Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88720.t1 | XP_003615555.1 | 97.8 | 410 | 8 | 1 | 1 | 409 | 1 | 410 | 2.30E-193 | 684.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88720.t1 | Q9SSE5 | 55.4 | 424 | 120 | 13 | 1 | 408 | 1 | 371 | 3.6e-78 | 293.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88720.t1 | G7KE22 | 97.8 | 410 | 8 | 1 | 1 | 409 | 1 | 410 | 1.7e-193 | 684.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88720.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88720 | MS.gene009935 | PPI |
| MS.gene88720 | MS.gene25698 | PPI |
| MS.gene43742 | MS.gene88720 | PPI |
| MS.gene88720 | MS.gene43742 | PPI |
| MS.gene88720 | MS.gene70471 | PPI |
| MS.gene88720 | MS.gene44846 | PPI |
| MS.gene88720 | MS.gene044331 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88720.t1 | MTR_5g069480 | 97.805 | 410 | 8 | 1 | 1 | 409 | 1 | 410 | 0.0 | 822 |
| MS.gene88720.t1 | MTR_5g069480 | 97.388 | 268 | 7 | 0 | 1 | 268 | 1 | 268 | 0.0 | 540 |
| MS.gene88720.t1 | MTR_3g082630 | 68.434 | 415 | 119 | 8 | 1 | 408 | 1 | 410 | 0.0 | 531 |
| MS.gene88720.t1 | MTR_2g088900 | 34.375 | 448 | 222 | 15 | 1 | 403 | 97 | 517 | 3.52e-69 | 227 |
| MS.gene88720.t1 | MTR_1g109350 | 49.138 | 116 | 55 | 2 | 1 | 115 | 1 | 113 | 8.03e-30 | 118 |
| MS.gene88720.t1 | MTR_7g108150 | 49.505 | 101 | 50 | 1 | 5 | 105 | 20 | 119 | 5.67e-29 | 116 |
| MS.gene88720.t1 | MTR_7g108150 | 54.902 | 51 | 23 | 0 | 343 | 393 | 319 | 369 | 3.00e-11 | 65.1 |
| MS.gene88720.t1 | MTR_7g083540 | 41.509 | 106 | 56 | 1 | 5 | 104 | 5 | 110 | 3.54e-21 | 94.7 |
| MS.gene88720.t1 | MTR_7g083540 | 67.347 | 49 | 16 | 0 | 348 | 396 | 337 | 385 | 1.52e-14 | 75.1 |
| MS.gene88720.t1 | MTR_1g013450 | 33.133 | 166 | 100 | 3 | 4 | 162 | 5 | 166 | 8.50e-20 | 89.7 |
| MS.gene88720.t1 | MTR_1g013450 | 41.975 | 81 | 39 | 1 | 313 | 393 | 224 | 296 | 5.48e-12 | 66.6 |
| MS.gene88720.t1 | MTR_3g105710 | 43.333 | 90 | 51 | 0 | 4 | 93 | 5 | 94 | 5.85e-19 | 87.0 |
| MS.gene88720.t1 | MTR_3g105710 | 54.902 | 51 | 23 | 0 | 349 | 399 | 229 | 279 | 2.02e-11 | 64.7 |
| MS.gene88720.t1 | MTR_4g128930 | 43.333 | 90 | 51 | 0 | 4 | 93 | 21 | 110 | 1.70e-18 | 86.7 |
| MS.gene88720.t1 | MTR_4g128930 | 61.702 | 47 | 18 | 0 | 351 | 397 | 297 | 343 | 2.58e-11 | 65.1 |
| MS.gene88720.t1 | MTR_7g018170 | 42.857 | 91 | 52 | 0 | 5 | 95 | 26 | 116 | 2.98e-17 | 83.2 |
| MS.gene88720.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 8.68e-14 | 70.9 |
| MS.gene88720.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 8.81e-14 | 70.9 |
| MS.gene88720.t1 | MTR_3g117320 | 31.282 | 195 | 102 | 8 | 1 | 182 | 1 | 176 | 1.07e-13 | 70.5 |
| MS.gene88720.t1 | MTR_4g071200 | 36.082 | 97 | 52 | 1 | 1 | 87 | 1 | 97 | 1.96e-13 | 69.7 |
| MS.gene88720.t1 | MTR_1g023260 | 32.990 | 97 | 55 | 1 | 1 | 87 | 1 | 97 | 4.15e-13 | 68.2 |
| MS.gene88720.t1 | MTR_1g023260 | 32.990 | 97 | 55 | 1 | 1 | 87 | 1 | 97 | 6.91e-13 | 68.9 |
| MS.gene88720.t1 | MTR_3g113070 | 31.633 | 98 | 56 | 1 | 1 | 87 | 1 | 98 | 4.81e-12 | 65.5 |
| MS.gene88720.t1 | MTR_2g099010 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 1.28e-11 | 64.7 |
| MS.gene88720.t1 | MTR_2g099010 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 1.29e-11 | 64.7 |
| MS.gene88720.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 2.40e-11 | 62.8 |
| MS.gene88720.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 2.92e-11 | 62.8 |
| MS.gene88720.t1 | MTR_2g073370 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 3.47e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88720.t1 | AT3G07650 | 53.066 | 424 | 130 | 13 | 1 | 408 | 1 | 371 | 1.96e-137 | 398 |
| MS.gene88720.t1 | AT3G07650 | 53.066 | 424 | 130 | 13 | 1 | 408 | 1 | 371 | 1.96e-137 | 398 |
| MS.gene88720.t1 | AT3G07650 | 53.066 | 424 | 130 | 13 | 1 | 408 | 1 | 371 | 1.96e-137 | 398 |
| MS.gene88720.t1 | AT3G07650 | 53.066 | 424 | 130 | 13 | 1 | 408 | 1 | 371 | 1.96e-137 | 398 |
| MS.gene88720.t1 | AT5G48250 | 52.706 | 425 | 131 | 14 | 1 | 408 | 1 | 372 | 2.04e-135 | 393 |
| MS.gene88720.t1 | AT4G15250 | 54.717 | 106 | 46 | 1 | 1 | 106 | 1 | 104 | 3.97e-35 | 132 |
| MS.gene88720.t1 | AT4G15250 | 55.319 | 94 | 42 | 0 | 309 | 402 | 233 | 326 | 1.23e-21 | 95.5 |
| MS.gene88720.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 2.99e-33 | 129 |
| MS.gene88720.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 351 | 394 | 356 | 399 | 2.84e-13 | 71.2 |
| MS.gene88720.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 3.26e-33 | 129 |
| MS.gene88720.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 351 | 394 | 355 | 398 | 2.83e-13 | 71.2 |
| MS.gene88720.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 9.66e-33 | 127 |
| MS.gene88720.t1 | AT3G21880 | 52.174 | 115 | 50 | 3 | 292 | 406 | 256 | 365 | 9.10e-26 | 107 |
| MS.gene88720.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 9.66e-33 | 127 |
| MS.gene88720.t1 | AT3G21880 | 52.174 | 115 | 50 | 3 | 292 | 406 | 256 | 365 | 9.10e-26 | 107 |
| MS.gene88720.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 1 | 114 | 9.95e-33 | 127 |
| MS.gene88720.t1 | AT3G21880 | 52.174 | 115 | 50 | 3 | 292 | 406 | 252 | 361 | 9.77e-26 | 107 |
| MS.gene88720.t1 | AT1G28050 | 41.935 | 124 | 70 | 1 | 5 | 128 | 9 | 130 | 2.29e-31 | 124 |
| MS.gene88720.t1 | AT1G28050 | 30.337 | 178 | 110 | 4 | 224 | 396 | 261 | 429 | 2.54e-13 | 71.6 |
| MS.gene88720.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 1.79e-28 | 115 |
| MS.gene88720.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 1.79e-28 | 115 |
| MS.gene88720.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 39 | 144 | 2.60e-28 | 115 |
| MS.gene88720.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 1.71e-27 | 109 |
| MS.gene88720.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 5.04e-27 | 109 |
| MS.gene88720.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 6.36e-27 | 110 |
| MS.gene88720.t1 | AT2G47890 | 51.923 | 52 | 25 | 0 | 345 | 396 | 280 | 331 | 6.80e-11 | 63.5 |
| MS.gene88720.t1 | AT5G57660 | 27.363 | 402 | 198 | 10 | 5 | 401 | 22 | 334 | 1.50e-26 | 109 |
| MS.gene88720.t1 | AT5G24930 | 45.556 | 90 | 49 | 0 | 4 | 93 | 5 | 94 | 1.29e-20 | 92.8 |
| MS.gene88720.t1 | AT5G24930 | 60.784 | 51 | 20 | 0 | 347 | 397 | 290 | 340 | 1.55e-12 | 68.9 |
| MS.gene88720.t1 | AT2G24790 | 43.333 | 90 | 51 | 0 | 4 | 93 | 7 | 96 | 3.77e-19 | 85.9 |
| MS.gene88720.t1 | AT2G24790 | 41.346 | 104 | 59 | 1 | 4 | 105 | 7 | 110 | 4.09e-19 | 87.4 |
| MS.gene88720.t1 | AT2G24790 | 46.377 | 69 | 37 | 0 | 333 | 401 | 210 | 278 | 5.00e-12 | 66.6 |
| MS.gene88720.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 1.20e-17 | 84.3 |
| MS.gene88720.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 1.62e-17 | 82.4 |
| MS.gene88720.t1 | AT5G15850 | 45.349 | 86 | 47 | 0 | 5 | 90 | 12 | 97 | 6.13e-17 | 82.0 |
| MS.gene88720.t1 | AT5G15850 | 50.820 | 61 | 28 | 1 | 333 | 393 | 269 | 327 | 2.85e-11 | 65.1 |
| MS.gene88720.t1 | AT3G02380 | 38.835 | 103 | 57 | 1 | 5 | 101 | 16 | 118 | 1.31e-15 | 78.2 |
| MS.gene88720.t1 | AT3G02380 | 66.667 | 42 | 14 | 0 | 352 | 393 | 278 | 319 | 1.90e-11 | 65.5 |
| MS.gene88720.t1 | AT1G06040 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 1.44e-13 | 68.9 |
| MS.gene88720.t1 | AT1G06040 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 2.77e-13 | 69.7 |
| MS.gene88720.t1 | AT2G31380 | 34.375 | 96 | 54 | 1 | 1 | 87 | 1 | 96 | 2.90e-13 | 69.3 |
| MS.gene88720.t1 | AT4G38960 | 26.857 | 175 | 106 | 4 | 1 | 166 | 1 | 162 | 3.97e-12 | 65.1 |
| MS.gene88720.t1 | AT4G38960 | 26.857 | 175 | 106 | 4 | 1 | 166 | 1 | 162 | 3.97e-12 | 65.1 |
| MS.gene88720.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 5.74e-12 | 66.6 |
| MS.gene88720.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 6.20e-12 | 66.6 |
| MS.gene88720.t1 | AT1G75540 | 33.333 | 99 | 54 | 1 | 1 | 87 | 1 | 99 | 6.93e-12 | 66.6 |
| MS.gene88720.t1 | AT2G21320 | 36.842 | 95 | 50 | 2 | 1 | 87 | 1 | 93 | 8.59e-11 | 60.8 |
Find 81 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGACACACTCTTGCTTTC+TGG | 0.079702 | 5.4:-54241428 | None:intergenic |
| AGAAGGGATGTCTGAGAAAA+AGG | 0.263603 | 5.4:-54241330 | None:intergenic |
| CTTCCGAGCTTTCTTCAATA+TGG | 0.271446 | 5.4:+54241306 | MS.gene88720:CDS |
| GATGCAGCATTGCTGCATTC+TGG | 0.314142 | 5.4:-54243571 | None:intergenic |
| AGTGTAAACTCAGCAGCTTC+TGG | 0.321377 | 5.4:-54245090 | None:intergenic |
| CAATCAATCAATTGCTTCTC+TGG | 0.329875 | 5.4:+54241272 | MS.gene88720:CDS |
| TTCTCACAGGGGAGCCTCCC+TGG | 0.331546 | 5.4:+54243728 | MS.gene88720:CDS |
| CAATGCTGTCATGCGTTATA+AGG | 0.336608 | 5.4:+54243792 | MS.gene88720:CDS |
| CTGGTTCAAAATACGGGGTT+TGG | 0.355047 | 5.4:-54241525 | None:intergenic |
| TACCTTAGGCATAAGTTCAT+TGG | 0.357652 | 5.4:-54241561 | None:intergenic |
| CTTTCCGTAAAATAAATAAC+TGG | 0.358970 | 5.4:-54243625 | None:intergenic |
| CACTTTGTCAGAACTGTGAT+TGG | 0.369730 | 5.4:+54241207 | MS.gene88720:CDS |
| TTGCGGAGACCAGAGGTCTT+TGG | 0.371869 | 5.4:+54241031 | MS.gene88720:CDS |
| TCACATGCTTCACCCGTAGA+AGG | 0.388659 | 5.4:-54241347 | None:intergenic |
| GCAGATTGAATAGAATTCTC+AGG | 0.403505 | 5.4:-54243760 | None:intergenic |
| AAAGGCCGGTTCGTCAAAGC+TGG | 0.416312 | 5.4:+54245035 | MS.gene88720:CDS |
| TTTCCCCAGCTTTGACGAAC+CGG | 0.416476 | 5.4:-54245040 | None:intergenic |
| CAGCTTCTGGTTTGACTCAA+AGG | 0.419857 | 5.4:-54245077 | None:intergenic |
| CGGGCGCCTGGTTCAAAATA+CGG | 0.425108 | 5.4:-54241532 | None:intergenic |
| TTGCTTCTCTGGCTGTCCTT+CGG | 0.430721 | 5.4:+54241283 | MS.gene88720:CDS |
| CATAAGTTCATTGGAAGATC+CGG | 0.431154 | 5.4:-54241552 | None:intergenic |
| TTTCTCAGACATCCCTTCTA+CGG | 0.434188 | 5.4:+54241334 | MS.gene88720:CDS |
| CCAGAAAGCAAGAGTGTGTC+TGG | 0.441871 | 5.4:+54241428 | MS.gene88720:CDS |
| GGGCGCCTGGTTCAAAATAC+GGG | 0.445144 | 5.4:-54241531 | None:intergenic |
| ATTCTCAGGGCAAGGACACC+AGG | 0.450414 | 5.4:-54243746 | None:intergenic |
| AGAACAGTGACAACAGTGCC+AGG | 0.462494 | 5.4:+54241399 | MS.gene88720:CDS |
| TCAGAAAACGCGTGAAAGGC+CGG | 0.466338 | 5.4:+54245021 | MS.gene88720:CDS |
| AGCTTCTGGTTTGACTCAAA+GGG | 0.472965 | 5.4:-54245076 | None:intergenic |
| TTCTCAGACATCCCTTCTAC+GGG | 0.474377 | 5.4:+54241335 | MS.gene88720:CDS |
| CATTGGAAGATCCGGGCGCC+TGG | 0.483294 | 5.4:-54241544 | None:intergenic |
| AGAAAGTAAGATATGCTTCT+CGG | 0.490575 | 5.4:+54244982 | MS.gene88720:CDS |
| TAGTGCAGGAGCCTTTCTGC+TGG | 0.501364 | 5.4:-54242590 | None:intergenic |
| CTTGCTTTCTGGAGGAACCC+TGG | 0.509409 | 5.4:-54241417 | None:intergenic |
| CGGGGTTTGGCACTTGACTC+AGG | 0.510138 | 5.4:-54241512 | None:intergenic |
| TCGATCACACGACAAACATA+AGG | 0.512174 | 5.4:-54241078 | None:intergenic |
| TTGCCTCTTGTGTGTTGAAG+AGG | 0.512520 | 5.4:-54241252 | None:intergenic |
| TGATTTCAACATAGATGAGA+TGG | 0.515486 | 5.4:+54242636 | MS.gene88720:CDS |
| ACTTCTTCAATGCTTCTCAC+AGG | 0.517555 | 5.4:+54243715 | MS.gene88720:CDS |
| CTCTTGTGTGTTGAAGAGGA+TGG | 0.523560 | 5.4:-54241248 | None:intergenic |
| TGTTAACGCCAGAAAATGAA+AGG | 0.527986 | 5.4:-54243657 | None:intergenic |
| TTCCAATGAACTTATGCCTA+AGG | 0.528385 | 5.4:+54241559 | MS.gene88720:CDS |
| ATAAGTTCATTGGAAGATCC+GGG | 0.534550 | 5.4:-54241551 | None:intergenic |
| GGCAGTACACCAAAGACCTC+TGG | 0.535687 | 5.4:-54241040 | None:intergenic |
| CTTCTTCAATGCTTCTCACA+GGG | 0.540534 | 5.4:+54243716 | MS.gene88720:CDS |
| GATATGCTTCTCGGAAGGCA+AGG | 0.543762 | 5.4:+54244991 | MS.gene88720:CDS |
| GATGTCAGAAAACGCGTGAA+AGG | 0.547529 | 5.4:+54245017 | MS.gene88720:CDS |
| AACTGTGATTGGTCAGCTCA+TGG | 0.551188 | 5.4:+54241218 | MS.gene88720:CDS |
| CACATGCTTCACCCGTAGAA+GGG | 0.554759 | 5.4:-54241346 | None:intergenic |
| CAGCATTGCTGCATTCTGGT+TGG | 0.554970 | 5.4:-54243567 | None:intergenic |
| TGTGTCTGGTTCAGCTCAAG+TGG | 0.560306 | 5.4:+54241442 | MS.gene88720:CDS |
| AAAGACATGTCTGCTAGTGC+TGG | 0.564402 | 5.4:+54242757 | MS.gene88720:CDS |
| TCAACACACCTCACATATGC+AGG | 0.564586 | 5.4:-54241173 | None:intergenic |
| TTATCATCTTCACATAGTGC+AGG | 0.566113 | 5.4:-54242604 | None:intergenic |
| CAGATTGAATAGAATTCTCA+GGG | 0.567877 | 5.4:-54243759 | None:intergenic |
| TCAAGGCGCTGTTGCTGCTG+AGG | 0.568931 | 5.4:+54242792 | MS.gene88720:CDS |
| AGTGCAGGAGCCTTTCTGCT+GGG | 0.574032 | 5.4:-54242589 | None:intergenic |
| ATATGCTTCTCGGAAGGCAA+GGG | 0.575562 | 5.4:+54244992 | MS.gene88720:CDS |
| GTTACTATGTCCCAGCAGAA+AGG | 0.575589 | 5.4:+54242579 | MS.gene88720:intron |
| GGGCCATATTGAAGAAAGCT+CGG | 0.577030 | 5.4:-54241309 | None:intergenic |
| CAAACATAAGGAAGCAGCAT+CGG | 0.579320 | 5.4:-54241066 | None:intergenic |
| TGAATAGAATTCTCAGGGCA+AGG | 0.581628 | 5.4:-54243754 | None:intergenic |
| AAGGCCGGTTCGTCAAAGCT+GGG | 0.589643 | 5.4:+54245036 | MS.gene88720:CDS |
| GACACACTCTTGCTTTCTGG+AGG | 0.592085 | 5.4:-54241425 | None:intergenic |
| GTGTGTTGAAGAGGATGGAT+TGG | 0.598104 | 5.4:-54241243 | None:intergenic |
| TGTGAAGATGATAAGTTGCT+TGG | 0.611126 | 5.4:+54242613 | MS.gene88720:CDS |
| TTCTCAGGGCAAGGACACCA+GGG | 0.615035 | 5.4:-54243745 | None:intergenic |
| AGTAAGATATGCTTCTCGGA+AGG | 0.619208 | 5.4:+54244986 | MS.gene88720:CDS |
| GAAGAAAGCTCGGAAGCCGA+AGG | 0.625937 | 5.4:-54241299 | None:intergenic |
| CATCCTCTTCAACACACAAG+AGG | 0.627085 | 5.4:+54241249 | MS.gene88720:CDS |
| GTTAACAAAGATACTAGTGC+TGG | 0.627470 | 5.4:+54243673 | MS.gene88720:CDS |
| GGCGCCTGGTTCAAAATACG+GGG | 0.642690 | 5.4:-54241530 | None:intergenic |
| GCTGGTGATTCAAATTGTCA+AGG | 0.642760 | 5.4:+54242775 | MS.gene88720:CDS |
| CAAGAACACTTGTATGCGAG+AGG | 0.643376 | 5.4:+54241138 | MS.gene88720:CDS |
| TTCTTCAATGCTTCTCACAG+GGG | 0.656918 | 5.4:+54243717 | MS.gene88720:CDS |
| AGGCCGGTTCGTCAAAGCTG+GGG | 0.660571 | 5.4:+54245037 | MS.gene88720:CDS |
| GAACAGTGACAACAGTGCCA+GGG | 0.668906 | 5.4:+54241400 | MS.gene88720:CDS |
| GAAGCATGTGAACATAAACT+CGG | 0.675189 | 5.4:+54241359 | MS.gene88720:CDS |
| ATAAGGAAGCAGCATCGGAG+CGG | 0.698842 | 5.4:-54241061 | None:intergenic |
| ATTTACAACCTGCATATGTG+AGG | 0.728365 | 5.4:+54241165 | MS.gene88720:CDS |
| TCAGGGCAAGGACACCAGGG+AGG | 0.737032 | 5.4:-54243742 | None:intergenic |
| GCTGGTGACTATCAAGAGTG+TGG | 0.743394 | 5.4:+54243691 | MS.gene88720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGTCTTTATTAAAAAA+CGG | - | chr5.4:54244065-54244084 | None:intergenic | 10.0% |
| !! | AAATAAAATAATACTACTTG+TGG | + | chr5.4:54244422-54244441 | MS.gene88720:intron | 15.0% |
| !! | TTTATATGTTAGTTGTTTAA+TGG | + | chr5.4:54241823-54241842 | MS.gene88720:intron | 15.0% |
| !!! | ACATACTTTTTTAATCAAAT+TGG | - | chr5.4:54242057-54242076 | None:intergenic | 15.0% |
| !! | AAACCTTCAAATGAATATAA+AGG | - | chr5.4:54243324-54243343 | None:intergenic | 20.0% |
| !! | AAATGAATATAAAGGACTTA+AGG | - | chr5.4:54243316-54243335 | None:intergenic | 20.0% |
| !! | AATACAAAACCTATAAAACT+AGG | - | chr5.4:54243473-54243492 | None:intergenic | 20.0% |
| !! | CATTCATATCAATTACATAA+TGG | - | chr5.4:54242119-54242138 | None:intergenic | 20.0% |
| !! | TGAATTAGTTACTGTATTTA+TGG | + | chr5.4:54242148-54242167 | MS.gene88720:intron | 20.0% |
| !! | TTAAAGTAGTTGCAAATATA+TGG | + | chr5.4:54244729-54244748 | MS.gene88720:intron | 20.0% |
| !! | TTATCTATAACTTAAGATAG+AGG | - | chr5.4:54241718-54241737 | None:intergenic | 20.0% |
| !!! | AAAGGTATTAAATATTGTAC+TGG | - | chr5.4:54244689-54244708 | None:intergenic | 20.0% |
| !!! | GAAAGAATAAGAGATTTTTA+AGG | - | chr5.4:54244205-54244224 | None:intergenic | 20.0% |
| !!! | TAATAAAGACATTTAAAGCT+AGG | + | chr5.4:54244070-54244089 | MS.gene88720:intron | 20.0% |
| !!! | TATCTAAACTTCTGTTTTTA+GGG | + | chr5.4:54243517-54243536 | MS.gene88720:intron | 20.0% |
| !!! | TATTTATAGTTTGCTTTTGT+TGG | + | chr5.4:54244228-54244247 | MS.gene88720:intron | 20.0% |
| !!! | TGAACCAGTTATTTATTTTA+CGG | + | chr5.4:54243621-54243640 | MS.gene88720:CDS | 20.0% |
| !!! | TGCAACTACTTTAAAAATAA+GGG | - | chr5.4:54244723-54244742 | None:intergenic | 20.0% |
| !!! | TGCTATTTTGCATTTAAAAT+TGG | + | chr5.4:54244796-54244815 | MS.gene88720:intron | 20.0% |
| !!! | TTGCAACTACTTTAAAAATA+AGG | - | chr5.4:54244724-54244743 | None:intergenic | 20.0% |
| ! | AAGCTATTAATTAGATGTGA+TGG | + | chr5.4:54241743-54241762 | MS.gene88720:intron | 25.0% |
| ! | AATAATACTACTTGTGGAAA+TGG | + | chr5.4:54244428-54244447 | MS.gene88720:intron | 25.0% |
| ! | AGTCCTTTATATTCATTTGA+AGG | + | chr5.4:54243318-54243337 | MS.gene88720:intron | 25.0% |
| ! | CATGAGAGATTAAATAAGAA+AGG | - | chr5.4:54242548-54242567 | None:intergenic | 25.0% |
| ! | CCAAAATTATAGCTAACAAA+GGG | - | chr5.4:54242834-54242853 | None:intergenic | 25.0% |
| ! | CTTTCCGTAAAATAAATAAC+TGG | - | chr5.4:54243628-54243647 | None:intergenic | 25.0% |
| ! | GAACAATTATACATGTACAT+AGG | - | chr5.4:54242332-54242351 | None:intergenic | 25.0% |
| ! | GATACTATTTACATATCCAA+TGG | + | chr5.4:54243850-54243869 | MS.gene88720:intron | 25.0% |
| ! | GTACATGTATAATTGTTCTT+GGG | + | chr5.4:54242334-54242353 | MS.gene88720:intron | 25.0% |
| ! | TAAAATTATATCAACGCCAT+TGG | - | chr5.4:54243869-54243888 | None:intergenic | 25.0% |
| ! | TAATTGATATGAATGTCGTT+AGG | + | chr5.4:54242124-54242143 | MS.gene88720:intron | 25.0% |
| ! | TATTTAATACCTTTCTCCAA+TGG | + | chr5.4:54244695-54244714 | MS.gene88720:intron | 25.0% |
| ! | TCTCTATTGATCTTATTCTT+AGG | + | chr5.4:54244168-54244187 | MS.gene88720:intron | 25.0% |
| ! | TGTACATGTATAATTGTTCT+TGG | + | chr5.4:54242333-54242352 | MS.gene88720:intron | 25.0% |
| ! | TTACTTATAATCTCAAAGCT+TGG | + | chr5.4:54244907-54244926 | MS.gene88720:intron | 25.0% |
| !! | TAGGAATGTGTTATTATTCA+TGG | - | chr5.4:54244021-54244040 | None:intergenic | 25.0% |
| !! | TATTAAGTGTTGTCAAATAG+TGG | + | chr5.4:54243056-54243075 | MS.gene88720:intron | 25.0% |
| !! | TTCTAGTCAAATGATTCTTT+TGG | + | chr5.4:54241870-54241889 | MS.gene88720:intron | 25.0% |
| !! | TTTTGAACTTGAGAACTATA+CGG | + | chr5.4:54242660-54242679 | MS.gene88720:CDS | 25.0% |
| !!! | AAGAGATTTTTAAGGTAGTT+TGG | - | chr5.4:54244197-54244216 | None:intergenic | 25.0% |
| !!! | ATCTAAACTTCTGTTTTTAG+GGG | + | chr5.4:54243518-54243537 | MS.gene88720:intron | 25.0% |
| !!! | CAGTTATTTATTTTACGGAA+AGG | + | chr5.4:54243626-54243645 | MS.gene88720:CDS | 25.0% |
| !!! | GTATCTAAACTTCTGTTTTT+AGG | + | chr5.4:54243516-54243535 | MS.gene88720:intron | 25.0% |
| !!! | TCTGAAGAGTTTTTTGAAAA+TGG | + | chr5.4:54242709-54242728 | MS.gene88720:CDS | 25.0% |
| !!! | TTTAAAAATAAGGGTACCAT+TGG | - | chr5.4:54244714-54244733 | None:intergenic | 25.0% |
| AAAACATGAAGCTATACCTT+AGG | - | chr5.4:54241578-54241597 | None:intergenic | 30.0% | |
| AAACGCATATTATGAGATAG+AGG | - | chr5.4:54244624-54244643 | None:intergenic | 30.0% | |
| AAACTTGAACTAATTGCTAC+TGG | + | chr5.4:54242953-54242972 | MS.gene88720:intron | 30.0% | |
| AACGCATATTATGAGATAGA+GGG | - | chr5.4:54244623-54244642 | None:intergenic | 30.0% | |
| AGAAAGTAAGATATGCTTCT+CGG | + | chr5.4:54244982-54245001 | MS.gene88720:CDS | 30.0% | |
| AGAGGGATAGAATATTGTAT+TGG | + | chr5.4:54244561-54244580 | MS.gene88720:intron | 30.0% | |
| ATACAGACACGAAACAATAA+AGG | - | chr5.4:54241916-54241935 | None:intergenic | 30.0% | |
| CAGATTGAATAGAATTCTCA+GGG | - | chr5.4:54243762-54243781 | None:intergenic | 30.0% | |
| CATCTGGAAAACCATTAAAA+TGG | - | chr5.4:54244097-54244116 | None:intergenic | 30.0% | |
| CTCATATTATGTGTCTCATT+TGG | - | chr5.4:54244857-54244876 | None:intergenic | 30.0% | |
| CTGAAAACTGTGGAATAAAA+AGG | - | chr5.4:54244341-54244360 | None:intergenic | 30.0% | |
| CTTTCTTATCAAACCTGAAA+TGG | - | chr5.4:54244968-54244987 | None:intergenic | 30.0% | |
| GCCAAAATTATAGCTAACAA+AGG | - | chr5.4:54242835-54242854 | None:intergenic | 30.0% | |
| GCGGTAGTAATAAATAGAAT+AGG | + | chr5.4:54244378-54244397 | MS.gene88720:intron | 30.0% | |
| GTAATAGTTATTCTTCTCAG+TGG | - | chr5.4:54244599-54244618 | None:intergenic | 30.0% | |
| GTTCAAGCTATTGATAAATC+AGG | - | chr5.4:54241963-54241982 | None:intergenic | 30.0% | |
| TACAATATTCTATCCCTCTT+TGG | - | chr5.4:54244560-54244579 | None:intergenic | 30.0% | |
| TACAGACACGAAACAATAAA+GGG | - | chr5.4:54241915-54241934 | None:intergenic | 30.0% | |
| TAGGGAAATGAAATGTTAAG+TGG | + | chr5.4:54242274-54242293 | MS.gene88720:intron | 30.0% | |
| TGATTTCAACATAGATGAGA+TGG | + | chr5.4:54242636-54242655 | MS.gene88720:CDS | 30.0% | |
| TGGTGTAAAACAATGAGAAT+AGG | - | chr5.4:54244001-54244020 | None:intergenic | 30.0% | |
| TGTATAATTGTTCTTGGGTT+TGG | + | chr5.4:54242339-54242358 | MS.gene88720:intron | 30.0% | |
| TTCAGTTCACTGAAATGATT+AGG | + | chr5.4:54244356-54244375 | MS.gene88720:intron | 30.0% | |
| TTCTCTGAATGAATTGTTTG+TGG | + | chr5.4:54241666-54241685 | MS.gene88720:intron | 30.0% | |
| TTTAGTGAAATGAGTTACAC+AGG | + | chr5.4:54242517-54242536 | MS.gene88720:intron | 30.0% | |
| TTTCAAAAAACTCTTCAGAG+TGG | - | chr5.4:54242708-54242727 | None:intergenic | 30.0% | |
| ! | AGAACATTTAGTTTCCTTTG+GGG | + | chr5.4:54243446-54243465 | MS.gene88720:intron | 30.0% |
| ! | AGAGAACATTTAGTTTCCTT+TGG | + | chr5.4:54243444-54243463 | MS.gene88720:intron | 30.0% |
| ! | CAATCAAACCTTTCATTTTC+TGG | + | chr5.4:54243649-54243668 | MS.gene88720:CDS | 30.0% |
| ! | CCCTTTGTTAGCTATAATTT+TGG | + | chr5.4:54242831-54242850 | MS.gene88720:intron | 30.0% |
| ! | CGTTGATATAATTTTACCTG+TGG | + | chr5.4:54243873-54243892 | MS.gene88720:intron | 30.0% |
| ! | GAGAACATTTAGTTTCCTTT+GGG | + | chr5.4:54243445-54243464 | MS.gene88720:intron | 30.0% |
| ! | GTTTGTGGAAATTTGTTTGA+CGG | + | chr5.4:54241681-54241700 | MS.gene88720:intron | 30.0% |
| ! | TAAAGCTAGGTCCATTTTAA+TGG | + | chr5.4:54244083-54244102 | MS.gene88720:intron | 30.0% |
| ! | TAGTCAAATGATTCTTTTGG+CGG | + | chr5.4:54241873-54241892 | MS.gene88720:intron | 30.0% |
| ! | TGGAATAAAAAGGTATAGCA+TGG | - | chr5.4:54244331-54244350 | None:intergenic | 30.0% |
| ! | TTCACAAAGTGTTATGGTAA+TGG | - | chr5.4:54244271-54244290 | None:intergenic | 30.0% |
| !! | ATCTGCTCATGTTTTTGTTA+TGG | + | chr5.4:54243922-54243941 | MS.gene88720:intron | 30.0% |
| !!! | GAAGAGTTTTTTGAAAATGG+TGG | + | chr5.4:54242712-54242731 | MS.gene88720:CDS | 30.0% |
| !!! | TTTGTTTTTGCTTGGAAGAT+CGG | - | chr5.4:54241468-54241487 | None:intergenic | 30.0% |
| AATAGCTTGAACTTCAAAGC+AGG | + | chr5.4:54241971-54241990 | MS.gene88720:intron | 35.0% | |
| ACAGACACGAAACAATAAAG+GGG | - | chr5.4:54241914-54241933 | None:intergenic | 35.0% | |
| AGAAAACCTTAGACAACATC+TGG | - | chr5.4:54244113-54244132 | None:intergenic | 35.0% | |
| AGTTCACTGAAATGATTAGG+CGG | + | chr5.4:54244359-54244378 | MS.gene88720:intron | 35.0% | |
| ATAAGTTCATTGGAAGATCC+GGG | - | chr5.4:54241554-54241573 | None:intergenic | 35.0% | |
| ATACATGTACATAGGTGACA+AGG | - | chr5.4:54242324-54242343 | None:intergenic | 35.0% | |
| ATTTACAACCTGCATATGTG+AGG | + | chr5.4:54241165-54241184 | MS.gene88720:CDS | 35.0% | |
| CAATAGAGACATTAGAGAGA+AGG | - | chr5.4:54244157-54244176 | None:intergenic | 35.0% | |
| CAATCAATCAATTGCTTCTC+TGG | + | chr5.4:54241272-54241291 | MS.gene88720:CDS | 35.0% | |
| CATAAGTTCATTGGAAGATC+CGG | - | chr5.4:54241555-54241574 | None:intergenic | 35.0% | |
| CATATTGCAGTTACAAGACT+AGG | - | chr5.4:54241610-54241629 | None:intergenic | 35.0% | |
| CATCTCAAATTGTGGTCTTT+GGG | + | chr5.4:54242242-54242261 | MS.gene88720:intron | 35.0% | |
| CTATAGACTGATCTTCTAGT+CGG | + | chr5.4:54243205-54243224 | MS.gene88720:intron | 35.0% | |
| CTCAGTTATGTGACATGTAA+CGG | - | chr5.4:54242880-54242899 | None:intergenic | 35.0% | |
| CTTCCAAGCAAAAACAAATC+TGG | + | chr5.4:54241470-54241489 | MS.gene88720:CDS | 35.0% | |
| GAAGCATGTGAACATAAACT+CGG | + | chr5.4:54241359-54241378 | MS.gene88720:CDS | 35.0% | |
| GCAGATTGAATAGAATTCTC+AGG | - | chr5.4:54243763-54243782 | None:intergenic | 35.0% | |
| GTTAACAAAGATACTAGTGC+TGG | + | chr5.4:54243673-54243692 | MS.gene88720:CDS | 35.0% | |
| TACCTTAGGCATAAGTTCAT+TGG | - | chr5.4:54241564-54241583 | None:intergenic | 35.0% | |
| TATCACTATTGCACCAATGT+TGG | - | chr5.4:54242923-54242942 | None:intergenic | 35.0% | |
| TCAAAGCTTGGTTGCTATAT+GGG | + | chr5.4:54244919-54244938 | MS.gene88720:intron | 35.0% | |
| TCATCTCAAATTGTGGTCTT+TGG | + | chr5.4:54242241-54242260 | MS.gene88720:intron | 35.0% | |
| TGACACATCATCTCAAATTG+TGG | + | chr5.4:54242234-54242253 | MS.gene88720:intron | 35.0% | |
| TGTGAAGATGATAAGTTGCT+TGG | + | chr5.4:54242613-54242632 | MS.gene88720:CDS | 35.0% | |
| TGTTAACGCCAGAAAATGAA+AGG | - | chr5.4:54243660-54243679 | None:intergenic | 35.0% | |
| TTATCATCTTCACATAGTGC+AGG | - | chr5.4:54242607-54242626 | None:intergenic | 35.0% | |
| TTCATAGTGTTGTCCAATAC+CGG | + | chr5.4:54242976-54242995 | MS.gene88720:intron | 35.0% | |
| TTCCAATGAACTTATGCCTA+AGG | + | chr5.4:54241559-54241578 | MS.gene88720:CDS | 35.0% | |
| TTGTTCTGCTATACGCTATT+TGG | + | chr5.4:54243033-54243052 | MS.gene88720:intron | 35.0% | |
| TTTCAGTGAACTGAAAACTG+TGG | - | chr5.4:54244351-54244370 | None:intergenic | 35.0% | |
| ! | AGTTCGTTCACAAAGTGTTA+TGG | - | chr5.4:54244277-54244296 | None:intergenic | 35.0% |
| ! | GGTTCTTTATGCGATTTTTG+CGG | + | chr5.4:54241014-54241033 | MS.gene88720:CDS | 35.0% |
| ! | TTTGATAGAGTTGATCGAGT+AGG | - | chr5.4:54244040-54244059 | None:intergenic | 35.0% |
| !! | GTCTTTGGGTTTTGATGATA+GGG | + | chr5.4:54242256-54242275 | MS.gene88720:intron | 35.0% |
| ACAATAAAGGGGCAAAACCA+AGG | - | chr5.4:54241903-54241922 | None:intergenic | 40.0% | |
| ACTACTTGTGGAAATGGTGA+TGG | + | chr5.4:54244434-54244453 | MS.gene88720:intron | 40.0% | |
| ACTTCTTCAATGCTTCTCAC+AGG | + | chr5.4:54243715-54243734 | MS.gene88720:CDS | 40.0% | |
| AGAAGGGATGTCTGAGAAAA+AGG | - | chr5.4:54241333-54241352 | None:intergenic | 40.0% | |
| AGTAAGATATGCTTCTCGGA+AGG | + | chr5.4:54244986-54245005 | MS.gene88720:CDS | 40.0% | |
| ATAATGCGATCAGCCAAAGA+GGG | + | chr5.4:54244544-54244563 | MS.gene88720:intron | 40.0% | |
| ATGTCGTCGTTGTTAACAAG+TGG | - | chr5.4:54242468-54242487 | None:intergenic | 40.0% | |
| ATTTCGCTACACTATTGCAC+CGG | - | chr5.4:54242998-54243017 | None:intergenic | 40.0% | |
| CAAACATAAGGAAGCAGCAT+CGG | - | chr5.4:54241069-54241088 | None:intergenic | 40.0% | |
| CAATGCTGTCATGCGTTATA+AGG | + | chr5.4:54243792-54243811 | MS.gene88720:CDS | 40.0% | |
| CACTTTGTCAGAACTGTGAT+TGG | + | chr5.4:54241207-54241226 | MS.gene88720:CDS | 40.0% | |
| CTATAAAACTAGGACCCCAA+AGG | - | chr5.4:54243463-54243482 | None:intergenic | 40.0% | |
| CTCAAAGCTTGGTTGCTATA+TGG | + | chr5.4:54244918-54244937 | MS.gene88720:intron | 40.0% | |
| CTTCATTTCAACGTTCCAAG+AGG | + | chr5.4:54242183-54242202 | MS.gene88720:intron | 40.0% | |
| CTTCCGAGCTTTCTTCAATA+TGG | + | chr5.4:54241306-54241325 | MS.gene88720:CDS | 40.0% | |
| CTTCTTCAATGCTTCTCACA+GGG | + | chr5.4:54243716-54243735 | MS.gene88720:CDS | 40.0% | |
| GAAGGGATGTCTGAGAAAAA+GGG | - | chr5.4:54241332-54241351 | None:intergenic | 40.0% | |
| GCAATATGTTTGTCGCACAA+CGG | + | chr5.4:54241622-54241641 | MS.gene88720:intron | 40.0% | |
| GCTGGTGATTCAAATTGTCA+AGG | + | chr5.4:54242775-54242794 | MS.gene88720:CDS | 40.0% | |
| TCGATCACACGACAAACATA+AGG | - | chr5.4:54241081-54241100 | None:intergenic | 40.0% | |
| TGAATAGAATTCTCAGGGCA+AGG | - | chr5.4:54243757-54243776 | None:intergenic | 40.0% | |
| TGCACAGCTCTATAGGTAAT+GGG | - | chr5.4:54243154-54243173 | None:intergenic | 40.0% | |
| TTCTTCAATGCTTCTCACAG+GGG | + | chr5.4:54243717-54243736 | MS.gene88720:CDS | 40.0% | |
| TTGAACTTCAAAGCAGGAAC+AGG | + | chr5.4:54241977-54241996 | MS.gene88720:intron | 40.0% | |
| TTGATTTCTCTACAATGCCC+AGG | - | chr5.4:54243177-54243196 | None:intergenic | 40.0% | |
| TTTCTCAGACATCCCTTCTA+CGG | + | chr5.4:54241334-54241353 | MS.gene88720:CDS | 40.0% | |
| ! | GCAAAGAAACAATAGCCTTG+CGG | + | chr5.4:54242425-54242444 | MS.gene88720:intron | 40.0% |
| ! | GGTTTTCCAGATGTTGTCTA+AGG | + | chr5.4:54244104-54244123 | MS.gene88720:intron | 40.0% |
| ! | GTTACGATGAATGCCATTTC+AGG | + | chr5.4:54244952-54244971 | MS.gene88720:intron | 40.0% |
| !! | AAGTGTTATGGTAATGGCTG+AGG | - | chr5.4:54244265-54244284 | None:intergenic | 40.0% |
| !! | AGCTTCTGGTTTGACTCAAA+GGG | - | chr5.4:54245079-54245098 | None:intergenic | 40.0% |
| !! | AGTGTTATGGTAATGGCTGA+GGG | - | chr5.4:54244264-54244283 | None:intergenic | 40.0% |
| !! | ATAAGGGTACCATTGGAGAA+AGG | - | chr5.4:54244707-54244726 | None:intergenic | 40.0% |
| !! | GGTCTTTGGGTTTTGATGAT+AGG | + | chr5.4:54242255-54242274 | MS.gene88720:intron | 40.0% |
| !!! | ACGCCAGATTTGTTTTTGCT+TGG | - | chr5.4:54241476-54241495 | None:intergenic | 40.0% |
| !!! | CTTTGGGGTCCTAGTTTTAT+AGG | + | chr5.4:54243461-54243480 | MS.gene88720:intron | 40.0% |
| !!! | GTTACTTTTACGTCAACCAC+AGG | - | chr5.4:54243892-54243911 | None:intergenic | 40.0% |
| AAAGACATGTCTGCTAGTGC+TGG | + | chr5.4:54242757-54242776 | MS.gene88720:CDS | 45.0% | |
| ACCAATGTTGGACAACACTG+AGG | - | chr5.4:54242911-54242930 | None:intergenic | 45.0% | |
| CAAGAACACTTGTATGCGAG+AGG | + | chr5.4:54241138-54241157 | MS.gene88720:CDS | 45.0% | |
| CACACGAAAGAGAATCCTCT+TGG | - | chr5.4:54242201-54242220 | None:intergenic | 45.0% | |
| CATAATGCGATCAGCCAAAG+AGG | + | chr5.4:54244543-54244562 | MS.gene88720:intron | 45.0% | |
| CATCCTCTTCAACACACAAG+AGG | + | chr5.4:54241249-54241268 | MS.gene88720:CDS | 45.0% | |
| CTCTTGTGTGTTGAAGAGGA+TGG | - | chr5.4:54241251-54241270 | None:intergenic | 45.0% | |
| CTGGTTCAAAATACGGGGTT+TGG | - | chr5.4:54241528-54241547 | None:intergenic | 45.0% | |
| GATGTCAGAAAACGCGTGAA+AGG | + | chr5.4:54245017-54245036 | MS.gene88720:CDS | 45.0% | |
| GGATTCTCTTTCGTGTGTGA+CGG | + | chr5.4:54242204-54242223 | MS.gene88720:intron | 45.0% | |
| GGGCCATATTGAAGAAAGCT+CGG | - | chr5.4:54241312-54241331 | None:intergenic | 45.0% | |
| GTGCACAGCTCTATAGGTAA+TGG | - | chr5.4:54243155-54243174 | None:intergenic | 45.0% | |
| GTGTGTTGAAGAGGATGGAT+TGG | - | chr5.4:54241246-54241265 | None:intergenic | 45.0% | |
| GTTACTATGTCCCAGCAGAA+AGG | + | chr5.4:54242579-54242598 | MS.gene88720:intron | 45.0% | |
| TACCCTCAGTCCATGTGATT+AGG | + | chr5.4:54242024-54242043 | MS.gene88720:intron | 45.0% | |
| TCAACACACCTCACATATGC+AGG | - | chr5.4:54241176-54241195 | None:intergenic | 45.0% | |
| TCCTCAGTGTTGTCCAACAT+TGG | + | chr5.4:54242907-54242926 | MS.gene88720:intron | 45.0% | |
| TGCTCACTATCACCAGAGAT+CGG | - | chr5.4:54243265-54243284 | None:intergenic | 45.0% | |
| TGGCTACTCTCCTAATCACA+TGG | - | chr5.4:54242037-54242056 | None:intergenic | 45.0% | |
| TTCTCAGACATCCCTTCTAC+GGG | + | chr5.4:54241335-54241354 | MS.gene88720:CDS | 45.0% | |
| TTGCCTCTTGTGTGTTGAAG+AGG | - | chr5.4:54241255-54241274 | None:intergenic | 45.0% | |
| TTGCGGCTTACATGCATTGA+CGG | + | chr5.4:54242442-54242461 | MS.gene88720:intron | 45.0% | |
| ! | AACTGTGATTGGTCAGCTCA+TGG | + | chr5.4:54241218-54241237 | MS.gene88720:CDS | 45.0% |
| ! | ATTCTTTTGGCGGTTTGCCT+TGG | + | chr5.4:54241883-54241902 | MS.gene88720:intron | 45.0% |
| ! | CTACACTATTGCACCGGTAT+TGG | - | chr5.4:54242992-54243011 | None:intergenic | 45.0% |
| ! | CTCCTAATCACATGGACTGA+GGG | - | chr5.4:54242029-54242048 | None:intergenic | 45.0% |
| ! | GGTGATGGTTCTCAGAATTC+AGG | + | chr5.4:54244449-54244468 | MS.gene88720:intron | 45.0% |
| ! | TCTCCTAATCACATGGACTG+AGG | - | chr5.4:54242030-54242049 | None:intergenic | 45.0% |
| ! | TCTTGTTATCTCCCGATCTC+TGG | + | chr5.4:54243250-54243269 | MS.gene88720:intron | 45.0% |
| !! | CAAACCCCGTATTTTGAACC+AGG | + | chr5.4:54241526-54241545 | MS.gene88720:CDS | 45.0% |
| !! | CAGCTTCTGGTTTGACTCAA+AGG | - | chr5.4:54245080-54245099 | None:intergenic | 45.0% |
| !! | GTGTTATGGTAATGGCTGAG+GGG | - | chr5.4:54244263-54244282 | None:intergenic | 45.0% |
| !! | GTTTTTAGGGGTCATCAGCA+AGG | + | chr5.4:54243530-54243549 | MS.gene88720:intron | 45.0% |
| ACCTATAGAGCTGTGCACCT+GGG | + | chr5.4:54243157-54243176 | MS.gene88720:intron | 50.0% | |
| AGAACAGTGACAACAGTGCC+AGG | + | chr5.4:54241399-54241418 | MS.gene88720:CDS | 50.0% | |
| CACATGCTTCACCCGTAGAA+GGG | - | chr5.4:54241349-54241368 | None:intergenic | 50.0% | |
| CAGCATTGCTGCATTCTGGT+TGG | - | chr5.4:54243570-54243589 | None:intergenic | 50.0% | |
| CCAGACACACTCTTGCTTTC+TGG | - | chr5.4:54241431-54241450 | None:intergenic | 50.0% | |
| GAACAGTGACAACAGTGCCA+GGG | + | chr5.4:54241400-54241419 | MS.gene88720:CDS | 50.0% | |
| GACACACTCTTGCTTTCTGG+AGG | - | chr5.4:54241428-54241447 | None:intergenic | 50.0% | |
| GATGCAGCATTGCTGCATTC+TGG | - | chr5.4:54243574-54243593 | None:intergenic | 50.0% | |
| GCTCACTATCACCAGAGATC+GGG | - | chr5.4:54243264-54243283 | None:intergenic | 50.0% | |
| GCTGGTGACTATCAAGAGTG+TGG | + | chr5.4:54243691-54243710 | MS.gene88720:CDS | 50.0% | |
| GGCTATAGCACTTAGCGTAG+TGG | + | chr5.4:54243077-54243096 | MS.gene88720:intron | 50.0% | |
| GTCAAACCAGAAGCTGCTGA+AGG | + | chr5.4:54245084-54245103 | MS.gene88720:CDS | 50.0% | |
| GTCAATGCATGTAAGCCGCA+AGG | - | chr5.4:54242443-54242462 | None:intergenic | 50.0% | |
| TACCTATAGAGCTGTGCACC+TGG | + | chr5.4:54243156-54243175 | MS.gene88720:intron | 50.0% | |
| TCACATGCTTCACCCGTAGA+AGG | - | chr5.4:54241350-54241369 | None:intergenic | 50.0% | |
| TCAGAAAACGCGTGAAAGGC+CGG | + | chr5.4:54245021-54245040 | MS.gene88720:CDS | 50.0% | |
| TTGCTTCTCTGGCTGTCCTT+CGG | + | chr5.4:54241283-54241302 | MS.gene88720:CDS | 50.0% | |
| ! | ATAAGGAAGCAGCATCGGAG+CGG | - | chr5.4:54241064-54241083 | None:intergenic | 50.0% |
| ! | CCAGAAAGCAAGAGTGTGTC+TGG | + | chr5.4:54241428-54241447 | MS.gene88720:CDS | 50.0% |
| ! | TGCAGCTTGATGACAGTCGA+TGG | + | chr5.4:54242387-54242406 | MS.gene88720:intron | 50.0% |
| ! | TGTGTCTGGTTCAGCTCAAG+TGG | + | chr5.4:54241442-54241461 | MS.gene88720:CDS | 50.0% |
| ! | TTTCCCCAGCTTTGACGAAC+CGG | - | chr5.4:54245043-54245062 | None:intergenic | 50.0% |
| AGTGCAGGAGCCTTTCTGCT+GGG | - | chr5.4:54242592-54242611 | None:intergenic | 55.0% | |
| ATTCTCAGGGCAAGGACACC+AGG | - | chr5.4:54243749-54243768 | None:intergenic | 55.0% | |
| CGGGCGCCTGGTTCAAAATA+CGG | - | chr5.4:54241535-54241554 | None:intergenic | 55.0% | |
| GAAGAAAGCTCGGAAGCCGA+AGG | - | chr5.4:54241302-54241321 | None:intergenic | 55.0% | |
| GGCAGTACACCAAAGACCTC+TGG | - | chr5.4:54241043-54241062 | None:intergenic | 55.0% | |
| GGCGCCTGGTTCAAAATACG+GGG | - | chr5.4:54241533-54241552 | None:intergenic | 55.0% | |
| GGGCGCCTGGTTCAAAATAC+GGG | - | chr5.4:54241534-54241553 | None:intergenic | 55.0% | |
| TAGTGCAGGAGCCTTTCTGC+TGG | - | chr5.4:54242593-54242612 | None:intergenic | 55.0% | |
| TTCTCAGGGCAAGGACACCA+GGG | - | chr5.4:54243748-54243767 | None:intergenic | 55.0% | |
| TTGCGGAGACCAGAGGTCTT+TGG | + | chr5.4:54241031-54241050 | MS.gene88720:CDS | 55.0% | |
| ! | CTTGCTTTCTGGAGGAACCC+TGG | - | chr5.4:54241420-54241439 | None:intergenic | 55.0% |
| ! | GCGATTTTTGCGGAGACCAG+AGG | + | chr5.4:54241024-54241043 | MS.gene88720:CDS | 55.0% |
| !! | AAAGGCCGGTTCGTCAAAGC+TGG | + | chr5.4:54245035-54245054 | MS.gene88720:CDS | 55.0% |
| !! | AAGGCCGGTTCGTCAAAGCT+GGG | + | chr5.4:54245036-54245055 | MS.gene88720:CDS | 55.0% |
| !! | CGTATTTTGAACCAGGCGCC+CGG | + | chr5.4:54241533-54241552 | MS.gene88720:CDS | 55.0% |
| CGGGGTTTGGCACTTGACTC+AGG | - | chr5.4:54241515-54241534 | None:intergenic | 60.0% | |
| GCCCAGGTGCACAGCTCTAT+AGG | - | chr5.4:54243161-54243180 | None:intergenic | 60.0% | |
| !! | AGGCCGGTTCGTCAAAGCTG+GGG | + | chr5.4:54245037-54245056 | MS.gene88720:CDS | 60.0% |
| !! | TCAAGGCGCTGTTGCTGCTG+AGG | + | chr5.4:54242792-54242811 | MS.gene88720:CDS | 60.0% |
| CATTGGAAGATCCGGGCGCC+TGG | - | chr5.4:54241547-54241566 | None:intergenic | 65.0% | |
| TCAGGGCAAGGACACCAGGG+AGG | - | chr5.4:54243745-54243764 | None:intergenic | 65.0% | |
| TTCTCACAGGGGAGCCTCCC+TGG | + | chr5.4:54243728-54243747 | MS.gene88720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54241011 | 54245103 | 54241011 | ID=MS.gene88720 |
| chr5.4 | mRNA | 54241011 | 54245103 | 54241011 | ID=MS.gene88720.t1;Parent=MS.gene88720 |
| chr5.4 | exon | 54241011 | 54241580 | 54241011 | ID=MS.gene88720.t1.exon1;Parent=MS.gene88720.t1 |
| chr5.4 | CDS | 54241011 | 54241580 | 54241011 | ID=cds.MS.gene88720.t1;Parent=MS.gene88720.t1 |
| chr5.4 | exon | 54242580 | 54242813 | 54242580 | ID=MS.gene88720.t1.exon2;Parent=MS.gene88720.t1 |
| chr5.4 | CDS | 54242580 | 54242813 | 54242580 | ID=cds.MS.gene88720.t1;Parent=MS.gene88720.t1 |
| chr5.4 | exon | 54243538 | 54243833 | 54243538 | ID=MS.gene88720.t1.exon3;Parent=MS.gene88720.t1 |
| chr5.4 | CDS | 54243538 | 54243833 | 54243538 | ID=cds.MS.gene88720.t1;Parent=MS.gene88720.t1 |
| chr5.4 | exon | 54244974 | 54245103 | 54244974 | ID=MS.gene88720.t1.exon4;Parent=MS.gene88720.t1 |
| chr5.4 | CDS | 54244974 | 54245103 | 54244974 | ID=cds.MS.gene88720.t1;Parent=MS.gene88720.t1 |
| Gene Sequence |
| Protein sequence |
