Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006767.t1 | XP_003607703.1 | 96 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.50E-61 | 244.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006767.t1 | Q8LDI5 | 58.6 | 111 | 46 | 0 | 10 | 120 | 2 | 112 | 7.6e-35 | 147.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006767.t1 | G7JF34 | 96.0 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 1.8e-61 | 244.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene006767 | MS.gene74758 | PPI |
MS.gene006767 | MS.gene064706 | PPI |
MS.gene006767 | MS.gene043301 | PPI |
MS.gene006767 | MS.gene42302 | PPI |
MS.gene006767 | MS.gene014475 | PPI |
MS.gene006767 | MS.gene27271 | PPI |
MS.gene006767 | MS.gene24227 | PPI |
MS.gene006767 | MS.gene79654 | PPI |
MS.gene006767 | MS.gene69451 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006767.t1 | MTR_4g081380 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 3.40e-88 | 252 |
MS.gene006767.t1 | MTR_2g082590 | 71.311 | 122 | 35 | 0 | 1 | 122 | 1 | 122 | 1.47e-63 | 189 |
MS.gene006767.t1 | MTR_2g082590 | 64.444 | 135 | 35 | 1 | 1 | 122 | 1 | 135 | 3.10e-60 | 181 |
MS.gene006767.t1 | MTR_2g010750 | 59.322 | 118 | 48 | 0 | 6 | 123 | 5 | 122 | 1.76e-49 | 154 |
MS.gene006767.t1 | MTR_4g081380 | 92.208 | 77 | 6 | 0 | 1 | 77 | 1 | 77 | 4.72e-48 | 149 |
MS.gene006767.t1 | MTR_2g010750 | 57.333 | 75 | 32 | 0 | 6 | 80 | 5 | 79 | 4.34e-27 | 96.7 |
MS.gene006767.t1 | MTR_7g009070 | 41.237 | 97 | 57 | 0 | 17 | 113 | 33 | 129 | 4.57e-25 | 92.8 |
MS.gene006767.t1 | MTR_7g073680 | 35.294 | 102 | 66 | 0 | 12 | 113 | 26 | 127 | 1.36e-22 | 86.7 |
MS.gene006767.t1 | MTR_1g023140 | 36.893 | 103 | 65 | 0 | 8 | 110 | 4 | 106 | 6.22e-22 | 84.3 |
MS.gene006767.t1 | MTR_3g112410 | 35.455 | 110 | 67 | 1 | 1 | 110 | 1 | 106 | 1.68e-21 | 83.2 |
MS.gene006767.t1 | MTR_8g005320 | 34.343 | 99 | 65 | 0 | 15 | 113 | 31 | 129 | 3.38e-21 | 82.8 |
MS.gene006767.t1 | MTR_5g021180 | 35.965 | 114 | 71 | 1 | 1 | 114 | 1 | 112 | 3.69e-21 | 82.4 |
MS.gene006767.t1 | MTR_8g006685 | 34.343 | 99 | 65 | 0 | 15 | 113 | 100 | 198 | 2.74e-20 | 82.4 |
MS.gene006767.t1 | MTR_8g006560 | 34.343 | 99 | 65 | 0 | 15 | 113 | 100 | 198 | 2.74e-20 | 82.4 |
MS.gene006767.t1 | MTR_5g037950 | 38.938 | 113 | 65 | 2 | 4 | 114 | 13 | 123 | 2.15e-19 | 77.8 |
MS.gene006767.t1 | MTR_8g107460 | 32.075 | 106 | 72 | 0 | 8 | 113 | 252 | 357 | 1.78e-18 | 79.7 |
MS.gene006767.t1 | MTR_5g037930 | 33.333 | 105 | 70 | 0 | 10 | 114 | 20 | 124 | 5.63e-16 | 69.3 |
MS.gene006767.t1 | MTR_5g037890 | 34.286 | 105 | 69 | 0 | 10 | 114 | 18 | 122 | 1.66e-15 | 67.8 |
MS.gene006767.t1 | MTR_1g098660 | 33.721 | 86 | 55 | 2 | 35 | 118 | 81 | 166 | 2.98e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006767.t1 | AT1G11530 | 58.036 | 112 | 47 | 0 | 10 | 121 | 2 | 113 | 1.49e-48 | 151 |
MS.gene006767.t1 | AT3G51030 | 39.623 | 106 | 64 | 0 | 8 | 113 | 4 | 109 | 4.81e-24 | 89.4 |
MS.gene006767.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.09e-23 | 89.4 |
MS.gene006767.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.09e-23 | 89.4 |
MS.gene006767.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.09e-23 | 89.4 |
MS.gene006767.t1 | AT5G39950 | 37.037 | 108 | 68 | 0 | 6 | 113 | 21 | 128 | 1.42e-23 | 89.0 |
MS.gene006767.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.77e-23 | 89.4 |
MS.gene006767.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.77e-23 | 89.4 |
MS.gene006767.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.77e-23 | 89.4 |
MS.gene006767.t1 | AT1G45145 | 34.286 | 105 | 69 | 0 | 9 | 113 | 4 | 108 | 5.98e-23 | 86.7 |
MS.gene006767.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 9 | 112 | 39 | 142 | 1.21e-22 | 87.0 |
MS.gene006767.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 9 | 112 | 39 | 142 | 1.21e-22 | 87.0 |
MS.gene006767.t1 | AT1G59730 | 34.615 | 104 | 68 | 0 | 12 | 115 | 23 | 126 | 1.31e-21 | 83.6 |
MS.gene006767.t1 | AT5G42980 | 34.906 | 106 | 69 | 0 | 9 | 114 | 4 | 109 | 1.85e-19 | 77.8 |
MS.gene006767.t1 | AT1G19730 | 31.776 | 107 | 72 | 1 | 8 | 113 | 4 | 110 | 9.86e-19 | 76.3 |
MS.gene006767.t1 | AT1G69880 | 29.524 | 105 | 74 | 0 | 12 | 116 | 39 | 143 | 2.94e-17 | 73.2 |
MS.gene006767.t1 | AT3G17880 | 34.211 | 114 | 71 | 1 | 11 | 124 | 264 | 373 | 6.10e-16 | 72.8 |
MS.gene006767.t1 | AT3G17880 | 34.211 | 114 | 71 | 1 | 11 | 124 | 271 | 380 | 6.19e-16 | 72.8 |
MS.gene006767.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 12 | 116 | 86 | 192 | 2.75e-12 | 61.2 |
MS.gene006767.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 12 | 116 | 86 | 192 | 2.75e-12 | 61.2 |
Find 30 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTACAAGGCAACCTTTAT+TGG | 0.239798 | 4.1:-25550954 | None:intergenic |
GTGCAAATCCTGATGAAATT+AGG | 0.320699 | 4.1:+25552334 | MS.gene006767:CDS |
TCCTCCACTCATCAACAAAA+AGG | 0.360970 | 4.1:-25552289 | None:intergenic |
ATCACTGAAGCTACCAATAA+AGG | 0.364334 | 4.1:+25550941 | MS.gene006767:CDS |
GTGATTTGGAGGAATGAGTT+TGG | 0.374475 | 4.1:-25552380 | None:intergenic |
CATGGCATTGATTTCCAACT+TGG | 0.380007 | 4.1:-25552262 | None:intergenic |
CATCATCCATCAGAGTGATT+TGG | 0.391841 | 4.1:-25552394 | None:intergenic |
GGTGGATGTGGACGAAGTTA+AGG | 0.395797 | 4.1:+25551231 | MS.gene006767:CDS |
GATGCTAATTCTTCAAAGAA+AGG | 0.438089 | 4.1:-25551181 | None:intergenic |
GGCATTGATTTCCAACTTGG+AGG | 0.441850 | 4.1:-25552259 | None:intergenic |
CAGAAAGAGGACATCTTGAT+AGG | 0.447661 | 4.1:-25551206 | None:intergenic |
AAAGGGTTCATAGCAATAGA+AGG | 0.450955 | 4.1:-25551163 | None:intergenic |
CCTCTTTCTGAAGGTGGATG+TGG | 0.473122 | 4.1:+25551219 | MS.gene006767:CDS |
GCACCAACAGCTTTCTCCAC+TGG | 0.488674 | 4.1:-25552315 | None:intergenic |
ATGCTAATTCTTCAAAGAAA+GGG | 0.500184 | 4.1:-25551180 | None:intergenic |
CCACATCCACCTTCAGAAAG+AGG | 0.505638 | 4.1:-25551219 | None:intergenic |
ATCCTGATGAAATTAGGAAA+AGG | 0.511549 | 4.1:+25552340 | MS.gene006767:CDS |
CATCCATCAGAGTGATTTGG+AGG | 0.522008 | 4.1:-25552391 | None:intergenic |
ATTCCTCCAAATCACTCTGA+TGG | 0.522941 | 4.1:+25552388 | MS.gene006767:CDS |
AAATTGACTCAAGAAAATCA+TGG | 0.550454 | 4.1:+25550909 | MS.gene006767:CDS |
AATTGACTCAAGAAAATCAT+GGG | 0.553360 | 4.1:+25550910 | MS.gene006767:CDS |
TATTGGTAGCTTCAGTGATG+TGG | 0.558401 | 4.1:-25550937 | None:intergenic |
TCAAGATGTCCTCTTTCTGA+AGG | 0.562276 | 4.1:+25551210 | MS.gene006767:CDS |
AGATGTCCTCTTTCTGAAGG+TGG | 0.570239 | 4.1:+25551213 | MS.gene006767:CDS |
TGATGAAATTAGGAAAAGGA+TGG | 0.577508 | 4.1:+25552344 | MS.gene006767:CDS |
CTAGGAAGTAGCCTCCAAGT+TGG | 0.602024 | 4.1:+25552248 | MS.gene006767:intron |
AATCCAGTGGAGAAAGCTGT+TGG | 0.602305 | 4.1:+25552312 | MS.gene006767:CDS |
AAAGAGGACATCTTGATAGG+TGG | 0.610226 | 4.1:-25551203 | None:intergenic |
AATAAGTAGAAAATAATGGG+TGG | 0.664491 | 4.1:+25550854 | None:intergenic |
GATGAGTGGAGGAAATCCAG+TGG | 0.727295 | 4.1:+25552299 | MS.gene006767:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCTATATAGTTATATTAAT+AGG | + | chr4.1:25551077-25551096 | MS.gene006767:intron | 10.0% |
!! | TAAATAAAAAAATACATGTA+GGG | + | chr4.1:25552033-25552052 | MS.gene006767:intron | 10.0% |
!! | AATAAACAATTTGAGAATAT+TGG | - | chr4.1:25551625-25551644 | None:intergenic | 15.0% |
!! | ACAAATTATATTGAAACAAA+AGG | - | chr4.1:25551876-25551895 | None:intergenic | 15.0% |
!! | ATTACATAACATATTGTTAT+TGG | - | chr4.1:25552131-25552150 | None:intergenic | 15.0% |
!! | CATGTAAAATTATAACAATT+GGG | + | chr4.1:25551024-25551043 | MS.gene006767:intron | 15.0% |
!! | CTAAATAAAAAAATACATGT+AGG | + | chr4.1:25552032-25552051 | MS.gene006767:intron | 15.0% |
!! | TTTAAAAACACAAATGAAAA+AGG | - | chr4.1:25551291-25551310 | None:intergenic | 15.0% |
!!! | AAGTTAAGGTAATTTTTTTA+TGG | + | chr4.1:25551245-25551264 | MS.gene006767:intron | 15.0% |
!!! | AATATAATTTGTGAATTTTC+TGG | + | chr4.1:25551884-25551903 | MS.gene006767:intron | 15.0% |
!! | AATTATATTGAAACAAAAGG+TGG | - | chr4.1:25551873-25551892 | None:intergenic | 20.0% |
!! | ATGCCATTATTATAAGTTAA+AGG | - | chr4.1:25551735-25551754 | None:intergenic | 20.0% |
!! | GCATGTAAAATTATAACAAT+TGG | + | chr4.1:25551023-25551042 | MS.gene006767:intron | 20.0% |
!! | TTTGTTCATAAAATATTTGC+AGG | + | chr4.1:25551108-25551127 | MS.gene006767:intron | 20.0% |
!!! | ATTAGTTTAGAAAATAAGCA+TGG | - | chr4.1:25552012-25552031 | None:intergenic | 20.0% |
!!! | TAAAATTGATGATACTTACA+AGG | - | chr4.1:25550970-25550989 | None:intergenic | 20.0% |
!!! | TGTAAGTATCATCAATTTTA+TGG | + | chr4.1:25550970-25550989 | MS.gene006767:intron | 20.0% |
! | AAACTAACATGTAGTTTCTT+TGG | - | chr4.1:25551543-25551562 | None:intergenic | 25.0% |
! | ATGCTAATTCTTCAAAGAAA+GGG | - | chr4.1:25551183-25551202 | None:intergenic | 25.0% |
! | CATAAAATATTTGCAGGTTA+TGG | + | chr4.1:25551114-25551133 | MS.gene006767:intron | 25.0% |
! | TTATAACAATTGGGTGATTA+TGG | + | chr4.1:25551033-25551052 | MS.gene006767:intron | 25.0% |
! | TTGTAGATGATATCAATATG+TGG | + | chr4.1:25551763-25551782 | MS.gene006767:intron | 25.0% |
!! | AAATTGACTCAAGAAAATCA+TGG | + | chr4.1:25550909-25550928 | MS.gene006767:CDS | 25.0% |
!! | AATTGACTCAAGAAAATCAT+GGG | + | chr4.1:25550910-25550929 | MS.gene006767:CDS | 25.0% |
!! | ACGCTTTCAATTTAAAATGT+CGG | - | chr4.1:25551352-25551371 | None:intergenic | 25.0% |
!! | ATGGAAGAAACTGTTTATTT+TGG | + | chr4.1:25551946-25551965 | MS.gene006767:intron | 25.0% |
!! | CTTTTATCATCATCCTTTTT+AGG | + | chr4.1:25551803-25551822 | MS.gene006767:intron | 25.0% |
!! | GAGCCTTTAACTTATAATAA+TGG | + | chr4.1:25551729-25551748 | MS.gene006767:intron | 25.0% |
!! | TTAACTAACTACCTTTTGTT+TGG | + | chr4.1:25552198-25552217 | MS.gene006767:intron | 25.0% |
!!! | AATTTTTTTATGGTCTATGG+AGG | + | chr4.1:25551255-25551274 | MS.gene006767:intron | 25.0% |
!!! | ATTTTTTTATGGTCTATGGA+GGG | + | chr4.1:25551256-25551275 | MS.gene006767:intron | 25.0% |
!!! | GGTAATTTTTTTATGGTCTA+TGG | + | chr4.1:25551252-25551271 | MS.gene006767:intron | 25.0% |
ATCCTGATGAAATTAGGAAA+AGG | + | chr4.1:25552340-25552359 | MS.gene006767:CDS | 30.0% | |
GATGCTAATTCTTCAAAGAA+AGG | - | chr4.1:25551184-25551203 | None:intergenic | 30.0% | |
TATGATATCTCCTTCTATGT+TGG | + | chr4.1:25551562-25551581 | MS.gene006767:intron | 30.0% | |
TCTCCACTCAACATAAAAAT+TGG | - | chr4.1:25551919-25551938 | None:intergenic | 30.0% | |
TGATGAAATTAGGAAAAGGA+TGG | + | chr4.1:25552344-25552363 | MS.gene006767:CDS | 30.0% | |
! | AAACTGAAAGTTTAGTTCGT+TGG | - | chr4.1:25551423-25551442 | None:intergenic | 30.0% |
! | ATCCTTTTCCTAATTTCATC+AGG | - | chr4.1:25552345-25552364 | None:intergenic | 30.0% |
! | ATGCCAATTTTTATGTTGAG+TGG | + | chr4.1:25551913-25551932 | MS.gene006767:intron | 30.0% |
! | CAGTTCAAAAAAGTACAGTT+CGG | + | chr4.1:25551483-25551502 | MS.gene006767:intron | 30.0% |
!! | TGGTTCATTTTTCTGCTTAT+TGG | + | chr4.1:25551134-25551153 | MS.gene006767:CDS | 30.0% |
!! | TTATCATCATCCTTTTTAGG+TGG | + | chr4.1:25551806-25551825 | MS.gene006767:intron | 30.0% |
!!! | TTTTTTTATGGTCTATGGAG+GGG | + | chr4.1:25551257-25551276 | MS.gene006767:intron | 30.0% |
AAAGGGTTCATAGCAATAGA+AGG | - | chr4.1:25551166-25551185 | None:intergenic | 35.0% | |
ACAACAATCATGCATCAAAG+AGG | - | chr4.1:25552154-25552173 | None:intergenic | 35.0% | |
ACTTACAAGGCAACCTTTAT+TGG | - | chr4.1:25550957-25550976 | None:intergenic | 35.0% | |
ATCACTGAAGCTACCAATAA+AGG | + | chr4.1:25550941-25550960 | MS.gene006767:CDS | 35.0% | |
ATCTCCTTCTATGTTGGAAA+TGG | + | chr4.1:25551568-25551587 | MS.gene006767:intron | 35.0% | |
CATAGAACAGTCCAAACAAA+AGG | - | chr4.1:25552212-25552231 | None:intergenic | 35.0% | |
GTGAACTAATTGTCACAGTT+CGG | + | chr4.1:25551443-25551462 | MS.gene006767:intron | 35.0% | |
GTGCAAATCCTGATGAAATT+AGG | + | chr4.1:25552334-25552353 | MS.gene006767:CDS | 35.0% | |
! | TGAGTCAATTTTCACAACCT+TGG | - | chr4.1:25550900-25550919 | None:intergenic | 35.0% |
! | TGCACGGATAATGGTATATA+TGG | - | chr4.1:25551326-25551345 | None:intergenic | 35.0% |
!! | TGCTTTTTGTGACTCTATCT+AGG | + | chr4.1:25552230-25552249 | MS.gene006767:intron | 35.0% |
!! | TTTAAAATGTCGGTGTTGCA+CGG | - | chr4.1:25551342-25551361 | None:intergenic | 35.0% |
!!! | AGTCTCTGACATGTTTTAGT+AGG | + | chr4.1:25551376-25551395 | MS.gene006767:intron | 35.0% |
!!! | ATCCTTTTTAGGTGGTTTCA+AGG | + | chr4.1:25551814-25551833 | MS.gene006767:intron | 35.0% |
!!! | TCCTTTTTAGGTGGTTTCAA+GGG | + | chr4.1:25551815-25551834 | MS.gene006767:intron | 35.0% |
AAAGAGGACATCTTGATAGG+TGG | - | chr4.1:25551206-25551225 | None:intergenic | 40.0% | |
AAGCATGCTATCACTAAGAC+TGG | + | chr4.1:25551702-25551721 | MS.gene006767:intron | 40.0% | |
ACAACAGCACAAAAAGTCCA+AGG | + | chr4.1:25550880-25550899 | MS.gene006767:CDS | 40.0% | |
ATAAACACAGCCCTCAAAGT+GGG | - | chr4.1:25551981-25552000 | None:intergenic | 40.0% | |
CAGAAAGAGGACATCTTGAT+AGG | - | chr4.1:25551209-25551228 | None:intergenic | 40.0% | |
CATCAACAAAAAGGTAGGCA+TGG | - | chr4.1:25552283-25552302 | None:intergenic | 40.0% | |
CCACTCATCAACAAAAAGGT+AGG | - | chr4.1:25552288-25552307 | None:intergenic | 40.0% | |
GGTGATTATGGTTTCAGCTT+CGG | + | chr4.1:25551045-25551064 | MS.gene006767:intron | 40.0% | |
TATAAACACAGCCCTCAAAG+TGG | - | chr4.1:25551982-25552001 | None:intergenic | 40.0% | |
TCAAGATGTCCTCTTTCTGA+AGG | + | chr4.1:25551210-25551229 | MS.gene006767:CDS | 40.0% | |
TCCCTTGAAACCACCTAAAA+AGG | - | chr4.1:25551819-25551838 | None:intergenic | 40.0% | |
TCCTCCACTCATCAACAAAA+AGG | - | chr4.1:25552292-25552311 | None:intergenic | 40.0% | |
TTGCATGTGCTGCAAATTAG+AGG | - | chr4.1:25551596-25551615 | None:intergenic | 40.0% | |
! | GTGATTTGGAGGAATGAGTT+TGG | - | chr4.1:25552383-25552402 | None:intergenic | 40.0% |
! | TACAGTTCGGTTTTCTGTGA+AGG | + | chr4.1:25551496-25551515 | MS.gene006767:intron | 40.0% |
! | TATTGGTAGCTTCAGTGATG+TGG | - | chr4.1:25550940-25550959 | None:intergenic | 40.0% |
! | TGCTATCACTAAGACTGGTT+TGG | + | chr4.1:25551707-25551726 | MS.gene006767:intron | 40.0% |
!! | ACCTTTTTGTTGATGAGTGG+AGG | + | chr4.1:25552288-25552307 | MS.gene006767:CDS | 40.0% |
!! | CATGGCATTGATTTCCAACT+TGG | - | chr4.1:25552265-25552284 | None:intergenic | 40.0% |
!! | CCTACCTTTTTGTTGATGAG+TGG | + | chr4.1:25552285-25552304 | MS.gene006767:CDS | 40.0% |
!! | CTGTGAAGGTAGTTCTGATT+CGG | + | chr4.1:25551510-25551529 | MS.gene006767:intron | 40.0% |
AATCCAGTGGAGAAAGCTGT+TGG | + | chr4.1:25552312-25552331 | MS.gene006767:CDS | 45.0% | |
AGTTCCTGTGACCTCAAAGT+GGG | - | chr4.1:25551662-25551681 | None:intergenic | 45.0% | |
GATTCCAAACCCCACTTTGA+GGG | + | chr4.1:25551649-25551668 | MS.gene006767:intron | 45.0% | |
GGCTCCATTTCCAACATAGA+AGG | - | chr4.1:25551575-25551594 | None:intergenic | 45.0% | |
GTTGAGTGGAGAGACTCTTA+TGG | + | chr4.1:25551927-25551946 | MS.gene006767:intron | 45.0% | |
TAAACACAGCCCTCAAAGTG+GGG | - | chr4.1:25551980-25551999 | None:intergenic | 45.0% | |
TGATTCCAAACCCCACTTTG+AGG | + | chr4.1:25551648-25551667 | MS.gene006767:intron | 45.0% | |
TTTATGGTCTATGGAGGGGA+AGG | + | chr4.1:25551261-25551280 | MS.gene006767:intron | 45.0% | |
! | AGATGTCCTCTTTCTGAAGG+TGG | + | chr4.1:25551213-25551232 | MS.gene006767:CDS | 45.0% |
!! | AGGTAGTTCTGATTCGGTTC+AGG | + | chr4.1:25551516-25551535 | MS.gene006767:intron | 45.0% |
!! | GGCATTGATTTCCAACTTGG+AGG | - | chr4.1:25552262-25552281 | None:intergenic | 45.0% |
!!! | TAAAAGATATTATTTTAATT+AGG | - | chr4.1:25551789-25551808 | None:intergenic | 5.0% |
CAGTTCCTGTGACCTCAAAG+TGG | - | chr4.1:25551663-25551682 | None:intergenic | 50.0% | |
CCACATCCACCTTCAGAAAG+AGG | - | chr4.1:25551222-25551241 | None:intergenic | 50.0% | |
CTAGGAAGTAGCCTCCAAGT+TGG | + | chr4.1:25552248-25552267 | MS.gene006767:intron | 50.0% | |
GATGAGTGGAGGAAATCCAG+TGG | + | chr4.1:25552299-25552318 | MS.gene006767:CDS | 50.0% | |
GGATTCCAAACCCCACTTTG+AGG | + | chr4.1:25551967-25551986 | MS.gene006767:intron | 50.0% | |
GGTGGATGTGGACGAAGTTA+AGG | + | chr4.1:25551231-25551250 | MS.gene006767:CDS | 50.0% | |
GTTCCTGTGACCTCAAAGTG+GGG | - | chr4.1:25551661-25551680 | None:intergenic | 50.0% | |
TGTGACCTCAAAGTGGGGTT+TGG | - | chr4.1:25551656-25551675 | None:intergenic | 50.0% | |
! | CCTCTTTCTGAAGGTGGATG+TGG | + | chr4.1:25551219-25551238 | MS.gene006767:CDS | 50.0% |
!! | AAACCCCACTTTGAGGTCAC+AGG | + | chr4.1:25551655-25551674 | MS.gene006767:intron | 50.0% |
!! | TGTCGGTGTTGCACGGATAA+TGG | - | chr4.1:25551335-25551354 | None:intergenic | 50.0% |
ACAGCCCTCAAAGTGGGGTT+TGG | - | chr4.1:25551975-25551994 | None:intergenic | 55.0% | |
GCACCAACAGCTTTCTCCAC+TGG | - | chr4.1:25552318-25552337 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 25550869 | 25552407 | 25550869 | ID=MS.gene006767 |
chr4.1 | mRNA | 25550869 | 25552407 | 25550869 | ID=MS.gene006767.t1;Parent=MS.gene006767 |
chr4.1 | exon | 25550869 | 25550970 | 25550869 | ID=MS.gene006767.t1.exon1;Parent=MS.gene006767.t1 |
chr4.1 | CDS | 25550869 | 25550970 | 25550869 | ID=cds.MS.gene006767.t1;Parent=MS.gene006767.t1 |
chr4.1 | exon | 25551130 | 25551252 | 25551130 | ID=MS.gene006767.t1.exon2;Parent=MS.gene006767.t1 |
chr4.1 | CDS | 25551130 | 25551252 | 25551130 | ID=cds.MS.gene006767.t1;Parent=MS.gene006767.t1 |
chr4.1 | exon | 25552252 | 25552407 | 25552252 | ID=MS.gene006767.t1.exon3;Parent=MS.gene006767.t1 |
chr4.1 | CDS | 25552252 | 25552407 | 25552252 | ID=cds.MS.gene006767.t1;Parent=MS.gene006767.t1 |
Gene Sequence |
Protein sequence |