Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69575.t1 | KEH33585.1 | 90.9 | 396 | 36 | 0 | 1 | 396 | 116 | 511 | 1.30E-209 | 738.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69575.t1 | Q9SHJ5 | 57.1 | 408 | 164 | 6 | 1 | 397 | 178 | 585 | 3.0e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69575.t1 | A0A072V5Y0 | 90.9 | 396 | 36 | 0 | 1 | 396 | 116 | 511 | 9.6e-210 | 738.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049915 | MS.gene69575 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene69575 | 0.809506 | 1.83E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene69575 | 0.811748 | 6.00E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene69575 | 0.809551 | 1.79E-50 | -1.69E-46 |
| MS.gene050438 | MS.gene69575 | 0.814286 | 1.66E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene69575 | 0.810333 | 1.21E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene69575 | 0.809467 | 1.87E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene69575 | 0.811904 | 5.54E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene69575 | 0.810853 | 9.38E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene69575 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene052255 | MS.gene69575 | 0.82367 | 1.22E-53 | -1.69E-46 |
| MS.gene05288 | MS.gene69575 | 0.805227 | 1.48E-49 | -1.69E-46 |
| MS.gene052902 | MS.gene69575 | 0.812642 | 3.83E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene69575 | 0.80704 | 6.14E-50 | -1.69E-46 |
| MS.gene053184 | MS.gene69575 | 0.815535 | 8.80E-52 | -1.69E-46 |
| MS.gene053584 | MS.gene69575 | 0.81329 | 2.76E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene69575 | 0.809824 | 1.56E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene69575 | 0.810582 | 1.07E-50 | -1.69E-46 |
| MS.gene054185 | MS.gene69575 | 0.81375 | 2.19E-51 | -1.69E-46 |
| MS.gene056875 | MS.gene69575 | 0.804161 | 2.47E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene69575 | 0.805411 | 1.35E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene69575 | 0.83216 | 1.11E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene69575 | 0.807954 | 3.93E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene69575 | 0.840995 | 6.21E-58 | -1.69E-46 |
| MS.gene059124 | MS.gene69575 | 0.871771 | 5.30E-67 | -1.69E-46 |
| MS.gene059128 | MS.gene69575 | 0.808395 | 3.16E-50 | -1.69E-46 |
| MS.gene059421 | MS.gene69575 | 0.804208 | 2.41E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene69575 | 0.805292 | 1.43E-49 | -1.69E-46 |
| MS.gene061085 | MS.gene69575 | 0.800159 | 1.64E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69575 | MS.gene20875 | PPI |
| MS.gene005496 | MS.gene69575 | PPI |
| MS.gene07326 | MS.gene69575 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69575.t1 | MTR_3g448430 | 90.909 | 396 | 36 | 0 | 1 | 396 | 116 | 511 | 0.0 | 748 |
| MS.gene69575.t1 | MTR_5g091660 | 71.072 | 401 | 111 | 3 | 1 | 398 | 133 | 531 | 0.0 | 583 |
| MS.gene69575.t1 | MTR_3g048330 | 83.032 | 277 | 45 | 1 | 126 | 400 | 1 | 277 | 3.19e-169 | 474 |
| MS.gene69575.t1 | MTR_5g061520 | 48.276 | 406 | 194 | 7 | 4 | 400 | 87 | 485 | 1.32e-127 | 377 |
| MS.gene69575.t1 | MTR_1g086650 | 50.493 | 406 | 186 | 9 | 4 | 400 | 134 | 533 | 4.59e-127 | 377 |
| MS.gene69575.t1 | MTR_4g415290 | 47.901 | 405 | 202 | 5 | 1 | 400 | 93 | 493 | 1.07e-126 | 374 |
| MS.gene69575.t1 | MTR_7g067380 | 49.383 | 405 | 195 | 6 | 1 | 400 | 96 | 495 | 1.34e-126 | 374 |
| MS.gene69575.t1 | MTR_1g040500 | 47.666 | 407 | 201 | 5 | 1 | 399 | 92 | 494 | 7.72e-125 | 372 |
| MS.gene69575.t1 | MTR_8g030620 | 44.913 | 403 | 213 | 6 | 1 | 397 | 99 | 498 | 4.12e-117 | 350 |
| MS.gene69575.t1 | MTR_5g080360 | 45.343 | 408 | 204 | 9 | 1 | 397 | 74 | 473 | 2.55e-113 | 340 |
| MS.gene69575.t1 | MTR_7g075930 | 49.412 | 85 | 23 | 2 | 141 | 225 | 3 | 67 | 2.69e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69575.t1 | AT1G06520 | 56.691 | 411 | 161 | 7 | 1 | 397 | 178 | 585 | 8.64e-159 | 459 |
| MS.gene69575.t1 | AT2G38110 | 48.403 | 407 | 199 | 6 | 1 | 400 | 96 | 498 | 1.14e-123 | 367 |
| MS.gene69575.t1 | AT4G01950 | 48.030 | 406 | 197 | 9 | 5 | 398 | 116 | 519 | 2.57e-121 | 362 |
| MS.gene69575.t1 | AT4G01950 | 48.030 | 406 | 197 | 9 | 5 | 398 | 144 | 547 | 9.93e-121 | 361 |
| MS.gene69575.t1 | AT1G02390 | 47.317 | 410 | 202 | 8 | 4 | 399 | 121 | 530 | 6.77e-120 | 358 |
| MS.gene69575.t1 | AT4G00400 | 44.717 | 407 | 208 | 8 | 1 | 397 | 94 | 493 | 1.80e-116 | 348 |
| MS.gene69575.t1 | AT1G01610 | 44.938 | 405 | 211 | 8 | 1 | 397 | 94 | 494 | 1.45e-114 | 344 |
| MS.gene69575.t1 | AT3G11430 | 46.766 | 402 | 205 | 7 | 1 | 396 | 83 | 481 | 2.73e-113 | 340 |
| MS.gene69575.t1 | AT5G06090 | 45.700 | 407 | 204 | 10 | 1 | 397 | 81 | 480 | 9.45e-112 | 337 |
| MS.gene69575.t1 | AT3G11325 | 42.963 | 270 | 118 | 3 | 129 | 397 | 139 | 373 | 4.72e-66 | 215 |
| MS.gene69575.t1 | AT3G11325 | 42.963 | 270 | 118 | 3 | 129 | 397 | 136 | 370 | 5.22e-66 | 215 |
Find 77 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCACTGGTTTGATTTCT+AGG | 0.153443 | 3.1:+34112155 | MS.gene69575:CDS |
| CCAGCACAAGTGAGTTCTTT+TGG | 0.209499 | 3.1:-34113395 | None:intergenic |
| CCTTAAGGCTTATGAGGTTT+TGG | 0.241485 | 3.1:+34112012 | MS.gene69575:CDS |
| CTGCCATCATGAAATATTAA+TGG | 0.272082 | 3.1:-34112756 | None:intergenic |
| CACAAGAAGACTTCTATAAA+TGG | 0.289654 | 3.1:-34112850 | None:intergenic |
| CGGAATTCTTCGCTCCTATT+AGG | 0.303073 | 3.1:+34113084 | MS.gene69575:CDS |
| AAAAGAGTTGGGTGATGCTT+TGG | 0.317799 | 3.1:+34113454 | MS.gene69575:CDS |
| TCATGAAATATTAATGGCTT+TGG | 0.325007 | 3.1:-34112750 | None:intergenic |
| TCCCTACAAGTTGTTCCTTC+AGG | 0.332104 | 3.1:-34113188 | None:intergenic |
| CTTTCATTAATGACATTTAG+TGG | 0.346710 | 3.1:+34112897 | MS.gene69575:CDS |
| CATGGAGAATCTTAACCTTA+AGG | 0.353285 | 3.1:+34111997 | MS.gene69575:CDS |
| CACTTGCGTGCCTAGAGTTA+TGG | 0.356221 | 3.1:+34112060 | MS.gene69575:CDS |
| GTCAAACTCATTGTCCTAAT+AGG | 0.358918 | 3.1:-34113098 | None:intergenic |
| GATAAATATATGATGTTAGC+TGG | 0.365163 | 3.1:+34113506 | MS.gene69575:CDS |
| TCTTAACCTTAAGGCTTATG+AGG | 0.373376 | 3.1:+34112006 | MS.gene69575:CDS |
| TGTTGAACCTTCATTACAAA+TGG | 0.375878 | 3.1:+34112871 | MS.gene69575:CDS |
| GATATTTAGAACCAAGTAAA+GGG | 0.380331 | 3.1:+34112958 | MS.gene69575:CDS |
| AAAGAGTTGGGTGATGCTTT+GGG | 0.380680 | 3.1:+34113455 | MS.gene69575:CDS |
| GACTTCTATAAATGGATAAC+AGG | 0.406814 | 3.1:-34112842 | None:intergenic |
| TAGGCATGGTTTGGTTGATA+AGG | 0.411704 | 3.1:+34112174 | MS.gene69575:CDS |
| CAACTGCTAGTGGATTAAAA+TGG | 0.413228 | 3.1:+34113306 | MS.gene69575:CDS |
| TATGGTGGAAGGGTTTCTTA+AGG | 0.415468 | 3.1:+34112078 | MS.gene69575:CDS |
| AAAGTGTCCATTTGTAATGA+AGG | 0.421476 | 3.1:-34112878 | None:intergenic |
| ACATAGAGTTCCCCTTTACT+TGG | 0.423328 | 3.1:-34112969 | None:intergenic |
| AGATTCTCCATGTAAAACTT+TGG | 0.427361 | 3.1:-34111986 | None:intergenic |
| TTTGATTTCTAGGCATGGTT+TGG | 0.440519 | 3.1:+34112165 | MS.gene69575:CDS |
| TATTATTGAAGTACTTGAAA+AGG | 0.442408 | 3.1:+34113370 | MS.gene69575:CDS |
| ATATAATTAGCCACTTCATA+AGG | 0.451647 | 3.1:-34113428 | None:intergenic |
| CATGTTTATGTGGCTTCCAA+TGG | 0.454634 | 3.1:+34112815 | MS.gene69575:CDS |
| AGAGAGTTGATGAAGGTGTA+GGG | 0.455310 | 3.1:-34112791 | None:intergenic |
| TCCCTTGGCATAATTGAGCT+TGG | 0.456933 | 3.1:-34112720 | None:intergenic |
| GTGCTGCTAATCCCTAAATC+AGG | 0.457994 | 3.1:-34112232 | None:intergenic |
| CCAAAACCTCATAAGCCTTA+AGG | 0.464434 | 3.1:-34112012 | None:intergenic |
| TAGAGAGTTGATGAAGGTGT+AGG | 0.464698 | 3.1:-34112792 | None:intergenic |
| ACTGTTGGATGTTATTTCAC+TGG | 0.471928 | 3.1:+34112142 | MS.gene69575:CDS |
| CATTAATATTTCATGATGGC+AGG | 0.471944 | 3.1:+34112757 | MS.gene69575:CDS |
| CAACTCTCTACATGTTTATG+TGG | 0.476453 | 3.1:+34112805 | MS.gene69575:CDS |
| ATGTTTATGTGGCTTCCAAT+GGG | 0.490126 | 3.1:+34112816 | MS.gene69575:CDS |
| TGCTAGTGGATTAAAATGGT+TGG | 0.500427 | 3.1:+34113310 | MS.gene69575:CDS |
| CCAAAAGAACTCACTTGTGC+TGG | 0.501281 | 3.1:+34113395 | MS.gene69575:CDS |
| ACTGGTTTGATTTCTAGGCA+TGG | 0.501346 | 3.1:+34112160 | MS.gene69575:CDS |
| GTCCTGAAGGAACAACTTGT+AGG | 0.502469 | 3.1:+34113186 | MS.gene69575:CDS |
| CTAATTACAGGAAGCTTATG+TGG | 0.503258 | 3.1:+34112680 | MS.gene69575:intron |
| ACATTAACATTCACAGCCAC+TGG | 0.512902 | 3.1:-34113266 | None:intergenic |
| AAAGAACTCACTTGTGCTGG+TGG | 0.522091 | 3.1:+34113398 | MS.gene69575:CDS |
| GTGCCTAGAGTTATGGTGGA+AGG | 0.527001 | 3.1:+34112067 | MS.gene69575:CDS |
| AGATATTTAGAACCAAGTAA+AGG | 0.527350 | 3.1:+34112957 | MS.gene69575:CDS |
| GAACTAAATCTTAATAGATA+AGG | 0.528244 | 3.1:-34113212 | None:intergenic |
| ATGGATAACAGGACTCCCAT+TGG | 0.532878 | 3.1:-34112831 | None:intergenic |
| ATAAATATATGATGTTAGCT+GGG | 0.539552 | 3.1:+34113507 | MS.gene69575:CDS |
| TGATAAGGATAGTGCTCTCA+AGG | 0.543624 | 3.1:+34112189 | MS.gene69575:CDS |
| TCCTGAAGGAACAACTTGTA+GGG | 0.543671 | 3.1:+34113187 | MS.gene69575:CDS |
| GTCCAAGCTCAATTATGCCA+AGG | 0.561023 | 3.1:+34112718 | MS.gene69575:CDS |
| AAGCCATTAATATTTCATGA+TGG | 0.563899 | 3.1:+34112753 | MS.gene69575:CDS |
| TGCTGATGAGATTGTTCCAG+TGG | 0.567844 | 3.1:+34113250 | MS.gene69575:CDS |
| TCCAAGCTCAATTATGCCAA+GGG | 0.568698 | 3.1:+34112719 | MS.gene69575:CDS |
| TGCCTAGAGTTATGGTGGAA+GGG | 0.568974 | 3.1:+34112068 | MS.gene69575:CDS |
| ATGATGTTAGCTGGGAATGA+AGG | 0.571083 | 3.1:+34113515 | MS.gene69575:CDS |
| AGGACATGGAAATGATTGCA+AGG | 0.571708 | 3.1:+34111954 | None:intergenic |
| GGTATAGTTCTGAATGTCAA+AGG | 0.574113 | 3.1:+34112918 | MS.gene69575:CDS |
| TCAATAATATAACTAGGCCA+TGG | 0.577135 | 3.1:-34113356 | None:intergenic |
| ATGCAAAAGTTGCTAAGTGA+AGG | 0.581573 | 3.1:+34113149 | MS.gene69575:CDS |
| TGGAAAATCTCCTTATGAAG+TGG | 0.581903 | 3.1:+34113418 | MS.gene69575:CDS |
| AGTACTTCAATAATATAACT+AGG | 0.589543 | 3.1:-34113362 | None:intergenic |
| GATTTAGTTGTGTGTCCTGA+AGG | 0.591518 | 3.1:+34113173 | MS.gene69575:CDS |
| GGACATGGAAATGATTGCAA+GGG | 0.595734 | 3.1:+34111955 | None:intergenic |
| GCTACAGAGTTACACACTGT+TGG | 0.597779 | 3.1:+34112127 | MS.gene69575:CDS |
| TTGAGTGTACAAATATTACA+AGG | 0.604181 | 3.1:+34113480 | MS.gene69575:CDS |
| AACCCTTCCACCATAACTCT+AGG | 0.605896 | 3.1:-34112070 | None:intergenic |
| TTGCGTGCCTAGAGTTATGG+TGG | 0.610298 | 3.1:+34112063 | MS.gene69575:CDS |
| CTTGGTTCTAAATATCTCTG+AGG | 0.625814 | 3.1:-34112951 | None:intergenic |
| GTGTACAAATATTACAAGGA+GGG | 0.638648 | 3.1:+34113484 | MS.gene69575:CDS |
| AACATGTAGAGAGTTGATGA+AGG | 0.639833 | 3.1:-34112798 | None:intergenic |
| GTACAGCATAAGCAAAGTGT+CGG | 0.645635 | 3.1:+34113064 | MS.gene69575:CDS |
| AGTGTACAAATATTACAAGG+AGG | 0.666630 | 3.1:+34113483 | MS.gene69575:CDS |
| AACTCTATGTTTGTACACAT+AGG | 0.666897 | 3.1:+34112982 | MS.gene69575:CDS |
| ATATTTAGAACCAAGTAAAG+GGG | 0.672982 | 3.1:+34112959 | MS.gene69575:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATACAAAAAGAGTT+GGG | + | chr3.1:34113443-34113462 | MS.gene69575:CDS | 15.0% |
| !! | ACTACAATATTATAATGAAT+TGG | + | chr3.1:34112591-34112610 | MS.gene69575:intron | 15.0% |
| !! | TAATTATATACAAAAAGAGT+TGG | + | chr3.1:34113442-34113461 | MS.gene69575:CDS | 15.0% |
| !! | TTATAATATTGTAGTTAGAT+AGG | - | chr3.1:34112586-34112605 | None:intergenic | 15.0% |
| !!! | AAATAGTTGATTTAAGAATA+TGG | - | chr3.1:34112482-34112501 | None:intergenic | 15.0% |
| !! | AAACTGAGGTAAAAAAAAAA+AGG | - | chr3.1:34112440-34112459 | None:intergenic | 20.0% |
| !! | AACTGAGGTAAAAAAAAAAA+GGG | - | chr3.1:34112439-34112458 | None:intergenic | 20.0% |
| !! | AGTACTTCAATAATATAACT+AGG | - | chr3.1:34113365-34113384 | None:intergenic | 20.0% |
| !! | ATAAATATATGATGTTAGCT+GGG | + | chr3.1:34113507-34113526 | MS.gene69575:CDS | 20.0% |
| !! | GAACTAAATCTTAATAGATA+AGG | - | chr3.1:34113215-34113234 | None:intergenic | 20.0% |
| !! | TAGTAGGAAAATGAAATTAA+AGG | - | chr3.1:34112620-34112639 | None:intergenic | 20.0% |
| !!! | TATTATTGAAGTACTTGAAA+AGG | + | chr3.1:34113370-34113389 | MS.gene69575:CDS | 20.0% |
| !!! | TTATTTTATCTCTTCTTGTA+AGG | + | chr3.1:34112270-34112289 | MS.gene69575:CDS | 20.0% |
| ! | AAAAAAAAAAAGGGTTCAAG+AGG | - | chr3.1:34112430-34112449 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAGGGTTCAAGA+GGG | - | chr3.1:34112429-34112448 | None:intergenic | 25.0% |
| ! | AAGCCATTAATATTTCATGA+TGG | + | chr3.1:34112753-34112772 | MS.gene69575:CDS | 25.0% |
| ! | ATATAATTAGCCACTTCATA+AGG | - | chr3.1:34113431-34113450 | None:intergenic | 25.0% |
| ! | CTAAGAAATATGCTAATTAC+AGG | + | chr3.1:34112668-34112687 | MS.gene69575:intron | 25.0% |
| ! | CTTTCATTAATGACATTTAG+TGG | + | chr3.1:34112897-34112916 | MS.gene69575:CDS | 25.0% |
| ! | GACTTAGATATAATTGAAGA+TGG | - | chr3.1:34112649-34112668 | None:intergenic | 25.0% |
| ! | GAGATAAAAATCCTGATTTA+GGG | + | chr3.1:34112221-34112240 | MS.gene69575:CDS | 25.0% |
| ! | GATAAATATATGATGTTAGC+TGG | + | chr3.1:34113506-34113525 | MS.gene69575:CDS | 25.0% |
| ! | TCATGAAATATTAATGGCTT+TGG | - | chr3.1:34112753-34112772 | None:intergenic | 25.0% |
| ! | TTGAAGATGGAATAATTAGT+AGG | - | chr3.1:34112636-34112655 | None:intergenic | 25.0% |
| ! | TTGAGTGTACAAATATTACA+AGG | + | chr3.1:34113480-34113499 | MS.gene69575:CDS | 25.0% |
| !! | AGATATTTAGAACCAAGTAA+AGG | + | chr3.1:34112957-34112976 | MS.gene69575:CDS | 25.0% |
| !! | AGTTTTACCAAAGTTTTACA+TGG | + | chr3.1:34111979-34111998 | MS.gene69575:CDS | 25.0% |
| !! | ATATTTAGAACCAAGTAAAG+GGG | + | chr3.1:34112959-34112978 | MS.gene69575:CDS | 25.0% |
| !! | GATATTTAGAACCAAGTAAA+GGG | + | chr3.1:34112958-34112977 | MS.gene69575:CDS | 25.0% |
| !! | GTTAATGTGAGTATGTTTTA+TGG | + | chr3.1:34113281-34113300 | MS.gene69575:CDS | 25.0% |
| !!! | TTCTATTTTTGATGAATCCA+TGG | + | chr3.1:34113339-34113358 | MS.gene69575:CDS | 25.0% |
| AACTCTATGTTTGTACACAT+AGG | + | chr3.1:34112982-34113001 | MS.gene69575:CDS | 30.0% | |
| ACATTTGATCAATGAAACTG+AGG | - | chr3.1:34112454-34112473 | None:intergenic | 30.0% | |
| AGATTCTCCATGTAAAACTT+TGG | - | chr3.1:34111989-34112008 | None:intergenic | 30.0% | |
| AGTGTACAAATATTACAAGG+AGG | + | chr3.1:34113483-34113502 | MS.gene69575:CDS | 30.0% | |
| CACAAGAAGACTTCTATAAA+TGG | - | chr3.1:34112853-34112872 | None:intergenic | 30.0% | |
| CATTAATATTTCATGATGGC+AGG | + | chr3.1:34112757-34112776 | MS.gene69575:CDS | 30.0% | |
| CTGCCATCATGAAATATTAA+TGG | - | chr3.1:34112759-34112778 | None:intergenic | 30.0% | |
| GACTTCTATAAATGGATAAC+AGG | - | chr3.1:34112845-34112864 | None:intergenic | 30.0% | |
| GGAGATAAAAATCCTGATTT+AGG | + | chr3.1:34112220-34112239 | MS.gene69575:CDS | 30.0% | |
| GTGTACAAATATTACAAGGA+GGG | + | chr3.1:34113484-34113503 | MS.gene69575:CDS | 30.0% | |
| TCAATAATATAACTAGGCCA+TGG | - | chr3.1:34113359-34113378 | None:intergenic | 30.0% | |
| TGTTGAACCTTCATTACAAA+TGG | + | chr3.1:34112871-34112890 | MS.gene69575:CDS | 30.0% | |
| ! | AAAGTGTCCATTTGTAATGA+AGG | - | chr3.1:34112881-34112900 | None:intergenic | 30.0% |
| ! | TTGATGTGACTTTGATGATT+TGG | - | chr3.1:34112510-34112529 | None:intergenic | 30.0% |
| !! | ATTTCACTGGTTTGATTTCT+AGG | + | chr3.1:34112155-34112174 | MS.gene69575:CDS | 30.0% |
| AGACTCATGCTAAGAAAAAC+AGG | - | chr3.1:34113020-34113039 | None:intergenic | 35.0% | |
| ATGATGTGAGACTCCTAATT+TGG | + | chr3.1:34112395-34112414 | MS.gene69575:intron | 35.0% | |
| ATGCAAAAGTTGCTAAGTGA+AGG | + | chr3.1:34113149-34113168 | MS.gene69575:CDS | 35.0% | |
| ATGTTTATGTGGCTTCCAAT+GGG | + | chr3.1:34112816-34112835 | MS.gene69575:CDS | 35.0% | |
| CAACTCTCTACATGTTTATG+TGG | + | chr3.1:34112805-34112824 | MS.gene69575:CDS | 35.0% | |
| CATGGAGAATCTTAACCTTA+AGG | + | chr3.1:34111997-34112016 | MS.gene69575:CDS | 35.0% | |
| CTAATTACAGGAAGCTTATG+TGG | + | chr3.1:34112680-34112699 | MS.gene69575:intron | 35.0% | |
| GTCAAACTCATTGTCCTAAT+AGG | - | chr3.1:34113101-34113120 | None:intergenic | 35.0% | |
| TCTTAACCTTAAGGCTTATG+AGG | + | chr3.1:34112006-34112025 | MS.gene69575:CDS | 35.0% | |
| TGGAAAATCTCCTTATGAAG+TGG | + | chr3.1:34113418-34113437 | MS.gene69575:CDS | 35.0% | |
| ! | TTTGATTTCTAGGCATGGTT+TGG | + | chr3.1:34112165-34112184 | MS.gene69575:CDS | 35.0% |
| ! | TTTTATGGTACAACTGCTAG+TGG | + | chr3.1:34113296-34113315 | MS.gene69575:CDS | 35.0% |
| !! | AACATGTAGAGAGTTGATGA+AGG | - | chr3.1:34112801-34112820 | None:intergenic | 35.0% |
| !! | ACTGTTGGATGTTATTTCAC+TGG | + | chr3.1:34112142-34112161 | MS.gene69575:CDS | 35.0% |
| !! | CAACTGCTAGTGGATTAAAA+TGG | + | chr3.1:34113306-34113325 | MS.gene69575:CDS | 35.0% |
| !! | CTTGGTTCTAAATATCTCTG+AGG | - | chr3.1:34112954-34112973 | None:intergenic | 35.0% |
| !! | GGTATAGTTCTGAATGTCAA+AGG | + | chr3.1:34112918-34112937 | MS.gene69575:CDS | 35.0% |
| !! | TGCTAGTGGATTAAAATGGT+TGG | + | chr3.1:34113310-34113329 | MS.gene69575:CDS | 35.0% |
| !!! | AGTGCTCTCAAGGATTTTTT+TGG | + | chr3.1:34112199-34112218 | MS.gene69575:CDS | 35.0% |
| !!! | ATGAGGTTTTGGTTTCTGTA+GGG | + | chr3.1:34112023-34112042 | MS.gene69575:CDS | 35.0% |
| !!! | TATGAGGTTTTGGTTTCTGT+AGG | + | chr3.1:34112022-34112041 | MS.gene69575:CDS | 35.0% |
| AAAAGAGTTGGGTGATGCTT+TGG | + | chr3.1:34113454-34113473 | MS.gene69575:CDS | 40.0% | |
| AAAGAGTTGGGTGATGCTTT+GGG | + | chr3.1:34113455-34113474 | MS.gene69575:CDS | 40.0% | |
| ACATAGAGTTCCCCTTTACT+TGG | - | chr3.1:34112972-34112991 | None:intergenic | 40.0% | |
| ACATTAACATTCACAGCCAC+TGG | - | chr3.1:34113269-34113288 | None:intergenic | 40.0% | |
| ATGATGTTAGCTGGGAATGA+AGG | + | chr3.1:34113515-34113534 | MS.gene69575:CDS | 40.0% | |
| CATGTTTATGTGGCTTCCAA+TGG | + | chr3.1:34112815-34112834 | MS.gene69575:CDS | 40.0% | |
| CCAAAACCTCATAAGCCTTA+AGG | - | chr3.1:34112015-34112034 | None:intergenic | 40.0% | |
| GAGGGTTTCTCATCCAAATT+AGG | - | chr3.1:34112411-34112430 | None:intergenic | 40.0% | |
| GATTTAGTTGTGTGTCCTGA+AGG | + | chr3.1:34113173-34113192 | MS.gene69575:CDS | 40.0% | |
| GTACAGCATAAGCAAAGTGT+CGG | + | chr3.1:34113064-34113083 | MS.gene69575:CDS | 40.0% | |
| TCCAAGCTCAATTATGCCAA+GGG | + | chr3.1:34112719-34112738 | MS.gene69575:CDS | 40.0% | |
| TCCTGAAGGAACAACTTGTA+GGG | + | chr3.1:34113187-34113206 | MS.gene69575:CDS | 40.0% | |
| TGATAAGGATAGTGCTCTCA+AGG | + | chr3.1:34112189-34112208 | MS.gene69575:CDS | 40.0% | |
| ! | CCTTAAGGCTTATGAGGTTT+TGG | + | chr3.1:34112012-34112031 | MS.gene69575:CDS | 40.0% |
| ! | TATGGTGGAAGGGTTTCTTA+AGG | + | chr3.1:34112078-34112097 | MS.gene69575:CDS | 40.0% |
| !! | ACTGGTTTGATTTCTAGGCA+TGG | + | chr3.1:34112160-34112179 | MS.gene69575:CDS | 40.0% |
| !! | AGAGAGTTGATGAAGGTGTA+GGG | - | chr3.1:34112794-34112813 | None:intergenic | 40.0% |
| !! | TAGAGAGTTGATGAAGGTGT+AGG | - | chr3.1:34112795-34112814 | None:intergenic | 40.0% |
| !! | TAGGCATGGTTTGGTTGATA+AGG | + | chr3.1:34112174-34112193 | MS.gene69575:CDS | 40.0% |
| AAAGAACTCACTTGTGCTGG+TGG | + | chr3.1:34113398-34113417 | MS.gene69575:CDS | 45.0% | |
| AACCCTTCCACCATAACTCT+AGG | - | chr3.1:34112073-34112092 | None:intergenic | 45.0% | |
| ATGGATAACAGGACTCCCAT+TGG | - | chr3.1:34112834-34112853 | None:intergenic | 45.0% | |
| CCAAAAGAACTCACTTGTGC+TGG | + | chr3.1:34113395-34113414 | MS.gene69575:CDS | 45.0% | |
| CGGAATTCTTCGCTCCTATT+AGG | + | chr3.1:34113084-34113103 | MS.gene69575:CDS | 45.0% | |
| GCTACAGAGTTACACACTGT+TGG | + | chr3.1:34112127-34112146 | MS.gene69575:CDS | 45.0% | |
| GTCCAAGCTCAATTATGCCA+AGG | + | chr3.1:34112718-34112737 | MS.gene69575:CDS | 45.0% | |
| GTCCTGAAGGAACAACTTGT+AGG | + | chr3.1:34113186-34113205 | MS.gene69575:CDS | 45.0% | |
| TCCCTACAAGTTGTTCCTTC+AGG | - | chr3.1:34113191-34113210 | None:intergenic | 45.0% | |
| TCCCTTGGCATAATTGAGCT+TGG | - | chr3.1:34112723-34112742 | None:intergenic | 45.0% | |
| TGCTGATGAGATTGTTCCAG+TGG | + | chr3.1:34113250-34113269 | MS.gene69575:CDS | 45.0% | |
| ! | CCAGCACAAGTGAGTTCTTT+TGG | - | chr3.1:34113398-34113417 | None:intergenic | 45.0% |
| ! | GTGCTGCTAATCCCTAAATC+AGG | - | chr3.1:34112235-34112254 | None:intergenic | 45.0% |
| ! | TGCCTAGAGTTATGGTGGAA+GGG | + | chr3.1:34112068-34112087 | MS.gene69575:CDS | 45.0% |
| !!! | GGCTTTGGATACTTTTCCCT+TGG | - | chr3.1:34112738-34112757 | None:intergenic | 45.0% |
| CACTTGCGTGCCTAGAGTTA+TGG | + | chr3.1:34112060-34112079 | MS.gene69575:CDS | 50.0% | |
| TTGCGTGCCTAGAGTTATGG+TGG | + | chr3.1:34112063-34112082 | MS.gene69575:CDS | 50.0% | |
| ! | GTGCCTAGAGTTATGGTGGA+AGG | + | chr3.1:34112067-34112086 | MS.gene69575:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 34111959 | 34113559 | 34111959 | ID=MS.gene69575 |
| chr3.1 | mRNA | 34111959 | 34113559 | 34111959 | ID=MS.gene69575.t1;Parent=MS.gene69575 |
| chr3.1 | exon | 34111959 | 34112291 | 34111959 | ID=MS.gene69575.t1.exon1;Parent=MS.gene69575.t1 |
| chr3.1 | CDS | 34111959 | 34112291 | 34111959 | ID=cds.MS.gene69575.t1;Parent=MS.gene69575.t1 |
| chr3.1 | exon | 34112690 | 34113559 | 34112690 | ID=MS.gene69575.t1.exon2;Parent=MS.gene69575.t1 |
| chr3.1 | CDS | 34112690 | 34113559 | 34112690 | ID=cds.MS.gene69575.t1;Parent=MS.gene69575.t1 |
| Gene Sequence |
| Protein sequence |
