Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46447.t1 | XP_013467758.1 | 97 | 438 | 12 | 1 | 1 | 438 | 1 | 437 | 1.40E-236 | 828.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46447.t1 | Q9FG14 | 47.9 | 476 | 205 | 13 | 1 | 438 | 1 | 471 | 6.2e-92 | 339.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46447.t1 | A0A072VUM2 | 97.0 | 438 | 12 | 1 | 1 | 438 | 1 | 437 | 1.0e-236 | 828.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049822 | MS.gene46447 | 0.835592 | 1.53E-56 | -1.69E-46 |
| MS.gene050114 | MS.gene46447 | 0.813348 | 2.68E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene46447 | 0.863343 | 2.66E-64 | -1.69E-46 |
| MS.gene050838 | MS.gene46447 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene46447 | 0.81494 | 1.19E-51 | -1.69E-46 |
| MS.gene051756 | MS.gene46447 | 0.805567 | 1.25E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene46447 | 0.813874 | 2.05E-51 | -1.69E-46 |
| MS.gene052527 | MS.gene46447 | 0.818246 | 2.17E-52 | -1.69E-46 |
| MS.gene053167 | MS.gene46447 | 0.804116 | 2.52E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene46447 | 0.827182 | 1.80E-54 | -1.69E-46 |
| MS.gene05344 | MS.gene46447 | -0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene46447 | 0.811023 | 8.61E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene46447 | 0.832972 | 6.97E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene46447 | 0.80301 | 4.28E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene46447 | 0.808456 | 3.07E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene46447 | 0.816819 | 4.54E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene46447 | 0.802478 | 5.50E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene46447 | 0.813965 | 1.96E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene46447 | 0.801272 | 9.74E-49 | -1.69E-46 |
| MS.gene058438 | MS.gene46447 | 0.813897 | 2.03E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene46447 | 0.813971 | 1.95E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene46447 | 0.822339 | 2.50E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene46447 | 0.809855 | 1.54E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene46447 | 0.831213 | 1.90E-55 | -1.69E-46 |
| MS.gene059050 | MS.gene46447 | 0.817269 | 3.60E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene46447 | 0.821779 | 3.37E-53 | -1.69E-46 |
| MS.gene059360 | MS.gene46447 | 0.800276 | 1.55E-48 | -1.69E-46 |
| MS.gene060084 | MS.gene46447 | 0.819478 | 1.14E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene46447 | 0.812201 | 4.78E-51 | -1.69E-46 |
| MS.gene060563 | MS.gene46447 | 0.808635 | 2.81E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene46447 | 0.824593 | 7.42E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene46447 | 0.820208 | 7.75E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007068 | MS.gene46447 | PPI |
| MS.gene46447 | MS.gene39222 | PPI |
| MS.gene46447 | MS.gene051902 | PPI |
| MS.gene57045 | MS.gene46447 | PPI |
| MS.gene46447 | MS.gene034642 | PPI |
| MS.gene46447 | MS.gene23060 | PPI |
| MS.gene23060 | MS.gene46447 | PPI |
| MS.gene034642 | MS.gene46447 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46447.t1 | MTR_1g054835 | 97.032 | 438 | 12 | 1 | 1 | 438 | 1 | 437 | 0.0 | 886 |
| MS.gene46447.t1 | MTR_7g107000 | 61.839 | 435 | 138 | 9 | 14 | 438 | 16 | 432 | 4.99e-171 | 488 |
| MS.gene46447.t1 | MTR_1g070350 | 46.789 | 109 | 56 | 1 | 57 | 163 | 522 | 630 | 1.15e-19 | 92.4 |
| MS.gene46447.t1 | MTR_4g130400 | 45.283 | 106 | 58 | 0 | 61 | 166 | 4 | 109 | 1.66e-17 | 84.7 |
| MS.gene46447.t1 | MTR_4g093150 | 35.484 | 124 | 77 | 1 | 42 | 165 | 55 | 175 | 3.06e-14 | 72.0 |
| MS.gene46447.t1 | MTR_5g078300 | 46.053 | 76 | 41 | 0 | 66 | 141 | 620 | 695 | 1.52e-12 | 70.1 |
| MS.gene46447.t1 | MTR_0168s0060 | 33.333 | 168 | 94 | 4 | 29 | 180 | 293 | 458 | 3.96e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46447.t1 | AT5G06560 | 52.621 | 477 | 181 | 15 | 1 | 438 | 1 | 471 | 4.45e-144 | 421 |
| MS.gene46447.t1 | AT3G11850 | 43.468 | 444 | 206 | 12 | 32 | 438 | 22 | 457 | 5.44e-102 | 313 |
| MS.gene46447.t1 | AT3G11850 | 43.468 | 444 | 206 | 12 | 32 | 438 | 22 | 457 | 5.44e-102 | 313 |
| MS.gene46447.t1 | AT3G54740 | 40.558 | 466 | 171 | 12 | 1 | 438 | 1 | 388 | 1.60e-87 | 274 |
| MS.gene46447.t1 | AT3G54740 | 40.558 | 466 | 171 | 12 | 1 | 438 | 1 | 388 | 1.60e-87 | 274 |
| MS.gene46447.t1 | AT3G54740 | 40.558 | 466 | 171 | 12 | 1 | 438 | 1 | 388 | 1.60e-87 | 274 |
| MS.gene46447.t1 | AT3G54740 | 40.558 | 466 | 171 | 12 | 1 | 438 | 1 | 388 | 1.60e-87 | 274 |
| MS.gene46447.t1 | AT3G54740 | 40.842 | 404 | 141 | 11 | 55 | 438 | 15 | 340 | 3.16e-77 | 245 |
| MS.gene46447.t1 | AT3G54740 | 40.842 | 404 | 141 | 11 | 55 | 438 | 15 | 340 | 3.16e-77 | 245 |
| MS.gene46447.t1 | AT3G54740 | 40.842 | 404 | 141 | 11 | 55 | 438 | 15 | 340 | 3.16e-77 | 245 |
| MS.gene46447.t1 | AT3G54740 | 40.842 | 404 | 141 | 11 | 55 | 438 | 15 | 340 | 3.16e-77 | 245 |
| MS.gene46447.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 3.40e-20 | 91.3 |
| MS.gene46447.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 3.40e-20 | 91.3 |
| MS.gene46447.t1 | AT4G30830 | 47.826 | 92 | 48 | 0 | 76 | 167 | 28 | 119 | 5.73e-20 | 91.3 |
| MS.gene46447.t1 | AT4G30830 | 47.826 | 92 | 48 | 0 | 76 | 167 | 28 | 119 | 5.73e-20 | 91.3 |
| MS.gene46447.t1 | AT1G70750 | 27.221 | 349 | 203 | 10 | 73 | 411 | 423 | 730 | 5.82e-19 | 90.1 |
| MS.gene46447.t1 | AT5G16720 | 40.833 | 120 | 71 | 0 | 46 | 165 | 340 | 459 | 1.17e-18 | 89.0 |
| MS.gene46447.t1 | AT5G57830 | 47.321 | 112 | 59 | 0 | 66 | 177 | 19 | 130 | 5.57e-18 | 85.9 |
| MS.gene46447.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 4.97e-17 | 84.3 |
| MS.gene46447.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 4.97e-17 | 84.3 |
| MS.gene46447.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.20e-15 | 80.1 |
| MS.gene46447.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.20e-15 | 80.1 |
| MS.gene46447.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.20e-15 | 80.1 |
| MS.gene46447.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.20e-15 | 80.1 |
| MS.gene46447.t1 | AT1G74830 | 41.739 | 115 | 64 | 1 | 59 | 173 | 301 | 412 | 1.12e-14 | 76.6 |
| MS.gene46447.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 1.59e-13 | 70.9 |
| MS.gene46447.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 1.59e-13 | 70.9 |
| MS.gene46447.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 4.76e-12 | 68.2 |
| MS.gene46447.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 4.76e-12 | 68.2 |
| MS.gene46447.t1 | AT1G18990 | 38.621 | 145 | 80 | 3 | 19 | 161 | 262 | 399 | 7.37e-12 | 67.8 |
| MS.gene46447.t1 | AT1G04890 | 41.346 | 104 | 47 | 1 | 71 | 160 | 105 | 208 | 1.10e-11 | 66.6 |
Find 93 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGCGTGGCTTGTCAAATT+TGG | 0.173314 | 1.2:-43404839 | None:intergenic |
| CTTAAACTTGTTATTGTTCT+TGG | 0.186369 | 1.2:-43404936 | None:intergenic |
| ACAATTGACTCTGTTCATTC+TGG | 0.200824 | 1.2:+43405049 | MS.gene46447:CDS |
| GAAGCACGATGAGTTTAAAT+TGG | 0.276035 | 1.2:+43404184 | MS.gene46447:CDS |
| AAACACAGGATGATGAGTTT+TGG | 0.300857 | 1.2:+43404545 | MS.gene46447:CDS |
| GCACCGGATAATGGCTTTAC+AGG | 0.308345 | 1.2:+43405073 | MS.gene46447:CDS |
| TCAGGAGGAACTTATGTCTT+TGG | 0.312375 | 1.2:+43404460 | MS.gene46447:CDS |
| TGATGATTCCCTGATTCCTT+TGG | 0.314429 | 1.2:-43405133 | None:intergenic |
| GTCGCTTACGTGTGAAGTTC+AGG | 0.334893 | 1.2:+43404517 | MS.gene46447:CDS |
| TTCAAATTTGAATTGTCCTC+TGG | 0.337959 | 1.2:-43404977 | None:intergenic |
| AAATGTAATGTCATGTATAA+TGG | 0.343360 | 1.2:+43404635 | MS.gene46447:CDS |
| CATTCTGGGGCACCGGATAA+TGG | 0.354097 | 1.2:+43405064 | MS.gene46447:CDS |
| TTAAACTTGTTATTGTTCTT+GGG | 0.360855 | 1.2:-43404935 | None:intergenic |
| TATGCAGCAGAGAACGATTC+AGG | 0.369549 | 1.2:+43404283 | MS.gene46447:CDS |
| GAAGCTTTACATGAGGCTTC+AGG | 0.375689 | 1.2:+43405183 | MS.gene46447:CDS |
| TCCTCTGACTCAGCAACGTT+CGG | 0.376250 | 1.2:+43404869 | MS.gene46447:CDS |
| GCAACCAGTCCAAAGGAATC+AGG | 0.378139 | 1.2:+43405124 | MS.gene46447:CDS |
| AAGCTCCTCAAACGGTCATT+AGG | 0.378165 | 1.2:-43404713 | None:intergenic |
| GACAAGTACCGAGATCTTGC+AGG | 0.390060 | 1.2:-43405346 | None:intergenic |
| ATCATCGAAACCTCCAGCTT+TGG | 0.392724 | 1.2:-43405098 | None:intergenic |
| GTTTGAGGAGCTTGGAGAAT+AGG | 0.397127 | 1.2:+43404723 | MS.gene46447:CDS |
| TTCAGGCACTTGAGGCTGAT+AGG | 0.398288 | 1.2:+43405200 | MS.gene46447:CDS |
| CATGTAAAGCTTCTTAATGT+AGG | 0.398593 | 1.2:-43405173 | None:intergenic |
| GGCTTTACAGGTTCCAAAGC+TGG | 0.408092 | 1.2:+43405085 | MS.gene46447:CDS |
| GGTGGGATGTGTAAAGAAAT+AGG | 0.411105 | 1.2:+43404890 | MS.gene46447:CDS |
| CAATTGACTCTGTTCATTCT+GGG | 0.412467 | 1.2:+43405050 | MS.gene46447:CDS |
| ACCTGTGTCGTCGGTTGCGC+GGG | 0.422138 | 1.2:+43404217 | MS.gene46447:CDS |
| GGAGAATAGGATTTCTCAAA+TGG | 0.426445 | 1.2:+43404736 | MS.gene46447:CDS |
| TAATGACCGTTTGAGGAGCT+TGG | 0.436236 | 1.2:+43404715 | MS.gene46447:CDS |
| GGATTTGAATGAGGAGTTGG+AGG | 0.445102 | 1.2:+43404304 | MS.gene46447:CDS |
| ATTCCCTGATTCCTTTGGAC+TGG | 0.453675 | 1.2:-43405128 | None:intergenic |
| CTCTGTTCATTCTGGGGCAC+CGG | 0.453986 | 1.2:+43405057 | MS.gene46447:CDS |
| GGAGAAAATGACGCATGATC+AGG | 0.455281 | 1.2:+43404442 | MS.gene46447:CDS |
| TTGTTGAAATGTTGTGATTG+TGG | 0.462676 | 1.2:+43404104 | MS.gene46447:CDS |
| TCAGGATTTGAATGAGGAGT+TGG | 0.463110 | 1.2:+43404301 | MS.gene46447:CDS |
| TTTGAGGTTGCAGAGGGAAA+AGG | 0.465476 | 1.2:+43404376 | MS.gene46447:CDS |
| TTTGAATGAGGAGTTGGAGG+AGG | 0.470668 | 1.2:+43404307 | MS.gene46447:CDS |
| GATATTGAGAAATATGCATT+TGG | 0.470801 | 1.2:+43404683 | MS.gene46447:CDS |
| TTGTGGATGTAGTTGTTCCT+TGG | 0.472863 | 1.2:+43404121 | MS.gene46447:CDS |
| TGCTTCCACAGCTGCGAATG+AGG | 0.477326 | 1.2:+43404340 | MS.gene46447:CDS |
| GAACAATAACAAGTTTAAGA+AGG | 0.477803 | 1.2:+43404940 | MS.gene46447:CDS |
| GTTACGGAGAAAGTAATTGT+TGG | 0.483998 | 1.2:+43404809 | MS.gene46447:CDS |
| TTTAAAGGAGGGTATTCGTA+TGG | 0.487165 | 1.2:-43404614 | None:intergenic |
| GGAAAAGGCGGAAGTTCAAA+TGG | 0.490761 | 1.2:+43404391 | MS.gene46447:CDS |
| TGGATGTAGTTGTTCCTTGG+TGG | 0.490768 | 1.2:+43404124 | MS.gene46447:CDS |
| GAACCTGTAAAGCCATTATC+CGG | 0.491366 | 1.2:-43405076 | None:intergenic |
| GGACAATTCAAATTTGAAGA+AGG | 0.492097 | 1.2:+43404982 | MS.gene46447:CDS |
| ACCATCCACCTGGCTGTAAG+TGG | 0.503511 | 1.2:-43404768 | None:intergenic |
| TCAGGCACTTGAGGCTGATA+GGG | 0.504864 | 1.2:+43405201 | MS.gene46447:CDS |
| TTGTTCTTGGGAGACTCTGT+AGG | 0.505523 | 1.2:-43404923 | None:intergenic |
| CATGAGGCTTCAGGCACTTG+AGG | 0.506019 | 1.2:+43405192 | MS.gene46447:CDS |
| TACCTGTGTCGTCGGTTGCG+CGG | 0.506467 | 1.2:+43404216 | MS.gene46447:CDS |
| AGCACAGGTTGTGTTACTAA+AGG | 0.529757 | 1.2:+43405264 | MS.gene46447:CDS |
| TCTGACTCAGCAACGTTCGG+TGG | 0.530457 | 1.2:+43404872 | MS.gene46447:CDS |
| TGTTCTTGGGAGACTCTGTA+GGG | 0.530579 | 1.2:-43404922 | None:intergenic |
| ATGTAAAGCTTCTTAATGTA+GGG | 0.531958 | 1.2:-43405172 | None:intergenic |
| ATCACCTTCGACCTCATCCT+CGG | 0.533257 | 1.2:-43404573 | None:intergenic |
| AACGATTCAGGATTTGAATG+AGG | 0.533822 | 1.2:+43404295 | MS.gene46447:CDS |
| AAACTCCTAATGACCGTTTG+AGG | 0.535504 | 1.2:+43404708 | MS.gene46447:CDS |
| CATTGCCTCATTCGCAGCTG+TGG | 0.537747 | 1.2:-43404345 | None:intergenic |
| TTCAACAAATCCCTCGGAGA+TGG | 0.542740 | 1.2:-43404089 | None:intergenic |
| CAACCAGTCCAAAGGAATCA+GGG | 0.548648 | 1.2:+43405125 | MS.gene46447:CDS |
| AAAGGAGGGTATTCGTATGG+AGG | 0.549905 | 1.2:-43404611 | None:intergenic |
| TGATAGGGAATCAATGAGGC+AGG | 0.551938 | 1.2:+43405216 | MS.gene46447:CDS |
| CGAGCAAGCCTGCAAGATCT+CGG | 0.551994 | 1.2:+43405338 | MS.gene46447:CDS |
| GGGAGACTCTGTAGGGAACT+CGG | 0.562340 | 1.2:-43404915 | None:intergenic |
| TATTCTCCAAGCTCCTCAAA+CGG | 0.563369 | 1.2:-43404721 | None:intergenic |
| ACCGAACGTTGCTGAGTCAG+AGG | 0.583019 | 1.2:-43404870 | None:intergenic |
| CCCACTTACAGCCAGGTGGA+TGG | 0.583532 | 1.2:+43404767 | MS.gene46447:CDS |
| CTGACTCAGCAACGTTCGGT+GGG | 0.585081 | 1.2:+43404873 | MS.gene46447:CDS |
| ATGTGTTGTGTTACGTGAGA+TGG | 0.587855 | 1.2:+43404256 | MS.gene46447:CDS |
| CAATAAAATCACCATCCACC+TGG | 0.588402 | 1.2:-43404778 | None:intergenic |
| GAAAACTCCCACTTACAGCC+AGG | 0.590810 | 1.2:+43404760 | MS.gene46447:CDS |
| AAGGTAGATAATGCTTCAGA+AGG | 0.602096 | 1.2:+43405001 | MS.gene46447:CDS |
| AATGAGCACAGATAAAGCAC+AGG | 0.607100 | 1.2:+43405249 | MS.gene46447:CDS |
| CAACATTTCAACAAATCCCT+CGG | 0.610770 | 1.2:-43404095 | None:intergenic |
| TTTACAGGTTCCAAAGCTGG+AGG | 0.613417 | 1.2:+43405088 | MS.gene46447:CDS |
| AATTGACTCTGTTCATTCTG+GGG | 0.616386 | 1.2:+43405051 | MS.gene46447:CDS |
| TAATGTCATGTATAATGGCA+TGG | 0.619732 | 1.2:+43404640 | MS.gene46447:CDS |
| ACATTAAGAAGCTTTACATG+AGG | 0.620076 | 1.2:+43405176 | MS.gene46447:CDS |
| TGATTATGCAACCAGTCCAA+AGG | 0.622802 | 1.2:+43405117 | MS.gene46447:CDS |
| TTCAGAACATTGTTCCACCA+AGG | 0.625495 | 1.2:-43404138 | None:intergenic |
| AATGGATGCGATCTGTTAAG+CGG | 0.631622 | 1.2:+43404162 | MS.gene46447:CDS |
| ACCCGCGCAACCGACGACAC+AGG | 0.633336 | 1.2:-43404218 | None:intergenic |
| GAAAATGACGCATGATCAGG+AGG | 0.634038 | 1.2:+43404445 | MS.gene46447:CDS |
| CCATCCACCTGGCTGTAAGT+GGG | 0.639457 | 1.2:-43404767 | None:intergenic |
| TAGTGAATTACCTGTGTCGT+CGG | 0.646306 | 1.2:+43404208 | MS.gene46447:CDS |
| GAGGTTGCAGAGGGAAAAGG+CGG | 0.649166 | 1.2:+43404379 | MS.gene46447:CDS |
| AAGTTCAGGCTTATAAACAC+AGG | 0.657321 | 1.2:+43404531 | MS.gene46447:CDS |
| GGATTATTTCTCTCAACCAG+AGG | 0.660219 | 1.2:+43404961 | MS.gene46447:CDS |
| TACACCGAGGATGAGGTCGA+AGG | 0.669244 | 1.2:+43404569 | MS.gene46447:CDS |
| AACTCCCACTTACAGCCAGG+TGG | 0.685414 | 1.2:+43404763 | MS.gene46447:CDS |
| AGGCTGATAGGGAATCAATG+AGG | 0.730909 | 1.2:+43405212 | MS.gene46447:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTGGAAAAAATGTTA+CGG | + | chr1.2:43404793-43404812 | MS.gene46447:CDS | 15.0% |
| !! | AAATGTAATGTCATGTATAA+TGG | + | chr1.2:43404635-43404654 | MS.gene46447:CDS | 20.0% |
| !!! | TACATGACATTACATTTTAA+AGG | - | chr1.2:43404632-43404651 | None:intergenic | 20.0% |
| !!! | TTAAACTTGTTATTGTTCTT+GGG | - | chr1.2:43404938-43404957 | None:intergenic | 20.0% |
| ! | ATGTAAAGCTTCTTAATGTA+GGG | - | chr1.2:43405175-43405194 | None:intergenic | 25.0% |
| ! | GAACAATAACAAGTTTAAGA+AGG | + | chr1.2:43404940-43404959 | MS.gene46447:CDS | 25.0% |
| ! | GATATTGAGAAATATGCATT+TGG | + | chr1.2:43404683-43404702 | MS.gene46447:CDS | 25.0% |
| !!! | ATGACATTACATTTTAAAGG+AGG | - | chr1.2:43404629-43404648 | None:intergenic | 25.0% |
| !!! | CTTAAACTTGTTATTGTTCT+TGG | - | chr1.2:43404939-43404958 | None:intergenic | 25.0% |
| !!! | TGACATTACATTTTAAAGGA+GGG | - | chr1.2:43404628-43404647 | None:intergenic | 25.0% |
| ACATTAAGAAGCTTTACATG+AGG | + | chr1.2:43405176-43405195 | MS.gene46447:CDS | 30.0% | |
| CATGTAAAGCTTCTTAATGT+AGG | - | chr1.2:43405176-43405195 | None:intergenic | 30.0% | |
| GGACAATTCAAATTTGAAGA+AGG | + | chr1.2:43404982-43405001 | MS.gene46447:CDS | 30.0% | |
| TAATGTCATGTATAATGGCA+TGG | + | chr1.2:43404640-43404659 | MS.gene46447:CDS | 30.0% | |
| TTCAAATTTGAATTGTCCTC+TGG | - | chr1.2:43404980-43404999 | None:intergenic | 30.0% | |
| TTGTTGAAATGTTGTGATTG+TGG | + | chr1.2:43404104-43404123 | MS.gene46447:CDS | 30.0% | |
| ! | TCGGTACTTGTCAATTTTTA+AGG | + | chr1.2:43405357-43405376 | MS.gene46447:CDS | 30.0% |
| !! | TGGAACAATGTTCTGAAAAA+TGG | + | chr1.2:43404144-43404163 | MS.gene46447:CDS | 30.0% |
| AACGATTCAGGATTTGAATG+AGG | + | chr1.2:43404295-43404314 | MS.gene46447:CDS | 35.0% | |
| AAGGTAGATAATGCTTCAGA+AGG | + | chr1.2:43405001-43405020 | MS.gene46447:CDS | 35.0% | |
| AAGTTCAGGCTTATAAACAC+AGG | + | chr1.2:43404531-43404550 | MS.gene46447:CDS | 35.0% | |
| CAACATTTCAACAAATCCCT+CGG | - | chr1.2:43404098-43404117 | None:intergenic | 35.0% | |
| GAAGCACGATGAGTTTAAAT+TGG | + | chr1.2:43404184-43404203 | MS.gene46447:CDS | 35.0% | |
| GGAGAATAGGATTTCTCAAA+TGG | + | chr1.2:43404736-43404755 | MS.gene46447:CDS | 35.0% | |
| GTTACGGAGAAAGTAATTGT+TGG | + | chr1.2:43404809-43404828 | MS.gene46447:CDS | 35.0% | |
| ! | AAACACAGGATGATGAGTTT+TGG | + | chr1.2:43404545-43404564 | MS.gene46447:CDS | 35.0% |
| ! | AACACAGGATGATGAGTTTT+GGG | + | chr1.2:43404546-43404565 | MS.gene46447:CDS | 35.0% |
| ! | AATTGACTCTGTTCATTCTG+GGG | + | chr1.2:43405051-43405070 | MS.gene46447:CDS | 35.0% |
| ! | ACAATTGACTCTGTTCATTC+TGG | + | chr1.2:43405049-43405068 | MS.gene46447:CDS | 35.0% |
| ! | CAATTGACTCTGTTCATTCT+GGG | + | chr1.2:43405050-43405069 | MS.gene46447:CDS | 35.0% |
| ! | TCAATTTAAGCGTTTTGCAG+AGG | + | chr1.2:43404421-43404440 | MS.gene46447:CDS | 35.0% |
| !! | CTCGTACTCATTTTTCTTTG+CGG | - | chr1.2:43405322-43405341 | None:intergenic | 35.0% |
| !! | TTTAAAGGAGGGTATTCGTA+TGG | - | chr1.2:43404617-43404636 | None:intergenic | 35.0% |
| AAACTCCTAATGACCGTTTG+AGG | + | chr1.2:43404708-43404727 | MS.gene46447:CDS | 40.0% | |
| AATGAGCACAGATAAAGCAC+AGG | + | chr1.2:43405249-43405268 | MS.gene46447:CDS | 40.0% | |
| AATGGATGCGATCTGTTAAG+CGG | + | chr1.2:43404162-43404181 | MS.gene46447:CDS | 40.0% | |
| ATGTGTTGTGTTACGTGAGA+TGG | + | chr1.2:43404256-43404275 | MS.gene46447:CDS | 40.0% | |
| CAATAAAATCACCATCCACC+TGG | - | chr1.2:43404781-43404800 | None:intergenic | 40.0% | |
| GAACCTGTAAAGCCATTATC+CGG | - | chr1.2:43405079-43405098 | None:intergenic | 40.0% | |
| GGTGGGATGTGTAAAGAAAT+AGG | + | chr1.2:43404890-43404909 | MS.gene46447:CDS | 40.0% | |
| TAGTGAATTACCTGTGTCGT+CGG | + | chr1.2:43404208-43404227 | MS.gene46447:CDS | 40.0% | |
| TATTCTCCAAGCTCCTCAAA+CGG | - | chr1.2:43404724-43404743 | None:intergenic | 40.0% | |
| TCAGGAGGAACTTATGTCTT+TGG | + | chr1.2:43404460-43404479 | MS.gene46447:CDS | 40.0% | |
| TCAGGATTTGAATGAGGAGT+TGG | + | chr1.2:43404301-43404320 | MS.gene46447:CDS | 40.0% | |
| TGATGATTCCCTGATTCCTT+TGG | - | chr1.2:43405136-43405155 | None:intergenic | 40.0% | |
| TGATTATGCAACCAGTCCAA+AGG | + | chr1.2:43405117-43405136 | MS.gene46447:CDS | 40.0% | |
| TTCAGAACATTGTTCCACCA+AGG | - | chr1.2:43404141-43404160 | None:intergenic | 40.0% | |
| TTGTGGATGTAGTTGTTCCT+TGG | + | chr1.2:43404121-43404140 | MS.gene46447:CDS | 40.0% | |
| ! | AGCACAGGTTGTGTTACTAA+AGG | + | chr1.2:43405264-43405283 | MS.gene46447:CDS | 40.0% |
| ! | AGGCAATGTCGATGATTTTG+AGG | + | chr1.2:43404360-43404379 | MS.gene46447:CDS | 40.0% |
| ! | CAGGTGGATGGTGATTTTAT+TGG | + | chr1.2:43404779-43404798 | MS.gene46447:CDS | 40.0% |
| ! | GGATTATTTCTCTCAACCAG+AGG | + | chr1.2:43404961-43404980 | MS.gene46447:CDS | 40.0% |
| !!! | GATGATTTTGAGGTTGCAGA+GGG | + | chr1.2:43404370-43404389 | MS.gene46447:CDS | 40.0% |
| AAGCTCCTCAAACGGTCATT+AGG | - | chr1.2:43404716-43404735 | None:intergenic | 45.0% | |
| AGGCTGATAGGGAATCAATG+AGG | + | chr1.2:43405212-43405231 | MS.gene46447:CDS | 45.0% | |
| ATCATCGAAACCTCCAGCTT+TGG | - | chr1.2:43405101-43405120 | None:intergenic | 45.0% | |
| ATTCCCTGATTCCTTTGGAC+TGG | - | chr1.2:43405131-43405150 | None:intergenic | 45.0% | |
| CAACCAGTCCAAAGGAATCA+GGG | + | chr1.2:43405125-43405144 | MS.gene46447:CDS | 45.0% | |
| GAAAATGACGCATGATCAGG+AGG | + | chr1.2:43404445-43404464 | MS.gene46447:CDS | 45.0% | |
| GAAGCTTTACATGAGGCTTC+AGG | + | chr1.2:43405183-43405202 | MS.gene46447:CDS | 45.0% | |
| GGAAAAAGTTCCATCTCCGA+GGG | + | chr1.2:43404079-43404098 | MS.gene46447:CDS | 45.0% | |
| GGAAAAGGCGGAAGTTCAAA+TGG | + | chr1.2:43404391-43404410 | MS.gene46447:CDS | 45.0% | |
| GGAGAAAATGACGCATGATC+AGG | + | chr1.2:43404442-43404461 | MS.gene46447:CDS | 45.0% | |
| GGATTTGAATGAGGAGTTGG+AGG | + | chr1.2:43404304-43404323 | MS.gene46447:CDS | 45.0% | |
| GTTTGAGGAGCTTGGAGAAT+AGG | + | chr1.2:43404723-43404742 | MS.gene46447:CDS | 45.0% | |
| TAATGACCGTTTGAGGAGCT+TGG | + | chr1.2:43404715-43404734 | MS.gene46447:CDS | 45.0% | |
| TATGCAGCAGAGAACGATTC+AGG | + | chr1.2:43404283-43404302 | MS.gene46447:CDS | 45.0% | |
| TGATAGGGAATCAATGAGGC+AGG | + | chr1.2:43405216-43405235 | MS.gene46447:CDS | 45.0% | |
| TGGATGTAGTTGTTCCTTGG+TGG | + | chr1.2:43404124-43404143 | MS.gene46447:CDS | 45.0% | |
| TGTTCTTGGGAGACTCTGTA+GGG | - | chr1.2:43404925-43404944 | None:intergenic | 45.0% | |
| TTCAACAAATCCCTCGGAGA+TGG | - | chr1.2:43404092-43404111 | None:intergenic | 45.0% | |
| TTGTTCTTGGGAGACTCTGT+AGG | - | chr1.2:43404926-43404945 | None:intergenic | 45.0% | |
| TTTACAGGTTCCAAAGCTGG+AGG | + | chr1.2:43405088-43405107 | MS.gene46447:CDS | 45.0% | |
| TTTGAATGAGGAGTTGGAGG+AGG | + | chr1.2:43404307-43404326 | MS.gene46447:CDS | 45.0% | |
| ! | CAGAGGAAAATTTTCTCGCG+TGG | - | chr1.2:43404856-43404875 | None:intergenic | 45.0% |
| ! | TTTGAGGTTGCAGAGGGAAA+AGG | + | chr1.2:43404376-43404395 | MS.gene46447:CDS | 45.0% |
| !! | AAAGGAGGGTATTCGTATGG+AGG | - | chr1.2:43404614-43404633 | None:intergenic | 45.0% |
| !!! | CGATGATTTTGAGGTTGCAG+AGG | + | chr1.2:43404369-43404388 | MS.gene46447:CDS | 45.0% |
| ATCACCTTCGACCTCATCCT+CGG | - | chr1.2:43404576-43404595 | None:intergenic | 50.0% | |
| CGGAAAAAGTTCCATCTCCG+AGG | + | chr1.2:43404078-43404097 | MS.gene46447:CDS | 50.0% | |
| GAAAACTCCCACTTACAGCC+AGG | + | chr1.2:43404760-43404779 | MS.gene46447:CDS | 50.0% | |
| GCAACCAGTCCAAAGGAATC+AGG | + | chr1.2:43405124-43405143 | MS.gene46447:CDS | 50.0% | |
| GGCTTTACAGGTTCCAAAGC+TGG | + | chr1.2:43405085-43405104 | MS.gene46447:CDS | 50.0% | |
| GTCGCTTACGTGTGAAGTTC+AGG | + | chr1.2:43404517-43404536 | MS.gene46447:CDS | 50.0% | |
| TCAGGCACTTGAGGCTGATA+GGG | + | chr1.2:43405201-43405220 | MS.gene46447:CDS | 50.0% | |
| TCCTCTGACTCAGCAACGTT+CGG | + | chr1.2:43404869-43404888 | MS.gene46447:CDS | 50.0% | |
| TTCAGGCACTTGAGGCTGAT+AGG | + | chr1.2:43405200-43405219 | MS.gene46447:CDS | 50.0% | |
| ! | CTCGCGTGGCTTGTCAAATT+TGG | - | chr1.2:43404842-43404861 | None:intergenic | 50.0% |
| ! | GCACCGGATAATGGCTTTAC+AGG | + | chr1.2:43405073-43405092 | MS.gene46447:CDS | 50.0% |
| !! | GACAAGTACCGAGATCTTGC+AGG | - | chr1.2:43405349-43405368 | None:intergenic | 50.0% |
| !! | TTTTGGGTACACCGAGGATG+AGG | + | chr1.2:43404562-43404581 | MS.gene46447:CDS | 50.0% |
| !!! | GATGAGTTTTGGGTACACCG+AGG | + | chr1.2:43404556-43404575 | MS.gene46447:CDS | 50.0% |
| AACTCCCACTTACAGCCAGG+TGG | + | chr1.2:43404763-43404782 | MS.gene46447:CDS | 55.0% | |
| ACCATCCACCTGGCTGTAAG+TGG | - | chr1.2:43404771-43404790 | None:intergenic | 55.0% | |
| ACCGAACGTTGCTGAGTCAG+AGG | - | chr1.2:43404873-43404892 | None:intergenic | 55.0% | |
| CATGAGGCTTCAGGCACTTG+AGG | + | chr1.2:43405192-43405211 | MS.gene46447:CDS | 55.0% | |
| CATTGCCTCATTCGCAGCTG+TGG | - | chr1.2:43404348-43404367 | None:intergenic | 55.0% | |
| CCATCCACCTGGCTGTAAGT+GGG | - | chr1.2:43404770-43404789 | None:intergenic | 55.0% | |
| CGAGCAAGCCTGCAAGATCT+CGG | + | chr1.2:43405338-43405357 | MS.gene46447:CDS | 55.0% | |
| CTGACTCAGCAACGTTCGGT+GGG | + | chr1.2:43404873-43404892 | MS.gene46447:CDS | 55.0% | |
| GAGGTTGCAGAGGGAAAAGG+CGG | + | chr1.2:43404379-43404398 | MS.gene46447:CDS | 55.0% | |
| GGGAGACTCTGTAGGGAACT+CGG | - | chr1.2:43404918-43404937 | None:intergenic | 55.0% | |
| TACACCGAGGATGAGGTCGA+AGG | + | chr1.2:43404569-43404588 | MS.gene46447:CDS | 55.0% | |
| TCTGACTCAGCAACGTTCGG+TGG | + | chr1.2:43404872-43404891 | MS.gene46447:CDS | 55.0% | |
| TGCTTCCACAGCTGCGAATG+AGG | + | chr1.2:43404340-43404359 | MS.gene46447:CDS | 55.0% | |
| !! | CATTCTGGGGCACCGGATAA+TGG | + | chr1.2:43405064-43405083 | MS.gene46447:CDS | 55.0% |
| !! | CTCTGTTCATTCTGGGGCAC+CGG | + | chr1.2:43405057-43405076 | MS.gene46447:CDS | 55.0% |
| CCCACTTACAGCCAGGTGGA+TGG | + | chr1.2:43404767-43404786 | MS.gene46447:CDS | 60.0% | |
| ! | TACCTGTGTCGTCGGTTGCG+CGG | + | chr1.2:43404216-43404235 | MS.gene46447:CDS | 60.0% |
| ! | ACCTGTGTCGTCGGTTGCGC+GGG | + | chr1.2:43404217-43404236 | MS.gene46447:CDS | 65.0% |
| ACCCGCGCAACCGACGACAC+AGG | - | chr1.2:43404221-43404240 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 43404071 | 43405390 | 43404071 | ID=MS.gene46447 |
| chr1.2 | mRNA | 43404071 | 43405390 | 43404071 | ID=MS.gene46447.t1;Parent=MS.gene46447 |
| chr1.2 | exon | 43404071 | 43405390 | 43404071 | ID=MS.gene46447.t1.exon1;Parent=MS.gene46447.t1 |
| chr1.2 | CDS | 43404071 | 43405390 | 43404071 | ID=cds.MS.gene46447.t1;Parent=MS.gene46447.t1 |
| Gene Sequence |
| Protein sequence |
