Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39222.t1 | XP_013467758.1 | 97.3 | 451 | 11 | 1 | 1 | 451 | 1 | 450 | 1.60E-246 | 861.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39222.t1 | Q9FG14 | 48.7 | 489 | 208 | 13 | 1 | 451 | 1 | 484 | 2.4e-99 | 364.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39222.t1 | A0A072VUM2 | 97.3 | 451 | 11 | 1 | 1 | 451 | 1 | 450 | 1.1e-246 | 861.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene39222 | 0.801679 | 8.03E-49 | -1.69E-46 |
| MS.gene049703 | MS.gene39222 | -0.805977 | 1.03E-49 | -1.69E-46 |
| MS.gene049822 | MS.gene39222 | 0.829908 | 3.96E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene39222 | 0.821337 | 4.26E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene39222 | 0.86721 | 1.62E-65 | -1.69E-46 |
| MS.gene050838 | MS.gene39222 | 0.809342 | 1.98E-50 | -1.69E-46 |
| MS.gene051233 | MS.gene39222 | 0.803786 | 2.95E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene39222 | 0.805583 | 1.24E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene39222 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene051756 | MS.gene39222 | 0.82184 | 3.26E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene39222 | 0.815844 | 7.51E-52 | -1.69E-46 |
| MS.gene052527 | MS.gene39222 | 0.825718 | 4.02E-54 | -1.69E-46 |
| MS.gene052818 | MS.gene39222 | -0.802343 | 5.87E-49 | -1.69E-46 |
| MS.gene053167 | MS.gene39222 | 0.80473 | 1.88E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene39222 | 0.846016 | 2.83E-59 | -1.69E-46 |
| MS.gene05344 | MS.gene39222 | -0.823518 | 1.33E-53 | -1.69E-46 |
| MS.gene05380 | MS.gene39222 | 0.813603 | 2.35E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene39222 | 0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene39222 | 0.831248 | 1.86E-55 | -1.69E-46 |
| MS.gene055314 | MS.gene39222 | 0.807001 | 6.26E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene39222 | 0.800961 | 1.13E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene39222 | 0.807064 | 6.07E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene39222 | 0.82454 | 7.64E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene39222 | 0.809601 | 1.75E-50 | -1.69E-46 |
| MS.gene058438 | MS.gene39222 | 0.814457 | 1.53E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene39222 | 0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene058654 | MS.gene39222 | 0.815381 | 9.52E-52 | -1.69E-46 |
| MS.gene058758 | MS.gene39222 | 0.819484 | 1.13E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene39222 | 0.831524 | 1.59E-55 | -1.69E-46 |
| MS.gene059171 | MS.gene39222 | 0.826356 | 2.84E-54 | -1.69E-46 |
| MS.gene059360 | MS.gene39222 | 0.825846 | 3.75E-54 | -1.69E-46 |
| MS.gene060084 | MS.gene39222 | 0.815095 | 1.10E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene39222 | 0.83005 | 3.65E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene39222 | 0.809654 | 1.70E-50 | -1.69E-46 |
| MS.gene060465 | MS.gene39222 | 0.809526 | 1.81E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene39222 | 0.828074 | 1.10E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene39222 | 0.830733 | 2.49E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46447 | MS.gene39222 | PPI |
| MS.gene23060 | MS.gene39222 | PPI |
| MS.gene39222 | MS.gene051902 | PPI |
| MS.gene034642 | MS.gene39222 | PPI |
| MS.gene57045 | MS.gene39222 | PPI |
| MS.gene007068 | MS.gene39222 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39222.t1 | MTR_1g054835 | 97.339 | 451 | 11 | 1 | 1 | 451 | 1 | 450 | 0.0 | 919 |
| MS.gene39222.t1 | MTR_7g107000 | 61.969 | 447 | 142 | 9 | 14 | 450 | 16 | 444 | 2.49e-179 | 510 |
| MS.gene39222.t1 | MTR_1g070350 | 46.789 | 109 | 56 | 1 | 57 | 163 | 522 | 630 | 1.19e-19 | 92.4 |
| MS.gene39222.t1 | MTR_4g130400 | 45.283 | 106 | 58 | 0 | 61 | 166 | 4 | 109 | 1.68e-17 | 85.1 |
| MS.gene39222.t1 | MTR_4g093150 | 35.484 | 124 | 77 | 1 | 42 | 165 | 55 | 175 | 4.47e-14 | 71.6 |
| MS.gene39222.t1 | MTR_5g078300 | 46.053 | 76 | 41 | 0 | 66 | 141 | 620 | 695 | 1.78e-12 | 70.1 |
| MS.gene39222.t1 | MTR_0168s0060 | 35.099 | 151 | 84 | 3 | 42 | 180 | 310 | 458 | 4.12e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39222.t1 | AT5G06560 | 53.265 | 490 | 184 | 15 | 1 | 451 | 1 | 484 | 4.40e-154 | 447 |
| MS.gene39222.t1 | AT3G11850 | 43.982 | 457 | 211 | 12 | 32 | 451 | 22 | 470 | 1.54e-109 | 333 |
| MS.gene39222.t1 | AT3G11850 | 43.982 | 457 | 211 | 12 | 32 | 451 | 22 | 470 | 1.54e-109 | 333 |
| MS.gene39222.t1 | AT3G54740 | 40.825 | 485 | 178 | 14 | 1 | 454 | 1 | 407 | 4.89e-94 | 291 |
| MS.gene39222.t1 | AT3G54740 | 40.825 | 485 | 178 | 14 | 1 | 454 | 1 | 407 | 4.89e-94 | 291 |
| MS.gene39222.t1 | AT3G54740 | 40.825 | 485 | 178 | 14 | 1 | 454 | 1 | 407 | 4.89e-94 | 291 |
| MS.gene39222.t1 | AT3G54740 | 40.825 | 485 | 178 | 14 | 1 | 454 | 1 | 407 | 4.89e-94 | 291 |
| MS.gene39222.t1 | AT3G54740 | 41.135 | 423 | 148 | 13 | 55 | 454 | 15 | 359 | 7.77e-84 | 263 |
| MS.gene39222.t1 | AT3G54740 | 41.135 | 423 | 148 | 13 | 55 | 454 | 15 | 359 | 7.77e-84 | 263 |
| MS.gene39222.t1 | AT3G54740 | 41.135 | 423 | 148 | 13 | 55 | 454 | 15 | 359 | 7.77e-84 | 263 |
| MS.gene39222.t1 | AT3G54740 | 41.135 | 423 | 148 | 13 | 55 | 454 | 15 | 359 | 7.77e-84 | 263 |
| MS.gene39222.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 4.53e-20 | 91.3 |
| MS.gene39222.t1 | AT2G24140 | 48.913 | 92 | 47 | 0 | 77 | 168 | 30 | 121 | 4.53e-20 | 91.3 |
| MS.gene39222.t1 | AT4G30830 | 45.098 | 102 | 56 | 0 | 66 | 167 | 18 | 119 | 6.09e-20 | 91.7 |
| MS.gene39222.t1 | AT4G30830 | 45.098 | 102 | 56 | 0 | 66 | 167 | 18 | 119 | 6.09e-20 | 91.7 |
| MS.gene39222.t1 | AT1G70750 | 27.221 | 349 | 203 | 10 | 73 | 411 | 423 | 730 | 5.65e-19 | 90.5 |
| MS.gene39222.t1 | AT5G16720 | 40.833 | 120 | 71 | 0 | 46 | 165 | 340 | 459 | 1.04e-18 | 89.4 |
| MS.gene39222.t1 | AT5G57830 | 47.321 | 112 | 59 | 0 | 66 | 177 | 19 | 130 | 6.24e-18 | 85.9 |
| MS.gene39222.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 4.57e-17 | 84.3 |
| MS.gene39222.t1 | AT2G30690 | 42.308 | 104 | 58 | 1 | 58 | 159 | 606 | 709 | 4.57e-17 | 84.3 |
| MS.gene39222.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.17e-15 | 80.5 |
| MS.gene39222.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.17e-15 | 80.5 |
| MS.gene39222.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.17e-15 | 80.5 |
| MS.gene39222.t1 | AT1G08800 | 41.121 | 107 | 63 | 0 | 53 | 159 | 880 | 986 | 1.17e-15 | 80.5 |
| MS.gene39222.t1 | AT1G74830 | 41.739 | 115 | 64 | 1 | 59 | 173 | 301 | 412 | 1.08e-14 | 76.6 |
| MS.gene39222.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 1.89e-13 | 70.9 |
| MS.gene39222.t1 | AT2G24140 | 48.571 | 70 | 36 | 0 | 99 | 168 | 1 | 70 | 1.89e-13 | 70.9 |
| MS.gene39222.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 4.30e-12 | 68.6 |
| MS.gene39222.t1 | AT4G13630 | 42.453 | 106 | 60 | 1 | 59 | 163 | 217 | 322 | 4.30e-12 | 68.6 |
| MS.gene39222.t1 | AT1G18990 | 38.621 | 145 | 80 | 3 | 19 | 161 | 262 | 399 | 7.64e-12 | 67.8 |
| MS.gene39222.t1 | AT1G04890 | 41.346 | 104 | 47 | 1 | 71 | 160 | 105 | 208 | 9.98e-12 | 67.0 |
Find 96 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGCGTGGCTTGTCAAATT+TGG | 0.173314 | 1.2:-43365732 | None:intergenic |
| CTTAAACTTGTTATTGTTCT+TGG | 0.186369 | 1.2:-43365829 | None:intergenic |
| ACAATTGACTCTGTTCATTC+TGG | 0.200824 | 1.2:+43365942 | MS.gene39222:CDS |
| GAAGCACGATGAGTTTAAAT+TGG | 0.276035 | 1.2:+43365077 | MS.gene39222:CDS |
| AAACACAGGATGATGAGTTT+TGG | 0.300857 | 1.2:+43365438 | MS.gene39222:CDS |
| GCACCGGATAATGGCTTTAC+AGG | 0.308345 | 1.2:+43365966 | MS.gene39222:CDS |
| TCAGGAGGAACTTATGTCTT+TGG | 0.312375 | 1.2:+43365353 | MS.gene39222:CDS |
| TGATGATTCCCTGATTCCTT+TGG | 0.314429 | 1.2:-43366026 | None:intergenic |
| GTCGCTTACGTGTGAAGTTC+AGG | 0.334893 | 1.2:+43365410 | MS.gene39222:CDS |
| TTCAAATTTGAATTGTCCTC+TGG | 0.337959 | 1.2:-43365870 | None:intergenic |
| AAATGTAATGTCATGTATAA+TGG | 0.343360 | 1.2:+43365528 | MS.gene39222:CDS |
| TTCGCAGGCCTATGCTTTGA+TGG | 0.353860 | 1.2:-43367648 | None:intergenic |
| CATTCTGGGGCACCGGATAA+TGG | 0.354097 | 1.2:+43365957 | MS.gene39222:CDS |
| TTAAACTTGTTATTGTTCTT+GGG | 0.360855 | 1.2:-43365828 | None:intergenic |
| TTAAGGTCACTTACTTGCTT+TGG | 0.364399 | 1.2:-43366810 | None:intergenic |
| TATGCAGCAGAGAACGATTC+AGG | 0.369549 | 1.2:+43365176 | MS.gene39222:CDS |
| GAAGCTTTACATGAGGCTTC+AGG | 0.375689 | 1.2:+43366076 | MS.gene39222:CDS |
| TCCTCTGACTCAGCAACGTT+CGG | 0.376250 | 1.2:+43365762 | MS.gene39222:CDS |
| GCAACCAGTCCAAAGGAATC+AGG | 0.378139 | 1.2:+43366017 | MS.gene39222:CDS |
| AAGCTCCTCAAACGGTCATT+AGG | 0.378165 | 1.2:-43365606 | None:intergenic |
| GACAAGTACCGAGATCTTGC+AGG | 0.390060 | 1.2:-43366239 | None:intergenic |
| ATCATCGAAACCTCCAGCTT+TGG | 0.392724 | 1.2:-43365991 | None:intergenic |
| GTTTGAGGAGCTTGGAGAAT+AGG | 0.397127 | 1.2:+43365616 | MS.gene39222:CDS |
| TTCAGGCACTTGAGGCTGAT+AGG | 0.398288 | 1.2:+43366093 | MS.gene39222:CDS |
| CATGTAAAGCTTCTTAATGT+AGG | 0.398593 | 1.2:-43366066 | None:intergenic |
| GGCTTTACAGGTTCCAAAGC+TGG | 0.408092 | 1.2:+43365978 | MS.gene39222:CDS |
| GGTGGGATGTGTAAAGAAAT+AGG | 0.411105 | 1.2:+43365783 | MS.gene39222:CDS |
| CAATTGACTCTGTTCATTCT+GGG | 0.412467 | 1.2:+43365943 | MS.gene39222:CDS |
| ACCTGTGTCGTCGGTTGCGC+GGG | 0.422138 | 1.2:+43365110 | MS.gene39222:CDS |
| GGAGAATAGGATTTCTCAAA+TGG | 0.426445 | 1.2:+43365629 | MS.gene39222:CDS |
| TAATGACCGTTTGAGGAGCT+TGG | 0.436236 | 1.2:+43365608 | MS.gene39222:CDS |
| GGATTTGAATGAGGAGTTGG+AGG | 0.445102 | 1.2:+43365197 | MS.gene39222:CDS |
| ATTCCCTGATTCCTTTGGAC+TGG | 0.453675 | 1.2:-43366021 | None:intergenic |
| CTCTGTTCATTCTGGGGCAC+CGG | 0.453986 | 1.2:+43365950 | MS.gene39222:CDS |
| GGAGAAAATGACGCATGATC+AGG | 0.455281 | 1.2:+43365335 | MS.gene39222:CDS |
| TTGTTGAAATGTTGTGATTG+TGG | 0.462676 | 1.2:+43364997 | MS.gene39222:CDS |
| TCAGGATTTGAATGAGGAGT+TGG | 0.463110 | 1.2:+43365194 | MS.gene39222:CDS |
| TTTGAGGTTGCAGAGGGAAA+AGG | 0.465476 | 1.2:+43365269 | MS.gene39222:CDS |
| TTTGAATGAGGAGTTGGAGG+AGG | 0.470668 | 1.2:+43365200 | MS.gene39222:CDS |
| GATATTGAGAAATATGCATT+TGG | 0.470801 | 1.2:+43365576 | MS.gene39222:CDS |
| TTGTGGATGTAGTTGTTCCT+TGG | 0.472863 | 1.2:+43365014 | MS.gene39222:CDS |
| TGCTTCCACAGCTGCGAATG+AGG | 0.477326 | 1.2:+43365233 | MS.gene39222:CDS |
| GAACAATAACAAGTTTAAGA+AGG | 0.477803 | 1.2:+43365833 | MS.gene39222:CDS |
| GTTACGGAGAAAGTAATTGT+TGG | 0.483998 | 1.2:+43365702 | MS.gene39222:CDS |
| TTTAAAGGAGGGTATTCGTA+TGG | 0.487165 | 1.2:-43365507 | None:intergenic |
| GGAAAAGGCGGAAGTTCAAA+TGG | 0.490761 | 1.2:+43365284 | MS.gene39222:CDS |
| TGGATGTAGTTGTTCCTTGG+TGG | 0.490768 | 1.2:+43365017 | MS.gene39222:CDS |
| GAACCTGTAAAGCCATTATC+CGG | 0.491366 | 1.2:-43365969 | None:intergenic |
| GGACAATTCAAATTTGAAGA+AGG | 0.492097 | 1.2:+43365875 | MS.gene39222:CDS |
| ACCATCCACCTGGCTGTAAG+TGG | 0.503511 | 1.2:-43365661 | None:intergenic |
| TCAGGCACTTGAGGCTGATA+GGG | 0.504864 | 1.2:+43366094 | MS.gene39222:CDS |
| TTGTTCTTGGGAGACTCTGT+AGG | 0.505523 | 1.2:-43365816 | None:intergenic |
| CATGAGGCTTCAGGCACTTG+AGG | 0.506019 | 1.2:+43366085 | MS.gene39222:CDS |
| TACCTGTGTCGTCGGTTGCG+CGG | 0.506467 | 1.2:+43365109 | MS.gene39222:CDS |
| AGCACAGGTTGTGTTACTAA+AGG | 0.529757 | 1.2:+43366157 | MS.gene39222:CDS |
| TCTGACTCAGCAACGTTCGG+TGG | 0.530457 | 1.2:+43365765 | MS.gene39222:CDS |
| TGTTCTTGGGAGACTCTGTA+GGG | 0.530579 | 1.2:-43365815 | None:intergenic |
| ATGTAAAGCTTCTTAATGTA+GGG | 0.531958 | 1.2:-43366065 | None:intergenic |
| ATCACCTTCGACCTCATCCT+CGG | 0.533257 | 1.2:-43365466 | None:intergenic |
| AACGATTCAGGATTTGAATG+AGG | 0.533822 | 1.2:+43365188 | MS.gene39222:CDS |
| AAACTCCTAATGACCGTTTG+AGG | 0.535504 | 1.2:+43365601 | MS.gene39222:CDS |
| CATTGCCTCATTCGCAGCTG+TGG | 0.537747 | 1.2:-43365238 | None:intergenic |
| TTCAACAAATCCCTCGGAGA+TGG | 0.542740 | 1.2:-43364982 | None:intergenic |
| CAACCAGTCCAAAGGAATCA+GGG | 0.548648 | 1.2:+43366018 | MS.gene39222:CDS |
| AAAGGAGGGTATTCGTATGG+AGG | 0.549905 | 1.2:-43365504 | None:intergenic |
| TGATAGGGAATCAATGAGGC+AGG | 0.551938 | 1.2:+43366109 | MS.gene39222:CDS |
| CGAGCAAGCCTGCAAGATCT+CGG | 0.551994 | 1.2:+43366231 | MS.gene39222:CDS |
| GGGAGACTCTGTAGGGAACT+CGG | 0.562340 | 1.2:-43365808 | None:intergenic |
| TATTCTCCAAGCTCCTCAAA+CGG | 0.563369 | 1.2:-43365614 | None:intergenic |
| ACCGAACGTTGCTGAGTCAG+AGG | 0.583019 | 1.2:-43365763 | None:intergenic |
| CCCACTTACAGCCAGGTGGA+TGG | 0.583532 | 1.2:+43365660 | MS.gene39222:CDS |
| CTGACTCAGCAACGTTCGGT+GGG | 0.585081 | 1.2:+43365766 | MS.gene39222:CDS |
| ATGTGTTGTGTTACGTGAGA+TGG | 0.587855 | 1.2:+43365149 | MS.gene39222:CDS |
| CAATAAAATCACCATCCACC+TGG | 0.588402 | 1.2:-43365671 | None:intergenic |
| GAAAACTCCCACTTACAGCC+AGG | 0.590810 | 1.2:+43365653 | MS.gene39222:CDS |
| ATACAGTTCCATCAAAGCAT+AGG | 0.593020 | 1.2:+43367640 | MS.gene39222:intron |
| AAGGTAGATAATGCTTCAGA+AGG | 0.602096 | 1.2:+43365894 | MS.gene39222:CDS |
| AATGAGCACAGATAAAGCAC+AGG | 0.607100 | 1.2:+43366142 | MS.gene39222:CDS |
| CAACATTTCAACAAATCCCT+CGG | 0.610770 | 1.2:-43364988 | None:intergenic |
| TTTACAGGTTCCAAAGCTGG+AGG | 0.613417 | 1.2:+43365981 | MS.gene39222:CDS |
| AATTGACTCTGTTCATTCTG+GGG | 0.616386 | 1.2:+43365944 | MS.gene39222:CDS |
| TAATGTCATGTATAATGGCA+TGG | 0.619732 | 1.2:+43365533 | MS.gene39222:CDS |
| ACATTAAGAAGCTTTACATG+AGG | 0.620076 | 1.2:+43366069 | MS.gene39222:CDS |
| TGATTATGCAACCAGTCCAA+AGG | 0.622802 | 1.2:+43366010 | MS.gene39222:CDS |
| TTCAGAACATTGTTCCACCA+AGG | 0.625495 | 1.2:-43365031 | None:intergenic |
| AATGGATGCGATCTGTTAAG+CGG | 0.631622 | 1.2:+43365055 | MS.gene39222:CDS |
| ACCCGCGCAACCGACGACAC+AGG | 0.633336 | 1.2:-43365111 | None:intergenic |
| GAAAATGACGCATGATCAGG+AGG | 0.634038 | 1.2:+43365338 | MS.gene39222:CDS |
| CCATCCACCTGGCTGTAAGT+GGG | 0.639457 | 1.2:-43365660 | None:intergenic |
| TAGTGAATTACCTGTGTCGT+CGG | 0.646306 | 1.2:+43365101 | MS.gene39222:CDS |
| GAGGTTGCAGAGGGAAAAGG+CGG | 0.649166 | 1.2:+43365272 | MS.gene39222:CDS |
| AAGTTCAGGCTTATAAACAC+AGG | 0.657321 | 1.2:+43365424 | MS.gene39222:CDS |
| GGATTATTTCTCTCAACCAG+AGG | 0.660219 | 1.2:+43365854 | MS.gene39222:CDS |
| TACACCGAGGATGAGGTCGA+AGG | 0.669244 | 1.2:+43365462 | MS.gene39222:CDS |
| AACTCCCACTTACAGCCAGG+TGG | 0.685414 | 1.2:+43365656 | MS.gene39222:CDS |
| AGGCTGATAGGGAATCAATG+AGG | 0.730909 | 1.2:+43366105 | MS.gene39222:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTATTTTATTTTTTCATC+AGG | - | chr1.2:43366680-43366699 | None:intergenic | 15.0% |
| !!! | TATAAGTTATTTCAAAGATA+AGG | + | chr1.2:43367123-43367142 | MS.gene39222:intron | 15.0% |
| !!! | TGTATTTTATTTTTTCATCA+GGG | - | chr1.2:43366679-43366698 | None:intergenic | 15.0% |
| !!! | TTTTATTGGAAAAAATGTTA+CGG | + | chr1.2:43365686-43365705 | MS.gene39222:CDS | 15.0% |
| !! | AAATGTAATGTCATGTATAA+TGG | + | chr1.2:43365528-43365547 | MS.gene39222:CDS | 20.0% |
| !! | TTAAAGCATGTTTGAAAAAT+TGG | - | chr1.2:43366406-43366425 | None:intergenic | 20.0% |
| !! | TTGAAATAACTTATAAGCAT+AGG | - | chr1.2:43367118-43367137 | None:intergenic | 20.0% |
| !!! | TACATGACATTACATTTTAA+AGG | - | chr1.2:43365525-43365544 | None:intergenic | 20.0% |
| !!! | TACTGTACTTTTTGTTTTTT+TGG | + | chr1.2:43367576-43367595 | MS.gene39222:intron | 20.0% |
| !!! | TTAAACTTGTTATTGTTCTT+GGG | - | chr1.2:43365831-43365850 | None:intergenic | 20.0% |
| !!! | TTTTTCAAACATGCTTTAAT+TGG | + | chr1.2:43366407-43366426 | MS.gene39222:intron | 20.0% |
| ! | AAAAGCAAACAATGATGAAA+TGG | - | chr1.2:43366326-43366345 | None:intergenic | 25.0% |
| ! | AACTTTCAAAGATAAAGACA+TGG | - | chr1.2:43367182-43367201 | None:intergenic | 25.0% |
| ! | AGGAAACTAATGTATATAGA+AGG | - | chr1.2:43367341-43367360 | None:intergenic | 25.0% |
| ! | ATGTAAAGCTTCTTAATGTA+GGG | - | chr1.2:43366068-43366087 | None:intergenic | 25.0% |
| ! | GAACAATAACAAGTTTAAGA+AGG | + | chr1.2:43365833-43365852 | MS.gene39222:CDS | 25.0% |
| ! | GATATTGAGAAATATGCATT+TGG | + | chr1.2:43365576-43365595 | MS.gene39222:CDS | 25.0% |
| ! | GGAAACTAATGTATATAGAA+GGG | - | chr1.2:43367340-43367359 | None:intergenic | 25.0% |
| !! | CAATCAGTGTTGTTAAATAT+CGG | - | chr1.2:43366985-43367004 | None:intergenic | 25.0% |
| !! | GTAGTTCTTTTGAATTCAAA+TGG | + | chr1.2:43367092-43367111 | MS.gene39222:intron | 25.0% |
| !! | TTTCATGATAGATTTTGCAA+TGG | + | chr1.2:43366699-43366718 | MS.gene39222:intron | 25.0% |
| !!! | ATCTCTTTTTTTGTGTTTAG+TGG | + | chr1.2:43366752-43366771 | MS.gene39222:intron | 25.0% |
| !!! | ATGACATTACATTTTAAAGG+AGG | - | chr1.2:43365522-43365541 | None:intergenic | 25.0% |
| !!! | CTTAAACTTGTTATTGTTCT+TGG | - | chr1.2:43365832-43365851 | None:intergenic | 25.0% |
| !!! | TGACATTACATTTTAAAGGA+GGG | - | chr1.2:43365521-43365540 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTGGAACTTCTT+TGG | + | chr1.2:43367587-43367606 | MS.gene39222:intron | 25.0% |
| ACATTAAGAAGCTTTACATG+AGG | + | chr1.2:43366069-43366088 | MS.gene39222:CDS | 30.0% | |
| AGAACTACCTTCTCAATAAA+AGG | - | chr1.2:43367080-43367099 | None:intergenic | 30.0% | |
| AGTAGTCAGGAAAAATGTTA+AGG | - | chr1.2:43366830-43366849 | None:intergenic | 30.0% | |
| ATTGTTACATGTGTTATCGA+TGG | + | chr1.2:43366883-43366902 | MS.gene39222:intron | 30.0% | |
| CATGTAAAGCTTCTTAATGT+AGG | - | chr1.2:43366069-43366088 | None:intergenic | 30.0% | |
| CTAGATAACGTTTACATACA+GGG | - | chr1.2:43366543-43366562 | None:intergenic | 30.0% | |
| GGAAAACACTTCTTAATTGT+TGG | + | chr1.2:43367258-43367277 | MS.gene39222:intron | 30.0% | |
| GGACAATTCAAATTTGAAGA+AGG | + | chr1.2:43365875-43365894 | MS.gene39222:CDS | 30.0% | |
| TAATGTCATGTATAATGGCA+TGG | + | chr1.2:43365533-43365552 | MS.gene39222:CDS | 30.0% | |
| TATGAAGTTTCAATGACAAC+TGG | - | chr1.2:43367207-43367226 | None:intergenic | 30.0% | |
| TATTTCAATCTCACATCACT+AGG | - | chr1.2:43367023-43367042 | None:intergenic | 30.0% | |
| TTCAAATTTGAATTGTCCTC+TGG | - | chr1.2:43365873-43365892 | None:intergenic | 30.0% | |
| TTCTCAATAAAAGGACTTCT+GGG | - | chr1.2:43367071-43367090 | None:intergenic | 30.0% | |
| TTGATGGAACTGTATCAATA+TGG | - | chr1.2:43367635-43367654 | None:intergenic | 30.0% | |
| TTGTTGAAATGTTGTGATTG+TGG | + | chr1.2:43364997-43365016 | MS.gene39222:CDS | 30.0% | |
| ! | ATAGAAGGGAGTATGAATTT+GGG | - | chr1.2:43367326-43367345 | None:intergenic | 30.0% |
| ! | TATAGAAGGGAGTATGAATT+TGG | - | chr1.2:43367327-43367346 | None:intergenic | 30.0% |
| ! | TCGGTACTTGTCAATTTTTA+AGG | + | chr1.2:43366250-43366269 | MS.gene39222:CDS | 30.0% |
| !! | CTTTGGTAGTTTTTGAAAGT+TGG | + | chr1.2:43367604-43367623 | MS.gene39222:intron | 30.0% |
| !! | TGGAACAATGTTCTGAAAAA+TGG | + | chr1.2:43365037-43365056 | MS.gene39222:CDS | 30.0% |
| !!! | AGATCAGAGTATTTTTTGTG+AGG | - | chr1.2:43366603-43366622 | None:intergenic | 30.0% |
| !!! | ATCAGAGTATTTTTTGTGAG+GGG | - | chr1.2:43366601-43366620 | None:intergenic | 30.0% |
| !!! | GATCAGAGTATTTTTTGTGA+GGG | - | chr1.2:43366602-43366621 | None:intergenic | 30.0% |
| !!! | GGATCACATCAATTGTTTTT+TGG | + | chr1.2:43366773-43366792 | MS.gene39222:CDS | 30.0% |
| AACGATTCAGGATTTGAATG+AGG | + | chr1.2:43365188-43365207 | MS.gene39222:CDS | 35.0% | |
| AAGGTAGATAATGCTTCAGA+AGG | + | chr1.2:43365894-43365913 | MS.gene39222:CDS | 35.0% | |
| AAGTTCAGGCTTATAAACAC+AGG | + | chr1.2:43365424-43365443 | MS.gene39222:CDS | 35.0% | |
| AATGTTAGTACAGTGCATGT+TGG | - | chr1.2:43367301-43367320 | None:intergenic | 35.0% | |
| ACATTTAGTGTGTTAGTCAC+CGG | + | chr1.2:43367517-43367536 | MS.gene39222:intron | 35.0% | |
| ACTAACACACTAAATGTTGC+CGG | - | chr1.2:43367514-43367533 | None:intergenic | 35.0% | |
| ACTAACAGACTTAATGTTGC+CGG | - | chr1.2:43367539-43367558 | None:intergenic | 35.0% | |
| ATGTTAGTACAGTGCATGTT+GGG | - | chr1.2:43367300-43367319 | None:intergenic | 35.0% | |
| CAACATTTCAACAAATCCCT+CGG | - | chr1.2:43364991-43365010 | None:intergenic | 35.0% | |
| CCTAGATAACGTTTACATAC+AGG | - | chr1.2:43366544-43366563 | None:intergenic | 35.0% | |
| CCTGTATGTAAACGTTATCT+AGG | + | chr1.2:43366541-43366560 | MS.gene39222:intron | 35.0% | |
| CTTCTCAATAAAAGGACTTC+TGG | - | chr1.2:43367072-43367091 | None:intergenic | 35.0% | |
| GAAGCACGATGAGTTTAAAT+TGG | + | chr1.2:43365077-43365096 | MS.gene39222:CDS | 35.0% | |
| GGAGAATAGGATTTCTCAAA+TGG | + | chr1.2:43365629-43365648 | MS.gene39222:CDS | 35.0% | |
| GTTACGGAGAAAGTAATTGT+TGG | + | chr1.2:43365702-43365721 | MS.gene39222:CDS | 35.0% | |
| TAGTTTCCTCTTTCTAACAC+CGG | + | chr1.2:43367492-43367511 | MS.gene39222:intron | 35.0% | |
| TTAAGGTCACTTACTTGCTT+TGG | - | chr1.2:43366813-43366832 | None:intergenic | 35.0% | |
| ! | AAACACAGGATGATGAGTTT+TGG | + | chr1.2:43365438-43365457 | MS.gene39222:CDS | 35.0% |
| ! | AACACAGGATGATGAGTTTT+GGG | + | chr1.2:43365439-43365458 | MS.gene39222:CDS | 35.0% |
| ! | AACTTCATAGCATCTAGCTT+TGG | + | chr1.2:43367218-43367237 | MS.gene39222:intron | 35.0% |
| ! | AATTGACTCTGTTCATTCTG+GGG | + | chr1.2:43365944-43365963 | MS.gene39222:CDS | 35.0% |
| ! | ACAATTGACTCTGTTCATTC+TGG | + | chr1.2:43365942-43365961 | MS.gene39222:CDS | 35.0% |
| ! | CAATTGACTCTGTTCATTCT+GGG | + | chr1.2:43365943-43365962 | MS.gene39222:CDS | 35.0% |
| ! | CAGAAGTCCTTTTATTGAGA+AGG | + | chr1.2:43367070-43367089 | MS.gene39222:intron | 35.0% |
| ! | TATGTATGTTCTGAGTAGTC+AGG | - | chr1.2:43366843-43366862 | None:intergenic | 35.0% |
| ! | TCAATTTAAGCGTTTTGCAG+AGG | + | chr1.2:43365314-43365333 | MS.gene39222:CDS | 35.0% |
| !! | CTCGTACTCATTTTTCTTTG+CGG | - | chr1.2:43366215-43366234 | None:intergenic | 35.0% |
| !! | TTGGTTTTCAAAGTGCGTAT+GGG | + | chr1.2:43367237-43367256 | MS.gene39222:intron | 35.0% |
| !! | TTTAAAGGAGGGTATTCGTA+TGG | - | chr1.2:43365510-43365529 | None:intergenic | 35.0% |
| !!! | TCAGAGTATTTTTTGTGAGG+GGG | - | chr1.2:43366600-43366619 | None:intergenic | 35.0% |
| !!! | TTTGGTTTTCAAAGTGCGTA+TGG | + | chr1.2:43367236-43367255 | MS.gene39222:intron | 35.0% |
| AAACTCCTAATGACCGTTTG+AGG | + | chr1.2:43365601-43365620 | MS.gene39222:CDS | 40.0% | |
| AATGAGCACAGATAAAGCAC+AGG | + | chr1.2:43366142-43366161 | MS.gene39222:CDS | 40.0% | |
| AATGGATGCGATCTGTTAAG+CGG | + | chr1.2:43365055-43365074 | MS.gene39222:CDS | 40.0% | |
| AGGGAAACTGAACCTTTAGA+GGG | - | chr1.2:43366524-43366543 | None:intergenic | 40.0% | |
| AGTTTCCTCTTTAACCCACT+TGG | + | chr1.2:43367353-43367372 | MS.gene39222:intron | 40.0% | |
| ATGTGTTGTGTTACGTGAGA+TGG | + | chr1.2:43365149-43365168 | MS.gene39222:CDS | 40.0% | |
| ATTCTCCTCGGTACCAATTT+CGG | + | chr1.2:43367438-43367457 | MS.gene39222:intron | 40.0% | |
| CAATAAAATCACCATCCACC+TGG | - | chr1.2:43365674-43365693 | None:intergenic | 40.0% | |
| GAACCTGTAAAGCCATTATC+CGG | - | chr1.2:43365972-43365991 | None:intergenic | 40.0% | |
| GGTGGGATGTGTAAAGAAAT+AGG | + | chr1.2:43365783-43365802 | MS.gene39222:CDS | 40.0% | |
| GTTACATGTGTTATCGATGG+AGG | + | chr1.2:43366886-43366905 | MS.gene39222:intron | 40.0% | |
| GTTTCCTCTTTAACCCACTT+GGG | + | chr1.2:43367354-43367373 | MS.gene39222:intron | 40.0% | |
| TAGTGAATTACCTGTGTCGT+CGG | + | chr1.2:43365101-43365120 | MS.gene39222:CDS | 40.0% | |
| TATTCTCCAAGCTCCTCAAA+CGG | - | chr1.2:43365617-43365636 | None:intergenic | 40.0% | |
| TCAGGAGGAACTTATGTCTT+TGG | + | chr1.2:43365353-43365372 | MS.gene39222:CDS | 40.0% | |
| TCAGGATTTGAATGAGGAGT+TGG | + | chr1.2:43365194-43365213 | MS.gene39222:CDS | 40.0% | |
| TGATGATTCCCTGATTCCTT+TGG | - | chr1.2:43366029-43366048 | None:intergenic | 40.0% | |
| TGATTATGCAACCAGTCCAA+AGG | + | chr1.2:43366010-43366029 | MS.gene39222:CDS | 40.0% | |
| TTCAGAACATTGTTCCACCA+AGG | - | chr1.2:43365034-43365053 | None:intergenic | 40.0% | |
| TTGTGGATGTAGTTGTTCCT+TGG | + | chr1.2:43365014-43365033 | MS.gene39222:CDS | 40.0% | |
| TTTATGGCGGCTTAAAATGG+CGG | - | chr1.2:43366924-43366943 | None:intergenic | 40.0% | |
| ! | AGCACAGGTTGTGTTACTAA+AGG | + | chr1.2:43366157-43366176 | MS.gene39222:CDS | 40.0% |
| ! | AGGCAATGTCGATGATTTTG+AGG | + | chr1.2:43365253-43365272 | MS.gene39222:CDS | 40.0% |
| ! | CACTGCCATCCTTTAAAAAC+TGG | + | chr1.2:43366953-43366972 | MS.gene39222:intron | 40.0% |
| ! | CAGGTGGATGGTGATTTTAT+TGG | + | chr1.2:43365672-43365691 | MS.gene39222:CDS | 40.0% |
| ! | CATCCTTTAAAAACTGGCCA+TGG | + | chr1.2:43366959-43366978 | MS.gene39222:intron | 40.0% |
| ! | CGTTTTATGGCGGCTTAAAA+TGG | - | chr1.2:43366927-43366946 | None:intergenic | 40.0% |
| ! | GGATTATTTCTCTCAACCAG+AGG | + | chr1.2:43365854-43365873 | MS.gene39222:CDS | 40.0% |
| ! | GTGTTGTTAAATATCGGCCA+TGG | - | chr1.2:43366979-43366998 | None:intergenic | 40.0% |
| !! | CATGGCCAGTTTTTAAAGGA+TGG | - | chr1.2:43366961-43366980 | None:intergenic | 40.0% |
| !!! | GATGATTTTGAGGTTGCAGA+GGG | + | chr1.2:43365263-43365282 | MS.gene39222:CDS | 40.0% |
| !!! | TTTTTTGTGAGGGGGAAGAT+CGG | - | chr1.2:43366592-43366611 | None:intergenic | 40.0% |
| AAGCTCCTCAAACGGTCATT+AGG | - | chr1.2:43365609-43365628 | None:intergenic | 45.0% | |
| AGGCTGATAGGGAATCAATG+AGG | + | chr1.2:43366105-43366124 | MS.gene39222:CDS | 45.0% | |
| ATCATCGAAACCTCCAGCTT+TGG | - | chr1.2:43365994-43366013 | None:intergenic | 45.0% | |
| ATTCCCTGATTCCTTTGGAC+TGG | - | chr1.2:43366024-43366043 | None:intergenic | 45.0% | |
| CAACCAGTCCAAAGGAATCA+GGG | + | chr1.2:43366018-43366037 | MS.gene39222:CDS | 45.0% | |
| CAGGGAAACTGAACCTTTAG+AGG | - | chr1.2:43366525-43366544 | None:intergenic | 45.0% | |
| CTAAACTAGCCCACCGAAAT+TGG | - | chr1.2:43367454-43367473 | None:intergenic | 45.0% | |
| CTGTATGTGTGTGTGTGATC+TGG | + | chr1.2:43366624-43366643 | MS.gene39222:intron | 45.0% | |
| GAAAATGACGCATGATCAGG+AGG | + | chr1.2:43365338-43365357 | MS.gene39222:CDS | 45.0% | |
| GAAGCTTTACATGAGGCTTC+AGG | + | chr1.2:43366076-43366095 | MS.gene39222:CDS | 45.0% | |
| GAATCGAACCTAAGACCTTG+AGG | - | chr1.2:43367422-43367441 | None:intergenic | 45.0% | |
| GGAAAAAGTTCCATCTCCGA+GGG | + | chr1.2:43364972-43364991 | MS.gene39222:CDS | 45.0% | |
| GGAAAAGGCGGAAGTTCAAA+TGG | + | chr1.2:43365284-43365303 | MS.gene39222:CDS | 45.0% | |
| GGAGAAAATGACGCATGATC+AGG | + | chr1.2:43365335-43365354 | MS.gene39222:CDS | 45.0% | |
| GGATTTGAATGAGGAGTTGG+AGG | + | chr1.2:43365197-43365216 | MS.gene39222:CDS | 45.0% | |
| GTCTTAGGTTCGATTCTCCT+CGG | + | chr1.2:43367426-43367445 | MS.gene39222:intron | 45.0% | |
| GTTTGAGGAGCTTGGAGAAT+AGG | + | chr1.2:43365616-43365635 | MS.gene39222:CDS | 45.0% | |
| TAATGACCGTTTGAGGAGCT+TGG | + | chr1.2:43365608-43365627 | MS.gene39222:CDS | 45.0% | |
| TATGCAGCAGAGAACGATTC+AGG | + | chr1.2:43365176-43365195 | MS.gene39222:CDS | 45.0% | |
| TGATAGGGAATCAATGAGGC+AGG | + | chr1.2:43366109-43366128 | MS.gene39222:CDS | 45.0% | |
| TGGATGTAGTTGTTCCTTGG+TGG | + | chr1.2:43365017-43365036 | MS.gene39222:CDS | 45.0% | |
| TGTTCTTGGGAGACTCTGTA+GGG | - | chr1.2:43365818-43365837 | None:intergenic | 45.0% | |
| TTCAACAAATCCCTCGGAGA+TGG | - | chr1.2:43364985-43365004 | None:intergenic | 45.0% | |
| TTGTTCTTGGGAGACTCTGT+AGG | - | chr1.2:43365819-43365838 | None:intergenic | 45.0% | |
| TTTAAAGGATGGCAGTGCCA+TGG | - | chr1.2:43366950-43366969 | None:intergenic | 45.0% | |
| TTTACAGGTTCCAAAGCTGG+AGG | + | chr1.2:43365981-43366000 | MS.gene39222:CDS | 45.0% | |
| TTTGAATGAGGAGTTGGAGG+AGG | + | chr1.2:43365200-43365219 | MS.gene39222:CDS | 45.0% | |
| ! | ATGTTGCCGGTGTTAGAAAG+AGG | - | chr1.2:43367501-43367520 | None:intergenic | 45.0% |
| ! | CAGAGGAAAATTTTCTCGCG+TGG | - | chr1.2:43365749-43365768 | None:intergenic | 45.0% |
| ! | TGAACCTTTAGAGGGAGCAA+GGG | - | chr1.2:43366516-43366535 | None:intergenic | 45.0% |
| ! | TTTGAGGTTGCAGAGGGAAA+AGG | + | chr1.2:43365269-43365288 | MS.gene39222:CDS | 45.0% |
| !! | AAAGGAGGGTATTCGTATGG+AGG | - | chr1.2:43365507-43365526 | None:intergenic | 45.0% |
| !!! | CGATGATTTTGAGGTTGCAG+AGG | + | chr1.2:43365262-43365281 | MS.gene39222:CDS | 45.0% |
| ATCACCTTCGACCTCATCCT+CGG | - | chr1.2:43365469-43365488 | None:intergenic | 50.0% | |
| ATCTCCCTTGCTCCCTCTAA+AGG | + | chr1.2:43366509-43366528 | MS.gene39222:intron | 50.0% | |
| CCTCTTTAACCCACTTGGGT+TGG | + | chr1.2:43367358-43367377 | MS.gene39222:intron | 50.0% | |
| CGGAAAAAGTTCCATCTCCG+AGG | + | chr1.2:43364971-43364990 | MS.gene39222:CDS | 50.0% | |
| GAAAACTCCCACTTACAGCC+AGG | + | chr1.2:43365653-43365672 | MS.gene39222:CDS | 50.0% | |
| GCAACCAGTCCAAAGGAATC+AGG | + | chr1.2:43366017-43366036 | MS.gene39222:CDS | 50.0% | |
| GGCTTTACAGGTTCCAAAGC+TGG | + | chr1.2:43365978-43365997 | MS.gene39222:CDS | 50.0% | |
| GGGGGAAGATCGGTATACAA+AGG | - | chr1.2:43366582-43366601 | None:intergenic | 50.0% | |
| GTCGCTTACGTGTGAAGTTC+AGG | + | chr1.2:43365410-43365429 | MS.gene39222:CDS | 50.0% | |
| GTGTGATCTGGCAATGCATG+CGG | + | chr1.2:43366636-43366655 | MS.gene39222:intron | 50.0% | |
| TAAGCCGCCATAAAACGCCA+TGG | + | chr1.2:43366930-43366949 | MS.gene39222:intron | 50.0% | |
| TCAGGCACTTGAGGCTGATA+GGG | + | chr1.2:43366094-43366113 | MS.gene39222:CDS | 50.0% | |
| TCCTCGGTACCAATTTCGGT+GGG | + | chr1.2:43367442-43367461 | MS.gene39222:intron | 50.0% | |
| TCCTCTGACTCAGCAACGTT+CGG | + | chr1.2:43365762-43365781 | MS.gene39222:CDS | 50.0% | |
| TCGAACCTAAGACCTTGAGG+AGG | - | chr1.2:43367419-43367438 | None:intergenic | 50.0% | |
| TTCAGGCACTTGAGGCTGAT+AGG | + | chr1.2:43366093-43366112 | MS.gene39222:CDS | 50.0% | |
| ! | AGTGCCATGGCGTTTTATGG+CGG | - | chr1.2:43366937-43366956 | None:intergenic | 50.0% |
| ! | CGGCCATGGCCAGTTTTTAA+AGG | - | chr1.2:43366965-43366984 | None:intergenic | 50.0% |
| ! | CTCGCGTGGCTTGTCAAATT+TGG | - | chr1.2:43365735-43365754 | None:intergenic | 50.0% |
| ! | CTGAACCTTTAGAGGGAGCA+AGG | - | chr1.2:43366517-43366536 | None:intergenic | 50.0% |
| ! | GCACCGGATAATGGCTTTAC+AGG | + | chr1.2:43365966-43365985 | MS.gene39222:CDS | 50.0% |
| ! | TTGTAGAGTGCTCCTCCTCA+AGG | + | chr1.2:43367404-43367423 | MS.gene39222:intron | 50.0% |
| !! | CCAACCCAAGTGGGTTAAAG+AGG | - | chr1.2:43367361-43367380 | None:intergenic | 50.0% |
| !! | GACAAGTACCGAGATCTTGC+AGG | - | chr1.2:43366242-43366261 | None:intergenic | 50.0% |
| !! | TTAACCCACTTGGGTTGGCT+CGG | + | chr1.2:43367363-43367382 | MS.gene39222:intron | 50.0% |
| !! | TTGAGGAGGAGCACTCTACA+AGG | - | chr1.2:43367405-43367424 | None:intergenic | 50.0% |
| !! | TTTTGGGTACACCGAGGATG+AGG | + | chr1.2:43365455-43365474 | MS.gene39222:CDS | 50.0% |
| !!! | GATGAGTTTTGGGTACACCG+AGG | + | chr1.2:43365449-43365468 | MS.gene39222:CDS | 50.0% |
| AACTCCCACTTACAGCCAGG+TGG | + | chr1.2:43365656-43365675 | MS.gene39222:CDS | 55.0% | |
| ACCATCCACCTGGCTGTAAG+TGG | - | chr1.2:43365664-43365683 | None:intergenic | 55.0% | |
| ACCGAACGTTGCTGAGTCAG+AGG | - | chr1.2:43365766-43365785 | None:intergenic | 55.0% | |
| CATGAGGCTTCAGGCACTTG+AGG | + | chr1.2:43366085-43366104 | MS.gene39222:CDS | 55.0% | |
| CATTGCCTCATTCGCAGCTG+TGG | - | chr1.2:43365241-43365260 | None:intergenic | 55.0% | |
| CCATCCACCTGGCTGTAAGT+GGG | - | chr1.2:43365663-43365682 | None:intergenic | 55.0% | |
| CGAGCAAGCCTGCAAGATCT+CGG | + | chr1.2:43366231-43366250 | MS.gene39222:CDS | 55.0% | |
| CTCCTCGGTACCAATTTCGG+TGG | + | chr1.2:43367441-43367460 | MS.gene39222:intron | 55.0% | |
| CTGACTCAGCAACGTTCGGT+GGG | + | chr1.2:43365766-43365785 | MS.gene39222:CDS | 55.0% | |
| GAGGTTGCAGAGGGAAAAGG+CGG | + | chr1.2:43365272-43365291 | MS.gene39222:CDS | 55.0% | |
| GGGAGACTCTGTAGGGAACT+CGG | - | chr1.2:43365811-43365830 | None:intergenic | 55.0% | |
| GTGCTCCTCCTCAAGGTCTT+AGG | + | chr1.2:43367411-43367430 | MS.gene39222:intron | 55.0% | |
| TACACCGAGGATGAGGTCGA+AGG | + | chr1.2:43365462-43365481 | MS.gene39222:CDS | 55.0% | |
| TCTGACTCAGCAACGTTCGG+TGG | + | chr1.2:43365765-43365784 | MS.gene39222:CDS | 55.0% | |
| TGCTTCCACAGCTGCGAATG+AGG | + | chr1.2:43365233-43365252 | MS.gene39222:CDS | 55.0% | |
| ! | GGCAGTGCCATGGCGTTTTA+TGG | - | chr1.2:43366940-43366959 | None:intergenic | 55.0% |
| !! | CATTCTGGGGCACCGGATAA+TGG | + | chr1.2:43365957-43365976 | MS.gene39222:CDS | 55.0% |
| !! | CTCTGTTCATTCTGGGGCAC+CGG | + | chr1.2:43365950-43365969 | MS.gene39222:CDS | 55.0% |
| !! | TGGCTCGGAGGTGTTAGCTT+TGG | + | chr1.2:43367378-43367397 | MS.gene39222:intron | 55.0% |
| ACCTCCGAGCCAACCCAAGT+GGG | - | chr1.2:43367370-43367389 | None:intergenic | 60.0% | |
| CCCACTTACAGCCAGGTGGA+TGG | + | chr1.2:43365660-43365679 | MS.gene39222:CDS | 60.0% | |
| GCCCACCGAAATTGGTACCG+AGG | - | chr1.2:43367446-43367465 | None:intergenic | 60.0% | |
| ! | TACCTGTGTCGTCGGTTGCG+CGG | + | chr1.2:43365109-43365128 | MS.gene39222:CDS | 60.0% |
| CACCTCCGAGCCAACCCAAG+TGG | - | chr1.2:43367371-43367390 | None:intergenic | 65.0% | |
| ! | ACCTGTGTCGTCGGTTGCGC+GGG | + | chr1.2:43365110-43365129 | MS.gene39222:CDS | 65.0% |
| !! | ACCCACTTGGGTTGGCTCGG+AGG | + | chr1.2:43367366-43367385 | MS.gene39222:intron | 65.0% |
| ACCCGCGCAACCGACGACAC+AGG | - | chr1.2:43365114-43365133 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 43364964 | 43367661 | 43364964 | ID=MS.gene39222 |
| chr1.2 | mRNA | 43364964 | 43367661 | 43364964 | ID=MS.gene39222.t1;Parent=MS.gene39222 |
| chr1.2 | exon | 43364964 | 43366271 | 43364964 | ID=MS.gene39222.t1.exon1;Parent=MS.gene39222.t1 |
| chr1.2 | CDS | 43364964 | 43366271 | 43364964 | ID=cds.MS.gene39222.t1;Parent=MS.gene39222.t1 |
| chr1.2 | exon | 43366772 | 43366818 | 43366772 | ID=MS.gene39222.t1.exon2;Parent=MS.gene39222.t1 |
| chr1.2 | CDS | 43366772 | 43366818 | 43366772 | ID=cds.MS.gene39222.t1;Parent=MS.gene39222.t1 |
| chr1.2 | exon | 43367646 | 43367661 | 43367646 | ID=MS.gene39222.t1.exon3;Parent=MS.gene39222.t1 |
| chr1.2 | CDS | 43367646 | 43367661 | 43367646 | ID=cds.MS.gene39222.t1;Parent=MS.gene39222.t1 |
| Gene Sequence |
| Protein sequence |
