Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009935.t1 | XP_003615555.1 | 97.8 | 410 | 9 | 0 | 1 | 410 | 1 | 410 | 1.60E-194 | 688.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009935.t1 | Q9SSE5 | 55.4 | 424 | 121 | 12 | 1 | 409 | 1 | 371 | 2.5e-79 | 297.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009935.t1 | G7KE22 | 97.8 | 410 | 9 | 0 | 1 | 410 | 1 | 410 | 1.2e-194 | 688.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene009935.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88720 | MS.gene009935 | PPI |
| MS.gene70471 | MS.gene009935 | PPI |
| MS.gene044331 | MS.gene009935 | PPI |
| MS.gene43742 | MS.gene009935 | PPI |
| MS.gene25698 | MS.gene009935 | PPI |
| MS.gene44846 | MS.gene009935 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009935.t1 | MTR_5g069480 | 97.805 | 410 | 9 | 0 | 1 | 410 | 1 | 410 | 0.0 | 826 |
| MS.gene009935.t1 | MTR_5g069480 | 97.015 | 268 | 8 | 0 | 1 | 268 | 1 | 268 | 0.0 | 537 |
| MS.gene009935.t1 | MTR_3g082630 | 68.434 | 415 | 120 | 7 | 1 | 409 | 1 | 410 | 0.0 | 536 |
| MS.gene009935.t1 | MTR_2g088900 | 34.452 | 447 | 224 | 15 | 1 | 404 | 97 | 517 | 2.36e-68 | 225 |
| MS.gene009935.t1 | MTR_1g109350 | 49.138 | 116 | 55 | 2 | 1 | 115 | 1 | 113 | 6.87e-30 | 118 |
| MS.gene009935.t1 | MTR_7g108150 | 49.505 | 101 | 50 | 1 | 5 | 105 | 20 | 119 | 6.06e-29 | 116 |
| MS.gene009935.t1 | MTR_7g108150 | 54.902 | 51 | 23 | 0 | 344 | 394 | 319 | 369 | 3.04e-11 | 65.1 |
| MS.gene009935.t1 | MTR_7g083540 | 41.509 | 106 | 56 | 1 | 5 | 104 | 5 | 110 | 3.13e-21 | 95.1 |
| MS.gene009935.t1 | MTR_7g083540 | 67.347 | 49 | 16 | 0 | 349 | 397 | 337 | 385 | 1.46e-14 | 75.1 |
| MS.gene009935.t1 | MTR_1g013450 | 32.164 | 171 | 105 | 3 | 4 | 167 | 5 | 171 | 5.30e-20 | 90.5 |
| MS.gene009935.t1 | MTR_1g013450 | 41.463 | 82 | 39 | 1 | 313 | 394 | 224 | 296 | 7.87e-12 | 66.2 |
| MS.gene009935.t1 | MTR_3g105710 | 43.333 | 90 | 51 | 0 | 4 | 93 | 5 | 94 | 6.13e-19 | 87.0 |
| MS.gene009935.t1 | MTR_3g105710 | 54.902 | 51 | 23 | 0 | 350 | 400 | 229 | 279 | 2.03e-11 | 64.7 |
| MS.gene009935.t1 | MTR_4g128930 | 43.333 | 90 | 51 | 0 | 4 | 93 | 21 | 110 | 1.80e-18 | 86.7 |
| MS.gene009935.t1 | MTR_4g128930 | 61.702 | 47 | 18 | 0 | 352 | 398 | 297 | 343 | 2.53e-11 | 65.1 |
| MS.gene009935.t1 | MTR_7g018170 | 42.857 | 91 | 52 | 0 | 5 | 95 | 26 | 116 | 3.15e-17 | 83.2 |
| MS.gene009935.t1 | MTR_3g117320 | 31.795 | 195 | 101 | 8 | 1 | 182 | 1 | 176 | 4.46e-14 | 71.6 |
| MS.gene009935.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 8.05e-14 | 71.2 |
| MS.gene009935.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 8.40e-14 | 70.9 |
| MS.gene009935.t1 | MTR_4g071200 | 36.082 | 97 | 52 | 1 | 1 | 87 | 1 | 97 | 2.07e-13 | 69.7 |
| MS.gene009935.t1 | MTR_1g023260 | 32.990 | 97 | 55 | 1 | 1 | 87 | 1 | 97 | 4.09e-13 | 68.2 |
| MS.gene009935.t1 | MTR_1g023260 | 32.990 | 97 | 55 | 1 | 1 | 87 | 1 | 97 | 6.32e-13 | 68.9 |
| MS.gene009935.t1 | MTR_3g113070 | 31.633 | 98 | 56 | 1 | 1 | 87 | 1 | 98 | 4.48e-12 | 65.9 |
| MS.gene009935.t1 | MTR_2g099010 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 1.30e-11 | 64.7 |
| MS.gene009935.t1 | MTR_2g099010 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 1.31e-11 | 64.7 |
| MS.gene009935.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 2.15e-11 | 62.8 |
| MS.gene009935.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 2.71e-11 | 62.8 |
| MS.gene009935.t1 | MTR_2g073370 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 3.45e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009935.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 2.13e-139 | 403 |
| MS.gene009935.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 2.13e-139 | 403 |
| MS.gene009935.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 2.13e-139 | 403 |
| MS.gene009935.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 2.13e-139 | 403 |
| MS.gene009935.t1 | AT5G48250 | 52.941 | 425 | 131 | 13 | 1 | 409 | 1 | 372 | 9.46e-138 | 399 |
| MS.gene009935.t1 | AT4G15250 | 54.717 | 106 | 46 | 1 | 1 | 106 | 1 | 104 | 4.01e-35 | 132 |
| MS.gene009935.t1 | AT4G15250 | 54.737 | 95 | 42 | 1 | 309 | 403 | 233 | 326 | 1.64e-20 | 92.0 |
| MS.gene009935.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 2.97e-33 | 129 |
| MS.gene009935.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 352 | 395 | 355 | 398 | 2.80e-13 | 71.2 |
| MS.gene009935.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 3.05e-33 | 129 |
| MS.gene009935.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 352 | 395 | 356 | 399 | 2.81e-13 | 71.2 |
| MS.gene009935.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 1.13e-32 | 127 |
| MS.gene009935.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 256 | 365 | 5.94e-25 | 105 |
| MS.gene009935.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 1.13e-32 | 127 |
| MS.gene009935.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 256 | 365 | 5.94e-25 | 105 |
| MS.gene009935.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 1 | 114 | 1.14e-32 | 126 |
| MS.gene009935.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 252 | 361 | 6.64e-25 | 105 |
| MS.gene009935.t1 | AT1G28050 | 41.935 | 124 | 70 | 1 | 5 | 128 | 9 | 130 | 2.03e-31 | 124 |
| MS.gene009935.t1 | AT1G28050 | 30.168 | 179 | 110 | 4 | 224 | 397 | 261 | 429 | 3.21e-13 | 71.2 |
| MS.gene009935.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 1.58e-28 | 115 |
| MS.gene009935.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 1.58e-28 | 115 |
| MS.gene009935.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 39 | 144 | 2.64e-28 | 115 |
| MS.gene009935.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 1.84e-27 | 109 |
| MS.gene009935.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 5.59e-27 | 109 |
| MS.gene009935.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 7.20e-27 | 110 |
| MS.gene009935.t1 | AT2G47890 | 51.923 | 52 | 25 | 0 | 346 | 397 | 280 | 331 | 6.78e-11 | 63.5 |
| MS.gene009935.t1 | AT5G57660 | 27.295 | 403 | 198 | 10 | 5 | 402 | 22 | 334 | 1.98e-26 | 109 |
| MS.gene009935.t1 | AT5G24930 | 45.556 | 90 | 49 | 0 | 4 | 93 | 5 | 94 | 1.47e-20 | 92.8 |
| MS.gene009935.t1 | AT5G24930 | 60.784 | 51 | 20 | 0 | 348 | 398 | 290 | 340 | 1.50e-12 | 68.9 |
| MS.gene009935.t1 | AT2G24790 | 43.333 | 90 | 51 | 0 | 4 | 93 | 7 | 96 | 4.00e-19 | 87.4 |
| MS.gene009935.t1 | AT2G24790 | 50.847 | 59 | 29 | 0 | 344 | 402 | 220 | 278 | 8.28e-12 | 65.9 |
| MS.gene009935.t1 | AT2G24790 | 43.333 | 90 | 51 | 0 | 4 | 93 | 7 | 96 | 4.03e-19 | 85.9 |
| MS.gene009935.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 1.38e-17 | 84.3 |
| MS.gene009935.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 1.96e-17 | 82.4 |
| MS.gene009935.t1 | AT5G15850 | 45.349 | 86 | 47 | 0 | 5 | 90 | 12 | 97 | 6.30e-17 | 82.0 |
| MS.gene009935.t1 | AT5G15850 | 51.613 | 62 | 27 | 2 | 333 | 394 | 269 | 327 | 4.42e-11 | 64.3 |
| MS.gene009935.t1 | AT3G02380 | 38.835 | 103 | 57 | 1 | 5 | 101 | 16 | 118 | 1.53e-15 | 77.8 |
| MS.gene009935.t1 | AT3G02380 | 66.667 | 42 | 14 | 0 | 353 | 394 | 278 | 319 | 1.98e-11 | 65.5 |
| MS.gene009935.t1 | AT1G06040 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 1.48e-13 | 68.9 |
| MS.gene009935.t1 | AT1G06040 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 2.81e-13 | 69.7 |
| MS.gene009935.t1 | AT2G31380 | 34.375 | 96 | 54 | 1 | 1 | 87 | 1 | 96 | 2.89e-13 | 69.7 |
| MS.gene009935.t1 | AT4G38960 | 26.857 | 175 | 106 | 4 | 1 | 166 | 1 | 162 | 2.80e-12 | 65.5 |
| MS.gene009935.t1 | AT4G38960 | 26.857 | 175 | 106 | 4 | 1 | 166 | 1 | 162 | 2.80e-12 | 65.5 |
| MS.gene009935.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 5.71e-12 | 66.6 |
| MS.gene009935.t1 | AT1G75540 | 33.333 | 99 | 54 | 1 | 1 | 87 | 1 | 99 | 6.13e-12 | 66.6 |
| MS.gene009935.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 6.17e-12 | 66.6 |
| MS.gene009935.t1 | AT2G21320 | 36.842 | 95 | 50 | 2 | 1 | 87 | 1 | 93 | 8.46e-11 | 60.8 |
Find 83 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGACACACTCTTGCTTTC+TGG | 0.104463 | 5.3:-55205245 | None:intergenic |
| AGAAGGGATGTCGGAGAAAA+AGG | 0.264198 | 5.3:-55205147 | None:intergenic |
| CTTCCGAGCTTTCTTCAATA+TGG | 0.271446 | 5.3:+55205123 | MS.gene009935:CDS |
| GATGCAGCATTGCTGCATTC+TGG | 0.314142 | 5.3:-55207386 | None:intergenic |
| AGTGTAAACTCAGCAGCTTC+TGG | 0.321377 | 5.3:-55209062 | None:intergenic |
| CAATCAATCAATTGCTTCTC+TGG | 0.329875 | 5.3:+55205089 | MS.gene009935:CDS |
| TTCTCACAGGGGAGCCTCCC+TGG | 0.331546 | 5.3:+55207543 | MS.gene009935:CDS |
| CAATGCTGTCATGCGTTATA+AGG | 0.336608 | 5.3:+55207610 | MS.gene009935:CDS |
| CTGGTTCAAAATACGGGGTT+TGG | 0.355047 | 5.3:-55205342 | None:intergenic |
| TACCTTAGGCATAAGTTCAT+TGG | 0.357652 | 5.3:-55205378 | None:intergenic |
| CTTTCCGTAAAATAAATAAC+TGG | 0.358970 | 5.3:-55207440 | None:intergenic |
| CACTTTGTCAGAACTGTGAT+TGG | 0.369730 | 5.3:+55205024 | MS.gene009935:CDS |
| TTGCGGAGACCAGAGGTCTT+TGG | 0.371869 | 5.3:+55204848 | MS.gene009935:CDS |
| TCACATGCTTCACCTGTAGA+AGG | 0.379099 | 5.3:-55205164 | None:intergenic |
| TTTCCCCAGCTTTGACGAAC+CGG | 0.416476 | 5.3:-55209012 | None:intergenic |
| CAGCTTCTGGTTTGACTCAA+AGG | 0.419857 | 5.3:-55209049 | None:intergenic |
| CGGGCGCCTGGTTCAAAATA+CGG | 0.425108 | 5.3:-55205349 | None:intergenic |
| AAAGGCCGGTTCGTCAAAGC+TGG | 0.426807 | 5.3:+55209007 | MS.gene009935:CDS |
| TTGCTTCTCTGGCTGTCCTT+CGG | 0.430721 | 5.3:+55205100 | MS.gene009935:CDS |
| CATAAGTTCATTGGAAGATC+CGG | 0.431154 | 5.3:-55205369 | None:intergenic |
| GGGCGCCTGGTTCAAAATAC+GGG | 0.445144 | 5.3:-55205348 | None:intergenic |
| ACGGGGTTTGGCACTTGACT+CGG | 0.451656 | 5.3:-55205330 | None:intergenic |
| TTCTCCGACATCCCTTCTAC+AGG | 0.456610 | 5.3:+55205152 | MS.gene009935:CDS |
| AGCAGATTGAATAGAATTCT+CGG | 0.457491 | 5.3:-55207579 | None:intergenic |
| AGAACAGTGACAACAGTGCC+AGG | 0.462494 | 5.3:+55205216 | MS.gene009935:CDS |
| GCAGATTGAATAGAATTCTC+GGG | 0.465896 | 5.3:-55207578 | None:intergenic |
| AGCTTCTGGTTTGACTCAAA+GGG | 0.472965 | 5.3:-55209048 | None:intergenic |
| CTCGGGGCAAGGAGGACACC+AGG | 0.476613 | 5.3:-55207561 | None:intergenic |
| CATTGGAAGATCCGGGCGCC+TGG | 0.483294 | 5.3:-55205361 | None:intergenic |
| AGAAAGTAAGATATGCTTCT+CGG | 0.490575 | 5.3:+55208954 | MS.gene009935:CDS |
| CGGGGTTTGGCACTTGACTC+GGG | 0.498437 | 5.3:-55205329 | None:intergenic |
| TAGTGCAGGAGCCTTTCTGC+TGG | 0.501364 | 5.3:-55206407 | None:intergenic |
| CTTGCTTTCTGGAGGAACCC+TGG | 0.509409 | 5.3:-55205234 | None:intergenic |
| TCGATCACACGACAAACATA+AGG | 0.512174 | 5.3:-55204895 | None:intergenic |
| TTGCCTCTTGTGTGTTGAAG+AGG | 0.512520 | 5.3:-55205069 | None:intergenic |
| TGATTTCAACATAGATGAGA+TGG | 0.515486 | 5.3:+55206453 | MS.gene009935:CDS |
| ACTTCTTCAATGCTTCTCAC+AGG | 0.517555 | 5.3:+55207530 | MS.gene009935:CDS |
| TCAGAAAACGTGTGAAAGGC+CGG | 0.518186 | 5.3:+55208993 | MS.gene009935:CDS |
| CTCTTGTGTGTTGAAGAGGA+TGG | 0.523560 | 5.3:-55205065 | None:intergenic |
| TGTTAACGCCAGAAAATGAA+AGG | 0.527986 | 5.3:-55207472 | None:intergenic |
| TTCCAATGAACTTATGCCTA+AGG | 0.528385 | 5.3:+55205376 | MS.gene009935:CDS |
| ATAAGTTCATTGGAAGATCC+GGG | 0.534550 | 5.3:-55205368 | None:intergenic |
| GGCAGTACACCAAAGACCTC+TGG | 0.535687 | 5.3:-55204857 | None:intergenic |
| CTTCTTCAATGCTTCTCACA+GGG | 0.540534 | 5.3:+55207531 | MS.gene009935:CDS |
| GATATGCTTCTCGGAAGGCA+AGG | 0.543762 | 5.3:+55208963 | MS.gene009935:CDS |
| TGAATAGAATTCTCGGGGCA+AGG | 0.546742 | 5.3:-55207572 | None:intergenic |
| AACTGTGATTGGTCAGCTCA+TGG | 0.551188 | 5.3:+55205035 | MS.gene009935:CDS |
| CAGCATTGCTGCATTCTGGT+TGG | 0.554970 | 5.3:-55207382 | None:intergenic |
| TGTGTCTAGTTCAGCTCAAG+TGG | 0.556351 | 5.3:+55205259 | MS.gene009935:CDS |
| AAAGACATGTCTGCTAGTGC+TGG | 0.564402 | 5.3:+55206574 | MS.gene009935:CDS |
| TCAACACACCTCACATATGC+AGG | 0.564586 | 5.3:-55204990 | None:intergenic |
| TTATCATCTTCACATAGTGC+AGG | 0.566113 | 5.3:-55206421 | None:intergenic |
| TCAAGGCGCTGTTGCTGCTG+AGG | 0.568931 | 5.3:+55206609 | MS.gene009935:CDS |
| GATGTCAGAAAACGTGTGAA+AGG | 0.569991 | 5.3:+55208989 | MS.gene009935:CDS |
| AGTGCAGGAGCCTTTCTGCT+GGG | 0.574032 | 5.3:-55206406 | None:intergenic |
| ATATGCTTCTCGGAAGGCAA+GGG | 0.575562 | 5.3:+55208964 | MS.gene009935:CDS |
| GTTACTATGTCCCAGCAGAA+AGG | 0.575589 | 5.3:+55206396 | MS.gene009935:intron |
| GGGCCATATTGAAGAAAGCT+CGG | 0.577030 | 5.3:-55205126 | None:intergenic |
| CACATGCTTCACCTGTAGAA+GGG | 0.579054 | 5.3:-55205163 | None:intergenic |
| CAAACATAAGGAAGCAGCAT+CGG | 0.579320 | 5.3:-55204883 | None:intergenic |
| AAGGCCGGTTCGTCAAAGCT+GGG | 0.589643 | 5.3:+55209008 | MS.gene009935:CDS |
| GTGTGTTGAAGAGGATGGAT+TGG | 0.598104 | 5.3:-55205060 | None:intergenic |
| GACACACTCTTGCTTTCTGG+AGG | 0.608462 | 5.3:-55205242 | None:intergenic |
| TGTGAAGATGATAAGTTGCT+TGG | 0.611126 | 5.3:+55206430 | MS.gene009935:CDS |
| AGTAAGATATGCTTCTCGGA+AGG | 0.619208 | 5.3:+55208958 | MS.gene009935:CDS |
| GAAGAAAGCTCGGAAGCCGA+AGG | 0.625937 | 5.3:-55205116 | None:intergenic |
| CATCCTCTTCAACACACAAG+AGG | 0.627085 | 5.3:+55205066 | MS.gene009935:CDS |
| GTTAACAAAGATACTAGTGC+TGG | 0.627470 | 5.3:+55207488 | MS.gene009935:CDS |
| TCGGGGCAAGGAGGACACCA+GGG | 0.628096 | 5.3:-55207560 | None:intergenic |
| CAGATTGAATAGAATTCTCG+GGG | 0.628312 | 5.3:-55207577 | None:intergenic |
| TTCACCTGTAGAAGGGATGT+CGG | 0.629907 | 5.3:-55205156 | None:intergenic |
| GGCGCCTGGTTCAAAATACG+GGG | 0.642690 | 5.3:-55205347 | None:intergenic |
| GCTGGTGATTCAAATTGTCA+AGG | 0.642760 | 5.3:+55206592 | MS.gene009935:CDS |
| CAAGAACACTTGTATGCGAG+AGG | 0.643376 | 5.3:+55204955 | MS.gene009935:CDS |
| TTCTTCAATGCTTCTCACAG+GGG | 0.656918 | 5.3:+55207532 | MS.gene009935:CDS |
| AGGCCGGTTCGTCAAAGCTG+GGG | 0.660571 | 5.3:+55209009 | MS.gene009935:CDS |
| GGGCAAGGAGGACACCAGGG+AGG | 0.662427 | 5.3:-55207557 | None:intergenic |
| GAACAGTGACAACAGTGCCA+GGG | 0.668906 | 5.3:+55205217 | MS.gene009935:CDS |
| GAAGCATGTGAACATAAACT+CGG | 0.691379 | 5.3:+55205176 | MS.gene009935:CDS |
| ATAAGGAAGCAGCATCGGAG+CGG | 0.698842 | 5.3:-55204878 | None:intergenic |
| ATTTACAACCTGCATATGTG+AGG | 0.728365 | 5.3:+55204982 | MS.gene009935:CDS |
| ATAGAATTCTCGGGGCAAGG+AGG | 0.730840 | 5.3:-55207569 | None:intergenic |
| GCTGGTGACTATCAAGAGTG+TGG | 0.743394 | 5.3:+55207506 | MS.gene009935:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGTCTTTATTAAAAAA+CGG | - | chr5.3:55207883-55207902 | None:intergenic | 10.0% |
| !! | AAATAAAATAATACTACTTG+TGG | + | chr5.3:55208241-55208260 | MS.gene009935:intron | 15.0% |
| !! | TTTATATGTTAGTTGTTTAA+TGG | + | chr5.3:55205640-55205659 | MS.gene009935:intron | 15.0% |
| !!! | AAAGAATAAGAGATTTTTTA+AGG | - | chr5.3:55208023-55208042 | None:intergenic | 15.0% |
| !!! | ACATACTTTTTTAATCAAAT+TGG | - | chr5.3:55205874-55205893 | None:intergenic | 15.0% |
| !! | AAACCTTCAAATGAATATAA+AGG | - | chr5.3:55207139-55207158 | None:intergenic | 20.0% |
| !! | AAATGAATATAAAGGACTTA+AGG | - | chr5.3:55207131-55207150 | None:intergenic | 20.0% |
| !! | AATACAAAACCTATAAAACT+AGG | - | chr5.3:55207288-55207307 | None:intergenic | 20.0% |
| !! | CATTCATATCAATTACATAA+TGG | - | chr5.3:55205936-55205955 | None:intergenic | 20.0% |
| !! | TGAATTAGTTACTGTATTTA+TGG | + | chr5.3:55205965-55205984 | MS.gene009935:intron | 20.0% |
| !! | TTAAAGTAGTTGCAAATATA+TGG | + | chr5.3:55208701-55208720 | MS.gene009935:intron | 20.0% |
| !! | TTATCTATAACTTAAGATAG+AGG | - | chr5.3:55205535-55205554 | None:intergenic | 20.0% |
| !!! | AAAGGTATTAAATATTGTAC+TGG | - | chr5.3:55208661-55208680 | None:intergenic | 20.0% |
| !!! | TAATAAAGACATTTAAAGCT+AGG | + | chr5.3:55207888-55207907 | MS.gene009935:intron | 20.0% |
| !!! | TATCTAAACTTCTGTTTTTA+GGG | + | chr5.3:55207332-55207351 | MS.gene009935:intron | 20.0% |
| !!! | TATTTATAGTTTGCTTTTGT+TGG | + | chr5.3:55208047-55208066 | MS.gene009935:intron | 20.0% |
| !!! | TGAACCAGTTATTTATTTTA+CGG | + | chr5.3:55207436-55207455 | MS.gene009935:CDS | 20.0% |
| !!! | TGCAACTACTTTAAAAATAA+GGG | - | chr5.3:55208695-55208714 | None:intergenic | 20.0% |
| !!! | TGCTATTTTGCATTTAAAAT+TGG | + | chr5.3:55208768-55208787 | MS.gene009935:intron | 20.0% |
| !!! | TTGCAACTACTTTAAAAATA+AGG | - | chr5.3:55208696-55208715 | None:intergenic | 20.0% |
| ! | AAGCTATTAATTAGATGTGA+TGG | + | chr5.3:55205560-55205579 | MS.gene009935:intron | 25.0% |
| ! | AATAATACTACTTGTGGAAA+TGG | + | chr5.3:55208247-55208266 | MS.gene009935:intron | 25.0% |
| ! | AGTCCTTTATATTCATTTGA+AGG | + | chr5.3:55207133-55207152 | MS.gene009935:intron | 25.0% |
| ! | CATGAGAGATTAAATAAGAA+AGG | - | chr5.3:55206365-55206384 | None:intergenic | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | - | chr5.3:55208444-55208463 | None:intergenic | 25.0% |
| ! | CCAAAATTATAGCTAACAAA+GGG | - | chr5.3:55206651-55206670 | None:intergenic | 25.0% |
| ! | CTTTCCGTAAAATAAATAAC+TGG | - | chr5.3:55207443-55207462 | None:intergenic | 25.0% |
| ! | GAACAATTATACATGTACAT+AGG | - | chr5.3:55206149-55206168 | None:intergenic | 25.0% |
| ! | GATACTATTTACATATCCAA+TGG | + | chr5.3:55207668-55207687 | MS.gene009935:intron | 25.0% |
| ! | GTACATGTATAATTGTTCTT+GGG | + | chr5.3:55206151-55206170 | MS.gene009935:intron | 25.0% |
| ! | TAAAATTATATCAACGCCAT+TGG | - | chr5.3:55207687-55207706 | None:intergenic | 25.0% |
| ! | TAATTGATATGAATGTCGTT+AGG | + | chr5.3:55205941-55205960 | MS.gene009935:intron | 25.0% |
| ! | TATTTAATACCTTTCTCCAA+TGG | + | chr5.3:55208667-55208686 | MS.gene009935:intron | 25.0% |
| ! | TCTCTATTGATCTTATTCTT+AGG | + | chr5.3:55207986-55208005 | MS.gene009935:intron | 25.0% |
| ! | TGTACATGTATAATTGTTCT+TGG | + | chr5.3:55206150-55206169 | MS.gene009935:intron | 25.0% |
| ! | TTACTTATAATCTCAAAGCT+TGG | + | chr5.3:55208879-55208898 | MS.gene009935:intron | 25.0% |
| !! | TAGGAATGTGTTATTATTCA+TGG | - | chr5.3:55207839-55207858 | None:intergenic | 25.0% |
| !! | TATTAAGTGTTGTCAAATAG+TGG | + | chr5.3:55206873-55206892 | MS.gene009935:intron | 25.0% |
| !! | TTCTAGTCAAATGATTCTTT+TGG | + | chr5.3:55205687-55205706 | MS.gene009935:intron | 25.0% |
| !! | TTTTGAACTTGAGAACTATA+CGG | + | chr5.3:55206477-55206496 | MS.gene009935:CDS | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr5.3:55208479-55208498 | MS.gene009935:intron | 25.0% |
| !!! | AGAGATTTTTTAAGGTAGTT+TGG | - | chr5.3:55208015-55208034 | None:intergenic | 25.0% |
| !!! | ATCTAAACTTCTGTTTTTAG+GGG | + | chr5.3:55207333-55207352 | MS.gene009935:intron | 25.0% |
| !!! | CAGTTATTTATTTTACGGAA+AGG | + | chr5.3:55207441-55207460 | MS.gene009935:CDS | 25.0% |
| !!! | GTATCTAAACTTCTGTTTTT+AGG | + | chr5.3:55207331-55207350 | MS.gene009935:intron | 25.0% |
| !!! | TCTGAAGAGTTTTTTGAAAA+TGG | + | chr5.3:55206526-55206545 | MS.gene009935:CDS | 25.0% |
| !!! | TTTAAAAATAAGGGTACCAT+TGG | - | chr5.3:55208686-55208705 | None:intergenic | 25.0% |
| AAACTTGAACTAATTGCTAC+TGG | + | chr5.3:55206770-55206789 | MS.gene009935:intron | 30.0% | |
| AAATCATGAAGCTATACCTT+AGG | - | chr5.3:55205395-55205414 | None:intergenic | 30.0% | |
| AGAAAGTAAGATATGCTTCT+CGG | + | chr5.3:55208954-55208973 | MS.gene009935:CDS | 30.0% | |
| AGAGGGATAGAATATTGTAT+TGG | + | chr5.3:55208533-55208552 | MS.gene009935:intron | 30.0% | |
| AGCAGATTGAATAGAATTCT+CGG | - | chr5.3:55207582-55207601 | None:intergenic | 30.0% | |
| ATACAGACACGAAACAATAA+AGG | - | chr5.3:55205733-55205752 | None:intergenic | 30.0% | |
| ATTATATAACATACACCCTC+CGG | - | chr5.3:55208501-55208520 | None:intergenic | 30.0% | |
| CATCTGGAAAACCATTAAAA+TGG | - | chr5.3:55207915-55207934 | None:intergenic | 30.0% | |
| CTGAAAACTGAGGAATAAAA+AGG | - | chr5.3:55208160-55208179 | None:intergenic | 30.0% | |
| CTTTCTTATCAAACCTGAAA+TGG | - | chr5.3:55208940-55208959 | None:intergenic | 30.0% | |
| GCCAAAATTATAGCTAACAA+AGG | - | chr5.3:55206652-55206671 | None:intergenic | 30.0% | |
| GCGGTAGTAATAAATAGAAT+AGG | + | chr5.3:55208197-55208216 | MS.gene009935:intron | 30.0% | |
| GTAATAGTTATTCTTCTCAG+TGG | - | chr5.3:55208571-55208590 | None:intergenic | 30.0% | |
| TACAATATTCTATCCCTCTT+TGG | - | chr5.3:55208532-55208551 | None:intergenic | 30.0% | |
| TACAGACACGAAACAATAAA+GGG | - | chr5.3:55205732-55205751 | None:intergenic | 30.0% | |
| TGATTTCAACATAGATGAGA+TGG | + | chr5.3:55206453-55206472 | MS.gene009935:CDS | 30.0% | |
| TGGTGTAAAACAATGAGAAT+AGG | - | chr5.3:55207819-55207838 | None:intergenic | 30.0% | |
| TGTATAATTGTTCTTGGGTT+TGG | + | chr5.3:55206156-55206175 | MS.gene009935:intron | 30.0% | |
| TTCAGTTCACTGAAATGATT+AGG | + | chr5.3:55208175-55208194 | MS.gene009935:intron | 30.0% | |
| TTCTCTGAATGAATTGTTTG+TGG | + | chr5.3:55205483-55205502 | MS.gene009935:intron | 30.0% | |
| TTTAGTGAAATGAGTTACAC+AGG | + | chr5.3:55206334-55206353 | MS.gene009935:intron | 30.0% | |
| TTTCAAAAAACTCTTCAGAG+TGG | - | chr5.3:55206525-55206544 | None:intergenic | 30.0% | |
| ! | AGAACATTTAGTTTCCTTTG+GGG | + | chr5.3:55207261-55207280 | MS.gene009935:intron | 30.0% |
| ! | AGAGAACATTTAGTTTCCTT+TGG | + | chr5.3:55207259-55207278 | MS.gene009935:intron | 30.0% |
| ! | AGGAATAAAAAGGTATAGCA+TGG | - | chr5.3:55208150-55208169 | None:intergenic | 30.0% |
| ! | CAATCAAACCTTTCATTTTC+TGG | + | chr5.3:55207464-55207483 | MS.gene009935:CDS | 30.0% |
| ! | CCCTTTGTTAGCTATAATTT+TGG | + | chr5.3:55206648-55206667 | MS.gene009935:intron | 30.0% |
| ! | CGTTGATATAATTTTACCTG+TGG | + | chr5.3:55207691-55207710 | MS.gene009935:intron | 30.0% |
| ! | GAGAACATTTAGTTTCCTTT+GGG | + | chr5.3:55207260-55207279 | MS.gene009935:intron | 30.0% |
| ! | GTTTGTGGAAATTTGTTTGA+CGG | + | chr5.3:55205498-55205517 | MS.gene009935:intron | 30.0% |
| ! | TAAAGCTAGGTCCATTTTAA+TGG | + | chr5.3:55207901-55207920 | MS.gene009935:intron | 30.0% |
| ! | TAGTCAAATGATTCTTTTGG+CGG | + | chr5.3:55205690-55205709 | MS.gene009935:intron | 30.0% |
| ! | TTCACAAAGTGTTATGGTAA+TGG | - | chr5.3:55208090-55208109 | None:intergenic | 30.0% |
| !! | ACTGTATTTATGGTCTTGTT+CGG | + | chr5.3:55205975-55205994 | MS.gene009935:intron | 30.0% |
| !! | ATCTGCTCATGTTTTTGTTA+TGG | + | chr5.3:55207740-55207759 | MS.gene009935:intron | 30.0% |
| !!! | GAAGAGTTTTTTGAAAATGG+TGG | + | chr5.3:55206529-55206548 | MS.gene009935:CDS | 30.0% |
| !!! | TTTGTTTTTGCTTGGAAGAT+CGG | - | chr5.3:55205285-55205304 | None:intergenic | 30.0% |
| AAACGCATAATATGAGACAG+AGG | - | chr5.3:55208596-55208615 | None:intergenic | 35.0% | |
| AACGCATAATATGAGACAGA+GGG | - | chr5.3:55208595-55208614 | None:intergenic | 35.0% | |
| ACAGACACGAAACAATAAAG+GGG | - | chr5.3:55205731-55205750 | None:intergenic | 35.0% | |
| AGAAAACCTTAGACAACATC+TGG | - | chr5.3:55207931-55207950 | None:intergenic | 35.0% | |
| AGTTCACTGAAATGATTAGG+CGG | + | chr5.3:55208178-55208197 | MS.gene009935:intron | 35.0% | |
| ATAAGTTCATTGGAAGATCC+GGG | - | chr5.3:55205371-55205390 | None:intergenic | 35.0% | |
| ATACATGTACATAGGTGACA+AGG | - | chr5.3:55206141-55206160 | None:intergenic | 35.0% | |
| ATACTATGAATTACACCCTC+TGG | + | chr5.3:55208348-55208367 | MS.gene009935:intron | 35.0% | |
| ATTTACAACCTGCATATGTG+AGG | + | chr5.3:55204982-55205001 | MS.gene009935:CDS | 35.0% | |
| CAATAGAGACATTAGAGAGA+AGG | - | chr5.3:55207975-55207994 | None:intergenic | 35.0% | |
| CAATCAATCAATTGCTTCTC+TGG | + | chr5.3:55205089-55205108 | MS.gene009935:CDS | 35.0% | |
| CAGATTGAATAGAATTCTCG+GGG | - | chr5.3:55207580-55207599 | None:intergenic | 35.0% | |
| CATAAGTTCATTGGAAGATC+CGG | - | chr5.3:55205372-55205391 | None:intergenic | 35.0% | |
| CATATTGCAGTTACAAGACT+AGG | - | chr5.3:55205427-55205446 | None:intergenic | 35.0% | |
| CATCTCAAATTGTGGTCTTT+GGG | + | chr5.3:55206059-55206078 | MS.gene009935:intron | 35.0% | |
| CTATAGACTGATCTTCTAGT+CGG | + | chr5.3:55207020-55207039 | MS.gene009935:intron | 35.0% | |
| CTCAGTTATGTGACATGTAA+CGG | - | chr5.3:55206697-55206716 | None:intergenic | 35.0% | |
| CTTCCAAGCAAAAACAAATC+TGG | + | chr5.3:55205287-55205306 | MS.gene009935:CDS | 35.0% | |
| GAAGCATGTGAACATAAACT+CGG | + | chr5.3:55205176-55205195 | MS.gene009935:CDS | 35.0% | |
| GCAGATTGAATAGAATTCTC+GGG | - | chr5.3:55207581-55207600 | None:intergenic | 35.0% | |
| GTTAACAAAGATACTAGTGC+TGG | + | chr5.3:55207488-55207507 | MS.gene009935:CDS | 35.0% | |
| GTTCAAGCTACTGATAAATC+AGG | - | chr5.3:55205780-55205799 | None:intergenic | 35.0% | |
| TACCTTAGGCATAAGTTCAT+TGG | - | chr5.3:55205381-55205400 | None:intergenic | 35.0% | |
| TATCACTATTGCACCAATGT+TGG | - | chr5.3:55206740-55206759 | None:intergenic | 35.0% | |
| TCAAAGCTTGGTTGCTATAT+GGG | + | chr5.3:55208891-55208910 | MS.gene009935:intron | 35.0% | |
| TCATCTCAAATTGTGGTCTT+TGG | + | chr5.3:55206058-55206077 | MS.gene009935:intron | 35.0% | |
| TGACACATCATCTCAAATTG+TGG | + | chr5.3:55206051-55206070 | MS.gene009935:intron | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | - | chr5.3:55208366-55208385 | None:intergenic | 35.0% | |
| TGGGGAAATGAAATGTTAAG+TGG | + | chr5.3:55206091-55206110 | MS.gene009935:intron | 35.0% | |
| TGTGAAGATGATAAGTTGCT+TGG | + | chr5.3:55206430-55206449 | MS.gene009935:CDS | 35.0% | |
| TGTTAACGCCAGAAAATGAA+AGG | - | chr5.3:55207475-55207494 | None:intergenic | 35.0% | |
| TTATCATCTTCACATAGTGC+AGG | - | chr5.3:55206424-55206443 | None:intergenic | 35.0% | |
| TTCATAGCGTTGTACAATAC+CGG | + | chr5.3:55206793-55206812 | MS.gene009935:intron | 35.0% | |
| TTCCAATGAACTTATGCCTA+AGG | + | chr5.3:55205376-55205395 | MS.gene009935:CDS | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | - | chr5.3:55208367-55208386 | None:intergenic | 35.0% | |
| TTGTTCTGCTATACGCTATT+TGG | + | chr5.3:55206850-55206869 | MS.gene009935:intron | 35.0% | |
| TTTCAGTGAACTGAAAACTG+AGG | - | chr5.3:55208170-55208189 | None:intergenic | 35.0% | |
| ! | AGTTCGTTCACAAAGTGTTA+TGG | - | chr5.3:55208096-55208115 | None:intergenic | 35.0% |
| ! | GTTATGATGAATGCCATTTC+AGG | + | chr5.3:55208924-55208943 | MS.gene009935:intron | 35.0% |
| ! | TTTGATAGAGTTGATCGAGT+AGG | - | chr5.3:55207858-55207877 | None:intergenic | 35.0% |
| ACTACTTGTGGAAATGGTGA+TGG | + | chr5.3:55208253-55208272 | MS.gene009935:intron | 40.0% | |
| ACTTCTTCAATGCTTCTCAC+AGG | + | chr5.3:55207530-55207549 | MS.gene009935:CDS | 40.0% | |
| AGTAAGATATGCTTCTCGGA+AGG | + | chr5.3:55208958-55208977 | MS.gene009935:CDS | 40.0% | |
| AGTAGCTTGAACTTCAAAGC+AGG | + | chr5.3:55205788-55205807 | MS.gene009935:intron | 40.0% | |
| ATAATGCGATCAGCCAAAGA+GGG | + | chr5.3:55208516-55208535 | MS.gene009935:intron | 40.0% | |
| ATTTCGCTACACTATTGCAC+CGG | - | chr5.3:55206815-55206834 | None:intergenic | 40.0% | |
| CAAACATAAGGAAGCAGCAT+CGG | - | chr5.3:55204886-55204905 | None:intergenic | 40.0% | |
| CAATGCTGTCATGCGTTATA+AGG | + | chr5.3:55207610-55207629 | MS.gene009935:CDS | 40.0% | |
| CACTTTGTCAGAACTGTGAT+TGG | + | chr5.3:55205024-55205043 | MS.gene009935:CDS | 40.0% | |
| CTATAAAACTAGGACCCCAA+AGG | - | chr5.3:55207278-55207297 | None:intergenic | 40.0% | |
| CTCAAAGCTTGGTTGCTATA+TGG | + | chr5.3:55208890-55208909 | MS.gene009935:intron | 40.0% | |
| CTTCATTTCAACGTTCCAAG+AGG | + | chr5.3:55206000-55206019 | MS.gene009935:intron | 40.0% | |
| CTTCCGAGCTTTCTTCAATA+TGG | + | chr5.3:55205123-55205142 | MS.gene009935:CDS | 40.0% | |
| CTTCTTCAATGCTTCTCACA+GGG | + | chr5.3:55207531-55207550 | MS.gene009935:CDS | 40.0% | |
| GATGTCAGAAAACGTGTGAA+AGG | + | chr5.3:55208989-55209008 | MS.gene009935:CDS | 40.0% | |
| GCAATATGTTTGTCGCACAA+CGG | + | chr5.3:55205439-55205458 | MS.gene009935:intron | 40.0% | |
| GCTGGTGATTCAAATTGTCA+AGG | + | chr5.3:55206592-55206611 | MS.gene009935:CDS | 40.0% | |
| TACCTTCAGTCCATGTGATT+AGG | + | chr5.3:55205841-55205860 | MS.gene009935:intron | 40.0% | |
| TATAATGCGATCAGCCAAAG+AGG | + | chr5.3:55208515-55208534 | MS.gene009935:intron | 40.0% | |
| TCGATCACACGACAAACATA+AGG | - | chr5.3:55204898-55204917 | None:intergenic | 40.0% | |
| TGCACAGCTCTATAGGTAAT+GGG | - | chr5.3:55206969-55206988 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr5.3:55208483-55208502 | MS.gene009935:intron | 40.0% | |
| TTCTTCAATGCTTCTCACAG+GGG | + | chr5.3:55207532-55207551 | MS.gene009935:CDS | 40.0% | |
| TTGAACTTCAAAGCAGGAAC+AGG | + | chr5.3:55205794-55205813 | MS.gene009935:intron | 40.0% | |
| TTGATTTCTCTACAATGCCC+AGG | - | chr5.3:55206992-55207011 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr5.3:55208482-55208501 | MS.gene009935:intron | 40.0% | |
| ! | GCAAAGAAACAATAGCCTTG+CGG | + | chr5.3:55206242-55206261 | MS.gene009935:intron | 40.0% |
| ! | GGTTCTCTATGCGATTTTTG+CGG | + | chr5.3:55204831-55204850 | MS.gene009935:CDS | 40.0% |
| ! | GGTTTTCCAGATGTTGTCTA+AGG | + | chr5.3:55207922-55207941 | MS.gene009935:intron | 40.0% |
| !! | AAGTGTTATGGTAATGGCTG+AGG | - | chr5.3:55208084-55208103 | None:intergenic | 40.0% |
| !! | AGCTTCTGGTTTGACTCAAA+GGG | - | chr5.3:55209051-55209070 | None:intergenic | 40.0% |
| !! | AGTGTTATGGTAATGGCTGA+GGG | - | chr5.3:55208083-55208102 | None:intergenic | 40.0% |
| !! | ATAAGGGTACCATTGGAGAA+AGG | - | chr5.3:55208679-55208698 | None:intergenic | 40.0% |
| !! | GGTCTTTGGGTTTTGATGAT+GGG | + | chr5.3:55206072-55206091 | MS.gene009935:intron | 40.0% |
| !! | GGTGTTTTTGCTCAGAATTC+AGG | + | chr5.3:55208274-55208293 | MS.gene009935:intron | 40.0% |
| !! | TGGTCTTTGGGTTTTGATGA+TGG | + | chr5.3:55206071-55206090 | MS.gene009935:intron | 40.0% |
| !!! | ACGCCAGATTTGTTTTTGCT+TGG | - | chr5.3:55205293-55205312 | None:intergenic | 40.0% |
| !!! | CTTTGGGGTCCTAGTTTTAT+AGG | + | chr5.3:55207276-55207295 | MS.gene009935:intron | 40.0% |
| !!! | GTCTTTGGGTTTTGATGATG+GGG | + | chr5.3:55206073-55206092 | MS.gene009935:intron | 40.0% |
| !!! | GTTACTTTTACGTCAACCAC+AGG | - | chr5.3:55207710-55207729 | None:intergenic | 40.0% |
| AAAGACATGTCTGCTAGTGC+TGG | + | chr5.3:55206574-55206593 | MS.gene009935:CDS | 45.0% | |
| ACAATAAAGGGGCGAAACCA+AGG | - | chr5.3:55205720-55205739 | None:intergenic | 45.0% | |
| ACCAATGTTGGACAACACTG+AGG | - | chr5.3:55206728-55206747 | None:intergenic | 45.0% | |
| AGAAGGGATGTCGGAGAAAA+AGG | - | chr5.3:55205150-55205169 | None:intergenic | 45.0% | |
| ATATGCTTCTCGGAAGGCAA+GGG | + | chr5.3:55208964-55208983 | MS.gene009935:CDS | 45.0% | |
| ATGTCGTCGTCGTTAACAAG+TGG | - | chr5.3:55206285-55206304 | None:intergenic | 45.0% | |
| CAAGAACACTTGTATGCGAG+AGG | + | chr5.3:55204955-55204974 | MS.gene009935:CDS | 45.0% | |
| CACACGAAAGAGAATCCTCT+TGG | - | chr5.3:55206018-55206037 | None:intergenic | 45.0% | |
| CACATGCTTCACCTGTAGAA+GGG | - | chr5.3:55205166-55205185 | None:intergenic | 45.0% | |
| CATCCTCTTCAACACACAAG+AGG | + | chr5.3:55205066-55205085 | MS.gene009935:CDS | 45.0% | |
| CTAGACACACTCTTGCTTTC+TGG | - | chr5.3:55205248-55205267 | None:intergenic | 45.0% | |
| CTCTTGTGTGTTGAAGAGGA+TGG | - | chr5.3:55205068-55205087 | None:intergenic | 45.0% | |
| CTGGTTCAAAATACGGGGTT+TGG | - | chr5.3:55205345-55205364 | None:intergenic | 45.0% | |
| GAAGGGATGTCGGAGAAAAA+GGG | - | chr5.3:55205149-55205168 | None:intergenic | 45.0% | |
| GATTCTCTTTCGTGTGTGAC+GGG | + | chr5.3:55206022-55206041 | MS.gene009935:intron | 45.0% | |
| GGATTCTCTTTCGTGTGTGA+CGG | + | chr5.3:55206021-55206040 | MS.gene009935:intron | 45.0% | |
| GGGCCATATTGAAGAAAGCT+CGG | - | chr5.3:55205129-55205148 | None:intergenic | 45.0% | |
| GTGCACAGCTCTATAGGTAA+TGG | - | chr5.3:55206970-55206989 | None:intergenic | 45.0% | |
| GTGTGTTGAAGAGGATGGAT+TGG | - | chr5.3:55205063-55205082 | None:intergenic | 45.0% | |
| GTTACTATGTCCCAGCAGAA+AGG | + | chr5.3:55206396-55206415 | MS.gene009935:intron | 45.0% | |
| TCAACACACCTCACATATGC+AGG | - | chr5.3:55204993-55205012 | None:intergenic | 45.0% | |
| TCACATGCTTCACCTGTAGA+AGG | - | chr5.3:55205167-55205186 | None:intergenic | 45.0% | |
| TCAGAAAACGTGTGAAAGGC+CGG | + | chr5.3:55208993-55209012 | MS.gene009935:CDS | 45.0% | |
| TCCTCAGTGTTGTCCAACAT+TGG | + | chr5.3:55206724-55206743 | MS.gene009935:intron | 45.0% | |
| TGAATAGAATTCTCGGGGCA+AGG | - | chr5.3:55207575-55207594 | None:intergenic | 45.0% | |
| TGCTCACTATCACCAGAGAT+CGG | - | chr5.3:55207080-55207099 | None:intergenic | 45.0% | |
| TGGCTACTCTCCTAATCACA+TGG | - | chr5.3:55205854-55205873 | None:intergenic | 45.0% | |
| TTCACCTGTAGAAGGGATGT+CGG | - | chr5.3:55205159-55205178 | None:intergenic | 45.0% | |
| TTGCCTCTTGTGTGTTGAAG+AGG | - | chr5.3:55205072-55205091 | None:intergenic | 45.0% | |
| TTGCGGCTTACATGCATTGA+CGG | + | chr5.3:55206259-55206278 | MS.gene009935:intron | 45.0% | |
| ! | AACTGTGATTGGTCAGCTCA+TGG | + | chr5.3:55205035-55205054 | MS.gene009935:CDS | 45.0% |
| ! | ATTCTTTTGGCGGTTTGCCT+TGG | + | chr5.3:55205700-55205719 | MS.gene009935:intron | 45.0% |
| ! | CTCCTAATCACATGGACTGA+AGG | - | chr5.3:55205846-55205865 | None:intergenic | 45.0% |
| ! | TCTTGTTATCTCCCGATCTC+TGG | + | chr5.3:55207065-55207084 | MS.gene009935:intron | 45.0% |
| ! | TGCAGCTTGATGACAGTAGA+TGG | + | chr5.3:55206204-55206223 | MS.gene009935:intron | 45.0% |
| ! | TGTGTCTAGTTCAGCTCAAG+TGG | + | chr5.3:55205259-55205278 | MS.gene009935:CDS | 45.0% |
| !! | CAAACCCCGTATTTTGAACC+AGG | + | chr5.3:55205343-55205362 | MS.gene009935:CDS | 45.0% |
| !! | CAGCTTCTGGTTTGACTCAA+AGG | - | chr5.3:55209052-55209071 | None:intergenic | 45.0% |
| !! | GTGTTATGGTAATGGCTGAG+GGG | - | chr5.3:55208082-55208101 | None:intergenic | 45.0% |
| !! | GTTTTTAGGGGTCATCAGCA+AGG | + | chr5.3:55207345-55207364 | MS.gene009935:intron | 45.0% |
| ACCTATAGAGCTGTGCACCT+GGG | + | chr5.3:55206972-55206991 | MS.gene009935:intron | 50.0% | |
| AGAACAGTGACAACAGTGCC+AGG | + | chr5.3:55205216-55205235 | MS.gene009935:CDS | 50.0% | |
| ATAGAATTCTCGGGGCAAGG+AGG | - | chr5.3:55207572-55207591 | None:intergenic | 50.0% | |
| CAGCATTGCTGCATTCTGGT+TGG | - | chr5.3:55207385-55207404 | None:intergenic | 50.0% | |
| GAACAGTGACAACAGTGCCA+GGG | + | chr5.3:55205217-55205236 | MS.gene009935:CDS | 50.0% | |
| GACACACTCTTGCTTTCTGG+AGG | - | chr5.3:55205245-55205264 | None:intergenic | 50.0% | |
| GATATGCTTCTCGGAAGGCA+AGG | + | chr5.3:55208963-55208982 | MS.gene009935:CDS | 50.0% | |
| GATGCAGCATTGCTGCATTC+TGG | - | chr5.3:55207389-55207408 | None:intergenic | 50.0% | |
| GCTCACTATCACCAGAGATC+GGG | - | chr5.3:55207079-55207098 | None:intergenic | 50.0% | |
| GCTGGTGACTATCAAGAGTG+TGG | + | chr5.3:55207506-55207525 | MS.gene009935:CDS | 50.0% | |
| GGCTATAGCACTTAGCGTAG+TGG | + | chr5.3:55206894-55206913 | MS.gene009935:intron | 50.0% | |
| GTCAATGCATGTAAGCCGCA+AGG | - | chr5.3:55206260-55206279 | None:intergenic | 50.0% | |
| TACCTATAGAGCTGTGCACC+TGG | + | chr5.3:55206971-55206990 | MS.gene009935:intron | 50.0% | |
| TTCTCCGACATCCCTTCTAC+AGG | + | chr5.3:55205152-55205171 | MS.gene009935:CDS | 50.0% | |
| TTGCTTCTCTGGCTGTCCTT+CGG | + | chr5.3:55205100-55205119 | MS.gene009935:CDS | 50.0% | |
| ! | ATAAGGAAGCAGCATCGGAG+CGG | - | chr5.3:55204881-55204900 | None:intergenic | 50.0% |
| ! | TTTCCCCAGCTTTGACGAAC+CGG | - | chr5.3:55209015-55209034 | None:intergenic | 50.0% |
| ACGGGGTTTGGCACTTGACT+CGG | - | chr5.3:55205333-55205352 | None:intergenic | 55.0% | |
| AGTGCAGGAGCCTTTCTGCT+GGG | - | chr5.3:55206409-55206428 | None:intergenic | 55.0% | |
| CGGGCGCCTGGTTCAAAATA+CGG | - | chr5.3:55205352-55205371 | None:intergenic | 55.0% | |
| GAAGAAAGCTCGGAAGCCGA+AGG | - | chr5.3:55205119-55205138 | None:intergenic | 55.0% | |
| GGCAGTACACCAAAGACCTC+TGG | - | chr5.3:55204860-55204879 | None:intergenic | 55.0% | |
| GGCGCCTGGTTCAAAATACG+GGG | - | chr5.3:55205350-55205369 | None:intergenic | 55.0% | |
| GGGCGCCTGGTTCAAAATAC+GGG | - | chr5.3:55205351-55205370 | None:intergenic | 55.0% | |
| TAGTGCAGGAGCCTTTCTGC+TGG | - | chr5.3:55206410-55206429 | None:intergenic | 55.0% | |
| TTGCGGAGACCAGAGGTCTT+TGG | + | chr5.3:55204848-55204867 | MS.gene009935:CDS | 55.0% | |
| ! | CTTGCTTTCTGGAGGAACCC+TGG | - | chr5.3:55205237-55205256 | None:intergenic | 55.0% |
| ! | GCGATTTTTGCGGAGACCAG+AGG | + | chr5.3:55204841-55204860 | MS.gene009935:CDS | 55.0% |
| !! | AAAGGCCGGTTCGTCAAAGC+TGG | + | chr5.3:55209007-55209026 | MS.gene009935:CDS | 55.0% |
| !! | AAGGCCGGTTCGTCAAAGCT+GGG | + | chr5.3:55209008-55209027 | MS.gene009935:CDS | 55.0% |
| !! | CGTATTTTGAACCAGGCGCC+CGG | + | chr5.3:55205350-55205369 | MS.gene009935:CDS | 55.0% |
| CGGGGTTTGGCACTTGACTC+GGG | - | chr5.3:55205332-55205351 | None:intergenic | 60.0% | |
| GCCCAGGTGCACAGCTCTAT+AGG | - | chr5.3:55206976-55206995 | None:intergenic | 60.0% | |
| !! | AGGCCGGTTCGTCAAAGCTG+GGG | + | chr5.3:55209009-55209028 | MS.gene009935:CDS | 60.0% |
| !! | TCAAGGCGCTGTTGCTGCTG+AGG | + | chr5.3:55206609-55206628 | MS.gene009935:CDS | 60.0% |
| CATTGGAAGATCCGGGCGCC+TGG | - | chr5.3:55205364-55205383 | None:intergenic | 65.0% | |
| TCGGGGCAAGGAGGACACCA+GGG | - | chr5.3:55207563-55207582 | None:intergenic | 65.0% | |
| TTCTCACAGGGGAGCCTCCC+TGG | + | chr5.3:55207543-55207562 | MS.gene009935:CDS | 65.0% | |
| CTCGGGGCAAGGAGGACACC+AGG | - | chr5.3:55207564-55207583 | None:intergenic | 70.0% | |
| GGGCAAGGAGGACACCAGGG+AGG | - | chr5.3:55207560-55207579 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 55204828 | 55209075 | 55204828 | ID=MS.gene009935 |
| chr5.3 | mRNA | 55204828 | 55209075 | 55204828 | ID=MS.gene009935.t1;Parent=MS.gene009935 |
| chr5.3 | exon | 55204828 | 55205397 | 55204828 | ID=MS.gene009935.t1.exon1;Parent=MS.gene009935.t1 |
| chr5.3 | CDS | 55204828 | 55205397 | 55204828 | ID=cds.MS.gene009935.t1;Parent=MS.gene009935.t1 |
| chr5.3 | exon | 55206397 | 55206630 | 55206397 | ID=MS.gene009935.t1.exon2;Parent=MS.gene009935.t1 |
| chr5.3 | CDS | 55206397 | 55206630 | 55206397 | ID=cds.MS.gene009935.t1;Parent=MS.gene009935.t1 |
| chr5.3 | exon | 55207353 | 55207651 | 55207353 | ID=MS.gene009935.t1.exon3;Parent=MS.gene009935.t1 |
| chr5.3 | CDS | 55207353 | 55207651 | 55207353 | ID=cds.MS.gene009935.t1;Parent=MS.gene009935.t1 |
| chr5.3 | exon | 55208946 | 55209075 | 55208946 | ID=MS.gene009935.t1.exon4;Parent=MS.gene009935.t1 |
| chr5.3 | CDS | 55208946 | 55209075 | 55208946 | ID=cds.MS.gene009935.t1;Parent=MS.gene009935.t1 |
| Gene Sequence |
| Protein sequence |
