Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007068.t1 | XP_013450273.1 | 98.4 | 437 | 6 | 1 | 1 | 436 | 45 | 481 | 3.70E-237 | 830.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007068.t1 | Q9FG14 | 45.9 | 462 | 200 | 11 | 16 | 434 | 64 | 518 | 9.2e-88 | 325.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007068.t1 | A0A072U4M5 | 98.4 | 437 | 6 | 1 | 1 | 436 | 45 | 481 | 2.6e-237 | 830.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007068 | MS.gene46447 | PPI |
| MS.gene007068 | MS.gene051902 | PPI |
| MS.gene57045 | MS.gene007068 | PPI |
| MS.gene007068 | MS.gene034642 | PPI |
| MS.gene007068 | MS.gene23060 | PPI |
| MS.gene007068 | MS.gene39222 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007068.t1 | MTR_7g107000 | 98.398 | 437 | 6 | 1 | 1 | 436 | 45 | 481 | 0.0 | 890 |
| MS.gene007068.t1 | MTR_1g054835 | 62.896 | 442 | 139 | 8 | 13 | 436 | 52 | 486 | 0.0 | 538 |
| MS.gene007068.t1 | MTR_4g130400 | 42.857 | 119 | 65 | 1 | 22 | 140 | 5 | 120 | 3.37e-19 | 90.1 |
| MS.gene007068.t1 | MTR_1g070350 | 45.545 | 101 | 54 | 1 | 20 | 119 | 526 | 626 | 3.44e-16 | 81.6 |
| MS.gene007068.t1 | MTR_5g078300 | 44.737 | 76 | 42 | 0 | 26 | 101 | 620 | 695 | 2.16e-12 | 69.7 |
| MS.gene007068.t1 | MTR_0168s0060 | 33.155 | 187 | 102 | 7 | 26 | 212 | 334 | 497 | 5.90e-11 | 64.7 |
| MS.gene007068.t1 | MTR_4g093150 | 32.692 | 104 | 70 | 0 | 22 | 125 | 72 | 175 | 6.68e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007068.t1 | AT5G06560 | 50.540 | 463 | 179 | 12 | 15 | 434 | 63 | 518 | 1.43e-138 | 407 |
| MS.gene007068.t1 | AT3G11850 | 43.913 | 460 | 207 | 9 | 16 | 434 | 55 | 504 | 1.69e-117 | 353 |
| MS.gene007068.t1 | AT3G11850 | 43.913 | 460 | 207 | 9 | 16 | 434 | 55 | 504 | 1.69e-117 | 353 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 15 | 386 | 7.62e-89 | 275 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 15 | 386 | 7.62e-89 | 275 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 15 | 386 | 7.62e-89 | 275 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 15 | 386 | 7.62e-89 | 275 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 63 | 434 | 9.49e-88 | 274 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 63 | 434 | 9.49e-88 | 274 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 63 | 434 | 9.49e-88 | 274 |
| MS.gene007068.t1 | AT3G54740 | 39.954 | 433 | 182 | 10 | 15 | 430 | 63 | 434 | 9.49e-88 | 274 |
| MS.gene007068.t1 | AT5G16720 | 43.966 | 116 | 59 | 1 | 10 | 125 | 350 | 459 | 2.18e-20 | 94.4 |
| MS.gene007068.t1 | AT4G30830 | 44.860 | 107 | 59 | 0 | 20 | 126 | 12 | 118 | 1.85e-19 | 89.7 |
| MS.gene007068.t1 | AT4G30830 | 44.860 | 107 | 59 | 0 | 20 | 126 | 12 | 118 | 1.85e-19 | 89.7 |
| MS.gene007068.t1 | AT5G57830 | 44.697 | 132 | 65 | 1 | 1 | 132 | 2 | 125 | 3.74e-19 | 89.4 |
| MS.gene007068.t1 | AT2G24140 | 43.519 | 108 | 61 | 0 | 21 | 128 | 14 | 121 | 2.01e-17 | 83.2 |
| MS.gene007068.t1 | AT2G24140 | 43.519 | 108 | 61 | 0 | 21 | 128 | 14 | 121 | 2.01e-17 | 83.2 |
| MS.gene007068.t1 | AT1G70750 | 44.000 | 100 | 56 | 0 | 26 | 125 | 416 | 515 | 3.96e-15 | 78.2 |
| MS.gene007068.t1 | AT4G13630 | 47.525 | 101 | 52 | 1 | 24 | 123 | 222 | 322 | 1.75e-14 | 75.9 |
| MS.gene007068.t1 | AT4G13630 | 47.525 | 101 | 52 | 1 | 24 | 123 | 222 | 322 | 1.75e-14 | 75.9 |
| MS.gene007068.t1 | AT2G30690 | 41.584 | 101 | 58 | 1 | 20 | 119 | 609 | 709 | 5.28e-14 | 74.7 |
| MS.gene007068.t1 | AT2G30690 | 41.584 | 101 | 58 | 1 | 20 | 119 | 609 | 709 | 5.28e-14 | 74.7 |
| MS.gene007068.t1 | AT1G04890 | 49.474 | 95 | 48 | 0 | 26 | 120 | 114 | 208 | 2.05e-13 | 72.0 |
| MS.gene007068.t1 | AT1G08800 | 37.391 | 115 | 72 | 0 | 5 | 119 | 872 | 986 | 4.08e-13 | 72.0 |
| MS.gene007068.t1 | AT1G08800 | 37.391 | 115 | 72 | 0 | 5 | 119 | 872 | 986 | 4.08e-13 | 72.0 |
| MS.gene007068.t1 | AT1G08800 | 37.391 | 115 | 72 | 0 | 5 | 119 | 872 | 986 | 4.08e-13 | 72.0 |
| MS.gene007068.t1 | AT1G08800 | 37.391 | 115 | 72 | 0 | 5 | 119 | 872 | 986 | 4.08e-13 | 72.0 |
| MS.gene007068.t1 | AT4G13160 | 47.368 | 95 | 50 | 0 | 26 | 120 | 117 | 211 | 8.64e-13 | 68.9 |
| MS.gene007068.t1 | AT1G74830 | 42.056 | 107 | 58 | 2 | 26 | 131 | 305 | 408 | 1.18e-12 | 70.1 |
| MS.gene007068.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 59 | 128 | 1 | 70 | 8.36e-12 | 65.9 |
| MS.gene007068.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 59 | 128 | 1 | 70 | 8.36e-12 | 65.9 |
Find 111 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCGTTTGAGGAATT+TGG | 0.149872 | 7.3:+6855119 | MS.gene007068:CDS |
| ATTATCTACCTTCTTAAAAT+TGG | 0.151355 | 7.3:-6855376 | None:intergenic |
| TAGAGGAGTTGTTGTATAAA+AGG | 0.190203 | 7.3:+6854875 | MS.gene007068:CDS |
| GGCGTTGTTCGCGTTGAAAT+TGG | 0.298444 | 7.3:+6854622 | MS.gene007068:CDS |
| CAAAACAAGCTGTGCTTTAT+CGG | 0.300589 | 7.3:-6855616 | None:intergenic |
| GTAACAACTCCTAGGGAGTT+TGG | 0.317502 | 7.3:+6855486 | MS.gene007068:CDS |
| GCGTTGTTCGCGTTGAAATT+GGG | 0.320768 | 7.3:+6854623 | MS.gene007068:CDS |
| TCAAGATTTGTGTTCTGAAT+TGG | 0.320822 | 7.3:+6854696 | MS.gene007068:CDS |
| TCCTAGGGAGTTTGGAAATC+AGG | 0.328062 | 7.3:+6855494 | MS.gene007068:CDS |
| AGGAAGAGGAATAATAATAA+TGG | 0.334301 | 7.3:+6855339 | MS.gene007068:CDS |
| TTCACTTACGTGTGAAGTTC+AGG | 0.346138 | 7.3:+6854912 | MS.gene007068:CDS |
| TCATGTGACTCGTCGTCGTT+TGG | 0.362096 | 7.3:+6855273 | MS.gene007068:CDS |
| AGGAATAATAATAATGGGTC+AGG | 0.364109 | 7.3:+6855345 | MS.gene007068:CDS |
| GATGTTGAGAAGTATGTGTT+TGG | 0.365629 | 7.3:+6855087 | MS.gene007068:CDS |
| ACATTAACTCTCTTCTGTTC+TGG | 0.372528 | 7.3:-6855675 | None:intergenic |
| TGTGACTGTAGGTATATGTT+TGG | 0.373845 | 7.3:+6856679 | MS.gene007068:intron |
| GGGTTGCATCGATTGTTTCC+TGG | 0.382694 | 7.3:+6855890 | MS.gene007068:CDS |
| ATATGTTTCAAGAATGCAAT+TGG | 0.391625 | 7.3:+6856768 | MS.gene007068:CDS |
| CATCCATCTGACTATAAGTT+GGG | 0.397922 | 7.3:-6855170 | None:intergenic |
| ATGTAAAGCTTCTTTACATA+AGG | 0.410091 | 7.3:-6855531 | None:intergenic |
| ATGTTGAGAAGTATGTGTTT+GGG | 0.413739 | 7.3:+6855088 | MS.gene007068:CDS |
| GGAAGAGGAATAATAATAAT+GGG | 0.420804 | 7.3:+6855340 | MS.gene007068:CDS |
| CAAGGCTCAATGGTAGCTTT+AGG | 0.421216 | 7.3:+6855319 | MS.gene007068:CDS |
| CTCGAATGTTTATTCGTACT+AGG | 0.424909 | 7.3:-6855243 | None:intergenic |
| AGAGGAGTTGTTGTATAAAA+GGG | 0.431002 | 7.3:+6854876 | MS.gene007068:CDS |
| ATGAATATGTAACAACTCCT+AGG | 0.433427 | 7.3:+6855478 | MS.gene007068:CDS |
| TTCAAGCACTTGAGGCGGAC+AGG | 0.436618 | 7.3:+6855559 | MS.gene007068:CDS |
| TTGATGACCTCTCTTTCTCC+AGG | 0.447921 | 7.3:-6855908 | None:intergenic |
| GTTATAGAGAAGGTGATAGT+TGG | 0.451471 | 7.3:+6855213 | MS.gene007068:CDS |
| AAGCATAGAATGCTGAGTTA+TGG | 0.453031 | 7.3:+6854940 | MS.gene007068:CDS |
| CCATCCATCTGACTATAAGT+TGG | 0.462484 | 7.3:-6855171 | None:intergenic |
| GGAGAATAGAATATCTCAAA+TGG | 0.476799 | 7.3:+6855140 | MS.gene007068:CDS |
| TTGACTGAGTCAGAGGTAGA+AGG | 0.478966 | 7.3:+6854964 | MS.gene007068:CDS |
| CGTTGTTCGCGTTGAAATTG+GGG | 0.481816 | 7.3:+6854624 | MS.gene007068:CDS |
| AAATTGAACGGTGGTGGTGA+TGG | 0.481967 | 7.3:+6854601 | MS.gene007068:CDS |
| AGTAAGCCAGTGTTGCTAGA+TGG | 0.483817 | 7.3:-6856706 | None:intergenic |
| AAATTCCTCAAACGATCCCT+TGG | 0.484142 | 7.3:-6855117 | None:intergenic |
| CTAGTACGAATAAACATTCG+AGG | 0.497895 | 7.3:+6855244 | MS.gene007068:CDS |
| TGCATTACATTACATTTCAA+AGG | 0.506111 | 7.3:-6855021 | None:intergenic |
| GTGACTGTAGGTATATGTTT+GGG | 0.510027 | 7.3:+6856680 | MS.gene007068:intron |
| CAACTTATAGTCAGATGGAT+GGG | 0.510170 | 7.3:+6855172 | MS.gene007068:CDS |
| TCTGAATTCAAAAGCGGACC+TGG | 0.510414 | 7.3:+6855447 | MS.gene007068:CDS |
| TTTGTGTTCTGAATTGGAAG+AGG | 0.512404 | 7.3:+6854702 | MS.gene007068:CDS |
| GTTAATGTGAGATCCTTTGT+TGG | 0.516782 | 7.3:+6855690 | MS.gene007068:CDS |
| TATGTTTCAAGAATGCAATT+GGG | 0.520875 | 7.3:+6856769 | MS.gene007068:CDS |
| GTAGATAATTTGTCCGAGGC+TGG | 0.522155 | 7.3:+6855390 | MS.gene007068:CDS |
| CTAAAGCTACCATTGAGCCT+TGG | 0.523326 | 7.3:-6855318 | None:intergenic |
| AAACTCCAAGGGATCGTTTG+AGG | 0.524729 | 7.3:+6855112 | MS.gene007068:CDS |
| AGATGGATGGGGATTTCAAT+GGG | 0.525949 | 7.3:+6855184 | MS.gene007068:CDS |
| CAGATGGATGGGGATTTCAA+TGG | 0.526604 | 7.3:+6855183 | MS.gene007068:CDS |
| GAAACACCATGAAATGGAAA+AGG | 0.526709 | 7.3:+6854573 | None:intergenic |
| TGAGAAGGCTGAGCTTGAGA+TGG | 0.528315 | 7.3:+6854786 | MS.gene007068:CDS |
| AATGTGAGATCCTTTGTTGG+CGG | 0.533294 | 7.3:+6855693 | MS.gene007068:CDS |
| GTGGGGAAATTGAACGGTGG+TGG | 0.533876 | 7.3:+6854595 | MS.gene007068:CDS |
| TTCAAAGGAGGATACTCATA+AGG | 0.534931 | 7.3:-6855006 | None:intergenic |
| GGAATAATAATAATGGGTCA+GGG | 0.535516 | 7.3:+6855346 | MS.gene007068:CDS |
| TTGACAAAGGACATCATGTA+AGG | 0.537139 | 7.3:+6856737 | MS.gene007068:CDS |
| GAATGTGAAGCCGCCAACAA+AGG | 0.544205 | 7.3:-6855703 | None:intergenic |
| GGAGAATCCGACACAAACTC+AGG | 0.544748 | 7.3:-6855297 | None:intergenic |
| TCGGATTCTCCAAGGCTCAA+TGG | 0.544952 | 7.3:+6855309 | MS.gene007068:CDS |
| CATGAGGCTTCAAGCACTTG+AGG | 0.547249 | 7.3:+6855551 | MS.gene007068:CDS |
| CCTAGGGAGTTTGGAAATCA+GGG | 0.549475 | 7.3:+6855495 | MS.gene007068:CDS |
| TCAATGGTAGCTTTAGGAAG+AGG | 0.551484 | 7.3:+6855325 | MS.gene007068:CDS |
| CGTCATATTATCACCAGCCT+CGG | 0.554657 | 7.3:-6855403 | None:intergenic |
| GGACAGGGAATCAATGAGGC+AGG | 0.555216 | 7.3:+6855575 | MS.gene007068:CDS |
| AACCCCAACTTATAGTCAGA+TGG | 0.560746 | 7.3:+6855167 | MS.gene007068:CDS |
| ATGTGTTTGGGGAAACTCCA+AGG | 0.561976 | 7.3:+6855100 | MS.gene007068:CDS |
| TCAAGCACTTGAGGCGGACA+GGG | 0.562181 | 7.3:+6855560 | MS.gene007068:CDS |
| GAGGACGTGTCATGACCAGC+AGG | 0.563649 | 7.3:+6854840 | MS.gene007068:CDS |
| AAGGACATCATGTAAGGTCG+TGG | 0.564376 | 7.3:+6856743 | MS.gene007068:CDS |
| ATGTGTGGCTTTACGTGAAG+CGG | 0.564878 | 7.3:+6854651 | MS.gene007068:CDS |
| CACCATGAAATGGAAAAGGT+GGG | 0.566484 | 7.3:+6854577 | None:intergenic |
| AGTTTGTGTCGGATTCTCCA+AGG | 0.567679 | 7.3:+6855301 | MS.gene007068:CDS |
| ACACCATGAAATGGAAAAGG+TGG | 0.568062 | 7.3:+6854576 | None:intergenic |
| GTTTGGCCCTGAGTTTGTGT+CGG | 0.571530 | 7.3:+6855290 | MS.gene007068:CDS |
| GTTCTGAATTGGAAGAGGAA+AGG | 0.572811 | 7.3:+6854707 | MS.gene007068:CDS |
| TGGGAAGAATGTTATAGAGA+AGG | 0.574569 | 7.3:+6855203 | MS.gene007068:CDS |
| CTAAAGCTAAAAGCTCCTGC+TGG | 0.583273 | 7.3:-6854855 | None:intergenic |
| TTACATGATGTCCTTTGTCA+AGG | 0.584012 | 7.3:-6856735 | None:intergenic |
| CCAACTTATAGTCAGATGGA+TGG | 0.584768 | 7.3:+6855171 | MS.gene007068:CDS |
| GGGCTACCATCTAGCAACAC+TGG | 0.588233 | 7.3:+6856700 | MS.gene007068:CDS |
| CCCTGATTTCCAAACTCCCT+AGG | 0.591505 | 7.3:-6855495 | None:intergenic |
| GAAAAGGTGGGGAAATTGAA+CGG | 0.592525 | 7.3:+6854589 | MS.gene007068:CDS |
| ATTACATTACATTTCAAAGG+AGG | 0.595172 | 7.3:-6855018 | None:intergenic |
| ATCCATCTGACTATAAGTTG+GGG | 0.600695 | 7.3:-6855169 | None:intergenic |
| AAAGGAGGATACTCATAAGG+TGG | 0.605904 | 7.3:-6855003 | None:intergenic |
| TGAATATGTAACAACTCCTA+GGG | 0.605927 | 7.3:+6855479 | MS.gene007068:CDS |
| AACTTATAGTCAGATGGATG+GGG | 0.607336 | 7.3:+6855173 | MS.gene007068:CDS |
| GAATAATAATAATGGGTCAG+GGG | 0.608186 | 7.3:+6855347 | MS.gene007068:CDS |
| AAGGAACGCTGCTTCGTCCG+CGG | 0.613406 | 7.3:+6854726 | MS.gene007068:CDS |
| ACCATGAAATGGAAAAGGTG+GGG | 0.614402 | 7.3:+6854578 | None:intergenic |
| ATTGACTCTGAATTCAAAAG+CGG | 0.615809 | 7.3:+6855441 | MS.gene007068:CDS |
| TGTTCGCGTTGAAATTGGGG+AGG | 0.616199 | 7.3:+6854627 | MS.gene007068:CDS |
| ATTGTTTCCTGGAGAAAGAG+AGG | 0.622679 | 7.3:+6855901 | MS.gene007068:CDS |
| TTATGGCTTGACTGAGTCAG+AGG | 0.625650 | 7.3:+6854957 | MS.gene007068:CDS |
| TTACTAATGCTCCTTGACAA+AGG | 0.626578 | 7.3:+6856724 | MS.gene007068:CDS |
| TGAAATTGGGGAGGAATGTG+TGG | 0.627744 | 7.3:+6854636 | MS.gene007068:CDS |
| ATGTAAAGAAGCTTTACATG+AGG | 0.629070 | 7.3:+6855535 | MS.gene007068:CDS |
| ATTGAGATTGCAGACTGAGA+AGG | 0.630429 | 7.3:+6854771 | MS.gene007068:CDS |
| CGAGGCTGGTGATAATATGA+CGG | 0.632376 | 7.3:+6855404 | MS.gene007068:CDS |
| TGTTGAGAAGTATGTGTTTG+GGG | 0.637549 | 7.3:+6855089 | MS.gene007068:CDS |
| GAAGGTAGATAATTTGTCCG+AGG | 0.640933 | 7.3:+6855386 | MS.gene007068:CDS |
| TGTGTTTGGGGAAACTCCAA+GGG | 0.642552 | 7.3:+6855101 | MS.gene007068:CDS |
| ACATATTCATCAAAAGCACC+AGG | 0.644085 | 7.3:-6855465 | None:intergenic |
| GAGAATCCGACACAAACTCA+GGG | 0.656277 | 7.3:-6855296 | None:intergenic |
| TAATGTAATGCATGTTTCTG+CGG | 0.660930 | 7.3:+6855032 | MS.gene007068:CDS |
| AGGCGGACAGGGAATCAATG+AGG | 0.683449 | 7.3:+6855571 | MS.gene007068:CDS |
| ACTGAGTCAGAGGTAGAAGG+TGG | 0.685416 | 7.3:+6854967 | MS.gene007068:CDS |
| GAGGCTTCAAGCACTTGAGG+CGG | 0.691923 | 7.3:+6855554 | MS.gene007068:CDS |
| TGACATTGTTTCATTCGCCG+CGG | 0.698217 | 7.3:-6854743 | None:intergenic |
| AAGGTGGGGAAATTGAACGG+TGG | 0.706112 | 7.3:+6854592 | MS.gene007068:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAACATGTATAATATCAT+AGG | - | chr7.3:6856179-6856198 | None:intergenic | 15.0% |
| !!! | ACTAATTTTTTAAGAGATTA+TGG | - | chr7.3:6856237-6856256 | None:intergenic | 15.0% |
| !!! | TAATGGATAATTAATTTCAA+GGG | + | chr7.3:6856280-6856299 | MS.gene007068:intron | 15.0% |
| !! | AATGGATAATTAATTTCAAG+GGG | + | chr7.3:6856281-6856300 | MS.gene007068:intron | 20.0% |
| !! | ATTATCTACCTTCTTAAAAT+TGG | - | chr7.3:6855379-6855398 | None:intergenic | 20.0% |
| !! | GAAATTAATTATCCATTACT+TGG | - | chr7.3:6856278-6856297 | None:intergenic | 20.0% |
| !!! | AAACTATTGTTTTCTTTCAA+TGG | - | chr7.3:6856066-6856085 | None:intergenic | 20.0% |
| !!! | AAATCTGTTATTGATTTTAG+TGG | + | chr7.3:6856308-6856327 | MS.gene007068:intron | 20.0% |
| !!! | GTAATGGATAATTAATTTCA+AGG | + | chr7.3:6856279-6856298 | MS.gene007068:intron | 20.0% |
| ! | AGGAAGAGGAATAATAATAA+TGG | + | chr7.3:6855339-6855358 | MS.gene007068:CDS | 25.0% |
| ! | ATAGAAAATGTTTGTTTGAG+AGG | - | chr7.3:6856448-6856467 | None:intergenic | 25.0% |
| ! | ATATGTTTCAAGAATGCAAT+TGG | + | chr7.3:6856768-6856787 | MS.gene007068:CDS | 25.0% |
| ! | ATCTAAGCATATCCTTATAT+TGG | + | chr7.3:6856422-6856441 | MS.gene007068:intron | 25.0% |
| ! | ATGATGCATTGAAATTTCAT+AGG | - | chr7.3:6856156-6856175 | None:intergenic | 25.0% |
| ! | ATGGATAATTAATTTCAAGG+GGG | + | chr7.3:6856282-6856301 | MS.gene007068:intron | 25.0% |
| ! | ATGTAAAGCTTCTTTACATA+AGG | - | chr7.3:6855534-6855553 | None:intergenic | 25.0% |
| ! | ATTACATTACATTTCAAAGG+AGG | - | chr7.3:6855021-6855040 | None:intergenic | 25.0% |
| ! | GGAAGAGGAATAATAATAAT+GGG | + | chr7.3:6855340-6855359 | MS.gene007068:CDS | 25.0% |
| ! | TAAGGTAATTTAATTGCAGA+TGG | + | chr7.3:6855737-6855756 | MS.gene007068:intron | 25.0% |
| ! | TATGTTTCAAGAATGCAATT+GGG | + | chr7.3:6856769-6856788 | MS.gene007068:CDS | 25.0% |
| ! | TGCATTACATTACATTTCAA+AGG | - | chr7.3:6855024-6855043 | None:intergenic | 25.0% |
| !! | AGTCTTTGTTTCAAAATGTA+TGG | + | chr7.3:6855955-6855974 | MS.gene007068:intron | 25.0% |
| !! | TGAAACAGAATAAGTATTGT+TGG | - | chr7.3:6855851-6855870 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTCAATGGTTTA+TGG | - | chr7.3:6856059-6856078 | None:intergenic | 25.0% |
| !!! | ACAATTTAAACGTTTTGTTG+AGG | + | chr7.3:6854816-6854835 | MS.gene007068:CDS | 25.0% |
| !!! | TATTGATTTTAGTGGAGAAA+TGG | + | chr7.3:6856316-6856335 | MS.gene007068:intron | 25.0% |
| AGAGGAGTTGTTGTATAAAA+GGG | + | chr7.3:6854876-6854895 | MS.gene007068:CDS | 30.0% | |
| ATGAATATGTAACAACTCCT+AGG | + | chr7.3:6855478-6855497 | MS.gene007068:CDS | 30.0% | |
| ATGTAAAGAAGCTTTACATG+AGG | + | chr7.3:6855535-6855554 | MS.gene007068:CDS | 30.0% | |
| CAGGCAATCTATATTTCTTA+AGG | + | chr7.3:6856119-6856138 | MS.gene007068:intron | 30.0% | |
| CTTAAGAAATATAGATTGCC+TGG | - | chr7.3:6856121-6856140 | None:intergenic | 30.0% | |
| GGAGAATAGAATATCTCAAA+TGG | + | chr7.3:6855140-6855159 | MS.gene007068:CDS | 30.0% | |
| TAGAGGAGTTGTTGTATAAA+AGG | + | chr7.3:6854875-6854894 | MS.gene007068:CDS | 30.0% | |
| TGAATATGTAACAACTCCTA+GGG | + | chr7.3:6855479-6855498 | MS.gene007068:CDS | 30.0% | |
| TTGTATCTAGCAACTATGAT+AGG | + | chr7.3:6856487-6856506 | MS.gene007068:intron | 30.0% | |
| TTTCCTATAGTGAGTTTAGA+GGG | + | chr7.3:6856572-6856591 | MS.gene007068:intron | 30.0% | |
| ! | ATCTTTCTTTTGTGTACAGT+GGG | + | chr7.3:6855870-6855889 | MS.gene007068:intron | 30.0% |
| ! | ATGTTGAGAAGTATGTGTTT+GGG | + | chr7.3:6855088-6855107 | MS.gene007068:CDS | 30.0% |
| ! | ATTGACTCTGAATTCAAAAG+CGG | + | chr7.3:6855441-6855460 | MS.gene007068:CDS | 30.0% |
| ! | CACATTCTTCACAGTTTTTA+AGG | + | chr7.3:6855719-6855738 | MS.gene007068:CDS | 30.0% |
| ! | GAAATGGTGATTACTGATTA+AGG | + | chr7.3:6856332-6856351 | MS.gene007068:intron | 30.0% |
| ! | TAATGTAATGCATGTTTCTG+CGG | + | chr7.3:6855032-6855051 | MS.gene007068:CDS | 30.0% |
| ! | TCAAGATTTGTGTTCTGAAT+TGG | + | chr7.3:6854696-6854715 | MS.gene007068:CDS | 30.0% |
| ! | TTTTCCTATAGTGAGTTTAG+AGG | + | chr7.3:6856571-6856590 | MS.gene007068:intron | 30.0% |
| !! | AGGAATAATAATAATGGGTC+AGG | + | chr7.3:6855345-6855364 | MS.gene007068:CDS | 30.0% |
| !! | GAATAATAATAATGGGTCAG+GGG | + | chr7.3:6855347-6855366 | MS.gene007068:CDS | 30.0% |
| !! | GGAATAATAATAATGGGTCA+GGG | + | chr7.3:6855346-6855365 | MS.gene007068:CDS | 30.0% |
| !! | GGATTTCTCCAATTTTAAGA+AGG | + | chr7.3:6855368-6855387 | MS.gene007068:CDS | 30.0% |
| !! | TTTTACTGATAATGCATACC+AGG | + | chr7.3:6856100-6856119 | MS.gene007068:intron | 30.0% |
| AACTTATAGTCAGATGGATG+GGG | + | chr7.3:6855173-6855192 | MS.gene007068:CDS | 35.0% | |
| AAGCATAGAATGCTGAGTTA+TGG | + | chr7.3:6854940-6854959 | MS.gene007068:CDS | 35.0% | |
| AATCATCTCAATCGAACCTT+GGG | - | chr7.3:6855805-6855824 | None:intergenic | 35.0% | |
| AATTTAATTGCAGATGGTGC+AGG | + | chr7.3:6855743-6855762 | MS.gene007068:intron | 35.0% | |
| ACATTAACTCTCTTCTGTTC+TGG | - | chr7.3:6855678-6855697 | None:intergenic | 35.0% | |
| ACTACTTATCATACTAGGTG+AGG | - | chr7.3:6855982-6856001 | None:intergenic | 35.0% | |
| AGCTGACTACTTATCATACT+AGG | - | chr7.3:6855987-6856006 | None:intergenic | 35.0% | |
| ATCCATCTGACTATAAGTTG+GGG | - | chr7.3:6855172-6855191 | None:intergenic | 35.0% | |
| CAAAACAAGCTGTGCTTTAT+CGG | - | chr7.3:6855619-6855638 | None:intergenic | 35.0% | |
| CAAATCAAGTAAGTAGTCAG+TGG | + | chr7.3:6855928-6855947 | MS.gene007068:intron | 35.0% | |
| CAACTTATAGTCAGATGGAT+GGG | + | chr7.3:6855172-6855191 | MS.gene007068:CDS | 35.0% | |
| CATCCATCTGACTATAAGTT+GGG | - | chr7.3:6855173-6855192 | None:intergenic | 35.0% | |
| CTAGTACGAATAAACATTCG+AGG | + | chr7.3:6855244-6855263 | MS.gene007068:CDS | 35.0% | |
| CTCGAATGTTTATTCGTACT+AGG | - | chr7.3:6855246-6855265 | None:intergenic | 35.0% | |
| GAATACTGACACAGTTTCTA+TGG | + | chr7.3:6856364-6856383 | MS.gene007068:intron | 35.0% | |
| GTGACTGTAGGTATATGTTT+GGG | + | chr7.3:6856680-6856699 | MS.gene007068:intron | 35.0% | |
| GTTAATGTGAGATCCTTTGT+TGG | + | chr7.3:6855690-6855709 | MS.gene007068:CDS | 35.0% | |
| GTTATAGAGAAGGTGATAGT+TGG | + | chr7.3:6855213-6855232 | MS.gene007068:CDS | 35.0% | |
| TGGGAAGAATGTTATAGAGA+AGG | + | chr7.3:6855203-6855222 | MS.gene007068:CDS | 35.0% | |
| TGTGACTGTAGGTATATGTT+TGG | + | chr7.3:6856679-6856698 | MS.gene007068:intron | 35.0% | |
| TTACATGATGTCCTTTGTCA+AGG | - | chr7.3:6856738-6856757 | None:intergenic | 35.0% | |
| TTACTAATGCTCCTTGACAA+AGG | + | chr7.3:6856724-6856743 | MS.gene007068:CDS | 35.0% | |
| TTCAAAGGAGGATACTCATA+AGG | - | chr7.3:6855009-6855028 | None:intergenic | 35.0% | |
| TTGACAAAGGACATCATGTA+AGG | + | chr7.3:6856737-6856756 | MS.gene007068:CDS | 35.0% | |
| TTGTTTGAGAGGCCAATATA+AGG | - | chr7.3:6856437-6856456 | None:intergenic | 35.0% | |
| ! | AGTTTCTATGGAATGCCTTT+TGG | + | chr7.3:6856376-6856395 | MS.gene007068:intron | 35.0% |
| ! | CATCTTTCTTTTGTGTACAG+TGG | + | chr7.3:6855869-6855888 | MS.gene007068:intron | 35.0% |
| ! | GATGTTGAGAAGTATGTGTT+TGG | + | chr7.3:6855087-6855106 | MS.gene007068:CDS | 35.0% |
| ! | TGTTGAGAAGTATGTGTTTG+GGG | + | chr7.3:6855089-6855108 | MS.gene007068:CDS | 35.0% |
| ! | TTTGTGTTCTGAATTGGAAG+AGG | + | chr7.3:6854702-6854721 | MS.gene007068:CDS | 35.0% |
| !! | ACATATTCATCAAAAGCACC+AGG | - | chr7.3:6855468-6855487 | None:intergenic | 35.0% |
| !! | TTAAACGTTTTGTTGAGGAG+AGG | + | chr7.3:6854821-6854840 | MS.gene007068:CDS | 35.0% |
| AAAGGAGGATACTCATAAGG+TGG | - | chr7.3:6855006-6855025 | None:intergenic | 40.0% | |
| AAATTCCTCAAACGATCCCT+TGG | - | chr7.3:6855120-6855139 | None:intergenic | 40.0% | |
| AACCCCAACTTATAGTCAGA+TGG | + | chr7.3:6855167-6855186 | MS.gene007068:CDS | 40.0% | |
| AAGGGATCGTTTGAGGAATT+TGG | + | chr7.3:6855119-6855138 | MS.gene007068:CDS | 40.0% | |
| AATGTGAGATCCTTTGTTGG+CGG | + | chr7.3:6855693-6855712 | MS.gene007068:CDS | 40.0% | |
| AGATGGATGGGGATTTCAAT+GGG | + | chr7.3:6855184-6855203 | MS.gene007068:CDS | 40.0% | |
| ATTGAGATTGCAGACTGAGA+AGG | + | chr7.3:6854771-6854790 | MS.gene007068:CDS | 40.0% | |
| ATTGTTTCCTGGAGAAAGAG+AGG | + | chr7.3:6855901-6855920 | MS.gene007068:CDS | 40.0% | |
| CAATCATCTCAATCGAACCT+TGG | - | chr7.3:6855806-6855825 | None:intergenic | 40.0% | |
| CCAACTTATAGTCAGATGGA+TGG | + | chr7.3:6855171-6855190 | MS.gene007068:CDS | 40.0% | |
| CCATCCATCTGACTATAAGT+TGG | - | chr7.3:6855174-6855193 | None:intergenic | 40.0% | |
| GAAAAGGTGGGGAAATTGAA+CGG | + | chr7.3:6854589-6854608 | MS.gene007068:CDS | 40.0% | |
| GTACCCTCTAAACTCACTAT+AGG | - | chr7.3:6856578-6856597 | None:intergenic | 40.0% | |
| TACACGTTAGTCAGTCCAAA+AGG | - | chr7.3:6856394-6856413 | None:intergenic | 40.0% | |
| TCTGAACTCATTGTGACTGT+AGG | + | chr7.3:6856668-6856687 | MS.gene007068:intron | 40.0% | |
| TTCACTTACGTGTGAAGTTC+AGG | + | chr7.3:6854912-6854931 | MS.gene007068:CDS | 40.0% | |
| TTTGCAGCAATGCCAAGTAA+TGG | + | chr7.3:6856263-6856282 | MS.gene007068:intron | 40.0% | |
| ! | GAAGGTAGATAATTTGTCCG+AGG | + | chr7.3:6855386-6855405 | MS.gene007068:CDS | 40.0% |
| ! | GTTCTGAATTGGAAGAGGAA+AGG | + | chr7.3:6854707-6854726 | MS.gene007068:CDS | 40.0% |
| !! | TCAATGGTAGCTTTAGGAAG+AGG | + | chr7.3:6855325-6855344 | MS.gene007068:CDS | 40.0% |
| !!! | GCTTGCTCTCTTTTTTTCAC+AGG | - | chr7.3:6856618-6856637 | None:intergenic | 40.0% |
| AAACTCCAAGGGATCGTTTG+AGG | + | chr7.3:6855112-6855131 | MS.gene007068:CDS | 45.0% | |
| AAGGACATCATGTAAGGTCG+TGG | + | chr7.3:6856743-6856762 | MS.gene007068:CDS | 45.0% | |
| AGTTTGTGTCGGATTCTCCA+AGG | + | chr7.3:6855301-6855320 | MS.gene007068:CDS | 45.0% | |
| ATGTGTTTGGGGAAACTCCA+AGG | + | chr7.3:6855100-6855119 | MS.gene007068:CDS | 45.0% | |
| CAAGGCTCAATGGTAGCTTT+AGG | + | chr7.3:6855319-6855338 | MS.gene007068:CDS | 45.0% | |
| CAGATGGATGGGGATTTCAA+TGG | + | chr7.3:6855183-6855202 | MS.gene007068:CDS | 45.0% | |
| CCTAGGGAGTTTGGAAATCA+GGG | + | chr7.3:6855495-6855514 | MS.gene007068:CDS | 45.0% | |
| CGAACCTTGGGCTGAAAAAT+GGG | - | chr7.3:6855793-6855812 | None:intergenic | 45.0% | |
| CGAGGCTGGTGATAATATGA+CGG | + | chr7.3:6855404-6855423 | MS.gene007068:CDS | 45.0% | |
| CGTCATATTATCACCAGCCT+CGG | - | chr7.3:6855406-6855425 | None:intergenic | 45.0% | |
| CGTTGTTCGCGTTGAAATTG+GGG | + | chr7.3:6854624-6854643 | MS.gene007068:CDS | 45.0% | |
| CTAAAGCTAAAAGCTCCTGC+TGG | - | chr7.3:6854858-6854877 | None:intergenic | 45.0% | |
| CTAAAGCTACCATTGAGCCT+TGG | - | chr7.3:6855321-6855340 | None:intergenic | 45.0% | |
| GAGAATCCGACACAAACTCA+GGG | - | chr7.3:6855299-6855318 | None:intergenic | 45.0% | |
| GCGTTGTTCGCGTTGAAATT+GGG | + | chr7.3:6854623-6854642 | MS.gene007068:CDS | 45.0% | |
| GGACTGACTAACGTGTACAA+TGG | + | chr7.3:6856397-6856416 | MS.gene007068:intron | 45.0% | |
| GTAACAACTCCTAGGGAGTT+TGG | + | chr7.3:6855486-6855505 | MS.gene007068:CDS | 45.0% | |
| TCCTAGGGAGTTTGGAAATC+AGG | + | chr7.3:6855494-6855513 | MS.gene007068:CDS | 45.0% | |
| TCGAACCTTGGGCTGAAAAA+TGG | - | chr7.3:6855794-6855813 | None:intergenic | 45.0% | |
| TCTGAATTCAAAAGCGGACC+TGG | + | chr7.3:6855447-6855466 | MS.gene007068:CDS | 45.0% | |
| TGAAATTGGGGAGGAATGTG+TGG | + | chr7.3:6854636-6854655 | MS.gene007068:CDS | 45.0% | |
| TGACATTGTTTCATTCGCCG+CGG | - | chr7.3:6854746-6854765 | None:intergenic | 45.0% | |
| TGTGTTTGGGGAAACTCCAA+GGG | + | chr7.3:6855101-6855120 | MS.gene007068:CDS | 45.0% | |
| TTATGGCTTGACTGAGTCAG+AGG | + | chr7.3:6854957-6854976 | MS.gene007068:CDS | 45.0% | |
| TTGACTGAGTCAGAGGTAGA+AGG | + | chr7.3:6854964-6854983 | MS.gene007068:CDS | 45.0% | |
| ! | AAATTGAACGGTGGTGGTGA+TGG | + | chr7.3:6854601-6854620 | MS.gene007068:CDS | 45.0% |
| ! | AGTAAGCCAGTGTTGCTAGA+TGG | - | chr7.3:6856709-6856728 | None:intergenic | 45.0% |
| ! | ATGTGTGGCTTTACGTGAAG+CGG | + | chr7.3:6854651-6854670 | MS.gene007068:CDS | 45.0% |
| ! | GTAGATAATTTGTCCGAGGC+TGG | + | chr7.3:6855390-6855409 | MS.gene007068:CDS | 45.0% |
| ! | TTGATGACCTCTCTTTCTCC+AGG | - | chr7.3:6855911-6855930 | None:intergenic | 45.0% |
| !! | TTTGCCCATTTTTCAGCCCA+AGG | + | chr7.3:6855786-6855805 | MS.gene007068:intron | 45.0% |
| !!! | AGCACAGCTTGTTTTGCTCA+AGG | + | chr7.3:6855623-6855642 | MS.gene007068:CDS | 45.0% |
| !!! | GCAGGAGCTTTTAGCTTTAG+AGG | + | chr7.3:6854858-6854877 | MS.gene007068:CDS | 45.0% |
| AAGGTGGGGAAATTGAACGG+TGG | + | chr7.3:6854592-6854611 | MS.gene007068:CDS | 50.0% | |
| ACTGAGTCAGAGGTAGAAGG+TGG | + | chr7.3:6854967-6854986 | MS.gene007068:CDS | 50.0% | |
| CATGAGGCTTCAAGCACTTG+AGG | + | chr7.3:6855551-6855570 | MS.gene007068:CDS | 50.0% | |
| CCCTGATTTCCAAACTCCCT+AGG | - | chr7.3:6855498-6855517 | None:intergenic | 50.0% | |
| GAATGTGAAGCCGCCAACAA+AGG | - | chr7.3:6855706-6855725 | None:intergenic | 50.0% | |
| GGAGAATCCGACACAAACTC+AGG | - | chr7.3:6855300-6855319 | None:intergenic | 50.0% | |
| GGCGTTGTTCGCGTTGAAAT+TGG | + | chr7.3:6854622-6854641 | MS.gene007068:CDS | 50.0% | |
| GTTTGGCCCTGAGTTTGTGT+CGG | + | chr7.3:6855290-6855309 | MS.gene007068:CDS | 50.0% | |
| TCATGTGACTCGTCGTCGTT+TGG | + | chr7.3:6855273-6855292 | MS.gene007068:CDS | 50.0% | |
| TCGGATTCTCCAAGGCTCAA+TGG | + | chr7.3:6855309-6855328 | MS.gene007068:CDS | 50.0% | |
| TGAGAAGGCTGAGCTTGAGA+TGG | + | chr7.3:6854786-6854805 | MS.gene007068:CDS | 50.0% | |
| TGTTCGCGTTGAAATTGGGG+AGG | + | chr7.3:6854627-6854646 | MS.gene007068:CDS | 50.0% | |
| !! | GGGTTGCATCGATTGTTTCC+TGG | + | chr7.3:6855890-6855909 | MS.gene007068:CDS | 50.0% |
| AGGCGGACAGGGAATCAATG+AGG | + | chr7.3:6855571-6855590 | MS.gene007068:CDS | 55.0% | |
| GAGGCTTCAAGCACTTGAGG+CGG | + | chr7.3:6855554-6855573 | MS.gene007068:CDS | 55.0% | |
| GGACAGGGAATCAATGAGGC+AGG | + | chr7.3:6855575-6855594 | MS.gene007068:CDS | 55.0% | |
| GGGCTACCATCTAGCAACAC+TGG | + | chr7.3:6856700-6856719 | MS.gene007068:CDS | 55.0% | |
| GTGGGGAAATTGAACGGTGG+TGG | + | chr7.3:6854595-6854614 | MS.gene007068:CDS | 55.0% | |
| TCAAGCACTTGAGGCGGACA+GGG | + | chr7.3:6855560-6855579 | MS.gene007068:CDS | 55.0% | |
| TTCAAGCACTTGAGGCGGAC+AGG | + | chr7.3:6855559-6855578 | MS.gene007068:CDS | 55.0% | |
| AAGGAACGCTGCTTCGTCCG+CGG | + | chr7.3:6854726-6854745 | MS.gene007068:CDS | 60.0% | |
| GAGGACGTGTCATGACCAGC+AGG | + | chr7.3:6854840-6854859 | MS.gene007068:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6854586 | 6856798 | 6854586 | ID=MS.gene007068 |
| chr7.3 | mRNA | 6854586 | 6856798 | 6854586 | ID=MS.gene007068.t1;Parent=MS.gene007068 |
| chr7.3 | exon | 6854586 | 6855740 | 6854586 | ID=MS.gene007068.t1.exon1;Parent=MS.gene007068.t1 |
| chr7.3 | CDS | 6854586 | 6855740 | 6854586 | ID=cds.MS.gene007068.t1;Parent=MS.gene007068.t1 |
| chr7.3 | exon | 6855889 | 6855935 | 6855889 | ID=MS.gene007068.t1.exon2;Parent=MS.gene007068.t1 |
| chr7.3 | CDS | 6855889 | 6855935 | 6855889 | ID=cds.MS.gene007068.t1;Parent=MS.gene007068.t1 |
| chr7.3 | exon | 6856690 | 6856798 | 6856690 | ID=MS.gene007068.t1.exon3;Parent=MS.gene007068.t1 |
| chr7.3 | CDS | 6856690 | 6856798 | 6856690 | ID=cds.MS.gene007068.t1;Parent=MS.gene007068.t1 |
| Gene Sequence |
| Protein sequence |
