Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44846.t1 | XP_003615555.1 | 97.8 | 409 | 9 | 0 | 1 | 409 | 1 | 409 | 1.00E-193 | 686 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44846.t1 | Q9SSE5 | 55.4 | 424 | 121 | 12 | 1 | 409 | 1 | 371 | 4.3e-79 | 296.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44846.t1 | G7KE22 | 97.8 | 409 | 9 | 0 | 1 | 409 | 1 | 409 | 7.6e-194 | 686.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44846.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44846 | MS.gene044331 | PPI |
| MS.gene88720 | MS.gene44846 | PPI |
| MS.gene70471 | MS.gene44846 | PPI |
| MS.gene44846 | MS.gene009935 | PPI |
| MS.gene43742 | MS.gene44846 | PPI |
| MS.gene44846 | MS.gene25698 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44846.t1 | MTR_5g069480 | 97.800 | 409 | 9 | 0 | 1 | 409 | 1 | 409 | 0.0 | 825 |
| MS.gene44846.t1 | MTR_5g069480 | 97.015 | 268 | 8 | 0 | 1 | 268 | 1 | 268 | 0.0 | 538 |
| MS.gene44846.t1 | MTR_3g082630 | 68.193 | 415 | 121 | 7 | 1 | 409 | 1 | 410 | 0.0 | 533 |
| MS.gene44846.t1 | MTR_2g088900 | 34.298 | 449 | 222 | 15 | 1 | 404 | 97 | 517 | 4.98e-69 | 227 |
| MS.gene44846.t1 | MTR_1g109350 | 49.138 | 116 | 55 | 2 | 1 | 115 | 1 | 113 | 5.45e-30 | 119 |
| MS.gene44846.t1 | MTR_7g108150 | 43.750 | 128 | 54 | 2 | 5 | 132 | 20 | 129 | 4.23e-29 | 117 |
| MS.gene44846.t1 | MTR_7g108150 | 54.902 | 51 | 23 | 0 | 344 | 394 | 319 | 369 | 3.04e-11 | 65.1 |
| MS.gene44846.t1 | MTR_7g083540 | 41.509 | 106 | 56 | 1 | 5 | 104 | 5 | 110 | 2.82e-21 | 95.1 |
| MS.gene44846.t1 | MTR_7g083540 | 67.347 | 49 | 16 | 0 | 349 | 397 | 337 | 385 | 1.77e-14 | 75.1 |
| MS.gene44846.t1 | MTR_1g013450 | 44.048 | 84 | 47 | 0 | 4 | 87 | 5 | 88 | 9.63e-20 | 89.7 |
| MS.gene44846.t1 | MTR_1g013450 | 41.463 | 82 | 39 | 1 | 313 | 394 | 224 | 296 | 7.80e-12 | 66.2 |
| MS.gene44846.t1 | MTR_3g105710 | 43.333 | 90 | 51 | 0 | 4 | 93 | 5 | 94 | 5.67e-19 | 87.0 |
| MS.gene44846.t1 | MTR_3g105710 | 54.902 | 51 | 23 | 0 | 350 | 400 | 229 | 279 | 2.12e-11 | 64.7 |
| MS.gene44846.t1 | MTR_4g128930 | 43.333 | 90 | 51 | 0 | 4 | 93 | 21 | 110 | 1.45e-18 | 87.0 |
| MS.gene44846.t1 | MTR_4g128930 | 61.702 | 47 | 18 | 0 | 352 | 398 | 297 | 343 | 2.71e-11 | 65.1 |
| MS.gene44846.t1 | MTR_7g018170 | 42.857 | 91 | 52 | 0 | 5 | 95 | 26 | 116 | 2.74e-17 | 83.6 |
| MS.gene44846.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 6.91e-14 | 71.2 |
| MS.gene44846.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 7.01e-14 | 71.2 |
| MS.gene44846.t1 | MTR_3g117320 | 32.418 | 182 | 96 | 7 | 1 | 169 | 1 | 168 | 1.28e-13 | 70.1 |
| MS.gene44846.t1 | MTR_4g071200 | 36.082 | 97 | 52 | 1 | 1 | 87 | 1 | 97 | 1.93e-13 | 69.7 |
| MS.gene44846.t1 | MTR_1g023260 | 32.990 | 97 | 55 | 1 | 1 | 87 | 1 | 97 | 3.38e-13 | 68.2 |
| MS.gene44846.t1 | MTR_1g023260 | 32.990 | 97 | 55 | 1 | 1 | 87 | 1 | 97 | 4.82e-13 | 69.3 |
| MS.gene44846.t1 | MTR_3g113070 | 31.633 | 98 | 56 | 1 | 1 | 87 | 1 | 98 | 4.15e-12 | 65.9 |
| MS.gene44846.t1 | MTR_2g099010 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 1.04e-11 | 65.1 |
| MS.gene44846.t1 | MTR_2g099010 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 1.10e-11 | 64.7 |
| MS.gene44846.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 2.07e-11 | 63.2 |
| MS.gene44846.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 2.44e-11 | 62.8 |
| MS.gene44846.t1 | MTR_2g073370 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 2.65e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44846.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 4.56e-139 | 402 |
| MS.gene44846.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 4.56e-139 | 402 |
| MS.gene44846.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 4.56e-139 | 402 |
| MS.gene44846.t1 | AT3G07650 | 53.066 | 424 | 131 | 12 | 1 | 409 | 1 | 371 | 4.56e-139 | 402 |
| MS.gene44846.t1 | AT5G48250 | 52.706 | 425 | 132 | 13 | 1 | 409 | 1 | 372 | 7.85e-137 | 396 |
| MS.gene44846.t1 | AT4G15250 | 54.717 | 106 | 46 | 1 | 1 | 106 | 1 | 104 | 3.47e-35 | 132 |
| MS.gene44846.t1 | AT4G15250 | 54.737 | 95 | 42 | 1 | 309 | 403 | 233 | 326 | 1.98e-20 | 92.0 |
| MS.gene44846.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 2.43e-33 | 129 |
| MS.gene44846.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 352 | 395 | 355 | 398 | 3.23e-13 | 71.2 |
| MS.gene44846.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 2.65e-33 | 129 |
| MS.gene44846.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 352 | 395 | 356 | 399 | 3.25e-13 | 71.2 |
| MS.gene44846.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 1 | 114 | 9.06e-33 | 127 |
| MS.gene44846.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 252 | 361 | 7.47e-25 | 105 |
| MS.gene44846.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 9.16e-33 | 127 |
| MS.gene44846.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 256 | 365 | 7.65e-25 | 105 |
| MS.gene44846.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 9.16e-33 | 127 |
| MS.gene44846.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 256 | 365 | 7.65e-25 | 105 |
| MS.gene44846.t1 | AT1G28050 | 41.935 | 124 | 70 | 1 | 5 | 128 | 9 | 130 | 1.89e-31 | 124 |
| MS.gene44846.t1 | AT1G28050 | 30.168 | 179 | 110 | 4 | 224 | 397 | 261 | 429 | 3.88e-13 | 71.2 |
| MS.gene44846.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 1.56e-28 | 115 |
| MS.gene44846.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 1.56e-28 | 115 |
| MS.gene44846.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 39 | 144 | 2.21e-28 | 115 |
| MS.gene44846.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 1.73e-27 | 109 |
| MS.gene44846.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 4.35e-27 | 110 |
| MS.gene44846.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 5.61e-27 | 110 |
| MS.gene44846.t1 | AT2G47890 | 51.923 | 52 | 25 | 0 | 346 | 397 | 280 | 331 | 6.96e-11 | 63.5 |
| MS.gene44846.t1 | AT5G57660 | 27.295 | 403 | 198 | 10 | 5 | 402 | 22 | 334 | 1.76e-26 | 109 |
| MS.gene44846.t1 | AT5G24930 | 45.556 | 90 | 49 | 0 | 4 | 93 | 5 | 94 | 1.21e-20 | 93.2 |
| MS.gene44846.t1 | AT5G24930 | 60.784 | 51 | 20 | 0 | 348 | 398 | 290 | 340 | 1.69e-12 | 68.9 |
| MS.gene44846.t1 | AT2G24790 | 43.333 | 90 | 51 | 0 | 4 | 93 | 7 | 96 | 3.30e-19 | 87.8 |
| MS.gene44846.t1 | AT2G24790 | 50.847 | 59 | 29 | 0 | 344 | 402 | 220 | 278 | 8.59e-12 | 65.9 |
| MS.gene44846.t1 | AT2G24790 | 43.333 | 90 | 51 | 0 | 4 | 93 | 7 | 96 | 3.38e-19 | 86.3 |
| MS.gene44846.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 1.08e-17 | 84.3 |
| MS.gene44846.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 1.65e-17 | 82.4 |
| MS.gene44846.t1 | AT5G15850 | 45.349 | 86 | 47 | 0 | 5 | 90 | 12 | 97 | 5.03e-17 | 82.4 |
| MS.gene44846.t1 | AT5G15850 | 51.613 | 62 | 27 | 2 | 333 | 394 | 269 | 327 | 4.66e-11 | 64.3 |
| MS.gene44846.t1 | AT3G02380 | 38.835 | 103 | 57 | 1 | 5 | 101 | 16 | 118 | 1.12e-15 | 78.2 |
| MS.gene44846.t1 | AT3G02380 | 66.667 | 42 | 14 | 0 | 353 | 394 | 278 | 319 | 2.15e-11 | 65.5 |
| MS.gene44846.t1 | AT1G06040 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 1.50e-13 | 68.9 |
| MS.gene44846.t1 | AT1G06040 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 2.18e-13 | 70.1 |
| MS.gene44846.t1 | AT2G31380 | 34.375 | 96 | 54 | 1 | 1 | 87 | 1 | 96 | 2.41e-13 | 69.7 |
| MS.gene44846.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 4.49e-12 | 67.0 |
| MS.gene44846.t1 | AT1G75540 | 33.333 | 99 | 54 | 1 | 1 | 87 | 1 | 99 | 4.88e-12 | 67.0 |
| MS.gene44846.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 4.95e-12 | 67.0 |
| MS.gene44846.t1 | AT4G38960 | 26.286 | 175 | 107 | 4 | 1 | 166 | 1 | 162 | 2.05e-11 | 63.2 |
| MS.gene44846.t1 | AT4G38960 | 26.286 | 175 | 107 | 4 | 1 | 166 | 1 | 162 | 2.05e-11 | 63.2 |
| MS.gene44846.t1 | AT2G21320 | 36.842 | 95 | 50 | 2 | 1 | 87 | 1 | 93 | 7.39e-11 | 61.2 |
Find 84 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGACACACTCTTGCTTTC+TGG | 0.079702 | 5.2:-58690398 | None:intergenic |
| AGAAGGGATGTCTGAGAAAA+AGG | 0.263603 | 5.2:-58690300 | None:intergenic |
| CTTCCGAGCTTTCTTCAATA+TGG | 0.271446 | 5.2:+58690276 | MS.gene44846:CDS |
| GATGCAGCATTGCTGCATTC+TGG | 0.314142 | 5.2:-58692542 | None:intergenic |
| AGTGTAAACTCAGCCGCTTC+TGG | 0.325299 | 5.2:-58694071 | None:intergenic |
| CAATCAATCAATTGCTTCTC+TGG | 0.329875 | 5.2:+58690242 | MS.gene44846:CDS |
| TTCTCACAGGGGAGCCTCCC+TGG | 0.331546 | 5.2:+58692699 | MS.gene44846:CDS |
| CAATGCTGTCATGCGTTATA+AGG | 0.336608 | 5.2:+58692766 | MS.gene44846:CDS |
| CTGGTTCAAAATACGGGGTT+TGG | 0.355047 | 5.2:-58690495 | None:intergenic |
| TACCTTAGGCATAAGTTCAT+TGG | 0.357652 | 5.2:-58690531 | None:intergenic |
| CTTTCCGTAAAATAAATAAC+TGG | 0.358970 | 5.2:-58692596 | None:intergenic |
| CACTTTGTCAGAACTGTGAT+TGG | 0.369730 | 5.2:+58690177 | MS.gene44846:CDS |
| TTGCGGAGACCAGAGGTCTT+TGG | 0.371869 | 5.2:+58690001 | MS.gene44846:CDS |
| TCACATGCTTCACCCGTAGA+AGG | 0.388659 | 5.2:-58690317 | None:intergenic |
| CCGCTTCTGGTTTGACTCAA+AGG | 0.398420 | 5.2:-58694058 | None:intergenic |
| TTTCCCCAGCTTTGACGAAC+CGG | 0.416476 | 5.2:-58694021 | None:intergenic |
| CGGGCGCCTGGTTCAAAATA+CGG | 0.425108 | 5.2:-58690502 | None:intergenic |
| AAAGGCCGGTTCGTCAAAGC+TGG | 0.426807 | 5.2:+58694016 | MS.gene44846:CDS |
| TTGCTTCTCTGGCTGTCCTT+CGG | 0.430721 | 5.2:+58690253 | MS.gene44846:CDS |
| CATAAGTTCATTGGAAGATC+CGG | 0.431154 | 5.2:-58690522 | None:intergenic |
| TTTCTCAGACATCCCTTCTA+CGG | 0.434188 | 5.2:+58690304 | MS.gene44846:CDS |
| CGCTTCTGGTTTGACTCAAA+GGG | 0.439003 | 5.2:-58694057 | None:intergenic |
| CCAGAAAGCAAGAGTGTGTC+TGG | 0.441871 | 5.2:+58690398 | MS.gene44846:CDS |
| GGGCGCCTGGTTCAAAATAC+GGG | 0.445144 | 5.2:-58690501 | None:intergenic |
| ACGGGGTTTGGCACTTGACT+CGG | 0.451656 | 5.2:-58690483 | None:intergenic |
| AGAAAAGTGACAACAGTGCC+AGG | 0.456927 | 5.2:+58690369 | MS.gene44846:CDS |
| AGCAGATTGAATAGAATTCT+CGG | 0.457491 | 5.2:-58692735 | None:intergenic |
| GCAGATTGAATAGAATTCTC+GGG | 0.465896 | 5.2:-58692734 | None:intergenic |
| TTCTCAGACATCCCTTCTAC+GGG | 0.474377 | 5.2:+58690305 | MS.gene44846:CDS |
| CTCGGGGCAAGGAGGACACC+AGG | 0.476613 | 5.2:-58692717 | None:intergenic |
| CATTGGAAGATCCGGGCGCC+TGG | 0.483294 | 5.2:-58690514 | None:intergenic |
| AGAAAGTAAGATATGCTTCT+CGG | 0.490575 | 5.2:+58693963 | MS.gene44846:CDS |
| CGGGGTTTGGCACTTGACTC+GGG | 0.498437 | 5.2:-58690482 | None:intergenic |
| TAGTGCAGGAGCCTTTCTGC+TGG | 0.501364 | 5.2:-58691560 | None:intergenic |
| CTTGCTTTCTGGAGGAACCC+TGG | 0.509409 | 5.2:-58690387 | None:intergenic |
| TCGATCACACGACAAACATA+AGG | 0.512174 | 5.2:-58690048 | None:intergenic |
| TTGCCTCTTGTGTGTTGAAG+AGG | 0.512520 | 5.2:-58690222 | None:intergenic |
| TGATTTCAACATAGATGAGA+TGG | 0.515486 | 5.2:+58691606 | MS.gene44846:CDS |
| ACTTCTTCAATGCTTCTCAC+AGG | 0.517555 | 5.2:+58692686 | MS.gene44846:CDS |
| TCAGAAAACGTGTGAAAGGC+CGG | 0.518186 | 5.2:+58694002 | MS.gene44846:CDS |
| CTCTTGTGTGTTGAAGAGGA+TGG | 0.523560 | 5.2:-58690218 | None:intergenic |
| TGTTAACGCCAGAAAATGAA+AGG | 0.527986 | 5.2:-58692628 | None:intergenic |
| TTCCAATGAACTTATGCCTA+AGG | 0.528385 | 5.2:+58690529 | MS.gene44846:CDS |
| ATAAGTTCATTGGAAGATCC+GGG | 0.534550 | 5.2:-58690521 | None:intergenic |
| GGCAGTACACCAAAGACCTC+TGG | 0.535687 | 5.2:-58690010 | None:intergenic |
| CTTCTTCAATGCTTCTCACA+GGG | 0.540534 | 5.2:+58692687 | MS.gene44846:CDS |
| GATATGCTTCTCGGAAGGCA+AGG | 0.543762 | 5.2:+58693972 | MS.gene44846:CDS |
| TGAATAGAATTCTCGGGGCA+AGG | 0.546742 | 5.2:-58692728 | None:intergenic |
| AACTGTGATTGGTCAGCTCA+TGG | 0.551188 | 5.2:+58690188 | MS.gene44846:CDS |
| CACATGCTTCACCCGTAGAA+GGG | 0.554759 | 5.2:-58690316 | None:intergenic |
| CAGCATTGCTGCATTCTGGT+TGG | 0.554970 | 5.2:-58692538 | None:intergenic |
| TGTGTCTGGTTCAGCTCAAG+TGG | 0.560306 | 5.2:+58690412 | MS.gene44846:CDS |
| AAAGACATGTCTGCTAGTGC+TGG | 0.564402 | 5.2:+58691727 | MS.gene44846:CDS |
| TCAACACACCTCACATATGC+AGG | 0.564586 | 5.2:-58690143 | None:intergenic |
| TTATCATCTTCACATAGTGC+AGG | 0.566113 | 5.2:-58691574 | None:intergenic |
| TCAAGGCGCTGTTGCTGCTG+AGG | 0.568931 | 5.2:+58691762 | MS.gene44846:CDS |
| GATGTCAGAAAACGTGTGAA+AGG | 0.569991 | 5.2:+58693998 | MS.gene44846:CDS |
| AGTGCAGGAGCCTTTCTGCT+GGG | 0.574032 | 5.2:-58691559 | None:intergenic |
| ATATGCTTCTCGGAAGGCAA+GGG | 0.575562 | 5.2:+58693973 | MS.gene44846:CDS |
| GTTACTATGTCCCAGCAGAA+AGG | 0.575589 | 5.2:+58691549 | MS.gene44846:intron |
| GGGCCATATTGAAGAAAGCT+CGG | 0.577030 | 5.2:-58690279 | None:intergenic |
| AAGGCCGGTTCGTCAAAGCT+GGG | 0.589643 | 5.2:+58694017 | MS.gene44846:CDS |
| GACACACTCTTGCTTTCTGG+AGG | 0.592085 | 5.2:-58690395 | None:intergenic |
| GTGTGTTGAAGAGGATGGAT+TGG | 0.598104 | 5.2:-58690213 | None:intergenic |
| TGTGAAGATGATAAGTTGCT+TGG | 0.611126 | 5.2:+58691583 | MS.gene44846:CDS |
| CCTTTGAGTCAAACCAGAAG+CGG | 0.612485 | 5.2:+58694058 | MS.gene44846:CDS |
| AGTAAGATATGCTTCTCGGA+AGG | 0.619208 | 5.2:+58693967 | MS.gene44846:CDS |
| GAAGAAAGCTCGGAAGCCGA+AGG | 0.625937 | 5.2:-58690269 | None:intergenic |
| CATCCTCTTCAACACACAAG+AGG | 0.627085 | 5.2:+58690219 | MS.gene44846:CDS |
| GTTAACAAAGATACTAGTGC+TGG | 0.627470 | 5.2:+58692644 | MS.gene44846:CDS |
| TCGGGGCAAGGAGGACACCA+GGG | 0.628096 | 5.2:-58692716 | None:intergenic |
| CAGATTGAATAGAATTCTCG+GGG | 0.628312 | 5.2:-58692733 | None:intergenic |
| GGCGCCTGGTTCAAAATACG+GGG | 0.642690 | 5.2:-58690500 | None:intergenic |
| GCTGGTGATTCAAATTGTCA+AGG | 0.642760 | 5.2:+58691745 | MS.gene44846:CDS |
| CAAGAACACTTGTATGCGAG+AGG | 0.643376 | 5.2:+58690108 | MS.gene44846:CDS |
| TTCTTCAATGCTTCTCACAG+GGG | 0.656918 | 5.2:+58692688 | MS.gene44846:CDS |
| AGGCCGGTTCGTCAAAGCTG+GGG | 0.660571 | 5.2:+58694018 | MS.gene44846:CDS |
| GGGCAAGGAGGACACCAGGG+AGG | 0.662427 | 5.2:-58692713 | None:intergenic |
| GAAAAGTGACAACAGTGCCA+GGG | 0.664482 | 5.2:+58690370 | MS.gene44846:CDS |
| GAAGCATGTGAACATAAACT+CGG | 0.675189 | 5.2:+58690329 | MS.gene44846:CDS |
| ATTTACAACCTGCATATGTG+AGG | 0.728365 | 5.2:+58690135 | MS.gene44846:CDS |
| ATAGAATTCTCGGGGCAAGG+AGG | 0.730840 | 5.2:-58692725 | None:intergenic |
| GCTGGTGACTATCAAGAGTG+TGG | 0.743394 | 5.2:+58692662 | MS.gene44846:CDS |
| ATAAGGAAGCAGCATCAGAG+CGG | 0.751405 | 5.2:-58690031 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGTCTTTATTAAAAAA+CGG | - | chr5.2:58693039-58693058 | None:intergenic | 10.0% |
| !! | AAATAAAATAATACTACTTG+TGG | + | chr5.2:58693397-58693416 | MS.gene44846:intron | 15.0% |
| !! | TTTATATGTTAGTTGTTTAA+TGG | + | chr5.2:58690793-58690812 | MS.gene44846:intron | 15.0% |
| !!! | ACATACTTTTTTAATCAAAT+TGG | - | chr5.2:58691027-58691046 | None:intergenic | 15.0% |
| !! | AAACCTTCAAATGAATATAA+AGG | - | chr5.2:58692294-58692313 | None:intergenic | 20.0% |
| !! | AAATGAATATAAAGGACTTA+AGG | - | chr5.2:58692286-58692305 | None:intergenic | 20.0% |
| !! | CATTCATATCAATTACATAA+TGG | - | chr5.2:58691089-58691108 | None:intergenic | 20.0% |
| !! | CCAAAATTATAGTTAACAAA+GGG | - | chr5.2:58691804-58691823 | None:intergenic | 20.0% |
| !! | TGAATTAGTTACTGTATTTA+TGG | + | chr5.2:58691118-58691137 | MS.gene44846:intron | 20.0% |
| !! | TTAAAGTAGTTGCAAATATA+TGG | + | chr5.2:58693710-58693729 | MS.gene44846:intron | 20.0% |
| !! | TTATCTATAACTTAAGATAG+AGG | - | chr5.2:58690688-58690707 | None:intergenic | 20.0% |
| !!! | AAAGGTATTAAATATTGTAC+TGG | - | chr5.2:58693670-58693689 | None:intergenic | 20.0% |
| !!! | GAAAGAATAAGAGATTTTTA+AGG | - | chr5.2:58693179-58693198 | None:intergenic | 20.0% |
| !!! | TAATAAAGACATTTAAAGCT+AGG | + | chr5.2:58693044-58693063 | MS.gene44846:intron | 20.0% |
| !!! | TATCTAAACTTCTGTTTTTA+GGG | + | chr5.2:58692488-58692507 | MS.gene44846:intron | 20.0% |
| !!! | TATTTATAGTTTGCTTTTGT+TGG | + | chr5.2:58693202-58693221 | MS.gene44846:intron | 20.0% |
| !!! | TGAACCAGTTATTTATTTTA+CGG | + | chr5.2:58692592-58692611 | MS.gene44846:CDS | 20.0% |
| !!! | TGCAACTACTTTAAAAATAA+GGG | - | chr5.2:58693704-58693723 | None:intergenic | 20.0% |
| !!! | TGCTATTTTGCATTTAAAAA+TGG | + | chr5.2:58693777-58693796 | MS.gene44846:intron | 20.0% |
| !!! | TTGCAACTACTTTAAAAATA+AGG | - | chr5.2:58693705-58693724 | None:intergenic | 20.0% |
| ! | AAGCTATTAATTAGATGTGA+TGG | + | chr5.2:58690713-58690732 | MS.gene44846:intron | 25.0% |
| ! | AGTCCTTTATATTCATTTGA+AGG | + | chr5.2:58692288-58692307 | MS.gene44846:intron | 25.0% |
| ! | CTTTCCGTAAAATAAATAAC+TGG | - | chr5.2:58692599-58692618 | None:intergenic | 25.0% |
| ! | GAACAATTATACATGTACAT+AGG | - | chr5.2:58691302-58691321 | None:intergenic | 25.0% |
| ! | GATACTATTTACATATCCAA+TGG | + | chr5.2:58692824-58692843 | MS.gene44846:intron | 25.0% |
| ! | GCCAAAATTATAGTTAACAA+AGG | - | chr5.2:58691805-58691824 | None:intergenic | 25.0% |
| ! | GTACATGTATAATTGTTCTT+GGG | + | chr5.2:58691304-58691323 | MS.gene44846:intron | 25.0% |
| ! | TAAAATTATATCAACGCCAT+TGG | - | chr5.2:58692843-58692862 | None:intergenic | 25.0% |
| ! | TAATTGATATGAATGTCGTT+AGG | + | chr5.2:58691094-58691113 | MS.gene44846:intron | 25.0% |
| ! | TATTTAATACCTTTCTCCAA+TGG | + | chr5.2:58693676-58693695 | MS.gene44846:intron | 25.0% |
| ! | TCTCTATTGATCTTATTCTT+AGG | + | chr5.2:58693142-58693161 | MS.gene44846:intron | 25.0% |
| ! | TGTACATGTATAATTGTTCT+TGG | + | chr5.2:58691303-58691322 | MS.gene44846:intron | 25.0% |
| ! | TTACTTATAATCTCAAAGCT+TGG | + | chr5.2:58693888-58693907 | MS.gene44846:intron | 25.0% |
| !! | CCCTTTGTTAACTATAATTT+TGG | + | chr5.2:58691801-58691820 | MS.gene44846:intron | 25.0% |
| !! | TAGGAATGTGTTATTATTCA+TGG | - | chr5.2:58692995-58693014 | None:intergenic | 25.0% |
| !! | TATTAAGTGTTGTCAAATAG+TGG | + | chr5.2:58692026-58692045 | MS.gene44846:intron | 25.0% |
| !! | TTCTAGTCAAATGATTCTTT+TGG | + | chr5.2:58690840-58690859 | MS.gene44846:intron | 25.0% |
| !! | TTTTGAACTTGAGAACTATA+CGG | + | chr5.2:58691630-58691649 | MS.gene44846:CDS | 25.0% |
| !!! | AAGAGATTTTTAAGGTAGTT+TGG | - | chr5.2:58693171-58693190 | None:intergenic | 25.0% |
| !!! | ATCTAAACTTCTGTTTTTAG+GGG | + | chr5.2:58692489-58692508 | MS.gene44846:intron | 25.0% |
| !!! | CAGTTATTTATTTTACGGAA+AGG | + | chr5.2:58692597-58692616 | MS.gene44846:CDS | 25.0% |
| !!! | GTATCTAAACTTCTGTTTTT+AGG | + | chr5.2:58692487-58692506 | MS.gene44846:intron | 25.0% |
| !!! | TCTGAAGAGTTTTTTGAAAA+TGG | + | chr5.2:58691679-58691698 | MS.gene44846:CDS | 25.0% |
| !!! | TTTAAAAATAAGGGTACCAT+TGG | - | chr5.2:58693695-58693714 | None:intergenic | 25.0% |
| AAACTTGAACTAATTGCTAC+TGG | + | chr5.2:58691923-58691942 | MS.gene44846:intron | 30.0% | |
| AAATCATGAAGCTATACCTT+AGG | - | chr5.2:58690548-58690567 | None:intergenic | 30.0% | |
| AATAATACTACTTGTGGACA+TGG | + | chr5.2:58693403-58693422 | MS.gene44846:intron | 30.0% | |
| AGAGGGATAGAATATTGTAT+TGG | + | chr5.2:58693542-58693561 | MS.gene44846:intron | 30.0% | |
| AGCAGATTGAATAGAATTCT+CGG | - | chr5.2:58692738-58692757 | None:intergenic | 30.0% | |
| ATACAGACACGAAACAATAA+AGG | - | chr5.2:58690886-58690905 | None:intergenic | 30.0% | |
| CATCTGGAAAACCATTAAAA+TGG | - | chr5.2:58693071-58693090 | None:intergenic | 30.0% | |
| CGTGAGAGATTAAATAAGAA+AGG | - | chr5.2:58691518-58691537 | None:intergenic | 30.0% | |
| CTGAAAACTGTGGAATAAAA+AGG | - | chr5.2:58693316-58693335 | None:intergenic | 30.0% | |
| CTTTCTTATCAAACCTGAAA+TGG | - | chr5.2:58693949-58693968 | None:intergenic | 30.0% | |
| GCGGTAGTAATAAATAGAAT+AGG | + | chr5.2:58693353-58693372 | MS.gene44846:intron | 30.0% | |
| GTAATAGTTATTCTTCTCAG+TGG | - | chr5.2:58693580-58693599 | None:intergenic | 30.0% | |
| TACAATATTCTATCCCTCTT+TGG | - | chr5.2:58693541-58693560 | None:intergenic | 30.0% | |
| TACAGACACGAAACAATAAA+GGG | - | chr5.2:58690885-58690904 | None:intergenic | 30.0% | |
| TAGGGAAATGAAATGTTAAG+TGG | + | chr5.2:58691244-58691263 | MS.gene44846:intron | 30.0% | |
| TGATTTCAACATAGATGAGA+TGG | + | chr5.2:58691606-58691625 | MS.gene44846:CDS | 30.0% | |
| TGTATAATTGTTCTTGGGTT+TGG | + | chr5.2:58691309-58691328 | MS.gene44846:intron | 30.0% | |
| TTCAGTTCACTGAAATGATT+AGG | + | chr5.2:58693331-58693350 | MS.gene44846:intron | 30.0% | |
| TTCTCTGAATGAATTGTTTG+TGG | + | chr5.2:58690636-58690655 | MS.gene44846:intron | 30.0% | |
| TTTAGTGAAATGAGTTACAC+AGG | + | chr5.2:58691487-58691506 | MS.gene44846:intron | 30.0% | |
| TTTCAAAAAACTCTTCAGAG+TGG | - | chr5.2:58691678-58691697 | None:intergenic | 30.0% | |
| ! | AGAACATTTAGTTTCCTTTG+GGG | + | chr5.2:58692416-58692435 | MS.gene44846:intron | 30.0% |
| ! | AGAGAACATTTAGTTTCCTT+TGG | + | chr5.2:58692414-58692433 | MS.gene44846:intron | 30.0% |
| ! | CAATCAAACCTTTCATTTTC+TGG | + | chr5.2:58692620-58692639 | MS.gene44846:CDS | 30.0% |
| ! | CGTTGATATAATTTTACCTG+TGG | + | chr5.2:58692847-58692866 | MS.gene44846:intron | 30.0% |
| ! | GAGAACATTTAGTTTCCTTT+GGG | + | chr5.2:58692415-58692434 | MS.gene44846:intron | 30.0% |
| ! | GTTTGTGGAAATTTGTTTGA+CGG | + | chr5.2:58690651-58690670 | MS.gene44846:intron | 30.0% |
| ! | TAAAGCTAGGTCCATTTTAA+TGG | + | chr5.2:58693057-58693076 | MS.gene44846:intron | 30.0% |
| ! | TAGTCAAATGATTCTTTTGG+CGG | + | chr5.2:58690843-58690862 | MS.gene44846:intron | 30.0% |
| ! | TCACAAAGTGTTATGGTAAA+TGG | - | chr5.2:58693245-58693264 | None:intergenic | 30.0% |
| ! | TGGAATAAAAAGGTATAGCA+TGG | - | chr5.2:58693306-58693325 | None:intergenic | 30.0% |
| !! | ATCTGCTCATGTTTTTGTTA+TGG | + | chr5.2:58692896-58692915 | MS.gene44846:intron | 30.0% |
| !!! | GAAGAGTTTTTTGAAAATGG+TGG | + | chr5.2:58691682-58691701 | MS.gene44846:CDS | 30.0% |
| !!! | TTTGTTTTTGCTTGGAAGAT+CGG | - | chr5.2:58690438-58690457 | None:intergenic | 30.0% |
| AAACGCATAATATGAGACAG+AGG | - | chr5.2:58693605-58693624 | None:intergenic | 35.0% | |
| AACGCATAATATGAGACAGA+GGG | - | chr5.2:58693604-58693623 | None:intergenic | 35.0% | |
| ACAGACACGAAACAATAAAG+GGG | - | chr5.2:58690884-58690903 | None:intergenic | 35.0% | |
| AGAAAACCTTAGACAACATC+TGG | - | chr5.2:58693087-58693106 | None:intergenic | 35.0% | |
| AGTTCACTGAAATGATTAGG+CGG | + | chr5.2:58693334-58693353 | MS.gene44846:intron | 35.0% | |
| ATAAGTTCATTGGAAGATCC+GGG | - | chr5.2:58690524-58690543 | None:intergenic | 35.0% | |
| ATACATGTACATAGGTGACA+AGG | - | chr5.2:58691294-58691313 | None:intergenic | 35.0% | |
| ATTTACAACCTGCATATGTG+AGG | + | chr5.2:58690135-58690154 | MS.gene44846:CDS | 35.0% | |
| CAATAGAGACATTAGAGAGA+AGG | - | chr5.2:58693131-58693150 | None:intergenic | 35.0% | |
| CAATCAATCAATTGCTTCTC+TGG | + | chr5.2:58690242-58690261 | MS.gene44846:CDS | 35.0% | |
| CAGATTGAATAGAATTCTCG+GGG | - | chr5.2:58692736-58692755 | None:intergenic | 35.0% | |
| CATAAGTTCATTGGAAGATC+CGG | - | chr5.2:58690525-58690544 | None:intergenic | 35.0% | |
| CATATTGCAGTTACAAGACT+AGG | - | chr5.2:58690580-58690599 | None:intergenic | 35.0% | |
| CATCTCAAATTGCAGTCTTT+GGG | + | chr5.2:58691212-58691231 | MS.gene44846:intron | 35.0% | |
| CTATAGACTGATCTTCTAGT+CGG | + | chr5.2:58692175-58692194 | MS.gene44846:intron | 35.0% | |
| CTCAGTTATGTGACATGTAA+CGG | - | chr5.2:58691850-58691869 | None:intergenic | 35.0% | |
| CTCATATTATGTGTCCCATT+TGG | - | chr5.2:58693838-58693857 | None:intergenic | 35.0% | |
| CTTCCAAGCAAAAACAAATC+TGG | + | chr5.2:58690440-58690459 | MS.gene44846:CDS | 35.0% | |
| GAAGCATGTGAACATAAACT+CGG | + | chr5.2:58690329-58690348 | MS.gene44846:CDS | 35.0% | |
| GCAGATTGAATAGAATTCTC+GGG | - | chr5.2:58692737-58692756 | None:intergenic | 35.0% | |
| GTTAACAAAGATACTAGTGC+TGG | + | chr5.2:58692644-58692663 | MS.gene44846:CDS | 35.0% | |
| GTTCAAGCTACTGATAAATC+AGG | - | chr5.2:58690933-58690952 | None:intergenic | 35.0% | |
| TACCTTAGGCATAAGTTCAT+TGG | - | chr5.2:58690534-58690553 | None:intergenic | 35.0% | |
| TATAAAACTAAGACCCCCAA+AGG | - | chr5.2:58692433-58692452 | None:intergenic | 35.0% | |
| TATCACTATTGCACCAATGT+TGG | - | chr5.2:58691893-58691912 | None:intergenic | 35.0% | |
| TCAAAGCTTGGTTGCTATAT+GGG | + | chr5.2:58693900-58693919 | MS.gene44846:intron | 35.0% | |
| TCATCTCAAATTGCAGTCTT+TGG | + | chr5.2:58691211-58691230 | MS.gene44846:intron | 35.0% | |
| TGTGAAGATGATAAGTTGCT+TGG | + | chr5.2:58691583-58691602 | MS.gene44846:CDS | 35.0% | |
| TGTTAACGCCAGAAAATGAA+AGG | - | chr5.2:58692631-58692650 | None:intergenic | 35.0% | |
| TTATCATCTTCACATAGTGC+AGG | - | chr5.2:58691577-58691596 | None:intergenic | 35.0% | |
| TTCATAGTGTTGTCCAATAC+CGG | + | chr5.2:58691946-58691965 | MS.gene44846:intron | 35.0% | |
| TTCCAATGAACTTATGCCTA+AGG | + | chr5.2:58690529-58690548 | MS.gene44846:CDS | 35.0% | |
| TTGTTCTGCTATACGCTATT+TGG | + | chr5.2:58692003-58692022 | MS.gene44846:intron | 35.0% | |
| TTTCAGTGAACTGAAAACTG+TGG | - | chr5.2:58693326-58693345 | None:intergenic | 35.0% | |
| ! | AGTTCGTTCACAAAGTGTTA+TGG | - | chr5.2:58693252-58693271 | None:intergenic | 35.0% |
| ! | GAACATTTAGTTTCCTTTGG+GGG | + | chr5.2:58692417-58692436 | MS.gene44846:intron | 35.0% |
| ! | GGTTCTTTATGCGATTTTTG+CGG | + | chr5.2:58689984-58690003 | MS.gene44846:CDS | 35.0% |
| ! | GTTATGATGAATGCCATTTC+AGG | + | chr5.2:58693933-58693952 | MS.gene44846:intron | 35.0% |
| ! | TTTGATAGAGTTGATCGAGT+AGG | - | chr5.2:58693014-58693033 | None:intergenic | 35.0% |
| !! | AGTCTTTGGGTTTTGATGAT+AGG | + | chr5.2:58691225-58691244 | MS.gene44846:intron | 35.0% |
| !! | GTCTTTGGGTTTTGATGATA+GGG | + | chr5.2:58691226-58691245 | MS.gene44846:intron | 35.0% |
| !!! | TTTGGGGGTCTTAGTTTTAT+AGG | + | chr5.2:58692432-58692451 | MS.gene44846:intron | 35.0% |
| ACAATAAAGGGGCAAAACCA+AGG | - | chr5.2:58690873-58690892 | None:intergenic | 40.0% | |
| ACTTCTTCAATGCTTCTCAC+AGG | + | chr5.2:58692686-58692705 | MS.gene44846:CDS | 40.0% | |
| AGAAGGGATGTCTGAGAAAA+AGG | - | chr5.2:58690303-58690322 | None:intergenic | 40.0% | |
| AGTAGCTTGAACTTCAAAGC+AGG | + | chr5.2:58690941-58690960 | MS.gene44846:intron | 40.0% | |
| AGTGTTATGGTAAATGGCTG+AGG | - | chr5.2:58693239-58693258 | None:intergenic | 40.0% | |
| ATAATGCGATCAGCCAAAGA+GGG | + | chr5.2:58693525-58693544 | MS.gene44846:intron | 40.0% | |
| ATGTCGTCGTTGTTAACAAG+TGG | - | chr5.2:58691438-58691457 | None:intergenic | 40.0% | |
| ATTTCGCTACACTATTGCAC+CGG | - | chr5.2:58691968-58691987 | None:intergenic | 40.0% | |
| CAATGCTGTCATGCGTTATA+AGG | + | chr5.2:58692766-58692785 | MS.gene44846:CDS | 40.0% | |
| CACTTTGTCAGAACTGTGAT+TGG | + | chr5.2:58690177-58690196 | MS.gene44846:CDS | 40.0% | |
| CTCAAAGCTTGGTTGCTATA+TGG | + | chr5.2:58693899-58693918 | MS.gene44846:intron | 40.0% | |
| CTTCATTTCAACGTTCCAAG+AGG | + | chr5.2:58691153-58691172 | MS.gene44846:intron | 40.0% | |
| CTTCCGAGCTTTCTTCAATA+TGG | + | chr5.2:58690276-58690295 | MS.gene44846:CDS | 40.0% | |
| CTTCTTCAATGCTTCTCACA+GGG | + | chr5.2:58692687-58692706 | MS.gene44846:CDS | 40.0% | |
| GAAGGGATGTCTGAGAAAAA+GGG | - | chr5.2:58690302-58690321 | None:intergenic | 40.0% | |
| GAAGTGTGCACATTCCAAAT+GGG | + | chr5.2:58693821-58693840 | MS.gene44846:intron | 40.0% | |
| GATGTCAGAAAACGTGTGAA+AGG | + | chr5.2:58693998-58694017 | MS.gene44846:CDS | 40.0% | |
| GCAATATGTTTGTCGCACAA+CGG | + | chr5.2:58690592-58690611 | MS.gene44846:intron | 40.0% | |
| GCTGGTGATTCAAATTGTCA+AGG | + | chr5.2:58691745-58691764 | MS.gene44846:CDS | 40.0% | |
| GTGTTATGGTAAATGGCTGA+GGG | - | chr5.2:58693238-58693257 | None:intergenic | 40.0% | |
| TACCTTCAGTCCATGTGATT+AGG | + | chr5.2:58690994-58691013 | MS.gene44846:intron | 40.0% | |
| TCGATCACACGACAAACATA+AGG | - | chr5.2:58690051-58690070 | None:intergenic | 40.0% | |
| TGCACAGCTCTATAGGTAAT+GGG | - | chr5.2:58692124-58692143 | None:intergenic | 40.0% | |
| TGTTATGGTAAATGGCTGAG+GGG | - | chr5.2:58693237-58693256 | None:intergenic | 40.0% | |
| TTCTTCAATGCTTCTCACAG+GGG | + | chr5.2:58692688-58692707 | MS.gene44846:CDS | 40.0% | |
| TTGAACTTCAAAGCAGGAAC+AGG | + | chr5.2:58690947-58690966 | MS.gene44846:intron | 40.0% | |
| TTGATTTCTCTACAATGCCC+AGG | - | chr5.2:58692147-58692166 | None:intergenic | 40.0% | |
| TTTCTCAGACATCCCTTCTA+CGG | + | chr5.2:58690304-58690323 | MS.gene44846:CDS | 40.0% | |
| ! | AGAAGTGTGCACATTCCAAA+TGG | + | chr5.2:58693820-58693839 | MS.gene44846:intron | 40.0% |
| ! | GCAAAGAAACAATAGCCTTG+CGG | + | chr5.2:58691395-58691414 | MS.gene44846:intron | 40.0% |
| ! | GGTTTTCCAGATGTTGTCTA+AGG | + | chr5.2:58693078-58693097 | MS.gene44846:intron | 40.0% |
| !! | ATAAGGGTACCATTGGAGAA+AGG | - | chr5.2:58693688-58693707 | None:intergenic | 40.0% |
| !! | GGTGTTTTTGCTCAGAATTC+AGG | + | chr5.2:58693430-58693449 | MS.gene44846:intron | 40.0% |
| !!! | ACGCCAGATTTGTTTTTGCT+TGG | - | chr5.2:58690446-58690465 | None:intergenic | 40.0% |
| !!! | GTTACTTTTACGTCAACCAC+AGG | - | chr5.2:58692866-58692885 | None:intergenic | 40.0% |
| AAAGACATGTCTGCTAGTGC+TGG | + | chr5.2:58691727-58691746 | MS.gene44846:CDS | 45.0% | |
| ACCAATGTTGGACAACACTG+AGG | - | chr5.2:58691881-58691900 | None:intergenic | 45.0% | |
| ACTACTTGTGGACATGGTGA+TGG | + | chr5.2:58693409-58693428 | MS.gene44846:intron | 45.0% | |
| AGAAAAGTGACAACAGTGCC+AGG | + | chr5.2:58690369-58690388 | MS.gene44846:CDS | 45.0% | |
| ATAAGGAAGCAGCATCAGAG+CGG | - | chr5.2:58690034-58690053 | None:intergenic | 45.0% | |
| CAAGAACACTTGTATGCGAG+AGG | + | chr5.2:58690108-58690127 | MS.gene44846:CDS | 45.0% | |
| CACACGAAAGAGAATCCTCT+TGG | - | chr5.2:58691171-58691190 | None:intergenic | 45.0% | |
| CATAATGCGATCAGCCAAAG+AGG | + | chr5.2:58693524-58693543 | MS.gene44846:intron | 45.0% | |
| CATCCTCTTCAACACACAAG+AGG | + | chr5.2:58690219-58690238 | MS.gene44846:CDS | 45.0% | |
| CCTTTGAGTCAAACCAGAAG+CGG | + | chr5.2:58694058-58694077 | MS.gene44846:CDS | 45.0% | |
| CTCTTGTGTGTTGAAGAGGA+TGG | - | chr5.2:58690221-58690240 | None:intergenic | 45.0% | |
| CTGGTTCAAAATACGGGGTT+TGG | - | chr5.2:58690498-58690517 | None:intergenic | 45.0% | |
| GAAAAGTGACAACAGTGCCA+GGG | + | chr5.2:58690370-58690389 | MS.gene44846:CDS | 45.0% | |
| GATTCTCTTTCGTGTGTGAC+GGG | + | chr5.2:58691175-58691194 | MS.gene44846:intron | 45.0% | |
| GGATTCTCTTTCGTGTGTGA+CGG | + | chr5.2:58691174-58691193 | MS.gene44846:intron | 45.0% | |
| GGCTATAGCACTTAGCATAG+TGG | + | chr5.2:58692047-58692066 | MS.gene44846:intron | 45.0% | |
| GGGCCATATTGAAGAAAGCT+CGG | - | chr5.2:58690282-58690301 | None:intergenic | 45.0% | |
| GTGCACAGCTCTATAGGTAA+TGG | - | chr5.2:58692125-58692144 | None:intergenic | 45.0% | |
| GTGTGTTGAAGAGGATGGAT+TGG | - | chr5.2:58690216-58690235 | None:intergenic | 45.0% | |
| GTTACTATGTCCCAGCAGAA+AGG | + | chr5.2:58691549-58691568 | MS.gene44846:intron | 45.0% | |
| TCAACACACCTCACATATGC+AGG | - | chr5.2:58690146-58690165 | None:intergenic | 45.0% | |
| TCAGAAAACGTGTGAAAGGC+CGG | + | chr5.2:58694002-58694021 | MS.gene44846:CDS | 45.0% | |
| TCCTCAGTGTTGTCCAACAT+TGG | + | chr5.2:58691877-58691896 | MS.gene44846:intron | 45.0% | |
| TGAATAGAATTCTCGGGGCA+AGG | - | chr5.2:58692731-58692750 | None:intergenic | 45.0% | |
| TGCTCACTATCACCAGAGAT+CGG | - | chr5.2:58692235-58692254 | None:intergenic | 45.0% | |
| TGGCTACTCTCCTAATCACA+TGG | - | chr5.2:58691007-58691026 | None:intergenic | 45.0% | |
| TTCTCAGACATCCCTTCTAC+GGG | + | chr5.2:58690305-58690324 | MS.gene44846:CDS | 45.0% | |
| TTGCCTCTTGTGTGTTGAAG+AGG | - | chr5.2:58690225-58690244 | None:intergenic | 45.0% | |
| TTGCGGCTTACATGCATTGA+CGG | + | chr5.2:58691412-58691431 | MS.gene44846:intron | 45.0% | |
| ! | AACTGTGATTGGTCAGCTCA+TGG | + | chr5.2:58690188-58690207 | MS.gene44846:CDS | 45.0% |
| ! | ATTCTTTTGGCGGTTTGCCT+TGG | + | chr5.2:58690853-58690872 | MS.gene44846:intron | 45.0% |
| ! | CTACACTATTGCACCGGTAT+TGG | - | chr5.2:58691962-58691981 | None:intergenic | 45.0% |
| ! | CTCCTAATCACATGGACTGA+AGG | - | chr5.2:58690999-58691018 | None:intergenic | 45.0% |
| ! | TCTTGTTATCTCCCGATCTC+TGG | + | chr5.2:58692220-58692239 | MS.gene44846:intron | 45.0% |
| ! | TGCAGCTTGATGACAGTAGA+TGG | + | chr5.2:58691357-58691376 | MS.gene44846:intron | 45.0% |
| !! | CAAACCCCGTATTTTGAACC+AGG | + | chr5.2:58690496-58690515 | MS.gene44846:CDS | 45.0% |
| !! | CGCTTCTGGTTTGACTCAAA+GGG | - | chr5.2:58694060-58694079 | None:intergenic | 45.0% |
| !! | GTTTTTAGGGGTCATCAGCA+AGG | + | chr5.2:58692501-58692520 | MS.gene44846:intron | 45.0% |
| ACCTATAGAGCTGTGCACCT+GGG | + | chr5.2:58692127-58692146 | MS.gene44846:intron | 50.0% | |
| ATAGAATTCTCGGGGCAAGG+AGG | - | chr5.2:58692728-58692747 | None:intergenic | 50.0% | |
| CACATGCTTCACCCGTAGAA+GGG | - | chr5.2:58690319-58690338 | None:intergenic | 50.0% | |
| CAGCATTGCTGCATTCTGGT+TGG | - | chr5.2:58692541-58692560 | None:intergenic | 50.0% | |
| CCAGACACACTCTTGCTTTC+TGG | - | chr5.2:58690401-58690420 | None:intergenic | 50.0% | |
| GACACACTCTTGCTTTCTGG+AGG | - | chr5.2:58690398-58690417 | None:intergenic | 50.0% | |
| GATGCAGCATTGCTGCATTC+TGG | - | chr5.2:58692545-58692564 | None:intergenic | 50.0% | |
| GCTCACTATCACCAGAGATC+GGG | - | chr5.2:58692234-58692253 | None:intergenic | 50.0% | |
| GCTGGTGACTATCAAGAGTG+TGG | + | chr5.2:58692662-58692681 | MS.gene44846:CDS | 50.0% | |
| GTCAATGCATGTAAGCCGCA+AGG | - | chr5.2:58691413-58691432 | None:intergenic | 50.0% | |
| TACCTATAGAGCTGTGCACC+TGG | + | chr5.2:58692126-58692145 | MS.gene44846:intron | 50.0% | |
| TCACATGCTTCACCCGTAGA+AGG | - | chr5.2:58690320-58690339 | None:intergenic | 50.0% | |
| TTGCTTCTCTGGCTGTCCTT+CGG | + | chr5.2:58690253-58690272 | MS.gene44846:CDS | 50.0% | |
| ! | CCAGAAAGCAAGAGTGTGTC+TGG | + | chr5.2:58690398-58690417 | MS.gene44846:CDS | 50.0% |
| ! | TGTGTCTGGTTCAGCTCAAG+TGG | + | chr5.2:58690412-58690431 | MS.gene44846:CDS | 50.0% |
| ! | TTTCCCCAGCTTTGACGAAC+CGG | - | chr5.2:58694024-58694043 | None:intergenic | 50.0% |
| !! | CCGCTTCTGGTTTGACTCAA+AGG | - | chr5.2:58694061-58694080 | None:intergenic | 50.0% |
| ACGGGGTTTGGCACTTGACT+CGG | - | chr5.2:58690486-58690505 | None:intergenic | 55.0% | |
| AGTGCAGGAGCCTTTCTGCT+GGG | - | chr5.2:58691562-58691581 | None:intergenic | 55.0% | |
| CGGGCGCCTGGTTCAAAATA+CGG | - | chr5.2:58690505-58690524 | None:intergenic | 55.0% | |
| GAAGAAAGCTCGGAAGCCGA+AGG | - | chr5.2:58690272-58690291 | None:intergenic | 55.0% | |
| GGCAGTACACCAAAGACCTC+TGG | - | chr5.2:58690013-58690032 | None:intergenic | 55.0% | |
| GGCGCCTGGTTCAAAATACG+GGG | - | chr5.2:58690503-58690522 | None:intergenic | 55.0% | |
| GGGCGCCTGGTTCAAAATAC+GGG | - | chr5.2:58690504-58690523 | None:intergenic | 55.0% | |
| TAGTGCAGGAGCCTTTCTGC+TGG | - | chr5.2:58691563-58691582 | None:intergenic | 55.0% | |
| TTGCGGAGACCAGAGGTCTT+TGG | + | chr5.2:58690001-58690020 | MS.gene44846:CDS | 55.0% | |
| ! | CTTGCTTTCTGGAGGAACCC+TGG | - | chr5.2:58690390-58690409 | None:intergenic | 55.0% |
| ! | GCGATTTTTGCGGAGACCAG+AGG | + | chr5.2:58689994-58690013 | MS.gene44846:CDS | 55.0% |
| !! | AAAGGCCGGTTCGTCAAAGC+TGG | + | chr5.2:58694016-58694035 | MS.gene44846:CDS | 55.0% |
| !! | AAGGCCGGTTCGTCAAAGCT+GGG | + | chr5.2:58694017-58694036 | MS.gene44846:CDS | 55.0% |
| !! | CGTATTTTGAACCAGGCGCC+CGG | + | chr5.2:58690503-58690522 | MS.gene44846:CDS | 55.0% |
| CGGGGTTTGGCACTTGACTC+GGG | - | chr5.2:58690485-58690504 | None:intergenic | 60.0% | |
| GCCCAGGTGCACAGCTCTAT+AGG | - | chr5.2:58692131-58692150 | None:intergenic | 60.0% | |
| !! | AGGCCGGTTCGTCAAAGCTG+GGG | + | chr5.2:58694018-58694037 | MS.gene44846:CDS | 60.0% |
| !! | TCAAGGCGCTGTTGCTGCTG+AGG | + | chr5.2:58691762-58691781 | MS.gene44846:CDS | 60.0% |
| CATTGGAAGATCCGGGCGCC+TGG | - | chr5.2:58690517-58690536 | None:intergenic | 65.0% | |
| TCGGGGCAAGGAGGACACCA+GGG | - | chr5.2:58692719-58692738 | None:intergenic | 65.0% | |
| TTCTCACAGGGGAGCCTCCC+TGG | + | chr5.2:58692699-58692718 | MS.gene44846:CDS | 65.0% | |
| CTCGGGGCAAGGAGGACACC+AGG | - | chr5.2:58692720-58692739 | None:intergenic | 70.0% | |
| GGGCAAGGAGGACACCAGGG+AGG | - | chr5.2:58692716-58692735 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 58689981 | 58694084 | 58689981 | ID=MS.gene44846 |
| chr5.2 | mRNA | 58689981 | 58694084 | 58689981 | ID=MS.gene44846.t1;Parent=MS.gene44846 |
| chr5.2 | exon | 58689981 | 58690550 | 58689981 | ID=MS.gene44846.t1.exon1;Parent=MS.gene44846.t1 |
| chr5.2 | CDS | 58689981 | 58690550 | 58689981 | ID=cds.MS.gene44846.t1;Parent=MS.gene44846.t1 |
| chr5.2 | exon | 58691550 | 58691783 | 58691550 | ID=MS.gene44846.t1.exon2;Parent=MS.gene44846.t1 |
| chr5.2 | CDS | 58691550 | 58691783 | 58691550 | ID=cds.MS.gene44846.t1;Parent=MS.gene44846.t1 |
| chr5.2 | exon | 58692509 | 58692807 | 58692509 | ID=MS.gene44846.t1.exon3;Parent=MS.gene44846.t1 |
| chr5.2 | CDS | 58692509 | 58692807 | 58692509 | ID=cds.MS.gene44846.t1;Parent=MS.gene44846.t1 |
| chr5.2 | exon | 58693955 | 58694084 | 58693955 | ID=MS.gene44846.t1.exon4;Parent=MS.gene44846.t1 |
| chr5.2 | CDS | 58693955 | 58694084 | 58693955 | ID=cds.MS.gene44846.t1;Parent=MS.gene44846.t1 |
| Gene Sequence |
| Protein sequence |
