gene062354.t1 | MTR_1g086650 | 50.860 | 407 | 186 | 8 | 4 | 402 | 134 | 534 | 1.36e-135 | 399 |
| MS.gene062354.t1 | MTR_7g067380 | 52.239 | 402 | 181 | 6 | 1 | 397 | 96 | 491 | 1.26e-134 | 395 |
| MS.gene062354.t1 | MTR_5g080360 | 47.666 | 407 | 203 | 5 | 1 | 401 | 74 | 476 | 1.46e-128 | 379 |
| MS.gene062354.t1 | MTR_8g030620 | 46.359 | 412 | 209 | 6 | 1 | 405 | 99 | 505 | 1.36e-124 | 370 |
| MS.gene062354.t1 | MTR_7g075930 | 59.524 | 84 | 16 | 1 | 144 | 227 | 3 | 68 | 2.83e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062354.t1 | AT1G06520 | 64.548 | 409 | 133 | 6 | 1 | 398 | 178 | 585 | 0.0 | 536 |
| MS.gene062354.t1 | AT1G02390 | 49.879 | 413 | 186 | 8 | 4 | 399 | 121 | 529 | 1.15e-130 | 386 |
| MS.gene062354.t1 | AT4G01950 | 49.877 | 407 | 187 | 10 | 6 | 399 | 117 | 519 | 4.02e-129 | 382 |
| MS.gene062354.t1 | AT3G11430 | 49.029 | 412 | 198 | 7 | 1 | 405 | 83 | 489 | 7.40e-129 | 380 |
| MS.gene062354.t1 | AT4G01950 | 49.877 | 407 | 187 | 10 | 6 | 399 | 145 | 547 | 1.13e-128 | 382 |
| MS.gene062354.t1 | AT2G38110 | 50.123 | 405 | 188 | 7 | 1 | 397 | 96 | 494 | 4.69e-128 | 379 |
| MS.gene062354.t1 | AT5G06090 | 47.445 | 411 | 208 | 6 | 1 | 406 | 81 | 488 | 6.20e-126 | 373 |
| MS.gene062354.t1 | AT4G00400 | 46.117 | 412 | 210 | 6 | 1 | 405 | 94 | 500 | 1.11e-123 | 367 |
| MS.gene062354.t1 | AT1G01610 | 46.117 | 412 | 209 | 8 | 1 | 404 | 94 | 500 | 1.27e-116 | 349 |
| MS.gene062354.t1 | AT3G11325 | 43.542 | 271 | 113 | 3 | 135 | 401 | 139 | 373 | 7.96e-72 | 230 |
| MS.gene062354.t1 | AT3G11325 | 43.542 | 271 | 113 | 3 | 135 | 401 | 142 | 376 | 9.63e-72 | 230 |
Find 69 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATGTTACTGCAGTTAA+AGG | 0.179389 | 5.1:+73291854 | None:intergenic |
| CTTCCATCATGAAATATTAA+TGG | 0.211384 | 5.1:+73292139 | None:intergenic |
| AGAGCACTTAAAGAGTATTT+TGG | 0.236160 | 5.1:-73292641 | MS.gene062354:CDS |
| AGTTATCATATTCAAATTCT+TGG | 0.253973 | 5.1:-73291536 | MS.gene062354:CDS |
| CCAGCACATGTAAGTTCTTT+AGG | 0.260758 | 5.1:+73291506 | None:intergenic |
| GGTGATAGAAAACCTGATAT+TGG | 0.266071 | 5.1:-73292620 | MS.gene062354:CDS |
| TCTCTACATGTTGTTCCTTC+AGG | 0.287385 | 5.1:+73291713 | None:intergenic |
| GCAATTTATAGAATCCTTCT+TGG | 0.289025 | 5.1:-73292046 | MS.gene062354:CDS |
| AAACAGTTGGGTGATGCTTT+GGG | 0.297561 | 5.1:-73291446 | MS.gene062354:CDS |
| TTACAAATTAGCACTTGAAT+TGG | 0.315340 | 5.1:-73292011 | MS.gene062354:CDS |
| GGCACAGAGTTACACACTTT+TGG | 0.319357 | 5.1:-73292713 | MS.gene062354:CDS |
| TAGCACTTGAATTGGGAGTT+TGG | 0.323759 | 5.1:-73292003 | MS.gene062354:CDS |
| TCATGAAATATTAATGGCTT+TGG | 0.325007 | 5.1:+73292145 | None:intergenic |
| TCCCTTGGCATGATTGAGTT+TGG | 0.327913 | 5.1:+73292175 | None:intergenic |
| GAACTAAACCTTAACAAATA+TGG | 0.328528 | 5.1:+73291689 | None:intergenic |
| TATGAGGTTCTTGCTTCAGC+TGG | 0.331253 | 5.1:-73292818 | MS.gene062354:CDS |
| ACAAACAAAACACCTTTGTT+TGG | 0.332605 | 5.1:+73291932 | None:intergenic |
| GAAGTTCCAATTCCAATATC+AGG | 0.337684 | 5.1:+73292608 | None:intergenic |
| GAAACAGTTGGGTGATGCTT+TGG | 0.337863 | 5.1:-73291447 | MS.gene062354:CDS |
| AGAAAACCTGATATTGGAAT+TGG | 0.340801 | 5.1:-73292614 | MS.gene062354:CDS |
| GGCTTTGGATATTTGTCCCT+TGG | 0.362641 | 5.1:+73292160 | None:intergenic |
| GATAAGTATATGATGCTTGC+AGG | 0.371641 | 5.1:-73291395 | MS.gene062354:CDS |
| AATTCAAGTGCTAATTTGTA+AGG | 0.371660 | 5.1:+73292013 | None:intergenic |
| TAGTTCATTGTTTGCTGAGT+TGG | 0.382543 | 5.1:-73291672 | MS.gene062354:CDS |
| AATGATGTGCTTAAGAAAAC+AGG | 0.399947 | 5.1:+73291884 | None:intergenic |
| GTAGAGAACCATATTTGTTA+AGG | 0.401265 | 5.1:-73291697 | MS.gene062354:CDS |
| TGAATATGATAACTTGGCTT+AGG | 0.405031 | 5.1:+73291545 | None:intergenic |
| AGCTAGCGGATTGAAGTGTT+TGG | 0.407360 | 5.1:-73291591 | MS.gene062354:CDS |
| GTTATCATATTCAAATTCTT+GGG | 0.414102 | 5.1:-73291535 | MS.gene062354:CDS |
| TACAAATTAGCACTTGAATT+GGG | 0.425342 | 5.1:-73292010 | MS.gene062354:CDS |
| TCTTAATCTTCAAGTTTATG+AGG | 0.426090 | 5.1:-73292834 | MS.gene062354:CDS |
| CACAAGTGTGCCTAGAGTTA+TGG | 0.426617 | 5.1:-73292780 | MS.gene062354:CDS |
| AGATTCTCTAAATAAAACTT+TGG | 0.454948 | 5.1:+73292854 | None:intergenic |
| GTGCCTAGAGTTATGGTAGA+AGG | 0.456952 | 5.1:-73292773 | MS.gene062354:CDS |
| ATGAGGTTCTTGCTTCAGCT+GGG | 0.457350 | 5.1:-73292817 | MS.gene062354:CDS |
| ATTGCTAAAATAATTCCAAT+TGG | 0.461462 | 5.1:+73292064 | None:intergenic |
| AGAATTTGAATATGATAACT+TGG | 0.464884 | 5.1:+73291539 | None:intergenic |
| ATGATGCTTGCAGGGAATGA+AGG | 0.469185 | 5.1:-73291386 | MS.gene062354:CDS |
| ATGCACACATAGGACATTGT+TGG | 0.480393 | 5.1:-73291909 | MS.gene062354:CDS |
| ATGTTCATGTGGCTACCAAT+TGG | 0.484031 | 5.1:-73292079 | MS.gene062354:CDS |
| TAATTATATACAGAAACAGT+TGG | 0.495466 | 5.1:-73291459 | MS.gene062354:CDS |
| TTTAAAACTTACCTTGCAAG+TGG | 0.500492 | 5.1:+73292559 | None:intergenic |
| GATTTAGTTGTTTGTCCTGA+AGG | 0.517928 | 5.1:-73291728 | MS.gene062354:CDS |
| CAAGTGCTAATTTGTAAGGA+AGG | 0.518754 | 5.1:+73292017 | None:intergenic |
| CCTAAAGAACTTACATGTGC+TGG | 0.521671 | 5.1:-73291506 | MS.gene062354:CDS |
| TCATATTCAAATTCTTGGGA+AGG | 0.522054 | 5.1:-73291531 | MS.gene062354:CDS |
| AGGACATGGAAAATGTTTCA+AGG | 0.522825 | 5.1:-73292886 | None:intergenic |
| GGACATGGAAAATGTTTCAA+GGG | 0.537352 | 5.1:-73292885 | None:intergenic |
| TGATGCTTGCAGGGAATGAA+GGG | 0.541271 | 5.1:-73291385 | MS.gene062354:CDS |
| TTGAAAGAGTATTTGAGTGT+CGG | 0.541833 | 5.1:-73292746 | MS.gene062354:CDS |
| AACAGTTGGGTGATGCTTTG+GGG | 0.543063 | 5.1:-73291445 | MS.gene062354:CDS |
| AAGCCATTAATATTTCATGA+TGG | 0.544073 | 5.1:-73292142 | MS.gene062354:CDS |
| AATCCTTCTACCATAACTCT+AGG | 0.553018 | 5.1:+73292770 | None:intergenic |
| AATTATATACAGAAACAGTT+GGG | 0.561344 | 5.1:-73291458 | MS.gene062354:CDS |
| CTTGAATTGGGAGTTTGGAG+TGG | 0.566374 | 5.1:-73291998 | MS.gene062354:CDS |
| ATGCAAAAGTTACTAAGAGA+AGG | 0.576242 | 5.1:-73291752 | MS.gene062354:CDS |
| GTCCAAACTCAATCATGCCA+AGG | 0.578628 | 5.1:-73292177 | MS.gene062354:CDS |
| GAACATGTAGAGTGTTGCTA+AGG | 0.578977 | 5.1:+73292096 | None:intergenic |
| TAGAGTGTTGCTAAGGGTGT+TGG | 0.593516 | 5.1:+73292103 | None:intergenic |
| ACATGAGTATTCATTGCCAC+AGG | 0.603998 | 5.1:+73291635 | None:intergenic |
| AAAGAACTTACATGTGCTGG+TGG | 0.610061 | 5.1:-73291503 | MS.gene062354:CDS |
| ATAAGTATATGATGCTTGCA+GGG | 0.611754 | 5.1:-73291394 | MS.gene062354:CDS |
| AAGGAAGGAAAATACCAAGA+AGG | 0.620364 | 5.1:+73292032 | None:intergenic |
| TCCAAACTCAATCATGCCAA+GGG | 0.637627 | 5.1:-73292176 | MS.gene062354:CDS |
| ACAAGAGACAGAAAACAAGA+TGG | 0.639648 | 5.1:-73291782 | MS.gene062354:CDS |
| ACACTTCAATCCGCTAGCTG+TGG | 0.639946 | 5.1:+73291595 | None:intergenic |
| CAACACTCTACATGTTCATG+TGG | 0.648188 | 5.1:-73292090 | MS.gene062354:CDS |
| GGCTAATGAGATAGTGCCTG+TGG | 0.689080 | 5.1:-73291651 | MS.gene062354:CDS |
| AACATGTAGAGTGTTGCTAA+GGG | 0.697607 | 5.1:+73292097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATTCCAAATA+AGG | + | chr5.1:73291872-73291891 | None:intergenic | 10.0% |
| !! | TAAATTAATTATGTTCTATA+TGG | + | chr5.1:73291930-73291949 | None:intergenic | 10.0% |
| !! | AACATTATTATTTCCTTATT+TGG | - | chr5.1:73291856-73291875 | MS.gene062354:CDS | 15.0% |
| !!! | AAGGAAATAATAATGTTTTT+TGG | + | chr5.1:73291853-73291872 | None:intergenic | 15.0% |
| !!! | ATTATTATTTTCTAACTGTT+GGG | - | chr5.1:73291754-73291773 | MS.gene062354:CDS | 15.0% |
| !! | AAAAAAACAAAACCAAACAA+AGG | - | chr5.1:73292283-73292302 | MS.gene062354:intron | 20.0% |
| !! | AATTATATACAGAAACAGTT+GGG | - | chr5.1:73292769-73292788 | MS.gene062354:CDS | 20.0% |
| !! | AGAATTTGAATATGATAACT+TGG | + | chr5.1:73292691-73292710 | None:intergenic | 20.0% |
| !! | AGATTCTCTAAATAAAACTT+TGG | + | chr5.1:73291376-73291395 | None:intergenic | 20.0% |
| !! | AGTTATCATATTCAAATTCT+TGG | - | chr5.1:73292691-73292710 | MS.gene062354:CDS | 20.0% |
| !! | ATTGCTAAAATAATTCCAAT+TGG | + | chr5.1:73292166-73292185 | None:intergenic | 20.0% |
| !! | GTTATCATATTCAAATTCTT+GGG | - | chr5.1:73292692-73292711 | MS.gene062354:CDS | 20.0% |
| !! | TAATTATATACAGAAACAGT+TGG | - | chr5.1:73292768-73292787 | MS.gene062354:CDS | 20.0% |
| !!! | AACAATTTTTTTTAAAGGGT+TGG | - | chr5.1:73291689-73291708 | MS.gene062354:CDS | 20.0% |
| !!! | CATTATTATTTTCTAACTGT+TGG | - | chr5.1:73291753-73291772 | MS.gene062354:CDS | 20.0% |
| !!! | TGTTTGGTTTTGTTTTTTTA+GGG | + | chr5.1:73292282-73292301 | None:intergenic | 20.0% |
| !!! | TTCAATGTACAAATTTTACT+AGG | - | chr5.1:73292806-73292825 | MS.gene062354:CDS | 20.0% |
| !!! | TTGTTTGGTTTTGTTTTTTT+AGG | + | chr5.1:73292283-73292302 | None:intergenic | 20.0% |
| ! | AAGCCATTAATATTTCATGA+TGG | - | chr5.1:73292085-73292104 | MS.gene062354:CDS | 25.0% |
| ! | CTTCCATCATGAAATATTAA+TGG | + | chr5.1:73292091-73292110 | None:intergenic | 25.0% |
| ! | GAACTAAACCTTAACAAATA+TGG | + | chr5.1:73292541-73292560 | None:intergenic | 25.0% |
| ! | GGATTCATCAAGAAAAAAAT+AGG | + | chr5.1:73292664-73292683 | None:intergenic | 25.0% |
| ! | TACAAATTAGCACTTGAATT+GGG | - | chr5.1:73292217-73292236 | MS.gene062354:CDS | 25.0% |
| ! | TCATGAAATATTAATGGCTT+TGG | + | chr5.1:73292085-73292104 | None:intergenic | 25.0% |
| ! | TTACAAATTAGCACTTGAAT+TGG | - | chr5.1:73292216-73292235 | MS.gene062354:CDS | 25.0% |
| !! | AATGTACAAATTTTACTAGG+AGG | - | chr5.1:73292809-73292828 | MS.gene062354:CDS | 25.0% |
| !! | AATTCAAGTGCTAATTTGTA+AGG | + | chr5.1:73292217-73292236 | None:intergenic | 25.0% |
| !! | ATGTACAAATTTTACTAGGA+GGG | - | chr5.1:73292810-73292829 | MS.gene062354:CDS | 25.0% |
| !! | TCTTAATCTTCAAGTTTATG+AGG | - | chr5.1:73291393-73291412 | MS.gene062354:CDS | 25.0% |
| !!! | GTTAATCTCACTGTTTTTAT+TGG | + | chr5.1:73292427-73292446 | None:intergenic | 25.0% |
| AATGATGTGCTTAAGAAAAC+AGG | + | chr5.1:73292346-73292365 | None:intergenic | 30.0% | |
| ACAAACAAAACACCTTTGTT+TGG | + | chr5.1:73292298-73292317 | None:intergenic | 30.0% | |
| AGAAAACCTGATATTGGAAT+TGG | - | chr5.1:73291613-73291632 | MS.gene062354:CDS | 30.0% | |
| ATAAGTATATGATGCTTGCA+GGG | - | chr5.1:73292833-73292852 | MS.gene062354:CDS | 30.0% | |
| ATGCAAAAGTTACTAAGAGA+AGG | - | chr5.1:73292475-73292494 | MS.gene062354:intron | 30.0% | |
| CTATATGTTACTGCAGTTAA+AGG | + | chr5.1:73292376-73292395 | None:intergenic | 30.0% | |
| GCAATTTATAGAATCCTTCT+TGG | - | chr5.1:73292181-73292200 | MS.gene062354:CDS | 30.0% | |
| GGCATAGATCTAAAAATCAA+AGG | - | chr5.1:73292250-73292269 | MS.gene062354:intron | 30.0% | |
| TCATATTCAAATTCTTGGGA+AGG | - | chr5.1:73292696-73292715 | MS.gene062354:CDS | 30.0% | |
| TGAATATGATAACTTGGCTT+AGG | + | chr5.1:73292685-73292704 | None:intergenic | 30.0% | |
| ! | GTAGAGAACCATATTTGTTA+AGG | - | chr5.1:73292530-73292549 | MS.gene062354:intron | 30.0% |
| ! | TTTAAAACTTACCTTGCAAG+TGG | + | chr5.1:73291671-73291690 | None:intergenic | 30.0% |
| !! | TTGAAAGAGTATTTGAGTGT+CGG | - | chr5.1:73291481-73291500 | MS.gene062354:CDS | 30.0% |
| !! | TTTTGTTTGTATGCACACAT+AGG | - | chr5.1:73292308-73292327 | MS.gene062354:intron | 30.0% |
| !!! | AGAGCACTTAAAGAGTATTT+TGG | - | chr5.1:73291586-73291605 | MS.gene062354:CDS | 30.0% |
| !!! | TTTTTTTAAAGGGTTGGCAA+AGG | - | chr5.1:73291695-73291714 | MS.gene062354:CDS | 30.0% |
| AAGGAAGGAAAATACCAAGA+AGG | + | chr5.1:73292198-73292217 | None:intergenic | 35.0% | |
| AATCCTTCTACCATAACTCT+AGG | + | chr5.1:73291460-73291479 | None:intergenic | 35.0% | |
| ACAAGAGACAGAAAACAAGA+TGG | - | chr5.1:73292445-73292464 | MS.gene062354:intron | 35.0% | |
| GAAGTTCCAATTCCAATATC+AGG | + | chr5.1:73291622-73291641 | None:intergenic | 35.0% | |
| GATAAGTATATGATGCTTGC+AGG | - | chr5.1:73292832-73292851 | MS.gene062354:CDS | 35.0% | |
| GATTTAGTTGTTTGTCCTGA+AGG | - | chr5.1:73292499-73292518 | MS.gene062354:intron | 35.0% | |
| GGTGATAGAAAACCTGATAT+TGG | - | chr5.1:73291607-73291626 | MS.gene062354:CDS | 35.0% | |
| ! | ACTCATGTCAGCATGTTTTA+TGG | - | chr5.1:73292607-73292626 | MS.gene062354:CDS | 35.0% |
| ! | CAAGTGCTAATTTGTAAGGA+AGG | + | chr5.1:73292213-73292232 | None:intergenic | 35.0% |
| ! | CTCATGTCAGCATGTTTTAT+GGG | - | chr5.1:73292608-73292627 | MS.gene062354:CDS | 35.0% |
| ! | TAGTTCATTGTTTGCTGAGT+TGG | - | chr5.1:73292555-73292574 | MS.gene062354:intron | 35.0% |
| ! | TCTTTTCATTTCCACTTGCA+AGG | - | chr5.1:73291657-73291676 | MS.gene062354:CDS | 35.0% |
| !! | AACATGTAGAGTGTTGCTAA+GGG | + | chr5.1:73292133-73292152 | None:intergenic | 35.0% |
| AAACAGTTGGGTGATGCTTT+GGG | - | chr5.1:73292781-73292800 | MS.gene062354:CDS | 40.0% | |
| AAAGAACTTACATGTGCTGG+TGG | - | chr5.1:73292724-73292743 | MS.gene062354:CDS | 40.0% | |
| ACATGAGTATTCATTGCCAC+AGG | + | chr5.1:73292595-73292614 | None:intergenic | 40.0% | |
| ATGCACACATAGGACATTGT+TGG | - | chr5.1:73292318-73292337 | MS.gene062354:intron | 40.0% | |
| ATGTTCATGTGGCTACCAAT+TGG | - | chr5.1:73292148-73292167 | MS.gene062354:CDS | 40.0% | |
| CAACACTCTACATGTTCATG+TGG | - | chr5.1:73292137-73292156 | MS.gene062354:CDS | 40.0% | |
| CCAGCACATGTAAGTTCTTT+AGG | + | chr5.1:73292724-73292743 | None:intergenic | 40.0% | |
| CCTAAAGAACTTACATGTGC+TGG | - | chr5.1:73292721-73292740 | MS.gene062354:CDS | 40.0% | |
| TAGCACTTGAATTGGGAGTT+TGG | - | chr5.1:73292224-73292243 | MS.gene062354:intron | 40.0% | |
| TCCAAACTCAATCATGCCAA+GGG | - | chr5.1:73292051-73292070 | MS.gene062354:CDS | 40.0% | |
| TCTCTACATGTTGTTCCTTC+AGG | + | chr5.1:73292517-73292536 | None:intergenic | 40.0% | |
| TTCCTGTCATAATCATGCAG+AGG | + | chr5.1:73291996-73292015 | None:intergenic | 40.0% | |
| ! | TGTGTGAGTGTTGTAAACCT+GGG | - | chr5.1:73291804-73291823 | MS.gene062354:CDS | 40.0% |
| !! | ACTTTTGGTTGCTACTTCAC+TGG | - | chr5.1:73291529-73291548 | MS.gene062354:CDS | 40.0% |
| !! | GAACATGTAGAGTGTTGCTA+AGG | + | chr5.1:73292134-73292153 | None:intergenic | 40.0% |
| !!! | ACTGGTTTTCTCACTAGTTC+TGG | - | chr5.1:73291547-73291566 | MS.gene062354:CDS | 40.0% |
| !!! | TTGAGTGTCGGTGATGTTTT+AGG | - | chr5.1:73291493-73291512 | MS.gene062354:CDS | 40.0% |
| AACAGTTGGGTGATGCTTTG+GGG | - | chr5.1:73292782-73292801 | MS.gene062354:CDS | 45.0% | |
| ATGAGGTTCTTGCTTCAGCT+GGG | - | chr5.1:73291410-73291429 | MS.gene062354:CDS | 45.0% | |
| ATGATGCTTGCAGGGAATGA+AGG | - | chr5.1:73292841-73292860 | MS.gene062354:CDS | 45.0% | |
| CACAAGTGTGCCTAGAGTTA+TGG | - | chr5.1:73291447-73291466 | MS.gene062354:CDS | 45.0% | |
| CACCTCTGCATGATTATGAC+AGG | - | chr5.1:73291991-73292010 | MS.gene062354:CDS | 45.0% | |
| CTGTCATAATCATGCAGAGG+TGG | + | chr5.1:73291993-73292012 | None:intergenic | 45.0% | |
| CTTGAATTGGGAGTTTGGAG+TGG | - | chr5.1:73292229-73292248 | MS.gene062354:intron | 45.0% | |
| GAAACAGTTGGGTGATGCTT+TGG | - | chr5.1:73292780-73292799 | MS.gene062354:CDS | 45.0% | |
| GAAATCGAACTCAATACCCC+AGG | + | chr5.1:73291824-73291843 | None:intergenic | 45.0% | |
| GTCCAAACTCAATCATGCCA+AGG | - | chr5.1:73292050-73292069 | MS.gene062354:CDS | 45.0% | |
| GTGCCTAGAGTTATGGTAGA+AGG | - | chr5.1:73291454-73291473 | MS.gene062354:CDS | 45.0% | |
| TATGAGGTTCTTGCTTCAGC+TGG | - | chr5.1:73291409-73291428 | MS.gene062354:CDS | 45.0% | |
| TCCCTTGGCATGATTGAGTT+TGG | + | chr5.1:73292055-73292074 | None:intergenic | 45.0% | |
| TGATGCTTGCAGGGAATGAA+GGG | - | chr5.1:73292842-73292861 | MS.gene062354:CDS | 45.0% | |
| TTGGGTCTAGTGCAAGTAGT+TGG | - | chr5.1:73291772-73291791 | MS.gene062354:CDS | 45.0% | |
| ! | GGCACAGAGTTACACACTTT+TGG | - | chr5.1:73291514-73291533 | MS.gene062354:CDS | 45.0% |
| ! | GTGTGAGTGTTGTAAACCTG+GGG | - | chr5.1:73291805-73291824 | MS.gene062354:CDS | 45.0% |
| ! | GTGTGTGAGTGTTGTAAACC+TGG | - | chr5.1:73291803-73291822 | MS.gene062354:CDS | 45.0% |
| ! | TTTTATGGGACCACAGCTAG+CGG | - | chr5.1:73292622-73292641 | MS.gene062354:CDS | 45.0% |
| !! | AGCTAGCGGATTGAAGTGTT+TGG | - | chr5.1:73292636-73292655 | MS.gene062354:CDS | 45.0% |
| !! | GGCTTTGGATATTTGTCCCT+TGG | + | chr5.1:73292070-73292089 | None:intergenic | 45.0% |
| !! | TAGAGTGTTGCTAAGGGTGT+TGG | + | chr5.1:73292127-73292146 | None:intergenic | 45.0% |
| !!! | TTTAAACAATTTTTTTTAAA+GGG | - | chr5.1:73291685-73291704 | MS.gene062354:CDS | 5.0% |
| !!! | TTTTAAACAATTTTTTTTAA+AGG | - | chr5.1:73291684-73291703 | MS.gene062354:CDS | 5.0% |
| ACACTTCAATCCGCTAGCTG+TGG | + | chr5.1:73292635-73292654 | None:intergenic | 50.0% | |
| GGCTAATGAGATAGTGCCTG+TGG | - | chr5.1:73292576-73292595 | MS.gene062354:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 73291346 | 73292903 | 73291346 | ID=MS.gene062354 |
| chr5.1 | mRNA | 73291346 | 73292903 | 73291346 | ID=MS.gene062354.t1;Parent=MS.gene062354 |
| chr5.1 | exon | 73292571 | 73292903 | 73292571 | ID=MS.gene062354.t1.exon1;Parent=MS.gene062354.t1 |
| chr5.1 | CDS | 73292571 | 73292903 | 73292571 | ID=cds.MS.gene062354.t1;Parent=MS.gene062354.t1 |
| chr5.1 | exon | 73291346 | 73292236 | 73291346 | ID=MS.gene062354.t1.exon2;Parent=MS.gene062354.t1 |
| chr5.1 | CDS | 73291346 | 73292236 | 73291346 | ID=cds.MS.gene062354.t1;Parent=MS.gene062354.t1 |
| Gene Sequence |
| Protein sequence |
