Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034642.t1 | XP_013467758.1 | 97 | 436 | 12 | 1 | 1 | 436 | 1 | 435 | 9.30E-236 | 825.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034642.t1 | Q9FG14 | 47.9 | 474 | 204 | 13 | 1 | 436 | 1 | 469 | 3.2e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034642.t1 | A0A072VUM2 | 97.0 | 436 | 12 | 1 | 1 | 436 | 1 | 435 | 6.7e-236 | 825.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23060 | MS.gene034642 | PPI |
| MS.gene034642 | MS.gene23060 | PPI |
| MS.gene007068 | MS.gene034642 | PPI |
| MS.gene46447 | MS.gene034642 | PPI |
| MS.gene034642 | MS.gene39222 | PPI |
| MS.gene034642 | MS.gene46447 | PPI |
| MS.gene034642 | MS.gene051902 | PPI |
| MS.gene57045 | MS.gene034642 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034642.t1 | MTR_1g054835 | 96.575 | 438 | 14 | 1 | 1 | 438 | 1 | 437 | 0.0 | 883 |
| MS.gene034642.t1 | MTR_7g107000 | 61.609 | 435 | 139 | 9 | 14 | 438 | 16 | 432 | 1.37e-170 | 488 |
| MS.gene034642.t1 | MTR_1g070350 | 46.789 | 109 | 56 | 1 | 57 | 163 | 522 | 630 | 1.25e-19 | 92.4 |
| MS.gene034642.t1 | MTR_4g130400 | 45.283 | 106 | 58 | 0 | 61 | 166 | 4 | 109 | 1.78e-17 | 84.7 |
| MS.gene034642.t1 | MTR_4g093150 | 34.921 | 126 | 79 | 1 | 40 | 165 | 53 | 175 | 2.67e-14 | 72.0 |
| MS.gene034642.t1 | MTR_5g078300 | 46.053 | 76 | 41 | 0 | 66 | 141 | 620 | 695 | 1.71e-12 | 70.1 |
| MS.gene034642.t1 | MTR_0168s0060 | 33.333 | 168 | 94 | 4 | 29 | 180 | 293 | 458 | 2.51e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034642.t1 | AT5G06560 | 51.559 | 481 | 188 | 14 | 1 | 442 | 1 | 475 | 3.37e-143 | 419 |
| MS.gene034642.t1 | AT3G11850 | 43.018 | 444 | 208 | 12 | 32 | 438 | 22 | 457 | 8.96e-101 | 310 |
| MS.gene034642.t1 | AT3G11850 | 43.018 | 444 | 208 | 12 | 32 | 438 | 22 | 457 | 8.96e-101 | 310 |
| MS.gene034642.t1 | AT3G54740 | 40.343 | 466 | 172 | 12 | 1 | 438 | 1 | 388 | 7.00e-87 | 272 |
| MS.gene034642.t1 | AT3G54740 | 40.343 | 466 | 172 | 12 | 1 | 438 | 1 | 388 | 7.00e-87 | 272 |
| MS.gene034642.t1 | AT3G54740 | 40.343 | 466 | 172 | 12 | 1 | 438 | 1 | 388 | 7.00e-87 | 272 |
| MS.gene034642.t1 | AT3G54740 | 40.343 | 466 | 172 | 12 | 1 | 438 | 1 | 388 | 7.00e-87 | 272 |
| MS.gene034642.t1 | AT3G54740 | 42.216 | 379 | 122 | 10 | 55 | 414 | 15 | 315 | 1.84e-76 | 244 |
| MS.gene034642.t1 | AT3G54740 | 42.216 | 379 | 122 | 10 | 55 | 414 | 15 | 315 | 1.84e-76 | 244 |
| MS.gene034642.t1 | AT3G54740 | 42.216 | 379 | 122 | 10 | 55 | 414 | 15 | 315 | 1.84e-76 | 244 |
| MS.gene034642.t1 | AT3G54740 | 42.216 | 379 | 122 | 10 | 55 | 414 | 15 | 315 | 1.84e-76 | 244 |
| MS.gene034642.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 3.55e-20 | 91.7 |
| MS.gene034642.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 3.55e-20 | 91.7 |
| MS.gene034642.t1 | AT4G30830 | 47.826 | 92 | 48 | 0 | 76 | 167 | 28 | 119 | 4.69e-20 | 91.7 |
| MS.gene034642.t1 | AT4G30830 | 47.826 | 92 | 48 | 0 | 76 | 167 | 28 | 119 | 4.69e-20 | 91.7 |
| MS.gene034642.t1 | AT1G70750 | 27.221 | 349 | 203 | 10 | 73 | 411 | 423 | 730 | 4.98e-19 | 90.5 |
| MS.gene034642.t1 | AT5G16720 | 40.833 | 120 | 71 | 0 | 46 | 165 | 340 | 459 | 1.23e-18 | 89.4 |
| MS.gene034642.t1 | AT5G57830 | 47.321 | 112 | 59 | 0 | 66 | 177 | 19 | 130 | 6.04e-18 | 85.9 |
| MS.gene034642.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 4.89e-17 | 84.3 |
| MS.gene034642.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 4.89e-17 | 84.3 |
| MS.gene034642.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.10e-15 | 80.5 |
| MS.gene034642.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.10e-15 | 80.5 |
| MS.gene034642.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.10e-15 | 80.5 |
| MS.gene034642.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.10e-15 | 80.5 |
| MS.gene034642.t1 | AT1G74830 | 41.739 | 115 | 64 | 1 | 59 | 173 | 301 | 412 | 1.17e-14 | 76.6 |
| MS.gene034642.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 1.52e-13 | 71.2 |
| MS.gene034642.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 1.52e-13 | 71.2 |
| MS.gene034642.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 3.74e-12 | 68.9 |
| MS.gene034642.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 3.74e-12 | 68.9 |
| MS.gene034642.t1 | AT1G04890 | 41.346 | 104 | 47 | 1 | 71 | 160 | 105 | 208 | 9.16e-12 | 67.0 |
| MS.gene034642.t1 | AT1G18990 | 44.792 | 96 | 53 | 0 | 66 | 161 | 304 | 399 | 9.97e-12 | 67.4 |
Find 99 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATACTTGTTATTGTTCT+TGG | 0.136537 | 1.3:-39991684 | None:intergenic |
| CTCGCGTGGCTTGTCAAATT+TGG | 0.151219 | 1.3:-39991587 | None:intergenic |
| ACAATTGACTCTGTTCATTC+TGG | 0.200824 | 1.3:+39991797 | MS.gene034642:CDS |
| AAAGCACAATGAGTTTAAAT+TGG | 0.239451 | 1.3:+39990932 | MS.gene034642:CDS |
| AAACACAGGATGATGAGTTT+TGG | 0.300857 | 1.3:+39991293 | MS.gene034642:CDS |
| GCACCGGATAATGGCTTTAC+AGG | 0.308345 | 1.3:+39991821 | MS.gene034642:CDS |
| TCAGGAGGAACTTATGTCTT+TGG | 0.312375 | 1.3:+39991208 | MS.gene034642:CDS |
| TGATGATTCCCTGATTCCTT+TGG | 0.314429 | 1.3:-39991881 | None:intergenic |
| TTATACTTGTTATTGTTCTT+GGG | 0.322493 | 1.3:-39991683 | None:intergenic |
| TTCAAATTTGAATTGTCCTC+TGG | 0.337959 | 1.3:-39991725 | None:intergenic |
| AAATGTAATGTCATGTATAA+TGG | 0.343360 | 1.3:+39991383 | MS.gene034642:CDS |
| GTCCCTTACATGCGAAGTTC+AGG | 0.347573 | 1.3:+39991265 | MS.gene034642:CDS |
| CATTCTGGGGCACCGGATAA+TGG | 0.354097 | 1.3:+39991812 | MS.gene034642:CDS |
| TATGCAGCAGAGAACGATTC+AGG | 0.369549 | 1.3:+39991031 | MS.gene034642:CDS |
| TCCTCTGACTCAGCAACGTT+CGG | 0.376250 | 1.3:+39991617 | MS.gene034642:CDS |
| GCAACCAGTCCAAAGGAATC+AGG | 0.378139 | 1.3:+39991872 | MS.gene034642:CDS |
| AAGCTCCTCAAACGGTCATT+AGG | 0.378165 | 1.3:-39991461 | None:intergenic |
| GACAAGTACCGAGATCTTGC+AGG | 0.390060 | 1.3:-39992094 | None:intergenic |
| ATCATCGAAACCTCCAGCTT+TGG | 0.392724 | 1.3:-39991846 | None:intergenic |
| GTTTGAGGAGCTTGGAGAAT+AGG | 0.397127 | 1.3:+39991471 | MS.gene034642:CDS |
| TTCAGGCACTTGAGGCTGAT+AGG | 0.398288 | 1.3:+39991948 | MS.gene034642:CDS |
| CATGTACAGCTTCTTAATGT+AGG | 0.398593 | 1.3:-39991921 | None:intergenic |
| GGCTTTACAGGTTCCAAAGC+TGG | 0.408092 | 1.3:+39991833 | MS.gene034642:CDS |
| AAGCCTGAACTTCGCATGTA+AGG | 0.410654 | 1.3:-39991268 | None:intergenic |
| GGTGGGATGTGTAAAGAAAT+AGG | 0.411105 | 1.3:+39991638 | MS.gene034642:CDS |
| CAATTGACTCTGTTCATTCT+GGG | 0.412467 | 1.3:+39991798 | MS.gene034642:CDS |
| ACCTGTGTCGTCGGTTGCGC+GGG | 0.422138 | 1.3:+39990965 | MS.gene034642:CDS |
| GGAGAATAGGATTTCTCAAA+TGG | 0.426445 | 1.3:+39991484 | MS.gene034642:CDS |
| TAATGACCGTTTGAGGAGCT+TGG | 0.436236 | 1.3:+39991463 | MS.gene034642:CDS |
| GGATTTGAATGAGGAGTTGG+AGG | 0.445102 | 1.3:+39991052 | MS.gene034642:CDS |
| GAAGCTGTACATGAGGCTTC+AGG | 0.446909 | 1.3:+39991931 | MS.gene034642:CDS |
| ATTCCCTGATTCCTTTGGAC+TGG | 0.453675 | 1.3:-39991876 | None:intergenic |
| CTCTGTTCATTCTGGGGCAC+CGG | 0.453986 | 1.3:+39991805 | MS.gene034642:CDS |
| GGAGAAAATGACGCATGATC+AGG | 0.455281 | 1.3:+39991190 | MS.gene034642:CDS |
| TTGTTGAAATGTTGTGATTG+TGG | 0.462676 | 1.3:+39990852 | MS.gene034642:CDS |
| TCAGGATTTGAATGAGGAGT+TGG | 0.463110 | 1.3:+39991049 | MS.gene034642:CDS |
| TTTGAGGTTGCAGAGGGAAA+AGG | 0.465476 | 1.3:+39991124 | MS.gene034642:CDS |
| TTTGAATGAGGAGTTGGAGG+AGG | 0.470668 | 1.3:+39991055 | MS.gene034642:CDS |
| GATATTGAGAAATATGCATT+TGG | 0.470801 | 1.3:+39991431 | MS.gene034642:CDS |
| TTGTGGATGTAGTTGTTCCT+TGG | 0.472863 | 1.3:+39990869 | MS.gene034642:CDS |
| GTTACGGAGAAAGTAATTGT+TGG | 0.483998 | 1.3:+39991557 | MS.gene034642:CDS |
| TTTAAAGGAGGGTATTCGTA+TGG | 0.487165 | 1.3:-39991362 | None:intergenic |
| GGAAAAGGCGGAAGTTCAAA+TGG | 0.490761 | 1.3:+39991139 | MS.gene034642:CDS |
| TGGATGTAGTTGTTCCTTGG+TGG | 0.490768 | 1.3:+39990872 | MS.gene034642:CDS |
| GAACCTGTAAAGCCATTATC+CGG | 0.491366 | 1.3:-39991824 | None:intergenic |
| GGACAATTCAAATTTGAAGA+AGG | 0.492097 | 1.3:+39991730 | MS.gene034642:CDS |
| ACCATCCACCTGGCTGTAAG+TGG | 0.503511 | 1.3:-39991516 | None:intergenic |
| TCAGGCACTTGAGGCTGATA+GGG | 0.504864 | 1.3:+39991949 | MS.gene034642:CDS |
| TTGTTCTTGGGAGACTCTGT+AGG | 0.505523 | 1.3:-39991671 | None:intergenic |
| TACCTGTGTCGTCGGTTGCG+CGG | 0.506467 | 1.3:+39990964 | MS.gene034642:CDS |
| TGCGTCCACAGCTGCGAATG+AGG | 0.516671 | 1.3:+39991088 | MS.gene034642:CDS |
| ATGTACAGCTTCTTAATGTA+GGG | 0.516846 | 1.3:-39991920 | None:intergenic |
| AGCCTGAACTTCGCATGTAA+GGG | 0.518443 | 1.3:-39991267 | None:intergenic |
| ATGAGGAGTTGGAGGAGGAG+AGG | 0.524043 | 1.3:+39991060 | MS.gene034642:CDS |
| TCTGACTCAGCAACGTTCGG+TGG | 0.530457 | 1.3:+39991620 | MS.gene034642:CDS |
| TGTTCTTGGGAGACTCTGTA+GGG | 0.530579 | 1.3:-39991670 | None:intergenic |
| GAACAATAACAAGTATAAGA+AGG | 0.531882 | 1.3:+39991688 | MS.gene034642:CDS |
| ATCACCTTCGACCTCATCCT+CGG | 0.533257 | 1.3:-39991321 | None:intergenic |
| CATGAGGCTTCAGGCACTTG+AGG | 0.533789 | 1.3:+39991940 | MS.gene034642:CDS |
| AACGATTCAGGATTTGAATG+AGG | 0.533822 | 1.3:+39991043 | MS.gene034642:CDS |
| AAACTCCTAATGACCGTTTG+AGG | 0.535504 | 1.3:+39991456 | MS.gene034642:CDS |
| TTCAACAAATCCCTCGGAGA+TGG | 0.542740 | 1.3:-39990837 | None:intergenic |
| CAACCAGTCCAAAGGAATCA+GGG | 0.548648 | 1.3:+39991873 | MS.gene034642:CDS |
| CATTGCCTCATTCGCAGCTG+TGG | 0.549839 | 1.3:-39991093 | None:intergenic |
| AAAGGAGGGTATTCGTATGG+AGG | 0.549905 | 1.3:-39991359 | None:intergenic |
| TGATAGGGAATCAATGAGGC+AGG | 0.551938 | 1.3:+39991964 | MS.gene034642:CDS |
| CGAGCAAGCCTGCAAGATCT+CGG | 0.551994 | 1.3:+39992086 | MS.gene034642:CDS |
| GGGAGACTCTGTAGGGAACT+CGG | 0.562340 | 1.3:-39991663 | None:intergenic |
| TATTCTCCAAGCTCCTCAAA+CGG | 0.563369 | 1.3:-39991469 | None:intergenic |
| CAGAGGAAAATTTCCTCGCG+TGG | 0.574693 | 1.3:-39991601 | None:intergenic |
| ACCGAACGTTGCTGAGTCAG+AGG | 0.583019 | 1.3:-39991618 | None:intergenic |
| CCCACTTACAGCCAGGTGGA+TGG | 0.583532 | 1.3:+39991515 | MS.gene034642:CDS |
| CTGACTCAGCAACGTTCGGT+GGG | 0.585081 | 1.3:+39991621 | MS.gene034642:CDS |
| ATGTGTTGTGTTACGTGAGA+TGG | 0.587855 | 1.3:+39991004 | MS.gene034642:CDS |
| CAATAAAATCACCATCCACC+TGG | 0.588402 | 1.3:-39991526 | None:intergenic |
| GAAAACTCCCACTTACAGCC+AGG | 0.590810 | 1.3:+39991508 | MS.gene034642:CDS |
| AAGGTAGATAATGCTTCAGA+AGG | 0.602096 | 1.3:+39991749 | MS.gene034642:CDS |
| GGATAAAGTTCCATCTCCGA+GGG | 0.603660 | 1.3:+39990827 | MS.gene034642:CDS |
| AGCACAGGTTGTGTTACTGA+AGG | 0.606214 | 1.3:+39992012 | MS.gene034642:CDS |
| AATGAGCACAGATAAAGCAC+AGG | 0.607100 | 1.3:+39991997 | MS.gene034642:CDS |
| CAACATTTCAACAAATCCCT+CGG | 0.610770 | 1.3:-39990843 | None:intergenic |
| TTTACAGGTTCCAAAGCTGG+AGG | 0.613417 | 1.3:+39991836 | MS.gene034642:CDS |
| AATTGACTCTGTTCATTCTG+GGG | 0.616386 | 1.3:+39991799 | MS.gene034642:CDS |
| TAATGTCATGTATAATGGCA+TGG | 0.619732 | 1.3:+39991388 | MS.gene034642:CDS |
| TGATTATGCAACCAGTCCAA+AGG | 0.622802 | 1.3:+39991865 | MS.gene034642:CDS |
| TTCAGAACATTGTTCCACCA+AGG | 0.625495 | 1.3:-39990886 | None:intergenic |
| ACATTAAGAAGCTGTACATG+AGG | 0.631645 | 1.3:+39991924 | MS.gene034642:CDS |
| ACCCGCGCAACCGACGACAC+AGG | 0.633336 | 1.3:-39990966 | None:intergenic |
| GAAAATGACGCATGATCAGG+AGG | 0.634038 | 1.3:+39991193 | MS.gene034642:CDS |
| CCATCCACCTGGCTGTAAGT+GGG | 0.639457 | 1.3:-39991515 | None:intergenic |
| TAGTGAATTACCTGTGTCGT+CGG | 0.646306 | 1.3:+39990956 | MS.gene034642:CDS |
| GAGGTTGCAGAGGGAAAAGG+CGG | 0.649166 | 1.3:+39991127 | MS.gene034642:CDS |
| CAAATTTGACAAGCCACGCG+AGG | 0.651200 | 1.3:+39991588 | MS.gene034642:CDS |
| CGGATAAAGTTCCATCTCCG+AGG | 0.658782 | 1.3:+39990826 | MS.gene034642:CDS |
| GGATTATTTCTCTCAACCAG+AGG | 0.660219 | 1.3:+39991709 | MS.gene034642:CDS |
| AAGTTCAGGCTTATAAACAC+AGG | 0.668096 | 1.3:+39991279 | MS.gene034642:CDS |
| TACACCGAGGATGAGGTCGA+AGG | 0.669244 | 1.3:+39991317 | MS.gene034642:CDS |
| AACTCCCACTTACAGCCAGG+TGG | 0.685414 | 1.3:+39991511 | MS.gene034642:CDS |
| AGGCTGATAGGGAATCAATG+AGG | 0.730909 | 1.3:+39991960 | MS.gene034642:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTGGAAAAAATGTTA+CGG | + | chr1.3:39991541-39991560 | MS.gene034642:CDS | 15.0% |
| !! | AAATGTAATGTCATGTATAA+TGG | + | chr1.3:39991383-39991402 | MS.gene034642:CDS | 20.0% |
| !!! | TACATGACATTACATTTTAA+AGG | - | chr1.3:39991380-39991399 | None:intergenic | 20.0% |
| !!! | TTATACTTGTTATTGTTCTT+GGG | - | chr1.3:39991686-39991705 | None:intergenic | 20.0% |
| ! | AAAGCACAATGAGTTTAAAT+TGG | + | chr1.3:39990932-39990951 | MS.gene034642:CDS | 25.0% |
| ! | GAACAATAACAAGTATAAGA+AGG | + | chr1.3:39991688-39991707 | MS.gene034642:CDS | 25.0% |
| ! | GATATTGAGAAATATGCATT+TGG | + | chr1.3:39991431-39991450 | MS.gene034642:CDS | 25.0% |
| ! | TTAAGGCATGTTTGAAAAAT+TGG | - | chr1.3:39992261-39992280 | None:intergenic | 25.0% |
| !! | CAAAATTTAGCTTCCAATTA+AGG | - | chr1.3:39992278-39992297 | None:intergenic | 25.0% |
| !!! | ATGACATTACATTTTAAAGG+AGG | - | chr1.3:39991377-39991396 | None:intergenic | 25.0% |
| !!! | CTTATACTTGTTATTGTTCT+TGG | - | chr1.3:39991687-39991706 | None:intergenic | 25.0% |
| !!! | TGACATTACATTTTAAAGGA+GGG | - | chr1.3:39991376-39991395 | None:intergenic | 25.0% |
| !!! | TTTTTCAAACATGCCTTAAT+TGG | + | chr1.3:39992262-39992281 | MS.gene034642:intron | 25.0% |
| ATGTACAGCTTCTTAATGTA+GGG | - | chr1.3:39991923-39991942 | None:intergenic | 30.0% | |
| CTAGATAACGTTTACATACA+GGG | - | chr1.3:39992398-39992417 | None:intergenic | 30.0% | |
| GAAAAGCAAGAATGATGAAA+TGG | - | chr1.3:39992182-39992201 | None:intergenic | 30.0% | |
| GGACAATTCAAATTTGAAGA+AGG | + | chr1.3:39991730-39991749 | MS.gene034642:CDS | 30.0% | |
| TAATGTCATGTATAATGGCA+TGG | + | chr1.3:39991388-39991407 | MS.gene034642:CDS | 30.0% | |
| TTCAAATTTGAATTGTCCTC+TGG | - | chr1.3:39991728-39991747 | None:intergenic | 30.0% | |
| TTGTTGAAATGTTGTGATTG+TGG | + | chr1.3:39990852-39990871 | MS.gene034642:CDS | 30.0% | |
| ! | TCGGTACTTGTCAATTTTTA+AGG | + | chr1.3:39992105-39992124 | MS.gene034642:CDS | 30.0% |
| !! | TGGAACAATGTTCTGAAAAA+TGG | + | chr1.3:39990892-39990911 | MS.gene034642:CDS | 30.0% |
| AACGATTCAGGATTTGAATG+AGG | + | chr1.3:39991043-39991062 | MS.gene034642:CDS | 35.0% | |
| AAGGTAGATAATGCTTCAGA+AGG | + | chr1.3:39991749-39991768 | MS.gene034642:CDS | 35.0% | |
| AAGTTCAGGCTTATAAACAC+AGG | + | chr1.3:39991279-39991298 | MS.gene034642:CDS | 35.0% | |
| ACATTAAGAAGCTGTACATG+AGG | + | chr1.3:39991924-39991943 | MS.gene034642:CDS | 35.0% | |
| CAACATTTCAACAAATCCCT+CGG | - | chr1.3:39990846-39990865 | None:intergenic | 35.0% | |
| CATGTACAGCTTCTTAATGT+AGG | - | chr1.3:39991924-39991943 | None:intergenic | 35.0% | |
| CCTAGATAACGTTTACATAC+AGG | - | chr1.3:39992399-39992418 | None:intergenic | 35.0% | |
| CCTGTATGTAAACGTTATCT+AGG | + | chr1.3:39992396-39992415 | MS.gene034642:intron | 35.0% | |
| GGAGAATAGGATTTCTCAAA+TGG | + | chr1.3:39991484-39991503 | MS.gene034642:CDS | 35.0% | |
| GTTACGGAGAAAGTAATTGT+TGG | + | chr1.3:39991557-39991576 | MS.gene034642:CDS | 35.0% | |
| ! | AAACACAGGATGATGAGTTT+TGG | + | chr1.3:39991293-39991312 | MS.gene034642:CDS | 35.0% |
| ! | AACACAGGATGATGAGTTTT+GGG | + | chr1.3:39991294-39991313 | MS.gene034642:CDS | 35.0% |
| ! | AATTGACTCTGTTCATTCTG+GGG | + | chr1.3:39991799-39991818 | MS.gene034642:CDS | 35.0% |
| ! | ACAATTGACTCTGTTCATTC+TGG | + | chr1.3:39991797-39991816 | MS.gene034642:CDS | 35.0% |
| ! | CAATTGACTCTGTTCATTCT+GGG | + | chr1.3:39991798-39991817 | MS.gene034642:CDS | 35.0% |
| !! | CTCGTACTCATTTTTCTTTG+CGG | - | chr1.3:39992070-39992089 | None:intergenic | 35.0% |
| !! | TTTAAAGGAGGGTATTCGTA+TGG | - | chr1.3:39991365-39991384 | None:intergenic | 35.0% |
| !!! | TCAGAGTATTTTTTGTGAGG+GGG | - | chr1.3:39992456-39992475 | None:intergenic | 35.0% |
| AAACTCCTAATGACCGTTTG+AGG | + | chr1.3:39991456-39991475 | MS.gene034642:CDS | 40.0% | |
| AATGAGCACAGATAAAGCAC+AGG | + | chr1.3:39991997-39992016 | MS.gene034642:CDS | 40.0% | |
| AGGGAAACTGAACCTTTAGA+GGG | - | chr1.3:39992379-39992398 | None:intergenic | 40.0% | |
| ATGTGTTGTGTTACGTGAGA+TGG | + | chr1.3:39991004-39991023 | MS.gene034642:CDS | 40.0% | |
| CAATAAAATCACCATCCACC+TGG | - | chr1.3:39991529-39991548 | None:intergenic | 40.0% | |
| GAACCTGTAAAGCCATTATC+CGG | - | chr1.3:39991827-39991846 | None:intergenic | 40.0% | |
| GGTGGGATGTGTAAAGAAAT+AGG | + | chr1.3:39991638-39991657 | MS.gene034642:CDS | 40.0% | |
| TAGTGAATTACCTGTGTCGT+CGG | + | chr1.3:39990956-39990975 | MS.gene034642:CDS | 40.0% | |
| TATTCTCCAAGCTCCTCAAA+CGG | - | chr1.3:39991472-39991491 | None:intergenic | 40.0% | |
| TCAGGAGGAACTTATGTCTT+TGG | + | chr1.3:39991208-39991227 | MS.gene034642:CDS | 40.0% | |
| TCAGGATTTGAATGAGGAGT+TGG | + | chr1.3:39991049-39991068 | MS.gene034642:CDS | 40.0% | |
| TGATGATTCCCTGATTCCTT+TGG | - | chr1.3:39991884-39991903 | None:intergenic | 40.0% | |
| TGATTATGCAACCAGTCCAA+AGG | + | chr1.3:39991865-39991884 | MS.gene034642:CDS | 40.0% | |
| TTCAGAACATTGTTCCACCA+AGG | - | chr1.3:39990889-39990908 | None:intergenic | 40.0% | |
| TTGTGGATGTAGTTGTTCCT+TGG | + | chr1.3:39990869-39990888 | MS.gene034642:CDS | 40.0% | |
| ! | AGGCAATGTCGATGATTTTG+AGG | + | chr1.3:39991108-39991127 | MS.gene034642:CDS | 40.0% |
| ! | CAGGTGGATGGTGATTTTAT+TGG | + | chr1.3:39991527-39991546 | MS.gene034642:CDS | 40.0% |
| ! | GGATTATTTCTCTCAACCAG+AGG | + | chr1.3:39991709-39991728 | MS.gene034642:CDS | 40.0% |
| ! | TCAGTTTAAGCGTTTTGCAG+AGG | + | chr1.3:39991169-39991188 | MS.gene034642:CDS | 40.0% |
| ! | TGAACCTTTAGAGGGAACAA+GGG | - | chr1.3:39992371-39992390 | None:intergenic | 40.0% |
| !!! | CAGAGTATTTTTTGTGAGGG+GGG | - | chr1.3:39992455-39992474 | None:intergenic | 40.0% |
| !!! | GATGATTTTGAGGTTGCAGA+GGG | + | chr1.3:39991118-39991137 | MS.gene034642:CDS | 40.0% |
| AAGCCTGAACTTCGCATGTA+AGG | - | chr1.3:39991271-39991290 | None:intergenic | 45.0% | |
| AAGCTCCTCAAACGGTCATT+AGG | - | chr1.3:39991464-39991483 | None:intergenic | 45.0% | |
| AGCCTGAACTTCGCATGTAA+GGG | - | chr1.3:39991270-39991289 | None:intergenic | 45.0% | |
| AGGCTGATAGGGAATCAATG+AGG | + | chr1.3:39991960-39991979 | MS.gene034642:CDS | 45.0% | |
| ATCATCGAAACCTCCAGCTT+TGG | - | chr1.3:39991849-39991868 | None:intergenic | 45.0% | |
| ATCTCCCTTGTTCCCTCTAA+AGG | + | chr1.3:39992364-39992383 | MS.gene034642:intron | 45.0% | |
| ATTCCCTGATTCCTTTGGAC+TGG | - | chr1.3:39991879-39991898 | None:intergenic | 45.0% | |
| CAACCAGTCCAAAGGAATCA+GGG | + | chr1.3:39991873-39991892 | MS.gene034642:CDS | 45.0% | |
| CAGGGAAACTGAACCTTTAG+AGG | - | chr1.3:39992380-39992399 | None:intergenic | 45.0% | |
| GAAAATGACGCATGATCAGG+AGG | + | chr1.3:39991193-39991212 | MS.gene034642:CDS | 45.0% | |
| GGAAAAGGCGGAAGTTCAAA+TGG | + | chr1.3:39991139-39991158 | MS.gene034642:CDS | 45.0% | |
| GGAGAAAATGACGCATGATC+AGG | + | chr1.3:39991190-39991209 | MS.gene034642:CDS | 45.0% | |
| GGATAAAGTTCCATCTCCGA+GGG | + | chr1.3:39990827-39990846 | MS.gene034642:CDS | 45.0% | |
| GGATTTGAATGAGGAGTTGG+AGG | + | chr1.3:39991052-39991071 | MS.gene034642:CDS | 45.0% | |
| GTTTGAGGAGCTTGGAGAAT+AGG | + | chr1.3:39991471-39991490 | MS.gene034642:CDS | 45.0% | |
| TAATGACCGTTTGAGGAGCT+TGG | + | chr1.3:39991463-39991482 | MS.gene034642:CDS | 45.0% | |
| TATGCAGCAGAGAACGATTC+AGG | + | chr1.3:39991031-39991050 | MS.gene034642:CDS | 45.0% | |
| TGATAGGGAATCAATGAGGC+AGG | + | chr1.3:39991964-39991983 | MS.gene034642:CDS | 45.0% | |
| TGGATGTAGTTGTTCCTTGG+TGG | + | chr1.3:39990872-39990891 | MS.gene034642:CDS | 45.0% | |
| TGTTCTTGGGAGACTCTGTA+GGG | - | chr1.3:39991673-39991692 | None:intergenic | 45.0% | |
| TTCAACAAATCCCTCGGAGA+TGG | - | chr1.3:39990840-39990859 | None:intergenic | 45.0% | |
| TTGTTCTTGGGAGACTCTGT+AGG | - | chr1.3:39991674-39991693 | None:intergenic | 45.0% | |
| TTTACAGGTTCCAAAGCTGG+AGG | + | chr1.3:39991836-39991855 | MS.gene034642:CDS | 45.0% | |
| TTTGAATGAGGAGTTGGAGG+AGG | + | chr1.3:39991055-39991074 | MS.gene034642:CDS | 45.0% | |
| ! | AGCACAGGTTGTGTTACTGA+AGG | + | chr1.3:39992012-39992031 | MS.gene034642:CDS | 45.0% |
| ! | CTGAACCTTTAGAGGGAACA+AGG | - | chr1.3:39992372-39992391 | None:intergenic | 45.0% |
| ! | TTTGAGGTTGCAGAGGGAAA+AGG | + | chr1.3:39991124-39991143 | MS.gene034642:CDS | 45.0% |
| ! | TTTTTGTGAGGGGGGAAGAT+CGG | - | chr1.3:39992447-39992466 | None:intergenic | 45.0% |
| !! | AAAGGAGGGTATTCGTATGG+AGG | - | chr1.3:39991362-39991381 | None:intergenic | 45.0% |
| !!! | CGATGATTTTGAGGTTGCAG+AGG | + | chr1.3:39991117-39991136 | MS.gene034642:CDS | 45.0% |
| ATCACCTTCGACCTCATCCT+CGG | - | chr1.3:39991324-39991343 | None:intergenic | 50.0% | |
| CAAATTTGACAAGCCACGCG+AGG | + | chr1.3:39991588-39991607 | MS.gene034642:CDS | 50.0% | |
| CAGAGGAAAATTTCCTCGCG+TGG | - | chr1.3:39991604-39991623 | None:intergenic | 50.0% | |
| CGGATAAAGTTCCATCTCCG+AGG | + | chr1.3:39990826-39990845 | MS.gene034642:CDS | 50.0% | |
| GAAAACTCCCACTTACAGCC+AGG | + | chr1.3:39991508-39991527 | MS.gene034642:CDS | 50.0% | |
| GAAGCTGTACATGAGGCTTC+AGG | + | chr1.3:39991931-39991950 | MS.gene034642:CDS | 50.0% | |
| GCAACCAGTCCAAAGGAATC+AGG | + | chr1.3:39991872-39991891 | MS.gene034642:CDS | 50.0% | |
| GGCTTTACAGGTTCCAAAGC+TGG | + | chr1.3:39991833-39991852 | MS.gene034642:CDS | 50.0% | |
| GGGGGAAGATCGGTATACAA+AGG | - | chr1.3:39992437-39992456 | None:intergenic | 50.0% | |
| GTCCCTTACATGCGAAGTTC+AGG | + | chr1.3:39991265-39991284 | MS.gene034642:CDS | 50.0% | |
| TCAGGCACTTGAGGCTGATA+GGG | + | chr1.3:39991949-39991968 | MS.gene034642:CDS | 50.0% | |
| TCCTCTGACTCAGCAACGTT+CGG | + | chr1.3:39991617-39991636 | MS.gene034642:CDS | 50.0% | |
| TTCAGGCACTTGAGGCTGAT+AGG | + | chr1.3:39991948-39991967 | MS.gene034642:CDS | 50.0% | |
| ! | CTCGCGTGGCTTGTCAAATT+TGG | - | chr1.3:39991590-39991609 | None:intergenic | 50.0% |
| ! | GCACCGGATAATGGCTTTAC+AGG | + | chr1.3:39991821-39991840 | MS.gene034642:CDS | 50.0% |
| !! | GACAAGTACCGAGATCTTGC+AGG | - | chr1.3:39992097-39992116 | None:intergenic | 50.0% |
| !! | TTTTGGGTACACCGAGGATG+AGG | + | chr1.3:39991310-39991329 | MS.gene034642:CDS | 50.0% |
| !!! | GATGAGTTTTGGGTACACCG+AGG | + | chr1.3:39991304-39991323 | MS.gene034642:CDS | 50.0% |
| AACTCCCACTTACAGCCAGG+TGG | + | chr1.3:39991511-39991530 | MS.gene034642:CDS | 55.0% | |
| ACCATCCACCTGGCTGTAAG+TGG | - | chr1.3:39991519-39991538 | None:intergenic | 55.0% | |
| ACCGAACGTTGCTGAGTCAG+AGG | - | chr1.3:39991621-39991640 | None:intergenic | 55.0% | |
| ATGAGGAGTTGGAGGAGGAG+AGG | + | chr1.3:39991060-39991079 | MS.gene034642:CDS | 55.0% | |
| CATGAGGCTTCAGGCACTTG+AGG | + | chr1.3:39991940-39991959 | MS.gene034642:CDS | 55.0% | |
| CATTGCCTCATTCGCAGCTG+TGG | - | chr1.3:39991096-39991115 | None:intergenic | 55.0% | |
| CCATCCACCTGGCTGTAAGT+GGG | - | chr1.3:39991518-39991537 | None:intergenic | 55.0% | |
| CGAGCAAGCCTGCAAGATCT+CGG | + | chr1.3:39992086-39992105 | MS.gene034642:CDS | 55.0% | |
| CTGACTCAGCAACGTTCGGT+GGG | + | chr1.3:39991621-39991640 | MS.gene034642:CDS | 55.0% | |
| GAGGTTGCAGAGGGAAAAGG+CGG | + | chr1.3:39991127-39991146 | MS.gene034642:CDS | 55.0% | |
| GGGAGACTCTGTAGGGAACT+CGG | - | chr1.3:39991666-39991685 | None:intergenic | 55.0% | |
| TACACCGAGGATGAGGTCGA+AGG | + | chr1.3:39991317-39991336 | MS.gene034642:CDS | 55.0% | |
| TCTGACTCAGCAACGTTCGG+TGG | + | chr1.3:39991620-39991639 | MS.gene034642:CDS | 55.0% | |
| !! | CATTCTGGGGCACCGGATAA+TGG | + | chr1.3:39991812-39991831 | MS.gene034642:CDS | 55.0% |
| !! | CTCTGTTCATTCTGGGGCAC+CGG | + | chr1.3:39991805-39991824 | MS.gene034642:CDS | 55.0% |
| CCCACTTACAGCCAGGTGGA+TGG | + | chr1.3:39991515-39991534 | MS.gene034642:CDS | 60.0% | |
| TGCGTCCACAGCTGCGAATG+AGG | + | chr1.3:39991088-39991107 | MS.gene034642:CDS | 60.0% | |
| ! | TACCTGTGTCGTCGGTTGCG+CGG | + | chr1.3:39990964-39990983 | MS.gene034642:CDS | 60.0% |
| ! | ACCTGTGTCGTCGGTTGCGC+GGG | + | chr1.3:39990965-39990984 | MS.gene034642:CDS | 65.0% |
| ACCCGCGCAACCGACGACAC+AGG | - | chr1.3:39990969-39990988 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 39990819 | 39992475 | 39990819 | ID=MS.gene034642 |
| chr1.3 | mRNA | 39990819 | 39992475 | 39990819 | ID=MS.gene034642.t1;Parent=MS.gene034642 |
| chr1.3 | exon | 39990819 | 39992126 | 39990819 | ID=MS.gene034642.t1.exon1;Parent=MS.gene034642.t1 |
| chr1.3 | CDS | 39990819 | 39992126 | 39990819 | ID=cds.MS.gene034642.t1;Parent=MS.gene034642.t1 |
| chr1.3 | exon | 39992428 | 39992475 | 39992428 | ID=MS.gene034642.t1.exon2;Parent=MS.gene034642.t1 |
| chr1.3 | CDS | 39992428 | 39992475 | 39992428 | ID=cds.MS.gene034642.t1;Parent=MS.gene034642.t1 |
| Gene Sequence |
| Protein sequence |
