Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57045.t1 | XP_013467758.1 | 96.4 | 444 | 10 | 2 | 1 | 444 | 1 | 438 | 1.70E-238 | 835.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57045.t1 | Q9FG14 | 47.4 | 479 | 210 | 13 | 1 | 444 | 1 | 472 | 2.5e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57045.t1 | A0A072VUM2 | 96.4 | 444 | 10 | 2 | 1 | 444 | 1 | 438 | 1.2e-238 | 835.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57045 | MS.gene007068 | PPI |
| MS.gene57045 | MS.gene46447 | PPI |
| MS.gene57045 | MS.gene051902 | PPI |
| MS.gene57045 | MS.gene39222 | PPI |
| MS.gene57045 | MS.gene034642 | PPI |
| MS.gene57045 | MS.gene23060 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57045.t1 | MTR_1g054835 | 96.396 | 444 | 10 | 2 | 1 | 444 | 1 | 438 | 0.0 | 889 |
| MS.gene57045.t1 | MTR_7g107000 | 60.998 | 441 | 142 | 10 | 14 | 442 | 16 | 438 | 6.58e-169 | 486 |
| MS.gene57045.t1 | MTR_1g070350 | 46.789 | 109 | 56 | 1 | 57 | 163 | 522 | 630 | 1.43e-19 | 92.8 |
| MS.gene57045.t1 | MTR_4g130400 | 45.283 | 106 | 58 | 0 | 61 | 166 | 4 | 109 | 2.16e-17 | 85.1 |
| MS.gene57045.t1 | MTR_4g093150 | 35.484 | 124 | 77 | 1 | 42 | 165 | 55 | 175 | 4.05e-14 | 72.0 |
| MS.gene57045.t1 | MTR_5g078300 | 46.053 | 76 | 41 | 0 | 66 | 141 | 620 | 695 | 1.86e-12 | 70.5 |
| MS.gene57045.t1 | MTR_0168s0060 | 35.099 | 151 | 84 | 3 | 42 | 180 | 310 | 458 | 3.62e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57045.t1 | AT5G06560 | 52.174 | 483 | 181 | 16 | 1 | 444 | 1 | 472 | 3.49e-143 | 422 |
| MS.gene57045.t1 | AT3G11850 | 43.177 | 447 | 210 | 12 | 32 | 444 | 22 | 458 | 2.56e-102 | 316 |
| MS.gene57045.t1 | AT3G11850 | 43.177 | 447 | 210 | 12 | 32 | 444 | 22 | 458 | 2.56e-102 | 316 |
| MS.gene57045.t1 | AT3G54740 | 40.213 | 470 | 177 | 12 | 1 | 444 | 1 | 392 | 1.85e-86 | 273 |
| MS.gene57045.t1 | AT3G54740 | 40.213 | 470 | 177 | 12 | 1 | 444 | 1 | 392 | 1.85e-86 | 273 |
| MS.gene57045.t1 | AT3G54740 | 40.213 | 470 | 177 | 12 | 1 | 444 | 1 | 392 | 1.85e-86 | 273 |
| MS.gene57045.t1 | AT3G54740 | 40.213 | 470 | 177 | 12 | 1 | 444 | 1 | 392 | 1.85e-86 | 273 |
| MS.gene57045.t1 | AT3G54740 | 40.441 | 408 | 147 | 11 | 55 | 444 | 15 | 344 | 4.20e-76 | 245 |
| MS.gene57045.t1 | AT3G54740 | 40.441 | 408 | 147 | 11 | 55 | 444 | 15 | 344 | 4.20e-76 | 245 |
| MS.gene57045.t1 | AT3G54740 | 40.441 | 408 | 147 | 11 | 55 | 444 | 15 | 344 | 4.20e-76 | 245 |
| MS.gene57045.t1 | AT3G54740 | 40.441 | 408 | 147 | 11 | 55 | 444 | 15 | 344 | 4.20e-76 | 245 |
| MS.gene57045.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 4.67e-20 | 91.7 |
| MS.gene57045.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 4.67e-20 | 91.7 |
| MS.gene57045.t1 | AT4G30830 | 45.098 | 102 | 56 | 0 | 66 | 167 | 18 | 119 | 6.15e-20 | 92.0 |
| MS.gene57045.t1 | AT4G30830 | 45.098 | 102 | 56 | 0 | 66 | 167 | 18 | 119 | 6.15e-20 | 92.0 |
| MS.gene57045.t1 | AT5G16720 | 40.833 | 120 | 71 | 0 | 46 | 165 | 340 | 459 | 1.97e-18 | 89.0 |
| MS.gene57045.t1 | AT5G57830 | 47.321 | 112 | 59 | 0 | 66 | 177 | 19 | 130 | 5.20e-18 | 86.3 |
| MS.gene57045.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 6.50e-17 | 84.3 |
| MS.gene57045.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 6.50e-17 | 84.3 |
| MS.gene57045.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.32e-15 | 80.5 |
| MS.gene57045.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.32e-15 | 80.5 |
| MS.gene57045.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.32e-15 | 80.5 |
| MS.gene57045.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.32e-15 | 80.5 |
| MS.gene57045.t1 | AT1G74830 | 41.739 | 115 | 64 | 1 | 59 | 173 | 301 | 412 | 9.91e-15 | 77.0 |
| MS.gene57045.t1 | AT1G70750 | 44.444 | 90 | 50 | 0 | 73 | 162 | 423 | 512 | 8.30e-14 | 74.7 |
| MS.gene57045.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 2.03e-13 | 70.9 |
| MS.gene57045.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 2.03e-13 | 70.9 |
| MS.gene57045.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 4.66e-12 | 68.9 |
| MS.gene57045.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 4.66e-12 | 68.9 |
| MS.gene57045.t1 | AT1G04890 | 41.346 | 104 | 47 | 1 | 71 | 160 | 105 | 208 | 8.78e-12 | 67.4 |
| MS.gene57045.t1 | AT1G18990 | 44.792 | 96 | 53 | 0 | 66 | 161 | 304 | 399 | 1.04e-11 | 67.8 |
Find 122 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATACTTGTTATTGTTCT+TGG | 0.136537 | 1.4:-45641161 | None:intergenic |
| CTCGCGTGGCTTGTCAAATT+TGG | 0.173314 | 1.4:-45641064 | None:intergenic |
| ACAATTGACTCTGTTCATTC+TGG | 0.200824 | 1.4:+45641274 | MS.gene57045:CDS |
| CAATCTGCCAATTCTGTTAT+TGG | 0.229733 | 1.4:-45643793 | None:intergenic |
| TGTATGGCATTGGCTGGAAT+TGG | 0.265318 | 1.4:-45643866 | None:intergenic |
| GAAGCACGATGAGTTTAAAT+TGG | 0.276035 | 1.4:+45640409 | MS.gene57045:CDS |
| AAACACAGGATGATGAGTTT+TGG | 0.300857 | 1.4:+45640770 | MS.gene57045:CDS |
| AATCTGCCAATTCTGTTATT+GGG | 0.303016 | 1.4:-45643792 | None:intergenic |
| GCACCGGATAATGGCTTTAC+AGG | 0.308345 | 1.4:+45641298 | MS.gene57045:CDS |
| TCAGGAGGAACTTATGTCTT+TGG | 0.312375 | 1.4:+45640685 | MS.gene57045:CDS |
| TGATGATTCCCTGATTCCTT+TGG | 0.314429 | 1.4:-45641358 | None:intergenic |
| TTATACTTGTTATTGTTCTT+GGG | 0.322493 | 1.4:-45641160 | None:intergenic |
| GTCGCTTACGTGTGAAGTTC+AGG | 0.334893 | 1.4:+45640742 | MS.gene57045:CDS |
| AAATGTAATGTCATGTATAA+TGG | 0.343360 | 1.4:+45640860 | MS.gene57045:CDS |
| AAAAGATGCCTTTAATGAAC+TGG | 0.344044 | 1.4:+45643733 | MS.gene57045:intron |
| GTATGGCATTGGCTGGAATT+GGG | 0.351133 | 1.4:-45643865 | None:intergenic |
| CATTCTGGGGCACCGGATAA+TGG | 0.354097 | 1.4:+45641289 | MS.gene57045:CDS |
| TATGCAGCAGAGAACGATTC+AGG | 0.369549 | 1.4:+45640508 | MS.gene57045:CDS |
| GAAGCTTTACATGAGGCTTC+AGG | 0.375689 | 1.4:+45641408 | MS.gene57045:CDS |
| TCCTCTGACTCAGCAACGTT+CGG | 0.376250 | 1.4:+45641094 | MS.gene57045:CDS |
| GCAACCAGTCCAAAGGAATC+AGG | 0.378139 | 1.4:+45641349 | MS.gene57045:CDS |
| AAGCTCCTCAAACGGTCATT+AGG | 0.378165 | 1.4:-45640938 | None:intergenic |
| GACAAGTACCGAGATCTTGC+AGG | 0.390060 | 1.4:-45641571 | None:intergenic |
| GAGAAACCCAATAACAGAAT+TGG | 0.390306 | 1.4:+45643786 | MS.gene57045:CDS |
| GTTTGAGGAGCTTGGAGAAT+AGG | 0.397127 | 1.4:+45640948 | MS.gene57045:CDS |
| TTCAGGCACTTGAGGCTGAT+AGG | 0.398288 | 1.4:+45641425 | MS.gene57045:CDS |
| CATGTAAAGCTTCTTAATGT+AGG | 0.398593 | 1.4:-45641398 | None:intergenic |
| ATCATCGAAAACTCCAGCTT+TGG | 0.399638 | 1.4:-45641323 | None:intergenic |
| TTCAAATTCGAATTGTCCTC+TGG | 0.399754 | 1.4:-45641202 | None:intergenic |
| GGCTTTACAGGTTCCAAAGC+TGG | 0.408092 | 1.4:+45641310 | MS.gene57045:CDS |
| GGTGGGATGTGTAAAGAAAT+AGG | 0.411105 | 1.4:+45641115 | MS.gene57045:CDS |
| CAATTGACTCTGTTCATTCT+GGG | 0.412467 | 1.4:+45641275 | MS.gene57045:CDS |
| CCCCTTGGTGTGTTCGTGTA+TGG | 0.417159 | 1.4:-45643882 | None:intergenic |
| ACCTGTGTCGTCGGTTGCGC+GGG | 0.422138 | 1.4:+45640442 | MS.gene57045:CDS |
| TCTGTGACCCAGTTCATTAA+AGG | 0.424771 | 1.4:-45643741 | None:intergenic |
| GGAGAATAGGATTTCTCAAA+TGG | 0.426445 | 1.4:+45640961 | MS.gene57045:CDS |
| TAATGACCGTTTGAGGAGCT+TGG | 0.436236 | 1.4:+45640940 | MS.gene57045:CDS |
| GGATTTGAATGAGGAGTTGG+AGG | 0.445102 | 1.4:+45640529 | MS.gene57045:CDS |
| ATTCCCTGATTCCTTTGGAC+TGG | 0.453675 | 1.4:-45641353 | None:intergenic |
| CTCTGTTCATTCTGGGGCAC+CGG | 0.453986 | 1.4:+45641282 | MS.gene57045:CDS |
| GGAGAAAATGACGCATGATC+AGG | 0.455281 | 1.4:+45640667 | MS.gene57045:CDS |
| TTGTTGAAATGTTGTGATTG+TGG | 0.462676 | 1.4:+45640329 | MS.gene57045:CDS |
| TCAGGATTTGAATGAGGAGT+TGG | 0.463110 | 1.4:+45640526 | MS.gene57045:CDS |
| TTTGAGGTTGCAGAGGGAAA+AGG | 0.465476 | 1.4:+45640601 | MS.gene57045:CDS |
| TTTACGGTCTTGCCACCCCT+TGG | 0.469805 | 1.4:-45643897 | None:intergenic |
| TTTGAATGAGGAGTTGGAGG+AGG | 0.470668 | 1.4:+45640532 | MS.gene57045:CDS |
| GATATTGAGAAATATGCATT+TGG | 0.470801 | 1.4:+45640908 | MS.gene57045:CDS |
| TTGTGGATGTAGTTGTTCCT+TGG | 0.472863 | 1.4:+45640346 | MS.gene57045:CDS |
| GGGATCCCCGCGATAAATCA+TGG | 0.473889 | 1.4:-45643833 | None:intergenic |
| TGCTTCCACAGCTGCGAATG+AGG | 0.477326 | 1.4:+45640565 | MS.gene57045:CDS |
| GTTACGGAGAAAGTAATTGT+TGG | 0.483998 | 1.4:+45641034 | MS.gene57045:CDS |
| TTTAAAGGAGGGTATTCGTA+TGG | 0.487165 | 1.4:-45640839 | None:intergenic |
| GGAAAAGGCGGAAGTTCAAA+TGG | 0.490761 | 1.4:+45640616 | MS.gene57045:CDS |
| TGGATGTAGTTGTTCCTTGG+TGG | 0.490768 | 1.4:+45640349 | MS.gene57045:CDS |
| GAACCTGTAAAGCCATTATC+CGG | 0.491366 | 1.4:-45641301 | None:intergenic |
| CAATAACAGAATTGGCAGAT+TGG | 0.497710 | 1.4:+45643794 | MS.gene57045:CDS |
| ACCATCCACCTGGCTGTAAG+TGG | 0.503511 | 1.4:-45640993 | None:intergenic |
| TCAGGCACTTGAGGCTGATA+GGG | 0.504864 | 1.4:+45641426 | MS.gene57045:CDS |
| TTGTTCTTGGGAGACTCTGT+AGG | 0.505523 | 1.4:-45641148 | None:intergenic |
| CATGAGGCTTCAGGCACTTG+AGG | 0.506019 | 1.4:+45641417 | MS.gene57045:CDS |
| TACCTGTGTCGTCGGTTGCG+CGG | 0.506467 | 1.4:+45640441 | MS.gene57045:CDS |
| CTATTTAAGTATTATGCCCA+TGG | 0.507593 | 1.4:-45643935 | None:intergenic |
| GGTGTGTTCGTGTATGGCAT+TGG | 0.509283 | 1.4:-45643876 | None:intergenic |
| GGACAATTCGAATTTGAAGA+AGG | 0.513060 | 1.4:+45641207 | MS.gene57045:CDS |
| TATGGCATTGGCTGGAATTG+GGG | 0.514162 | 1.4:-45643864 | None:intergenic |
| TGTTCGTGTATGGCATTGGC+TGG | 0.519937 | 1.4:-45643872 | None:intergenic |
| TCTGACTCAGCAACGTTCGG+TGG | 0.530457 | 1.4:+45641097 | MS.gene57045:CDS |
| TGTTCTTGGGAGACTCTGTA+GGG | 0.530579 | 1.4:-45641147 | None:intergenic |
| GAACAATAACAAGTATAAGA+AGG | 0.531882 | 1.4:+45641165 | MS.gene57045:CDS |
| ATGTAAAGCTTCTTAATGTA+GGG | 0.531958 | 1.4:-45641397 | None:intergenic |
| ATCACCTTCGACCTCATCCT+CGG | 0.533257 | 1.4:-45640798 | None:intergenic |
| AACGATTCAGGATTTGAATG+AGG | 0.533822 | 1.4:+45640520 | MS.gene57045:CDS |
| AAACTCCTAATGACCGTTTG+AGG | 0.535504 | 1.4:+45640933 | MS.gene57045:CDS |
| CATTGCCTCATTCGCAGCTG+TGG | 0.537747 | 1.4:-45640570 | None:intergenic |
| CCGCTCCCATGATTTATCGC+GGG | 0.541482 | 1.4:+45643827 | MS.gene57045:CDS |
| TTCAACAAATCCCTCGGAGA+TGG | 0.542740 | 1.4:-45640314 | None:intergenic |
| TGCCCATGGTATGAATCGTA+TGG | 0.545996 | 1.4:-45643921 | None:intergenic |
| CAACCAGTCCAAAGGAATCA+GGG | 0.548648 | 1.4:+45641350 | MS.gene57045:CDS |
| AAAGGAGGGTATTCGTATGG+AGG | 0.549905 | 1.4:-45640836 | None:intergenic |
| TGATAGGGAATCAATGAGGC+AGG | 0.551938 | 1.4:+45641441 | MS.gene57045:CDS |
| CGAGCAAGCCTGCAAGATCT+CGG | 0.551994 | 1.4:+45641563 | MS.gene57045:CDS |
| ATGGCATTGGCTGGAATTGG+GGG | 0.557747 | 1.4:-45643863 | None:intergenic |
| GGGAGACTCTGTAGGGAACT+CGG | 0.562340 | 1.4:-45641140 | None:intergenic |
| TATTCTCCAAGCTCCTCAAA+CGG | 0.563369 | 1.4:-45640946 | None:intergenic |
| CGCTCCCATGATTTATCGCG+GGG | 0.575385 | 1.4:+45643828 | MS.gene57045:CDS |
| ACCGAACGTTGCTGAGTCAG+AGG | 0.583019 | 1.4:-45641095 | None:intergenic |
| AACCATACGATTCATACCAT+GGG | 0.583268 | 1.4:+45643919 | MS.gene57045:CDS |
| CCCACTTACAGCCAGGTGGA+TGG | 0.583532 | 1.4:+45640992 | MS.gene57045:CDS |
| CTGACTCAGCAACGTTCGGT+GGG | 0.585081 | 1.4:+45641098 | MS.gene57045:CDS |
| AAACCATACGATTCATACCA+TGG | 0.585461 | 1.4:+45643918 | MS.gene57045:CDS |
| ATGTGTTGTGTTACGTGAGA+TGG | 0.587855 | 1.4:+45640481 | MS.gene57045:CDS |
| CAATAAAATCACCATCCACC+TGG | 0.588402 | 1.4:-45641003 | None:intergenic |
| GAAAACTCCCACTTACAGCC+AGG | 0.590810 | 1.4:+45640985 | MS.gene57045:CDS |
| ACCGCTCCCATGATTTATCG+CGG | 0.591962 | 1.4:+45643826 | MS.gene57045:CDS |
| TGCCATACACGAACACACCA+AGG | 0.600914 | 1.4:+45643880 | MS.gene57045:CDS |
| AAGGTAGATAATGCTTCAGA+AGG | 0.602096 | 1.4:+45641226 | MS.gene57045:CDS |
| GCGATAAATCATGGGAGCGG+TGG | 0.606083 | 1.4:-45643824 | None:intergenic |
| AGCACAGGTTGTGTTACTGA+AGG | 0.606214 | 1.4:+45641489 | MS.gene57045:CDS |
| AATGAGCACAGATAAAGCAC+AGG | 0.607100 | 1.4:+45641474 | MS.gene57045:CDS |
| GGATCCCCGCGATAAATCAT+GGG | 0.607227 | 1.4:-45643832 | None:intergenic |
| CAACATTTCAACAAATCCCT+CGG | 0.610770 | 1.4:-45640320 | None:intergenic |
| AAAGATGCCTTTAATGAACT+GGG | 0.611623 | 1.4:+45643734 | MS.gene57045:intron |
| GCCATACACGAACACACCAA+GGG | 0.612716 | 1.4:+45643881 | MS.gene57045:CDS |
| AATTGACTCTGTTCATTCTG+GGG | 0.616386 | 1.4:+45641276 | MS.gene57045:CDS |
| TAATGTCATGTATAATGGCA+TGG | 0.619732 | 1.4:+45640865 | MS.gene57045:CDS |
| ACATTAAGAAGCTTTACATG+AGG | 0.620076 | 1.4:+45641401 | MS.gene57045:CDS |
| TGATTATGCAACCAGTCCAA+AGG | 0.622802 | 1.4:+45641342 | MS.gene57045:CDS |
| TTCAGAACATTGTTCCACCA+AGG | 0.625495 | 1.4:-45640363 | None:intergenic |
| AATGGATGCGATCTGTTAAG+CGG | 0.631622 | 1.4:+45640387 | MS.gene57045:CDS |
| ACCCGCGCAACCGACGACAC+AGG | 0.633336 | 1.4:-45640443 | None:intergenic |
| GAAAATGACGCATGATCAGG+AGG | 0.634038 | 1.4:+45640670 | MS.gene57045:CDS |
| CCCGCGATAAATCATGGGAG+CGG | 0.634266 | 1.4:-45643827 | None:intergenic |
| CCATCCACCTGGCTGTAAGT+GGG | 0.639457 | 1.4:-45640992 | None:intergenic |
| TAGTGAATTACCTGTGTCGT+CGG | 0.646306 | 1.4:+45640433 | MS.gene57045:CDS |
| GAGGTTGCAGAGGGAAAAGG+CGG | 0.649166 | 1.4:+45640604 | MS.gene57045:CDS |
| TACACGAACACACCAAGGGG+TGG | 0.649548 | 1.4:+45643885 | MS.gene57045:CDS |
| AAGTTCAGGCTTATAAACAC+AGG | 0.657321 | 1.4:+45640756 | MS.gene57045:CDS |
| GGATTATTTCTCTCAACCAG+AGG | 0.660219 | 1.4:+45641186 | MS.gene57045:CDS |
| TACACCGAGGATGAGGTCGA+AGG | 0.669244 | 1.4:+45640794 | MS.gene57045:CDS |
| AACTCCCACTTACAGCCAGG+TGG | 0.685414 | 1.4:+45640988 | MS.gene57045:CDS |
| CCATACACGAACACACCAAG+GGG | 0.698089 | 1.4:+45643882 | MS.gene57045:CDS |
| AGGCTGATAGGGAATCAATG+AGG | 0.730909 | 1.4:+45641437 | MS.gene57045:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTTTTTGTTTAG+TGG | + | chr1.4:45642102-45642121 | MS.gene57045:intron | 10.0% |
| !! | AATTTATATATACATGCATA+TGG | + | chr1.4:45643282-45643301 | MS.gene57045:intron | 15.0% |
| !! | ATGAAAAAAAATACATTTCA+TGG | + | chr1.4:45642046-45642065 | MS.gene57045:intron | 15.0% |
| !! | TATATATAAATTTGTGAAAC+TGG | - | chr1.4:45643274-45643293 | None:intergenic | 15.0% |
| !!! | AAATGTATTTTTTTTCATCA+GGG | - | chr1.4:45642044-45642063 | None:intergenic | 15.0% |
| !!! | AACTTTGGTAATAATTTTAT+AGG | - | chr1.4:45643111-45643130 | None:intergenic | 15.0% |
| !!! | AATTTTATAGGGTATTTTAT+AGG | - | chr1.4:45643099-45643118 | None:intergenic | 15.0% |
| !!! | ACTTTGGTAATAATTTTATA+GGG | - | chr1.4:45643110-45643129 | None:intergenic | 15.0% |
| !!! | ATTTTATAGGGTATTTTATA+GGG | - | chr1.4:45643098-45643117 | None:intergenic | 15.0% |
| !!! | TTTTATTGGAAAAAATGTTA+CGG | + | chr1.4:45641018-45641037 | MS.gene57045:CDS | 15.0% |
| !! | AAATGTAATGTCATGTATAA+TGG | + | chr1.4:45640860-45640879 | MS.gene57045:CDS | 20.0% |
| !! | ATAGTTATCCACTAATATAT+AGG | + | chr1.4:45643634-45643653 | MS.gene57045:intron | 20.0% |
| !! | TTGAAATAACTTATAACCAT+AGG | - | chr1.4:45642469-45642488 | None:intergenic | 20.0% |
| !! | TTTCAACTAATGATTTATTG+CGG | + | chr1.4:45641676-45641695 | MS.gene57045:intron | 20.0% |
| !!! | ATGATTACATTTTGATGTTT+TGG | - | chr1.4:45643475-45643494 | None:intergenic | 20.0% |
| !!! | GAAATGTATTTTTTTTCATC+AGG | - | chr1.4:45642045-45642064 | None:intergenic | 20.0% |
| !!! | GTTATAAGTTATTTCAAAGA+AGG | + | chr1.4:45642472-45642491 | MS.gene57045:intron | 20.0% |
| !!! | TACATGACATTACATTTTAA+AGG | - | chr1.4:45640857-45640876 | None:intergenic | 20.0% |
| !!! | TACTGTACTTTTTGTTTTTT+TGG | + | chr1.4:45642924-45642943 | MS.gene57045:intron | 20.0% |
| !!! | TATGTAGGTTATAGAATTTT+GGG | - | chr1.4:45643365-45643384 | None:intergenic | 20.0% |
| !!! | TTATACTTGTTATTGTTCTT+GGG | - | chr1.4:45641163-45641182 | None:intergenic | 20.0% |
| !!! | TTATGTAGGTTATAGAATTT+TGG | - | chr1.4:45643366-45643385 | None:intergenic | 20.0% |
| ! | AAAAGCAAACAATGATGAAA+TGG | - | chr1.4:45641659-45641678 | None:intergenic | 25.0% |
| ! | AACTTTCAAAGATAAAGACA+TGG | - | chr1.4:45642531-45642550 | None:intergenic | 25.0% |
| ! | AATTAATAACAACATCACAG+TGG | - | chr1.4:45643033-45643052 | None:intergenic | 25.0% |
| ! | AGGAAACTAACATATATAGA+AGG | - | chr1.4:45642690-45642709 | None:intergenic | 25.0% |
| ! | AGTTCGTACACATAAAAAAT+TGG | + | chr1.4:45643611-45643630 | MS.gene57045:intron | 25.0% |
| ! | ATGTAAAGCTTCTTAATGTA+GGG | - | chr1.4:45641400-45641419 | None:intergenic | 25.0% |
| ! | CAACTAATCCTATATATTAG+TGG | - | chr1.4:45643645-45643664 | None:intergenic | 25.0% |
| ! | GAACAATAACAAGTATAAGA+AGG | + | chr1.4:45641165-45641184 | MS.gene57045:CDS | 25.0% |
| ! | GATATTGAGAAATATGCATT+TGG | + | chr1.4:45640908-45640927 | MS.gene57045:CDS | 25.0% |
| ! | GGAAACTAACATATATAGAA+GGG | - | chr1.4:45642689-45642708 | None:intergenic | 25.0% |
| ! | TATAAATTTGTGAAACTGGT+AGG | - | chr1.4:45643270-45643289 | None:intergenic | 25.0% |
| ! | TTAAGGCATGTTTGAAAAAT+TGG | - | chr1.4:45641739-45641758 | None:intergenic | 25.0% |
| ! | TTATTATAGACATTTGCCTT+TGG | + | chr1.4:45641897-45641916 | MS.gene57045:intron | 25.0% |
| !! | ACCTACATAAACTCAAATTT+TGG | + | chr1.4:45643376-45643395 | MS.gene57045:intron | 25.0% |
| !! | CAAAATTTAGCTTCCAATTA+AGG | - | chr1.4:45641756-45641775 | None:intergenic | 25.0% |
| !! | TCCAAAATTTGAGTTTATGT+AGG | - | chr1.4:45643380-45643399 | None:intergenic | 25.0% |
| !! | TTCTCAATAAAAGGACTTTT+GGG | - | chr1.4:45642423-45642442 | None:intergenic | 25.0% |
| !! | TTGTTATTAATTATGCTTCC+TGG | + | chr1.4:45643041-45643060 | MS.gene57045:intron | 25.0% |
| !!! | ATGACATTACATTTTAAAGG+AGG | - | chr1.4:45640854-45640873 | None:intergenic | 25.0% |
| !!! | ATGTTTTGGATTTTCTTATG+GGG | - | chr1.4:45643461-45643480 | None:intergenic | 25.0% |
| !!! | CTTATACTTGTTATTGTTCT+TGG | - | chr1.4:45641164-45641183 | None:intergenic | 25.0% |
| !!! | GATGTTTTGGATTTTCTTAT+GGG | - | chr1.4:45643462-45643481 | None:intergenic | 25.0% |
| !!! | TGACATTACATTTTAAAGGA+GGG | - | chr1.4:45640853-45640872 | None:intergenic | 25.0% |
| !!! | TGATGTTTTGGATTTTCTTA+TGG | - | chr1.4:45643463-45643482 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTGGAACTTCTT+TGG | + | chr1.4:45642935-45642954 | MS.gene57045:intron | 25.0% |
| !!! | TTTTTCAAACATGCCTTAAT+TGG | + | chr1.4:45641740-45641759 | MS.gene57045:intron | 25.0% |
| AAAAGATGCCTTTAATGAAC+TGG | + | chr1.4:45643733-45643752 | MS.gene57045:intron | 30.0% | |
| AAAGATGCCTTTAATGAACT+GGG | + | chr1.4:45643734-45643753 | MS.gene57045:intron | 30.0% | |
| AATCTGCCAATTCTGTTATT+GGG | - | chr1.4:45643795-45643814 | None:intergenic | 30.0% | |
| ACATTAAGAAGCTTTACATG+AGG | + | chr1.4:45641401-45641420 | MS.gene57045:CDS | 30.0% | |
| ACATTTAGTGTGTTAGTCAT+CGG | + | chr1.4:45642866-45642885 | MS.gene57045:intron | 30.0% | |
| AGAACTACCTTCTCAATAAA+AGG | - | chr1.4:45642432-45642451 | None:intergenic | 30.0% | |
| AGTAGTCAGGAAAAATGTTA+AGG | - | chr1.4:45642180-45642199 | None:intergenic | 30.0% | |
| ATTCTCCTTCGTATCAATTT+CGG | + | chr1.4:45642787-45642806 | MS.gene57045:intron | 30.0% | |
| ATTGTTACATGTGTTATCGA+TGG | + | chr1.4:45642233-45642252 | MS.gene57045:intron | 30.0% | |
| CATGTAAAGCTTCTTAATGT+AGG | - | chr1.4:45641401-45641420 | None:intergenic | 30.0% | |
| CTAGATAACGTTTACATACA+GGG | - | chr1.4:45641876-45641895 | None:intergenic | 30.0% | |
| GCATATAAATCGACACAATT+GGG | + | chr1.4:45643317-45643336 | MS.gene57045:intron | 30.0% | |
| GGAAAACACTTCTTAATTGT+TGG | + | chr1.4:45642607-45642626 | MS.gene57045:intron | 30.0% | |
| TAATGTCATGTATAATGGCA+TGG | + | chr1.4:45640865-45640884 | MS.gene57045:CDS | 30.0% | |
| TATGAAGTTTCAATGACAAC+TGG | - | chr1.4:45642556-45642575 | None:intergenic | 30.0% | |
| TATTTCAAACTCACATCACT+AGG | - | chr1.4:45642375-45642394 | None:intergenic | 30.0% | |
| TGCATATAAATCGACACAAT+TGG | + | chr1.4:45643316-45643335 | MS.gene57045:intron | 30.0% | |
| TTGATGGAACTGTATCAATA+TGG | - | chr1.4:45642983-45643002 | None:intergenic | 30.0% | |
| TTGTTGAAATGTTGTGATTG+TGG | + | chr1.4:45640329-45640348 | MS.gene57045:CDS | 30.0% | |
| ! | ATTTTATAGGGTAGTTTCAC+AGG | - | chr1.4:45643086-45643105 | None:intergenic | 30.0% |
| ! | CAAAAGTCCTTTTATTGAGA+AGG | + | chr1.4:45642422-45642441 | MS.gene57045:intron | 30.0% |
| ! | CTTCTCAATAAAAGGACTTT+TGG | - | chr1.4:45642424-45642443 | None:intergenic | 30.0% |
| ! | TCGGTACTTGTCAATTTTTA+AGG | + | chr1.4:45641582-45641601 | MS.gene57045:CDS | 30.0% |
| ! | TTTCATGGTAGATTTTGCAA+TGG | + | chr1.4:45642061-45642080 | MS.gene57045:intron | 30.0% |
| ! | TTTCTCAGATATGTTTTCGT+GGG | - | chr1.4:45643772-45643791 | None:intergenic | 30.0% |
| ! | TTTTATAGGGTAGTTTCACA+GGG | - | chr1.4:45643085-45643104 | None:intergenic | 30.0% |
| !! | CTTTGGTAGTTTTTGAAAGT+TGG | + | chr1.4:45642952-45642971 | MS.gene57045:intron | 30.0% |
| !! | GTATGAATCGTATGGTTTTA+CGG | - | chr1.4:45643916-45643935 | None:intergenic | 30.0% |
| !! | TGGAACAATGTTCTGAAAAA+TGG | + | chr1.4:45640369-45640388 | MS.gene57045:CDS | 30.0% |
| !! | TTGGTTTTCAAAGTGCATAT+GGG | + | chr1.4:45642586-45642605 | MS.gene57045:intron | 30.0% |
| !!! | AGATCAGAGTATTTTTTGTG+AGG | - | chr1.4:45641938-45641957 | None:intergenic | 30.0% |
| !!! | AGTTCATTAAAGGCATCTTT+TGG | - | chr1.4:45643734-45643753 | None:intergenic | 30.0% |
| !!! | ATCAGAGTATTTTTTGTGAG+GGG | - | chr1.4:45641936-45641955 | None:intergenic | 30.0% |
| !!! | CATCTGTTTTGTTTTAAACC+AGG | - | chr1.4:45643062-45643081 | None:intergenic | 30.0% |
| !!! | GATCAGAGTATTTTTTGTGA+GGG | - | chr1.4:45641937-45641956 | None:intergenic | 30.0% |
| !!! | GCTATCATGTTTTTTAGACT+AGG | + | chr1.4:45643156-45643175 | MS.gene57045:intron | 30.0% |
| !!! | GGATCACATCAATTGTTTTT+TGG | + | chr1.4:45642123-45642142 | MS.gene57045:intron | 30.0% |
| !!! | GTTCATTAAAGGCATCTTTT+GGG | - | chr1.4:45643733-45643752 | None:intergenic | 30.0% |
| !!! | TTTGGTTTTCAAAGTGCATA+TGG | + | chr1.4:45642585-45642604 | MS.gene57045:intron | 30.0% |
| AAAACAAAGCAGGGTGAAAA+AGG | + | chr1.4:45643563-45643582 | MS.gene57045:intron | 35.0% | |
| AAACAAAGCAGGGTGAAAAA+GGG | + | chr1.4:45643564-45643583 | MS.gene57045:intron | 35.0% | |
| AAACCATACGATTCATACCA+TGG | + | chr1.4:45643918-45643937 | MS.gene57045:CDS | 35.0% | |
| AACCATACGATTCATACCAT+GGG | + | chr1.4:45643919-45643938 | MS.gene57045:CDS | 35.0% | |
| AACGATTCAGGATTTGAATG+AGG | + | chr1.4:45640520-45640539 | MS.gene57045:CDS | 35.0% | |
| AAGGTAGATAATGCTTCAGA+AGG | + | chr1.4:45641226-45641245 | MS.gene57045:CDS | 35.0% | |
| AAGTTCAGGCTTATAAACAC+AGG | + | chr1.4:45640756-45640775 | MS.gene57045:CDS | 35.0% | |
| ACTAACACACTAAATGTTGC+CGG | - | chr1.4:45642863-45642882 | None:intergenic | 35.0% | |
| AGGATCTCAACTAACTACTT+TGG | - | chr1.4:45643184-45643203 | None:intergenic | 35.0% | |
| AGTAGAAAACTACGTTAGAG+AGG | + | chr1.4:45643587-45643606 | MS.gene57045:intron | 35.0% | |
| CAACATTTCAACAAATCCCT+CGG | - | chr1.4:45640323-45640342 | None:intergenic | 35.0% | |
| CAATAACAGAATTGGCAGAT+TGG | + | chr1.4:45643794-45643813 | MS.gene57045:CDS | 35.0% | |
| CAATCAGTGCTGTCAAATAT+CGG | - | chr1.4:45642337-45642356 | None:intergenic | 35.0% | |
| CAATCTGCCAATTCTGTTAT+TGG | - | chr1.4:45643796-45643815 | None:intergenic | 35.0% | |
| CCTAGATAACGTTTACATAC+AGG | - | chr1.4:45641877-45641896 | None:intergenic | 35.0% | |
| CCTGTATGTAAACGTTATCT+AGG | + | chr1.4:45641874-45641893 | MS.gene57045:intron | 35.0% | |
| GAAGCACGATGAGTTTAAAT+TGG | + | chr1.4:45640409-45640428 | MS.gene57045:CDS | 35.0% | |
| GACATCATCAAACTGAACTT+TGG | - | chr1.4:45643126-45643145 | None:intergenic | 35.0% | |
| GAGAAACCCAATAACAGAAT+TGG | + | chr1.4:45643786-45643805 | MS.gene57045:CDS | 35.0% | |
| GGACAATTCGAATTTGAAGA+AGG | + | chr1.4:45641207-45641226 | MS.gene57045:CDS | 35.0% | |
| GGAGAATAGGATTTCTCAAA+TGG | + | chr1.4:45640961-45640980 | MS.gene57045:CDS | 35.0% | |
| GTAGAAAACTACGTTAGAGA+GGG | + | chr1.4:45643588-45643607 | MS.gene57045:intron | 35.0% | |
| GTTACGGAGAAAGTAATTGT+TGG | + | chr1.4:45641034-45641053 | MS.gene57045:CDS | 35.0% | |
| TACAGTTCCATCAAAGCATA+TGG | + | chr1.4:45642989-45643008 | MS.gene57045:intron | 35.0% | |
| TAGTTTCCTCTTTCTAACAC+CGG | + | chr1.4:45642841-45642860 | MS.gene57045:intron | 35.0% | |
| TTAAGGTCACTTACTTGCTT+TGG | - | chr1.4:45642163-45642182 | None:intergenic | 35.0% | |
| TTCAAATTCGAATTGTCCTC+TGG | - | chr1.4:45641205-45641224 | None:intergenic | 35.0% | |
| TTTATGGTGGCTTAAAATGG+CGG | - | chr1.4:45642274-45642293 | None:intergenic | 35.0% | |
| ! | AAACACAGGATGATGAGTTT+TGG | + | chr1.4:45640770-45640789 | MS.gene57045:CDS | 35.0% |
| ! | AACACAGGATGATGAGTTTT+GGG | + | chr1.4:45640771-45640790 | MS.gene57045:CDS | 35.0% |
| ! | AACTTCATAGCATCTAGCTT+TGG | + | chr1.4:45642567-45642586 | MS.gene57045:intron | 35.0% |
| ! | AATTGACTCTGTTCATTCTG+GGG | + | chr1.4:45641276-45641295 | MS.gene57045:CDS | 35.0% |
| ! | ACAATTGACTCTGTTCATTC+TGG | + | chr1.4:45641274-45641293 | MS.gene57045:CDS | 35.0% |
| ! | CAATTGACTCTGTTCATTCT+GGG | + | chr1.4:45641275-45641294 | MS.gene57045:CDS | 35.0% |
| ! | CGTTTTATGGTGGCTTAAAA+TGG | - | chr1.4:45642277-45642296 | None:intergenic | 35.0% |
| ! | GTTTCTCAGATATGTTTTCG+TGG | - | chr1.4:45643773-45643792 | None:intergenic | 35.0% |
| ! | TATGTATGTTCTGAGTAGTC+AGG | - | chr1.4:45642193-45642212 | None:intergenic | 35.0% |
| ! | TCAATTTAAGCGTTTTGCAG+AGG | + | chr1.4:45640646-45640665 | MS.gene57045:CDS | 35.0% |
| !! | CTCGTACTCATTTTTCTTTG+CGG | - | chr1.4:45641547-45641566 | None:intergenic | 35.0% |
| !! | GGTAGTTCTTTTGATTCAAG+TGG | + | chr1.4:45642443-45642462 | MS.gene57045:intron | 35.0% |
| !! | TTTAAAGGAGGGTATTCGTA+TGG | - | chr1.4:45640842-45640861 | None:intergenic | 35.0% |
| !!! | AGTGGAATTGCTATTTTCGA+AGG | - | chr1.4:45643015-45643034 | None:intergenic | 35.0% |
| !!! | TCAGAGTATTTTTTGTGAGG+GGG | - | chr1.4:45641935-45641954 | None:intergenic | 35.0% |
| !!! | TTTTTCACCCTGCTTTGTTT+TGG | - | chr1.4:45643564-45643583 | None:intergenic | 35.0% |
| AAACTCCTAATGACCGTTTG+AGG | + | chr1.4:45640933-45640952 | MS.gene57045:CDS | 40.0% | |
| AATGAGCACAGATAAAGCAC+AGG | + | chr1.4:45641474-45641493 | MS.gene57045:CDS | 40.0% | |
| AATGGATGCGATCTGTTAAG+CGG | + | chr1.4:45640387-45640406 | MS.gene57045:CDS | 40.0% | |
| AATGTTAGTCCAGTGCATGT+TGG | - | chr1.4:45642650-45642669 | None:intergenic | 40.0% | |
| ATCATCGAAAACTCCAGCTT+TGG | - | chr1.4:45641326-45641345 | None:intergenic | 40.0% | |
| ATGTGTTGTGTTACGTGAGA+TGG | + | chr1.4:45640481-45640500 | MS.gene57045:CDS | 40.0% | |
| ATGTTAGTCCAGTGCATGTT+GGG | - | chr1.4:45642649-45642668 | None:intergenic | 40.0% | |
| CAATAAAATCACCATCCACC+TGG | - | chr1.4:45641006-45641025 | None:intergenic | 40.0% | |
| CATGCATCCAAAACAAAGCA+GGG | + | chr1.4:45643554-45643573 | MS.gene57045:intron | 40.0% | |
| GAACCTGTAAAGCCATTATC+CGG | - | chr1.4:45641304-45641323 | None:intergenic | 40.0% | |
| GGGAGTTCTTTAGTTGTTTG+TGG | - | chr1.4:45643441-45643460 | None:intergenic | 40.0% | |
| GGTGGGATGTGTAAAGAAAT+AGG | + | chr1.4:45641115-45641134 | MS.gene57045:CDS | 40.0% | |
| GTTACATGTGTTATCGATGG+CGG | + | chr1.4:45642236-45642255 | MS.gene57045:intron | 40.0% | |
| TAGTGAATTACCTGTGTCGT+CGG | + | chr1.4:45640433-45640452 | MS.gene57045:CDS | 40.0% | |
| TATGGCCAGTTTGTAAAGGA+TGG | - | chr1.4:45642311-45642330 | None:intergenic | 40.0% | |
| TATTCTCCAAGCTCCTCAAA+CGG | - | chr1.4:45640949-45640968 | None:intergenic | 40.0% | |
| TCAGGAGGAACTTATGTCTT+TGG | + | chr1.4:45640685-45640704 | MS.gene57045:CDS | 40.0% | |
| TCAGGATTTGAATGAGGAGT+TGG | + | chr1.4:45640526-45640545 | MS.gene57045:CDS | 40.0% | |
| TCATGCATCCAAAACAAAGC+AGG | + | chr1.4:45643553-45643572 | MS.gene57045:intron | 40.0% | |
| TCCTTCGTATCAATTTCGGT+GGG | + | chr1.4:45642791-45642810 | MS.gene57045:intron | 40.0% | |
| TCCTTTACAAACTGGCCATA+TGG | + | chr1.4:45642311-45642330 | MS.gene57045:intron | 40.0% | |
| TCTGTGACCCAGTTCATTAA+AGG | - | chr1.4:45643744-45643763 | None:intergenic | 40.0% | |
| TGAATTGGGAGATTGTAGCA+CGG | + | chr1.4:45643234-45643253 | MS.gene57045:intron | 40.0% | |
| TGATGATTCCCTGATTCCTT+TGG | - | chr1.4:45641361-45641380 | None:intergenic | 40.0% | |
| TGATTATGCAACCAGTCCAA+AGG | + | chr1.4:45641342-45641361 | MS.gene57045:CDS | 40.0% | |
| TGTTGTAGTCACAGCTAATG+AGG | + | chr1.4:45643678-45643697 | MS.gene57045:intron | 40.0% | |
| TTCAGAACATTGTTCCACCA+AGG | - | chr1.4:45640366-45640385 | None:intergenic | 40.0% | |
| TTGTGGATGTAGTTGTTCCT+TGG | + | chr1.4:45640346-45640365 | MS.gene57045:CDS | 40.0% | |
| ! | AGGCAATGTCGATGATTTTG+AGG | + | chr1.4:45640585-45640604 | MS.gene57045:CDS | 40.0% |
| ! | CAGATATGTTTTCGTGGGTA+TGG | - | chr1.4:45643767-45643786 | None:intergenic | 40.0% |
| ! | CAGGTGGATGGTGATTTTAT+TGG | + | chr1.4:45641004-45641023 | MS.gene57045:CDS | 40.0% |
| ! | GGATTATTTCTCTCAACCAG+AGG | + | chr1.4:45641186-45641205 | MS.gene57045:CDS | 40.0% |
| !! | CTTTTGATTCAAGTGGCCTA+TGG | + | chr1.4:45642450-45642469 | MS.gene57045:intron | 40.0% |
| !!! | CAGAGTATTTTTTGTGAGGG+GGG | - | chr1.4:45641934-45641953 | None:intergenic | 40.0% |
| !!! | GATGATTTTGAGGTTGCAGA+GGG | + | chr1.4:45640595-45640614 | MS.gene57045:CDS | 40.0% |
| AAGCTCCTCAAACGGTCATT+AGG | - | chr1.4:45640941-45640960 | None:intergenic | 45.0% | |
| AGGCTGATAGGGAATCAATG+AGG | + | chr1.4:45641437-45641456 | MS.gene57045:CDS | 45.0% | |
| AGTTTCCTCTTTAACCCGCT+TGG | + | chr1.4:45642702-45642721 | MS.gene57045:intron | 45.0% | |
| ATTCCCTGATTCCTTTGGAC+TGG | - | chr1.4:45641356-45641375 | None:intergenic | 45.0% | |
| CAACCAGTCCAAAGGAATCA+GGG | + | chr1.4:45641350-45641369 | MS.gene57045:CDS | 45.0% | |
| CACTGCCATCCTTTACAAAC+TGG | + | chr1.4:45642303-45642322 | MS.gene57045:intron | 45.0% | |
| CTCCTTCGTATCAATTTCGG+TGG | + | chr1.4:45642790-45642809 | MS.gene57045:intron | 45.0% | |
| GAAAATGACGCATGATCAGG+AGG | + | chr1.4:45640670-45640689 | MS.gene57045:CDS | 45.0% | |
| GAAGCTTTACATGAGGCTTC+AGG | + | chr1.4:45641408-45641427 | MS.gene57045:CDS | 45.0% | |
| GAATCGAACCTAAGACCTTG+AGG | - | chr1.4:45642771-45642790 | None:intergenic | 45.0% | |
| GCCATATGGCCAGTTTGTAA+AGG | - | chr1.4:45642315-45642334 | None:intergenic | 45.0% | |
| GCTGTCAAATATCGGCCATA+TGG | - | chr1.4:45642329-45642348 | None:intergenic | 45.0% | |
| GGAAAAAGTTCCATCTCCGA+GGG | + | chr1.4:45640304-45640323 | MS.gene57045:CDS | 45.0% | |
| GGAAAAGGCGGAAGTTCAAA+TGG | + | chr1.4:45640616-45640635 | MS.gene57045:CDS | 45.0% | |
| GGAGAAAATGACGCATGATC+AGG | + | chr1.4:45640667-45640686 | MS.gene57045:CDS | 45.0% | |
| GGATTTGAATGAGGAGTTGG+AGG | + | chr1.4:45640529-45640548 | MS.gene57045:CDS | 45.0% | |
| GTTTCCTCTTTAACCCGCTT+GGG | + | chr1.4:45642703-45642722 | MS.gene57045:intron | 45.0% | |
| GTTTGAGGAGCTTGGAGAAT+AGG | + | chr1.4:45640948-45640967 | MS.gene57045:CDS | 45.0% | |
| TAAGCCACCATAAAACGCCA+TGG | + | chr1.4:45642280-45642299 | MS.gene57045:intron | 45.0% | |
| TAATGACCGTTTGAGGAGCT+TGG | + | chr1.4:45640940-45640959 | MS.gene57045:CDS | 45.0% | |
| TATGCAGCAGAGAACGATTC+AGG | + | chr1.4:45640508-45640527 | MS.gene57045:CDS | 45.0% | |
| TCGAAGGCCATATGCTTTGA+TGG | - | chr1.4:45642999-45643018 | None:intergenic | 45.0% | |
| TGAGATCCTGCACAGTATTG+AGG | + | chr1.4:45643195-45643214 | MS.gene57045:intron | 45.0% | |
| TGATAGGGAATCAATGAGGC+AGG | + | chr1.4:45641441-45641460 | MS.gene57045:CDS | 45.0% | |
| TGCCCATGGTATGAATCGTA+TGG | - | chr1.4:45643924-45643943 | None:intergenic | 45.0% | |
| TGGATGTAGTTGTTCCTTGG+TGG | + | chr1.4:45640349-45640368 | MS.gene57045:CDS | 45.0% | |
| TGTTCTTGGGAGACTCTGTA+GGG | - | chr1.4:45641150-45641169 | None:intergenic | 45.0% | |
| TTCAACAAATCCCTCGGAGA+TGG | - | chr1.4:45640317-45640336 | None:intergenic | 45.0% | |
| TTGTTCTTGGGAGACTCTGT+AGG | - | chr1.4:45641151-45641170 | None:intergenic | 45.0% | |
| TTTGAATGAGGAGTTGGAGG+AGG | + | chr1.4:45640532-45640551 | MS.gene57045:CDS | 45.0% | |
| ! | AGCACAGGTTGTGTTACTGA+AGG | + | chr1.4:45641489-45641508 | MS.gene57045:CDS | 45.0% |
| ! | ATAAAGCACCCAACATGCAC+TGG | + | chr1.4:45642638-45642657 | MS.gene57045:intron | 45.0% |
| ! | ATCCTGCACAGTATTGAGGA+GGG | + | chr1.4:45643199-45643218 | MS.gene57045:intron | 45.0% |
| ! | ATGTTGCCGGTGTTAGAAAG+AGG | - | chr1.4:45642850-45642869 | None:intergenic | 45.0% |
| ! | CAGAGGAAAATTTTCTCGCG+TGG | - | chr1.4:45641081-45641100 | None:intergenic | 45.0% |
| ! | TTTGAGGTTGCAGAGGGAAA+AGG | + | chr1.4:45640601-45640620 | MS.gene57045:CDS | 45.0% |
| !! | AAAGGAGGGTATTCGTATGG+AGG | - | chr1.4:45640839-45640858 | None:intergenic | 45.0% |
| !! | GTATGGCATTGGCTGGAATT+GGG | - | chr1.4:45643868-45643887 | None:intergenic | 45.0% |
| !! | TATGGCATTGGCTGGAATTG+GGG | - | chr1.4:45643867-45643886 | None:intergenic | 45.0% |
| !! | TGAACCTTTAGAGCGAGCAA+GGG | - | chr1.4:45641849-45641868 | None:intergenic | 45.0% |
| !! | TGTATGGCATTGGCTGGAAT+TGG | - | chr1.4:45643869-45643888 | None:intergenic | 45.0% |
| !!! | CGATGATTTTGAGGTTGCAG+AGG | + | chr1.4:45640594-45640613 | MS.gene57045:CDS | 45.0% |
| ACCGCTCCCATGATTTATCG+CGG | + | chr1.4:45643826-45643845 | MS.gene57045:CDS | 50.0% | |
| ATCACCTTCGACCTCATCCT+CGG | - | chr1.4:45640801-45640820 | None:intergenic | 50.0% | |
| ATCTCCCTTGCTCGCTCTAA+AGG | + | chr1.4:45641842-45641861 | MS.gene57045:intron | 50.0% | |
| CCATACACGAACACACCAAG+GGG | + | chr1.4:45643882-45643901 | MS.gene57045:CDS | 50.0% | |
| CGGAAAAAGTTCCATCTCCG+AGG | + | chr1.4:45640303-45640322 | MS.gene57045:CDS | 50.0% | |
| GAAAACTCCCACTTACAGCC+AGG | + | chr1.4:45640985-45641004 | MS.gene57045:CDS | 50.0% | |
| GCAACCAGTCCAAAGGAATC+AGG | + | chr1.4:45641349-45641368 | MS.gene57045:CDS | 50.0% | |
| GCCATACACGAACACACCAA+GGG | + | chr1.4:45643881-45643900 | MS.gene57045:CDS | 50.0% | |
| GCCCACCGAAATTGATACGA+AGG | - | chr1.4:45642795-45642814 | None:intergenic | 50.0% | |
| GGATCCCCGCGATAAATCAT+GGG | - | chr1.4:45643835-45643854 | None:intergenic | 50.0% | |
| GGCTTTACAGGTTCCAAAGC+TGG | + | chr1.4:45641310-45641329 | MS.gene57045:CDS | 50.0% | |
| GGGGGAAGATCAGTATCCAA+AGG | - | chr1.4:45641916-45641935 | None:intergenic | 50.0% | |
| GGGTCACAAGGTCGTGAATT+GGG | + | chr1.4:45643220-45643239 | MS.gene57045:intron | 50.0% | |
| GGTGTGTTCGTGTATGGCAT+TGG | - | chr1.4:45643879-45643898 | None:intergenic | 50.0% | |
| GTCGCTTACGTGTGAAGTTC+AGG | + | chr1.4:45640742-45640761 | MS.gene57045:CDS | 50.0% | |
| GTGTGTGTGTGTGTGTGATC+TGG | + | chr1.4:45641989-45642008 | MS.gene57045:intron | 50.0% | |
| TCAGGCACTTGAGGCTGATA+GGG | + | chr1.4:45641426-45641445 | MS.gene57045:CDS | 50.0% | |
| TCCTCTGACTCAGCAACGTT+CGG | + | chr1.4:45641094-45641113 | MS.gene57045:CDS | 50.0% | |
| TCGAACCTAAGACCTTGAGG+AGG | - | chr1.4:45642768-45642787 | None:intergenic | 50.0% | |
| TGCCATACACGAACACACCA+AGG | + | chr1.4:45643880-45643899 | MS.gene57045:CDS | 50.0% | |
| TGTAAAGGATGGCAGTGCCA+TGG | - | chr1.4:45642300-45642319 | None:intergenic | 50.0% | |
| TTCAGGCACTTGAGGCTGAT+AGG | + | chr1.4:45641425-45641444 | MS.gene57045:CDS | 50.0% | |
| TTGTAGTGTGCTCCTCCTCA+AGG | + | chr1.4:45642753-45642772 | MS.gene57045:intron | 50.0% | |
| ! | AGTATTGAGGAGGGGTCACA+AGG | + | chr1.4:45643208-45643227 | MS.gene57045:intron | 50.0% |
| ! | AGTGCCATGGCGTTTTATGG+TGG | - | chr1.4:45642287-45642306 | None:intergenic | 50.0% |
| ! | CTCGCGTGGCTTGTCAAATT+TGG | - | chr1.4:45641067-45641086 | None:intergenic | 50.0% |
| ! | GATCCTGCACAGTATTGAGG+AGG | + | chr1.4:45643198-45643217 | MS.gene57045:intron | 50.0% |
| ! | GCACCGGATAATGGCTTTAC+AGG | + | chr1.4:45641298-45641317 | MS.gene57045:CDS | 50.0% |
| ! | TCCTGCACAGTATTGAGGAG+GGG | + | chr1.4:45643200-45643219 | MS.gene57045:intron | 50.0% |
| ! | TTGAGGAGGAGCACACTACA+AGG | - | chr1.4:45642754-45642773 | None:intergenic | 50.0% |
| !! | ATGGCATTGGCTGGAATTGG+GGG | - | chr1.4:45643866-45643885 | None:intergenic | 50.0% |
| !! | CTGAACCTTTAGAGCGAGCA+AGG | - | chr1.4:45641850-45641869 | None:intergenic | 50.0% |
| !! | GACAAGTACCGAGATCTTGC+AGG | - | chr1.4:45641574-45641593 | None:intergenic | 50.0% |
| !! | TGTTCGTGTATGGCATTGGC+TGG | - | chr1.4:45643875-45643894 | None:intergenic | 50.0% |
| !! | TTTTGGGTACACCGAGGATG+AGG | + | chr1.4:45640787-45640806 | MS.gene57045:CDS | 50.0% |
| !!! | GATGAGTTTTGGGTACACCG+AGG | + | chr1.4:45640781-45640800 | MS.gene57045:CDS | 50.0% |
| AACTCCCACTTACAGCCAGG+TGG | + | chr1.4:45640988-45641007 | MS.gene57045:CDS | 55.0% | |
| ACCATCCACCTGGCTGTAAG+TGG | - | chr1.4:45640996-45641015 | None:intergenic | 55.0% | |
| ACCCCTCCTCAATACTGTGC+AGG | - | chr1.4:45643204-45643223 | None:intergenic | 55.0% | |
| ACCGAACGTTGCTGAGTCAG+AGG | - | chr1.4:45641098-45641117 | None:intergenic | 55.0% | |
| CATGAGGCTTCAGGCACTTG+AGG | + | chr1.4:45641417-45641436 | MS.gene57045:CDS | 55.0% | |
| CATTGCCTCATTCGCAGCTG+TGG | - | chr1.4:45640573-45640592 | None:intergenic | 55.0% | |
| CCATCCACCTGGCTGTAAGT+GGG | - | chr1.4:45640995-45641014 | None:intergenic | 55.0% | |
| CCCGCGATAAATCATGGGAG+CGG | - | chr1.4:45643830-45643849 | None:intergenic | 55.0% | |
| CCGCTCCCATGATTTATCGC+GGG | + | chr1.4:45643827-45643846 | MS.gene57045:CDS | 55.0% | |
| CCTCTTTAACCCGCTTGGGT+TGG | + | chr1.4:45642707-45642726 | MS.gene57045:intron | 55.0% | |
| CGAGCAAGCCTGCAAGATCT+CGG | + | chr1.4:45641563-45641582 | MS.gene57045:CDS | 55.0% | |
| CGCTCCCATGATTTATCGCG+GGG | + | chr1.4:45643828-45643847 | MS.gene57045:CDS | 55.0% | |
| CTGACTCAGCAACGTTCGGT+GGG | + | chr1.4:45641098-45641117 | MS.gene57045:CDS | 55.0% | |
| GAGGTTGCAGAGGGAAAAGG+CGG | + | chr1.4:45640604-45640623 | MS.gene57045:CDS | 55.0% | |
| GCGATAAATCATGGGAGCGG+TGG | - | chr1.4:45643827-45643846 | None:intergenic | 55.0% | |
| GGGAGACTCTGTAGGGAACT+CGG | - | chr1.4:45641143-45641162 | None:intergenic | 55.0% | |
| GGGATCCCCGCGATAAATCA+TGG | - | chr1.4:45643836-45643855 | None:intergenic | 55.0% | |
| GGGGTCACAAGGTCGTGAAT+TGG | + | chr1.4:45643219-45643238 | MS.gene57045:intron | 55.0% | |
| GTGCTCCTCCTCAAGGTCTT+AGG | + | chr1.4:45642760-45642779 | MS.gene57045:intron | 55.0% | |
| TACACCGAGGATGAGGTCGA+AGG | + | chr1.4:45640794-45640813 | MS.gene57045:CDS | 55.0% | |
| TACACGAACACACCAAGGGG+TGG | + | chr1.4:45643885-45643904 | MS.gene57045:CDS | 55.0% | |
| TCTGACTCAGCAACGTTCGG+TGG | + | chr1.4:45641097-45641116 | MS.gene57045:CDS | 55.0% | |
| TGCTTCCACAGCTGCGAATG+AGG | + | chr1.4:45640565-45640584 | MS.gene57045:CDS | 55.0% | |
| TTTACGGTCTTGCCACCCCT+TGG | - | chr1.4:45643900-45643919 | None:intergenic | 55.0% | |
| ! | CCCCTTGGTGTGTTCGTGTA+TGG | - | chr1.4:45643885-45643904 | None:intergenic | 55.0% |
| ! | GGCAGTGCCATGGCGTTTTA+TGG | - | chr1.4:45642290-45642309 | None:intergenic | 55.0% |
| !! | CATTCTGGGGCACCGGATAA+TGG | + | chr1.4:45641289-45641308 | MS.gene57045:CDS | 55.0% |
| !! | CCAACCCAAGCGGGTTAAAG+AGG | - | chr1.4:45642710-45642729 | None:intergenic | 55.0% |
| !! | CTCTGTTCATTCTGGGGCAC+CGG | + | chr1.4:45641282-45641301 | MS.gene57045:CDS | 55.0% |
| !! | TTAACCCGCTTGGGTTGGTC+CGG | + | chr1.4:45642712-45642731 | MS.gene57045:intron | 55.0% |
| AGGACCCAAGCCAACACCTC+CGG | - | chr1.4:45642734-45642753 | None:intergenic | 60.0% | |
| CCCACTTACAGCCAGGTGGA+TGG | + | chr1.4:45640992-45641011 | MS.gene57045:CDS | 60.0% | |
| ! | CTGGAATTGGGGGTGCAGCT+GGG | - | chr1.4:45643856-45643875 | None:intergenic | 60.0% |
| ! | TACCTGTGTCGTCGGTTGCG+CGG | + | chr1.4:45640441-45640460 | MS.gene57045:CDS | 60.0% |
| !! | TGGTCCGGAGGTGTTGGCTT+GGG | + | chr1.4:45642727-45642746 | MS.gene57045:intron | 60.0% |
| !! | TTGGGTTGGTCCGGAGGTGT+TGG | + | chr1.4:45642721-45642740 | MS.gene57045:intron | 60.0% |
| !! | TTGGTCCGGAGGTGTTGGCT+TGG | + | chr1.4:45642726-45642745 | MS.gene57045:intron | 60.0% |
| ACCTCCGGACCAACCCAAGC+GGG | - | chr1.4:45642719-45642738 | None:intergenic | 65.0% | |
| CACCTCCGGACCAACCCAAG+CGG | - | chr1.4:45642720-45642739 | None:intergenic | 65.0% | |
| ! | ACCTGTGTCGTCGGTTGCGC+GGG | + | chr1.4:45640442-45640461 | MS.gene57045:CDS | 65.0% |
| ! | GCTGGAATTGGGGGTGCAGC+TGG | - | chr1.4:45643857-45643876 | None:intergenic | 65.0% |
| ACCCGCGCAACCGACGACAC+AGG | - | chr1.4:45640446-45640465 | None:intergenic | 70.0% | |
| !! | ACCCGCTTGGGTTGGTCCGG+AGG | + | chr1.4:45642715-45642734 | MS.gene57045:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 45640296 | 45643953 | 45640296 | ID=MS.gene57045 |
| chr1.4 | mRNA | 45640296 | 45643953 | 45640296 | ID=MS.gene57045.t1;Parent=MS.gene57045 |
| chr1.4 | exon | 45640296 | 45641603 | 45640296 | ID=MS.gene57045.t1.exon1;Parent=MS.gene57045.t1 |
| chr1.4 | CDS | 45640296 | 45641603 | 45640296 | ID=cds.MS.gene57045.t1;Parent=MS.gene57045.t1 |
| chr1.4 | exon | 45643738 | 45643953 | 45643738 | ID=MS.gene57045.t1.exon2;Parent=MS.gene57045.t1 |
| chr1.4 | CDS | 45643738 | 45643953 | 45643738 | ID=cds.MS.gene57045.t1;Parent=MS.gene57045.t1 |
| Gene Sequence |
| Protein sequence |
