Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43742.t1 | XP_003615555.1 | 97.6 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 1.40E-193 | 685.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43742.t1 | Q9SSE5 | 55.4 | 424 | 121 | 12 | 1 | 409 | 1 | 371 | 1.1e-79 | 298.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43742.t1 | G7KE22 | 97.6 | 410 | 10 | 0 | 1 | 410 | 1 | 410 | 9.9e-194 | 685.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43742.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43742 | MS.gene044331 | PPI |
| MS.gene43742 | MS.gene70471 | PPI |
| MS.gene43742 | MS.gene88720 | PPI |
| MS.gene43742 | MS.gene009935 | PPI |
| MS.gene43742 | MS.gene25698 | PPI |
| MS.gene88720 | MS.gene43742 | PPI |
| MS.gene43742 | MS.gene44846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43742.t1 | MTR_5g069480 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 820 |
| MS.gene43742.t1 | MTR_3g082630 | 68.675 | 415 | 119 | 7 | 1 | 409 | 1 | 410 | 0.0 | 537 |
| MS.gene43742.t1 | MTR_5g069480 | 96.269 | 268 | 10 | 0 | 1 | 268 | 1 | 268 | 0.0 | 530 |
| MS.gene43742.t1 | MTR_2g088900 | 35.635 | 449 | 216 | 17 | 1 | 404 | 97 | 517 | 1.99e-69 | 228 |
| MS.gene43742.t1 | MTR_1g109350 | 49.138 | 116 | 55 | 2 | 1 | 115 | 1 | 113 | 1.88e-29 | 117 |
| MS.gene43742.t1 | MTR_7g108150 | 49.505 | 101 | 50 | 1 | 5 | 105 | 20 | 119 | 1.18e-28 | 115 |
| MS.gene43742.t1 | MTR_7g108150 | 54.902 | 51 | 23 | 0 | 344 | 394 | 319 | 369 | 2.93e-11 | 65.1 |
| MS.gene43742.t1 | MTR_7g083540 | 40.909 | 110 | 59 | 1 | 1 | 104 | 1 | 110 | 1.28e-20 | 93.2 |
| MS.gene43742.t1 | MTR_7g083540 | 67.347 | 49 | 16 | 0 | 349 | 397 | 337 | 385 | 1.80e-14 | 74.7 |
| MS.gene43742.t1 | MTR_1g013450 | 33.133 | 166 | 100 | 3 | 4 | 162 | 5 | 166 | 2.42e-19 | 88.6 |
| MS.gene43742.t1 | MTR_1g013450 | 41.463 | 82 | 39 | 1 | 313 | 394 | 224 | 296 | 7.45e-12 | 66.2 |
| MS.gene43742.t1 | MTR_3g105710 | 43.333 | 90 | 51 | 0 | 4 | 93 | 5 | 94 | 1.49e-18 | 85.9 |
| MS.gene43742.t1 | MTR_3g105710 | 54.902 | 51 | 23 | 0 | 350 | 400 | 229 | 279 | 2.11e-11 | 64.7 |
| MS.gene43742.t1 | MTR_4g128930 | 43.333 | 90 | 51 | 0 | 4 | 93 | 21 | 110 | 4.23e-18 | 85.5 |
| MS.gene43742.t1 | MTR_4g128930 | 61.702 | 47 | 18 | 0 | 352 | 398 | 297 | 343 | 2.74e-11 | 65.1 |
| MS.gene43742.t1 | MTR_7g018170 | 42.857 | 91 | 52 | 0 | 5 | 95 | 26 | 116 | 6.60e-17 | 82.4 |
| MS.gene43742.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 1.65e-13 | 70.1 |
| MS.gene43742.t1 | MTR_4g067320 | 35.417 | 96 | 53 | 1 | 1 | 87 | 1 | 96 | 1.68e-13 | 70.1 |
| MS.gene43742.t1 | MTR_3g117320 | 32.418 | 182 | 96 | 7 | 1 | 169 | 1 | 168 | 1.99e-13 | 69.7 |
| MS.gene43742.t1 | MTR_4g071200 | 36.082 | 97 | 52 | 1 | 1 | 87 | 1 | 97 | 3.80e-13 | 68.9 |
| MS.gene43742.t1 | MTR_1g023260 | 31.959 | 97 | 56 | 1 | 1 | 87 | 1 | 97 | 3.67e-12 | 65.5 |
| MS.gene43742.t1 | MTR_1g023260 | 31.959 | 97 | 56 | 1 | 1 | 87 | 1 | 97 | 5.01e-12 | 66.2 |
| MS.gene43742.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 5.80e-12 | 64.7 |
| MS.gene43742.t1 | MTR_5g021580 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 7.83e-12 | 64.3 |
| MS.gene43742.t1 | MTR_3g113070 | 31.633 | 98 | 56 | 1 | 1 | 87 | 1 | 98 | 1.04e-11 | 64.7 |
| MS.gene43742.t1 | MTR_2g073370 | 33.333 | 96 | 55 | 1 | 1 | 87 | 1 | 96 | 7.08e-11 | 63.2 |
| MS.gene43742.t1 | MTR_2g099010 | 32.292 | 96 | 56 | 1 | 1 | 87 | 1 | 96 | 9.86e-11 | 62.0 |
| MS.gene43742.t1 | MTR_2g099010 | 32.292 | 96 | 56 | 1 | 1 | 87 | 1 | 96 | 9.88e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43742.t1 | AT3G07650 | 52.830 | 424 | 132 | 12 | 1 | 409 | 1 | 371 | 3.55e-139 | 402 |
| MS.gene43742.t1 | AT3G07650 | 52.830 | 424 | 132 | 12 | 1 | 409 | 1 | 371 | 3.55e-139 | 402 |
| MS.gene43742.t1 | AT3G07650 | 52.830 | 424 | 132 | 12 | 1 | 409 | 1 | 371 | 3.55e-139 | 402 |
| MS.gene43742.t1 | AT3G07650 | 52.830 | 424 | 132 | 12 | 1 | 409 | 1 | 371 | 3.55e-139 | 402 |
| MS.gene43742.t1 | AT5G48250 | 52.706 | 425 | 132 | 13 | 1 | 409 | 1 | 372 | 8.02e-137 | 396 |
| MS.gene43742.t1 | AT4G15250 | 54.717 | 106 | 46 | 1 | 1 | 106 | 1 | 104 | 8.64e-35 | 131 |
| MS.gene43742.t1 | AT4G15250 | 54.737 | 95 | 42 | 1 | 309 | 403 | 233 | 326 | 1.77e-20 | 92.0 |
| MS.gene43742.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 8.42e-33 | 127 |
| MS.gene43742.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 352 | 395 | 356 | 399 | 3.25e-13 | 71.2 |
| MS.gene43742.t1 | AT2G33500 | 49.020 | 102 | 52 | 0 | 5 | 106 | 12 | 113 | 9.07e-33 | 127 |
| MS.gene43742.t1 | AT2G33500 | 70.455 | 44 | 13 | 0 | 352 | 395 | 355 | 398 | 3.32e-13 | 71.2 |
| MS.gene43742.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 1 | 114 | 1.04e-32 | 127 |
| MS.gene43742.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 252 | 361 | 6.33e-25 | 105 |
| MS.gene43742.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 1.11e-32 | 127 |
| MS.gene43742.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 256 | 365 | 6.48e-25 | 105 |
| MS.gene43742.t1 | AT3G21880 | 50.000 | 116 | 56 | 1 | 1 | 116 | 5 | 118 | 1.11e-32 | 127 |
| MS.gene43742.t1 | AT3G21880 | 48.739 | 119 | 49 | 4 | 292 | 407 | 256 | 365 | 6.48e-25 | 105 |
| MS.gene43742.t1 | AT1G28050 | 41.935 | 124 | 70 | 1 | 5 | 128 | 9 | 130 | 6.60e-31 | 123 |
| MS.gene43742.t1 | AT1G28050 | 30.168 | 179 | 110 | 4 | 224 | 397 | 261 | 429 | 3.54e-13 | 71.2 |
| MS.gene43742.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 3.58e-28 | 114 |
| MS.gene43742.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 10 | 115 | 3.58e-28 | 114 |
| MS.gene43742.t1 | AT1G68190 | 46.296 | 108 | 56 | 1 | 1 | 108 | 39 | 144 | 6.00e-28 | 114 |
| MS.gene43742.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 4.03e-27 | 108 |
| MS.gene43742.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 1.14e-26 | 108 |
| MS.gene43742.t1 | AT2G47890 | 49.020 | 102 | 50 | 1 | 4 | 105 | 12 | 111 | 1.40e-26 | 109 |
| MS.gene43742.t1 | AT2G47890 | 51.923 | 52 | 25 | 0 | 346 | 397 | 280 | 331 | 7.29e-11 | 63.5 |
| MS.gene43742.t1 | AT5G57660 | 26.980 | 404 | 198 | 13 | 5 | 402 | 22 | 334 | 1.05e-21 | 95.9 |
| MS.gene43742.t1 | AT5G24930 | 45.556 | 90 | 49 | 0 | 4 | 93 | 5 | 94 | 3.30e-20 | 91.7 |
| MS.gene43742.t1 | AT5G24930 | 60.784 | 51 | 20 | 0 | 348 | 398 | 290 | 340 | 1.57e-12 | 68.9 |
| MS.gene43742.t1 | AT2G24790 | 41.346 | 104 | 59 | 1 | 4 | 105 | 7 | 110 | 1.10e-18 | 86.3 |
| MS.gene43742.t1 | AT2G24790 | 50.847 | 59 | 29 | 0 | 344 | 402 | 220 | 278 | 8.28e-12 | 65.9 |
| MS.gene43742.t1 | AT2G24790 | 43.333 | 90 | 51 | 0 | 4 | 93 | 7 | 96 | 1.14e-18 | 84.7 |
| MS.gene43742.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 2.26e-17 | 83.6 |
| MS.gene43742.t1 | AT5G15840 | 45.055 | 91 | 50 | 0 | 5 | 95 | 20 | 110 | 3.04e-17 | 81.6 |
| MS.gene43742.t1 | AT5G15850 | 45.349 | 86 | 47 | 0 | 5 | 90 | 12 | 97 | 1.07e-16 | 81.3 |
| MS.gene43742.t1 | AT5G15850 | 51.613 | 62 | 27 | 2 | 333 | 394 | 269 | 327 | 4.00e-11 | 64.7 |
| MS.gene43742.t1 | AT3G02380 | 38.835 | 103 | 57 | 1 | 5 | 101 | 16 | 118 | 2.48e-15 | 77.0 |
| MS.gene43742.t1 | AT3G02380 | 66.667 | 42 | 14 | 0 | 353 | 394 | 278 | 319 | 2.15e-11 | 65.5 |
| MS.gene43742.t1 | AT2G31380 | 34.375 | 96 | 54 | 1 | 1 | 87 | 1 | 96 | 6.90e-13 | 68.6 |
| MS.gene43742.t1 | AT1G06040 | 34.375 | 96 | 54 | 1 | 1 | 87 | 1 | 96 | 1.24e-12 | 66.2 |
| MS.gene43742.t1 | AT4G38960 | 26.857 | 175 | 106 | 4 | 1 | 166 | 1 | 162 | 1.77e-12 | 66.2 |
| MS.gene43742.t1 | AT4G38960 | 26.857 | 175 | 106 | 4 | 1 | 166 | 1 | 162 | 1.77e-12 | 66.2 |
| MS.gene43742.t1 | AT1G06040 | 34.375 | 96 | 54 | 1 | 1 | 87 | 1 | 96 | 2.11e-12 | 67.0 |
| MS.gene43742.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 1.19e-11 | 65.5 |
| MS.gene43742.t1 | AT1G78600 | 31.250 | 96 | 57 | 1 | 1 | 87 | 1 | 96 | 1.30e-11 | 65.9 |
| MS.gene43742.t1 | AT2G21320 | 36.842 | 95 | 50 | 2 | 1 | 87 | 1 | 93 | 3.57e-11 | 62.0 |
| MS.gene43742.t1 | AT1G75540 | 32.323 | 99 | 55 | 1 | 1 | 87 | 1 | 99 | 4.05e-11 | 64.3 |
Find 81 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGACACACTCTTGCTTTC+TGG | 0.079702 | 5.1:-53869006 | None:intergenic |
| AGAAGGGATGTCTGAGAAAA+AGG | 0.263603 | 5.1:-53868908 | None:intergenic |
| CTTCCGAGCTTTCTTCAATA+TGG | 0.271446 | 5.1:+53868884 | MS.gene43742:CDS |
| GATGCAGCATTGCTGCATTC+TGG | 0.314142 | 5.1:-53871082 | None:intergenic |
| AGTGTAAACTCAGCAGCTTC+TGG | 0.321377 | 5.1:-53872611 | None:intergenic |
| CAATCAATCAATTGCTTCTC+TGG | 0.329875 | 5.1:+53868850 | MS.gene43742:CDS |
| TTCTCACAGGGGAGCCTCCC+TGG | 0.331546 | 5.1:+53871239 | MS.gene43742:CDS |
| TACCTTAGGCTTAAGTTCAT+TGG | 0.331901 | 5.1:-53869139 | None:intergenic |
| CAATGCTGTCATGCGTTATA+AGG | 0.336608 | 5.1:+53871306 | MS.gene43742:CDS |
| CTGGTTCAAAATACGGGGTT+TGG | 0.355047 | 5.1:-53869103 | None:intergenic |
| CTTTCCGTAAAATAAATAAC+TGG | 0.358970 | 5.1:-53871136 | None:intergenic |
| TTGCGGAGACCAGAGGTCTT+TGG | 0.371869 | 5.1:+53868609 | MS.gene43742:CDS |
| CACTTTGTCAGAACTGTGAT+TGG | 0.387558 | 5.1:+53868785 | MS.gene43742:CDS |
| TCACATGCTTCACCCGTAGA+AGG | 0.388659 | 5.1:-53868925 | None:intergenic |
| TTTCCCCAGCTTTGACGAAC+CGG | 0.416476 | 5.1:-53872561 | None:intergenic |
| CAGCTTCTGGTTTGACTCAA+AGG | 0.419857 | 5.1:-53872598 | None:intergenic |
| CTTAAGTTCATTGGAAGATC+CGG | 0.420398 | 5.1:-53869130 | None:intergenic |
| CGGGCGCCTGGTTCAAAATA+CGG | 0.425108 | 5.1:-53869110 | None:intergenic |
| AAAGGCCGGTTCGTCAAAGC+TGG | 0.426807 | 5.1:+53872556 | MS.gene43742:CDS |
| TTGCTTCTCTGGCTGTCCTT+CGG | 0.430721 | 5.1:+53868861 | MS.gene43742:CDS |
| TTTCTCAGACATCCCTTCTA+CGG | 0.434188 | 5.1:+53868912 | MS.gene43742:CDS |
| CCAGAAAGCAAGAGTGTGTC+TGG | 0.441871 | 5.1:+53869006 | MS.gene43742:CDS |
| GGGCGCCTGGTTCAAAATAC+GGG | 0.445144 | 5.1:-53869109 | None:intergenic |
| AGCAGATTGAATAGAATTCT+CGG | 0.457491 | 5.1:-53871275 | None:intergenic |
| AGAACAGTGACAACAGTGCC+AGG | 0.462494 | 5.1:+53868977 | MS.gene43742:CDS |
| GCAGATTGAATAGAATTCTC+GGG | 0.465896 | 5.1:-53871274 | None:intergenic |
| AGCTTCTGGTTTGACTCAAA+GGG | 0.472965 | 5.1:-53872597 | None:intergenic |
| TTCTCAGACATCCCTTCTAC+GGG | 0.474377 | 5.1:+53868913 | MS.gene43742:CDS |
| CTCGGGGCAAGGAGGACACC+AGG | 0.476613 | 5.1:-53871257 | None:intergenic |
| CATTGGAAGATCCGGGCGCC+TGG | 0.483294 | 5.1:-53869122 | None:intergenic |
| ATTTACAACCTGCATATGTA+AGG | 0.488185 | 5.1:+53868743 | MS.gene43742:CDS |
| AGAAAGTAAGATATGCTTCT+CGG | 0.490575 | 5.1:+53872503 | MS.gene43742:CDS |
| TTAAGTTCATTGGAAGATCC+GGG | 0.503987 | 5.1:-53869129 | None:intergenic |
| TAGTGCAAGAGCCTTTCTGC+TGG | 0.508800 | 5.1:-53870170 | None:intergenic |
| CTTGCTTTCTGGAGGAACCC+TGG | 0.509409 | 5.1:-53868995 | None:intergenic |
| TCAACACACCTTACATATGC+AGG | 0.509855 | 5.1:-53868751 | None:intergenic |
| CGGGGTTTGGCACTTGACTC+AGG | 0.510138 | 5.1:-53869090 | None:intergenic |
| TCGATCACACGACAAACATA+AGG | 0.512174 | 5.1:-53868656 | None:intergenic |
| TTGCCTCTTGTGTGTTGAAG+AGG | 0.512520 | 5.1:-53868830 | None:intergenic |
| TGATTTCAACATAGATGAGA+TGG | 0.515486 | 5.1:+53870216 | MS.gene43742:CDS |
| ACTTCTTCAATGCTTCTCAC+AGG | 0.517555 | 5.1:+53871226 | MS.gene43742:CDS |
| TCAGAAAACGTGTGAAAGGC+CGG | 0.518186 | 5.1:+53872542 | MS.gene43742:CDS |
| TTCCAATGAACTTAAGCCTA+AGG | 0.522978 | 5.1:+53869137 | MS.gene43742:CDS |
| CTCTTGTGTGTTGAAGAGGA+TGG | 0.523560 | 5.1:-53868826 | None:intergenic |
| TGTTAACGCCAGAAAATGAA+AGG | 0.527986 | 5.1:-53871168 | None:intergenic |
| GGCAGTACACCAAAGACCTC+TGG | 0.535687 | 5.1:-53868618 | None:intergenic |
| CTTCTTCAATGCTTCTCACA+GGG | 0.540534 | 5.1:+53871227 | MS.gene43742:CDS |
| GATATGCTTCTCGGAAGGCA+AGG | 0.543762 | 5.1:+53872512 | MS.gene43742:CDS |
| TGAATAGAATTCTCGGGGCA+AGG | 0.546742 | 5.1:-53871268 | None:intergenic |
| CACATGCTTCACCCGTAGAA+GGG | 0.554759 | 5.1:-53868924 | None:intergenic |
| CAGCATTGCTGCATTCTGGT+TGG | 0.554970 | 5.1:-53871078 | None:intergenic |
| TGTGTCTGGTTCAGCTCAAG+TGG | 0.560306 | 5.1:+53869020 | MS.gene43742:CDS |
| AAAGACATGTCTGCTAGTGC+TGG | 0.564402 | 5.1:+53870337 | MS.gene43742:CDS |
| AACTGTGATTGGTTAGCTCA+TGG | 0.565628 | 5.1:+53868796 | MS.gene43742:CDS |
| TCAAGGCGCTGTTGCTGCTG+AGG | 0.568931 | 5.1:+53870372 | MS.gene43742:CDS |
| GATGTCAGAAAACGTGTGAA+AGG | 0.569991 | 5.1:+53872538 | MS.gene43742:CDS |
| AGTGCAAGAGCCTTTCTGCT+GGG | 0.574032 | 5.1:-53870169 | None:intergenic |
| ATATGCTTCTCGGAAGGCAA+GGG | 0.575562 | 5.1:+53872513 | MS.gene43742:CDS |
| GTTACTATGTCCCAGCAGAA+AGG | 0.575589 | 5.1:+53870159 | MS.gene43742:intron |
| GGGCCATATTGAAGAAAGCT+CGG | 0.577030 | 5.1:-53868887 | None:intergenic |
| AAGGCCGGTTCGTCAAAGCT+GGG | 0.589643 | 5.1:+53872557 | MS.gene43742:CDS |
| GACACACTCTTGCTTTCTGG+AGG | 0.592085 | 5.1:-53869003 | None:intergenic |
| GTGTGTTGAAGAGGATGGAT+TGG | 0.598104 | 5.1:-53868821 | None:intergenic |
| TGTGAAGATGATAAGTTGCT+TGG | 0.611126 | 5.1:+53870193 | MS.gene43742:CDS |
| AGTAAGATATGCTTCTCGGA+AGG | 0.619208 | 5.1:+53872507 | MS.gene43742:CDS |
| GAAGAAAGCTCGGAAGCCGA+AGG | 0.625937 | 5.1:-53868877 | None:intergenic |
| CATCCTCTTCAACACACAAG+AGG | 0.627085 | 5.1:+53868827 | MS.gene43742:CDS |
| GTTAACAAAGATACTAGTGC+TGG | 0.627470 | 5.1:+53871184 | MS.gene43742:CDS |
| TCGGGGCAAGGAGGACACCA+GGG | 0.628096 | 5.1:-53871256 | None:intergenic |
| CAGATTGAATAGAATTCTCG+GGG | 0.628312 | 5.1:-53871273 | None:intergenic |
| GGCGCCTGGTTCAAAATACG+GGG | 0.642690 | 5.1:-53869108 | None:intergenic |
| GCTGGTGATTCAAATTGTCA+AGG | 0.642760 | 5.1:+53870355 | MS.gene43742:CDS |
| CAAGAACACTTGTATGCGAG+AGG | 0.643376 | 5.1:+53868716 | MS.gene43742:CDS |
| TTCTTCAATGCTTCTCACAG+GGG | 0.656918 | 5.1:+53871228 | MS.gene43742:CDS |
| AGGCCGGTTCGTCAAAGCTG+GGG | 0.660571 | 5.1:+53872558 | MS.gene43742:CDS |
| GGGCAAGGAGGACACCAGGG+AGG | 0.662427 | 5.1:-53871253 | None:intergenic |
| GAACAGTGACAACAGTGCCA+GGG | 0.668906 | 5.1:+53868978 | MS.gene43742:CDS |
| GAAGCATGTGAACATAAACT+CGG | 0.675189 | 5.1:+53868937 | MS.gene43742:CDS |
| ATAGAATTCTCGGGGCAAGG+AGG | 0.730840 | 5.1:-53871265 | None:intergenic |
| GCTGGTGACTATCAAGAGTG+TGG | 0.743394 | 5.1:+53871202 | MS.gene43742:CDS |
| ATAAGGAAGCAGCATCAGAG+CGG | 0.751405 | 5.1:-53868639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGTCTTTATTAAAAAA+CGG | - | chr5.1:53871579-53871598 | None:intergenic | 10.0% |
| !! | AAATAAAATAATACTACTTG+TGG | + | chr5.1:53871937-53871956 | MS.gene43742:intron | 15.0% |
| !! | TTTATATGTTAGTTGTTTAA+TGG | + | chr5.1:53869403-53869422 | MS.gene43742:intron | 15.0% |
| !!! | ACATACTTTTTTAATCAAAT+TGG | - | chr5.1:53869637-53869656 | None:intergenic | 15.0% |
| !! | AAACCTTCAAATGAATATAA+AGG | - | chr5.1:53870835-53870854 | None:intergenic | 20.0% |
| !! | AAATGAATATAAAGGACTTA+AGG | - | chr5.1:53870827-53870846 | None:intergenic | 20.0% |
| !! | AATACAAAACCTATAAAACT+AGG | - | chr5.1:53870984-53871003 | None:intergenic | 20.0% |
| !! | CATGAAAGATTAAATAAGAA+AGG | - | chr5.1:53870128-53870147 | None:intergenic | 20.0% |
| !! | CATTCATATCAATTACATAA+TGG | - | chr5.1:53869699-53869718 | None:intergenic | 20.0% |
| !! | TGAATTAGTTACTGTATTTA+TGG | + | chr5.1:53869728-53869747 | MS.gene43742:intron | 20.0% |
| !! | TTAAAGTAGTTGCAAATATA+TGG | + | chr5.1:53872250-53872269 | MS.gene43742:intron | 20.0% |
| !! | TTATCTATAACTTAAGATAG+AGG | - | chr5.1:53869297-53869316 | None:intergenic | 20.0% |
| !!! | AAAGGTATTAAATATTGTAC+TGG | - | chr5.1:53872210-53872229 | None:intergenic | 20.0% |
| !!! | AATAAAGACATTTAAAGCTT+AGG | + | chr5.1:53871585-53871604 | MS.gene43742:intron | 20.0% |
| !!! | GAAAGAATAAGAGATTTTTA+AGG | - | chr5.1:53871720-53871739 | None:intergenic | 20.0% |
| !!! | TATCTAAACTTCTGTTTTTA+GGG | + | chr5.1:53871028-53871047 | MS.gene43742:intron | 20.0% |
| !!! | TATTTATAGTTTGCTTTTGT+TGG | + | chr5.1:53871743-53871762 | MS.gene43742:intron | 20.0% |
| !!! | TGAACCAGTTATTTATTTTA+CGG | + | chr5.1:53871132-53871151 | MS.gene43742:CDS | 20.0% |
| !!! | TGCAACTACTTTAAAAATAA+GGG | - | chr5.1:53872244-53872263 | None:intergenic | 20.0% |
| !!! | TTGCAACTACTTTAAAAATA+AGG | - | chr5.1:53872245-53872264 | None:intergenic | 20.0% |
| ! | AAGCTATTAATTAGATGTGA+TGG | + | chr5.1:53869322-53869341 | MS.gene43742:intron | 25.0% |
| ! | AATAATACTACTTGTGGAAA+TGG | + | chr5.1:53871943-53871962 | MS.gene43742:intron | 25.0% |
| ! | AGTCCTTTATATTCATTTGA+AGG | + | chr5.1:53870829-53870848 | MS.gene43742:intron | 25.0% |
| ! | ATATAAAGGACTTAAGGAAT+TGG | - | chr5.1:53870821-53870840 | None:intergenic | 25.0% |
| ! | CCAAAATTATAGCTAACAAA+GGG | - | chr5.1:53870414-53870433 | None:intergenic | 25.0% |
| ! | CTTTCCGTAAAATAAATAAC+TGG | - | chr5.1:53871139-53871158 | None:intergenic | 25.0% |
| ! | GAACAATTATACATGTACAT+AGG | - | chr5.1:53869912-53869931 | None:intergenic | 25.0% |
| ! | GATACTATTTACATATCCAA+TGG | + | chr5.1:53871364-53871383 | MS.gene43742:intron | 25.0% |
| ! | GTACATGTATAATTGTTCTT+GGG | + | chr5.1:53869914-53869933 | MS.gene43742:intron | 25.0% |
| ! | TAAAATTATATCAACGCCAT+TGG | - | chr5.1:53871383-53871402 | None:intergenic | 25.0% |
| ! | TAATTGATATGAATGTCGTT+AGG | + | chr5.1:53869704-53869723 | MS.gene43742:intron | 25.0% |
| ! | TATTTAATACCTTTCTCCAA+TGG | + | chr5.1:53872216-53872235 | MS.gene43742:intron | 25.0% |
| ! | TCTCTATTGATCTTATTCTT+AGG | + | chr5.1:53871683-53871702 | MS.gene43742:intron | 25.0% |
| ! | TGTACATGTATAATTGTTCT+TGG | + | chr5.1:53869913-53869932 | MS.gene43742:intron | 25.0% |
| ! | TTACTTATAATCTCAAAGCT+TGG | + | chr5.1:53872428-53872447 | MS.gene43742:intron | 25.0% |
| !! | TAGGAATGTGTTATTATTCA+TGG | - | chr5.1:53871535-53871554 | None:intergenic | 25.0% |
| !! | TATTAAGTGTTGTCAAATAG+TGG | + | chr5.1:53870567-53870586 | MS.gene43742:intron | 25.0% |
| !! | TTTTGAACTTGAGAACTATA+CGG | + | chr5.1:53870240-53870259 | MS.gene43742:CDS | 25.0% |
| !!! | AAGAGATTTTTAAGGTAGTT+TGG | - | chr5.1:53871712-53871731 | None:intergenic | 25.0% |
| !!! | ATCTAAACTTCTGTTTTTAG+GGG | + | chr5.1:53871029-53871048 | MS.gene43742:intron | 25.0% |
| !!! | CAGTTATTTATTTTACGGAA+AGG | + | chr5.1:53871137-53871156 | MS.gene43742:CDS | 25.0% |
| !!! | GTATCTAAACTTCTGTTTTT+AGG | + | chr5.1:53871027-53871046 | MS.gene43742:intron | 25.0% |
| !!! | TCTGAAGAGTTTTTTGAAAA+TGG | + | chr5.1:53870289-53870308 | MS.gene43742:CDS | 25.0% |
| !!! | TGCTCTTTTGCATTTAAAAT+TGG | + | chr5.1:53872317-53872336 | MS.gene43742:intron | 25.0% |
| !!! | TTTAAAAATAAGGGTACCAT+TGG | - | chr5.1:53872235-53872254 | None:intergenic | 25.0% |
| AAATCATGAAGCTATACCTT+AGG | - | chr5.1:53869156-53869175 | None:intergenic | 30.0% | |
| AGAAAGTAAGATATGCTTCT+CGG | + | chr5.1:53872503-53872522 | MS.gene43742:CDS | 30.0% | |
| AGAGGGATAGAATATTGTAT+TGG | + | chr5.1:53872082-53872101 | MS.gene43742:intron | 30.0% | |
| AGCAGATTGAATAGAATTCT+CGG | - | chr5.1:53871278-53871297 | None:intergenic | 30.0% | |
| ATACAGACACGAAACAATAA+AGG | - | chr5.1:53869496-53869515 | None:intergenic | 30.0% | |
| ATTTACAACCTGCATATGTA+AGG | + | chr5.1:53868743-53868762 | MS.gene43742:CDS | 30.0% | |
| CATATTGCAGTTACAAGATT+AGG | - | chr5.1:53869188-53869207 | None:intergenic | 30.0% | |
| CATCTGGAAAACCATTAAAA+TGG | - | chr5.1:53871612-53871631 | None:intergenic | 30.0% | |
| CTCATATTATGTGTCTCATT+TGG | - | chr5.1:53872378-53872397 | None:intergenic | 30.0% | |
| CTGAAAACTGTGGAATAAAA+AGG | - | chr5.1:53871856-53871875 | None:intergenic | 30.0% | |
| CTTTCTTATCAAACCTGAAA+TGG | - | chr5.1:53872489-53872508 | None:intergenic | 30.0% | |
| GCCAAAATTATAGCTAACAA+AGG | - | chr5.1:53870415-53870434 | None:intergenic | 30.0% | |
| GCGGTAGTAATAAATAGAAT+AGG | + | chr5.1:53871893-53871912 | MS.gene43742:intron | 30.0% | |
| GGAGTAATAGTTATTCTTCT+CGG | - | chr5.1:53872123-53872142 | None:intergenic | 30.0% | |
| TACAATATTCTATCCCTCTT+TGG | - | chr5.1:53872081-53872100 | None:intergenic | 30.0% | |
| TACAGACACGAAACAATAAA+GGG | - | chr5.1:53869495-53869514 | None:intergenic | 30.0% | |
| TAGGGAAATGAAATGTTAAG+TGG | + | chr5.1:53869854-53869873 | MS.gene43742:intron | 30.0% | |
| TGATTTCAACATAGATGAGA+TGG | + | chr5.1:53870216-53870235 | MS.gene43742:CDS | 30.0% | |
| TGGTGTAAAACAATGAGAAT+AGG | - | chr5.1:53871515-53871534 | None:intergenic | 30.0% | |
| TGTATAATTGTTCTTGGGTT+TGG | + | chr5.1:53869919-53869938 | MS.gene43742:intron | 30.0% | |
| TTCAGTTCACTGAAATGATT+AGG | + | chr5.1:53871871-53871890 | MS.gene43742:intron | 30.0% | |
| TTCTCTGAATGAATTGTTTG+TGG | + | chr5.1:53869244-53869263 | MS.gene43742:intron | 30.0% | |
| TTTAGTGAAATGAGTTACAC+AGG | + | chr5.1:53870097-53870116 | MS.gene43742:intron | 30.0% | |
| TTTCAAAAAACTCTTCAGAG+TGG | - | chr5.1:53870288-53870307 | None:intergenic | 30.0% | |
| ! | AAAGCTTAGGTCCATTTTAA+TGG | + | chr5.1:53871598-53871617 | MS.gene43742:intron | 30.0% |
| ! | AGAACATTTAGTTTCCTTTG+GGG | + | chr5.1:53870957-53870976 | MS.gene43742:intron | 30.0% |
| ! | AGAGAACATTTAGTTTCCTT+TGG | + | chr5.1:53870955-53870974 | MS.gene43742:intron | 30.0% |
| ! | CAATCAAACCTTTCATTTTC+TGG | + | chr5.1:53871160-53871179 | MS.gene43742:CDS | 30.0% |
| ! | CCCTTTGTTAGCTATAATTT+TGG | + | chr5.1:53870411-53870430 | MS.gene43742:intron | 30.0% |
| ! | CGTTGATATAATTTTACCTG+TGG | + | chr5.1:53871387-53871406 | MS.gene43742:intron | 30.0% |
| ! | GAGAACATTTAGTTTCCTTT+GGG | + | chr5.1:53870956-53870975 | MS.gene43742:intron | 30.0% |
| ! | GTTTGTGGAAATTTGTTTGA+CGG | + | chr5.1:53869259-53869278 | MS.gene43742:intron | 30.0% |
| ! | TGGAATAAAAAGGTATAGCA+TGG | - | chr5.1:53871846-53871865 | None:intergenic | 30.0% |
| ! | TTCACAAAGTGTTATGGTAA+TGG | - | chr5.1:53871786-53871805 | None:intergenic | 30.0% |
| ! | TTCTAGTCGAATGATTCTTT+TGG | + | chr5.1:53869450-53869469 | MS.gene43742:intron | 30.0% |
| !! | ATCTGCTCATGTTTTTGTTA+TGG | + | chr5.1:53871436-53871455 | MS.gene43742:intron | 30.0% |
| !!! | GAAGAGTTTTTTGAAAATGG+TGG | + | chr5.1:53870292-53870311 | MS.gene43742:CDS | 30.0% |
| !!! | TTTGTTTTTGCTTGGAAGAT+CGG | - | chr5.1:53869046-53869065 | None:intergenic | 30.0% |
| AAACGCATAATATGAGACAG+AGG | - | chr5.1:53872145-53872164 | None:intergenic | 35.0% | |
| AACGCATAATATGAGACAGA+GGG | - | chr5.1:53872144-53872163 | None:intergenic | 35.0% | |
| ACAGACACGAAACAATAAAG+GGG | - | chr5.1:53869494-53869513 | None:intergenic | 35.0% | |
| AGAAAACCTTAGACAACATC+TGG | - | chr5.1:53871628-53871647 | None:intergenic | 35.0% | |
| AGTTCACTGAAATGATTAGG+CGG | + | chr5.1:53871874-53871893 | MS.gene43742:intron | 35.0% | |
| ATACATGTACATAGGTGACA+AGG | - | chr5.1:53869904-53869923 | None:intergenic | 35.0% | |
| CAATAGAGACATTAGAGAGA+AGG | - | chr5.1:53871672-53871691 | None:intergenic | 35.0% | |
| CAATCAATCAATTGCTTCTC+TGG | + | chr5.1:53868850-53868869 | MS.gene43742:CDS | 35.0% | |
| CAGATTGAATAGAATTCTCG+GGG | - | chr5.1:53871276-53871295 | None:intergenic | 35.0% | |
| CATCTCAAATTGTGGTCTTT+GGG | + | chr5.1:53869822-53869841 | MS.gene43742:intron | 35.0% | |
| CTATAGACTGATCTTCTAGT+TGG | + | chr5.1:53870716-53870735 | MS.gene43742:intron | 35.0% | |
| CTCAGTTATGTGACATGTAA+CGG | - | chr5.1:53870460-53870479 | None:intergenic | 35.0% | |
| CTTAAGTTCATTGGAAGATC+CGG | - | chr5.1:53869133-53869152 | None:intergenic | 35.0% | |
| CTTCCAAGCAAAAACAAATC+TGG | + | chr5.1:53869048-53869067 | MS.gene43742:CDS | 35.0% | |
| GAAGCATGTGAACATAAACT+CGG | + | chr5.1:53868937-53868956 | MS.gene43742:CDS | 35.0% | |
| GCAGATTGAATAGAATTCTC+GGG | - | chr5.1:53871277-53871296 | None:intergenic | 35.0% | |
| GTAATAGTTATTCTTCTCGG+TGG | - | chr5.1:53872120-53872139 | None:intergenic | 35.0% | |
| GTTAACAAAGATACTAGTGC+TGG | + | chr5.1:53871184-53871203 | MS.gene43742:CDS | 35.0% | |
| GTTCAAGCTACTGATAAATC+AGG | - | chr5.1:53869543-53869562 | None:intergenic | 35.0% | |
| TACCTTAGGCTTAAGTTCAT+TGG | - | chr5.1:53869142-53869161 | None:intergenic | 35.0% | |
| TCAAAGCTTGGTTGCTATAT+GGG | + | chr5.1:53872440-53872459 | MS.gene43742:intron | 35.0% | |
| TCATCTCAAATTGTGGTCTT+TGG | + | chr5.1:53869821-53869840 | MS.gene43742:intron | 35.0% | |
| TGACACATCATCTCAAATTG+TGG | + | chr5.1:53869814-53869833 | MS.gene43742:intron | 35.0% | |
| TGTGAAGATGATAAGTTGCT+TGG | + | chr5.1:53870193-53870212 | MS.gene43742:CDS | 35.0% | |
| TGTTAACGCCAGAAAATGAA+AGG | - | chr5.1:53871171-53871190 | None:intergenic | 35.0% | |
| TTAAGTTCATTGGAAGATCC+GGG | - | chr5.1:53869132-53869151 | None:intergenic | 35.0% | |
| TTCCAATGAACTTAAGCCTA+AGG | + | chr5.1:53869137-53869156 | MS.gene43742:CDS | 35.0% | |
| TTGTTCTGCTATACGCTATT+TGG | + | chr5.1:53870544-53870563 | MS.gene43742:intron | 35.0% | |
| TTTCAGTGAACTGAAAACTG+TGG | - | chr5.1:53871866-53871885 | None:intergenic | 35.0% | |
| ! | AGTTCGTTCACAAAGTGTTA+TGG | - | chr5.1:53871792-53871811 | None:intergenic | 35.0% |
| ! | GGTTCTTTATGCGATTTTTG+CGG | + | chr5.1:53868592-53868611 | MS.gene43742:CDS | 35.0% |
| ! | GTTATGATGAATGCCATTTC+AGG | + | chr5.1:53872473-53872492 | MS.gene43742:intron | 35.0% |
| ! | TAGTCGAATGATTCTTTTGG+CGG | + | chr5.1:53869453-53869472 | MS.gene43742:intron | 35.0% |
| ! | TTTGATAGAGTTGATCGAGT+AGG | - | chr5.1:53871554-53871573 | None:intergenic | 35.0% |
| !! | GTCTTTGGGTTTTGATGATA+GGG | + | chr5.1:53869836-53869855 | MS.gene43742:intron | 35.0% |
| ACAATAAAGGGGCAAAACCA+AGG | - | chr5.1:53869483-53869502 | None:intergenic | 40.0% | |
| ACTACTTGTGGAAATGGTGA+TGG | + | chr5.1:53871949-53871968 | MS.gene43742:intron | 40.0% | |
| ACTTCTTCAATGCTTCTCAC+AGG | + | chr5.1:53871226-53871245 | MS.gene43742:CDS | 40.0% | |
| AGAAGGGATGTCTGAGAAAA+AGG | - | chr5.1:53868911-53868930 | None:intergenic | 40.0% | |
| AGTAAGATATGCTTCTCGGA+AGG | + | chr5.1:53872507-53872526 | MS.gene43742:CDS | 40.0% | |
| AGTAGCTTGAACTTCAAAGC+AGG | + | chr5.1:53869551-53869570 | MS.gene43742:intron | 40.0% | |
| ATAATGCGATCAGCCAAAGA+GGG | + | chr5.1:53872065-53872084 | MS.gene43742:intron | 40.0% | |
| ATGTCGTCGTTGTTAACAAG+TGG | - | chr5.1:53870048-53870067 | None:intergenic | 40.0% | |
| CAATGCTGTCATGCGTTATA+AGG | + | chr5.1:53871306-53871325 | MS.gene43742:CDS | 40.0% | |
| CACTTTGTCAGAACTGTGAT+TGG | + | chr5.1:53868785-53868804 | MS.gene43742:CDS | 40.0% | |
| CTACACTATTGCACCAATGT+TGG | - | chr5.1:53870503-53870522 | None:intergenic | 40.0% | |
| CTATAAAACTAGGACCCCAA+AGG | - | chr5.1:53870974-53870993 | None:intergenic | 40.0% | |
| CTCAAAGCTTGGTTGCTATA+TGG | + | chr5.1:53872439-53872458 | MS.gene43742:intron | 40.0% | |
| CTTCATTTCAACGTTCCAAG+AGG | + | chr5.1:53869763-53869782 | MS.gene43742:intron | 40.0% | |
| CTTCCGAGCTTTCTTCAATA+TGG | + | chr5.1:53868884-53868903 | MS.gene43742:CDS | 40.0% | |
| CTTCTTCAATGCTTCTCACA+GGG | + | chr5.1:53871227-53871246 | MS.gene43742:CDS | 40.0% | |
| GAAGGGATGTCTGAGAAAAA+GGG | - | chr5.1:53868910-53868929 | None:intergenic | 40.0% | |
| GATGTCAGAAAACGTGTGAA+AGG | + | chr5.1:53872538-53872557 | MS.gene43742:CDS | 40.0% | |
| GCAATATGTTTGTCGCACAA+CGG | + | chr5.1:53869200-53869219 | MS.gene43742:intron | 40.0% | |
| GCTGGTGATTCAAATTGTCA+AGG | + | chr5.1:53870355-53870374 | MS.gene43742:CDS | 40.0% | |
| TACCTTCAGTCCATGTGATT+AGG | + | chr5.1:53869604-53869623 | MS.gene43742:intron | 40.0% | |
| TCAACACACCTTACATATGC+AGG | - | chr5.1:53868754-53868773 | None:intergenic | 40.0% | |
| TCGATCACACGACAAACATA+AGG | - | chr5.1:53868659-53868678 | None:intergenic | 40.0% | |
| TTCTTCAATGCTTCTCACAG+GGG | + | chr5.1:53871228-53871247 | MS.gene43742:CDS | 40.0% | |
| TTGAACTTCAAAGCAGGAAC+AGG | + | chr5.1:53869557-53869576 | MS.gene43742:intron | 40.0% | |
| TTGATTTCTCTACAATGCCC+AGG | - | chr5.1:53870688-53870707 | None:intergenic | 40.0% | |
| TTTCTCAGACATCCCTTCTA+CGG | + | chr5.1:53868912-53868931 | MS.gene43742:CDS | 40.0% | |
| ! | AACTGTGATTGGTTAGCTCA+TGG | + | chr5.1:53868796-53868815 | MS.gene43742:CDS | 40.0% |
| ! | GCAAAGAAACAATAGCCTTG+CGG | + | chr5.1:53870005-53870024 | MS.gene43742:intron | 40.0% |
| ! | GGTTTTCCAGATGTTGTCTA+AGG | + | chr5.1:53871619-53871638 | MS.gene43742:intron | 40.0% |
| !! | AAGTGTTATGGTAATGGCTG+AGG | - | chr5.1:53871780-53871799 | None:intergenic | 40.0% |
| !! | AGCTTCTGGTTTGACTCAAA+GGG | - | chr5.1:53872600-53872619 | None:intergenic | 40.0% |
| !! | AGTGTTATGGTAATGGCTGA+GGG | - | chr5.1:53871779-53871798 | None:intergenic | 40.0% |
| !! | ATAAGGGTACCATTGGAGAA+AGG | - | chr5.1:53872228-53872247 | None:intergenic | 40.0% |
| !! | GGTCTTTGGGTTTTGATGAT+AGG | + | chr5.1:53869835-53869854 | MS.gene43742:intron | 40.0% |
| !! | GGTGTTTTTGCTCAGAATTC+AGG | + | chr5.1:53871970-53871989 | MS.gene43742:intron | 40.0% |
| !!! | ACGCCAGATTTGTTTTTGCT+TGG | - | chr5.1:53869054-53869073 | None:intergenic | 40.0% |
| !!! | CTTTGGGGTCCTAGTTTTAT+AGG | + | chr5.1:53870972-53870991 | MS.gene43742:intron | 40.0% |
| !!! | GTTACTTTTACGTCAACCAC+AGG | - | chr5.1:53871406-53871425 | None:intergenic | 40.0% |
| AAAGACATGTCTGCTAGTGC+TGG | + | chr5.1:53870337-53870356 | MS.gene43742:CDS | 45.0% | |
| ACCAATGTTGGACAACACTG+AGG | - | chr5.1:53870491-53870510 | None:intergenic | 45.0% | |
| ATAAGGAAGCAGCATCAGAG+CGG | - | chr5.1:53868642-53868661 | None:intergenic | 45.0% | |
| ATATGCTTCTCGGAAGGCAA+GGG | + | chr5.1:53872513-53872532 | MS.gene43742:CDS | 45.0% | |
| CAAGAACACTTGTATGCGAG+AGG | + | chr5.1:53868716-53868735 | MS.gene43742:CDS | 45.0% | |
| CACACGAAAGAGAATCCTCT+TGG | - | chr5.1:53869781-53869800 | None:intergenic | 45.0% | |
| CATAATGCGATCAGCCAAAG+AGG | + | chr5.1:53872064-53872083 | MS.gene43742:intron | 45.0% | |
| CATCCTCTTCAACACACAAG+AGG | + | chr5.1:53868827-53868846 | MS.gene43742:CDS | 45.0% | |
| CTCTTGTGTGTTGAAGAGGA+TGG | - | chr5.1:53868829-53868848 | None:intergenic | 45.0% | |
| CTGGTTCAAAATACGGGGTT+TGG | - | chr5.1:53869106-53869125 | None:intergenic | 45.0% | |
| GATTCTCTTTCGTGTGTGAC+GGG | + | chr5.1:53869785-53869804 | MS.gene43742:intron | 45.0% | |
| GGATTCTCTTTCGTGTGTGA+CGG | + | chr5.1:53869784-53869803 | MS.gene43742:intron | 45.0% | |
| GGGCCATATTGAAGAAAGCT+CGG | - | chr5.1:53868890-53868909 | None:intergenic | 45.0% | |
| GTGTGTTGAAGAGGATGGAT+TGG | - | chr5.1:53868824-53868843 | None:intergenic | 45.0% | |
| GTTACTATGTCCCAGCAGAA+AGG | + | chr5.1:53870159-53870178 | MS.gene43742:intron | 45.0% | |
| TCAGAAAACGTGTGAAAGGC+CGG | + | chr5.1:53872542-53872561 | MS.gene43742:CDS | 45.0% | |
| TCCTCAGTGTTGTCCAACAT+TGG | + | chr5.1:53870487-53870506 | MS.gene43742:intron | 45.0% | |
| TGAATAGAATTCTCGGGGCA+AGG | - | chr5.1:53871271-53871290 | None:intergenic | 45.0% | |
| TGCACAGCTCTATAGGTACT+GGG | - | chr5.1:53870665-53870684 | None:intergenic | 45.0% | |
| TGCTCACTATCACCAGAGAT+CGG | - | chr5.1:53870776-53870795 | None:intergenic | 45.0% | |
| TGGCTACTCTCCTAATCACA+TGG | - | chr5.1:53869617-53869636 | None:intergenic | 45.0% | |
| TTCTCAGACATCCCTTCTAC+GGG | + | chr5.1:53868913-53868932 | MS.gene43742:CDS | 45.0% | |
| TTGCCTCTTGTGTGTTGAAG+AGG | - | chr5.1:53868833-53868852 | None:intergenic | 45.0% | |
| TTGCGGCTTACATGCATTGA+CGG | + | chr5.1:53870022-53870041 | MS.gene43742:intron | 45.0% | |
| ! | ATTCTTTTGGCGGTTTGCCT+TGG | + | chr5.1:53869463-53869482 | MS.gene43742:intron | 45.0% |
| ! | CTCCTAATCACATGGACTGA+AGG | - | chr5.1:53869609-53869628 | None:intergenic | 45.0% |
| ! | TCTTGTTATCTCCCGATCTC+TGG | + | chr5.1:53870761-53870780 | MS.gene43742:intron | 45.0% |
| !! | CAAACCCCGTATTTTGAACC+AGG | + | chr5.1:53869104-53869123 | MS.gene43742:CDS | 45.0% |
| !! | CAGCTTCTGGTTTGACTCAA+AGG | - | chr5.1:53872601-53872620 | None:intergenic | 45.0% |
| !! | GTGTTATGGTAATGGCTGAG+GGG | - | chr5.1:53871778-53871797 | None:intergenic | 45.0% |
| !! | GTTTTTAGGGGTCATCAGCA+AGG | + | chr5.1:53871041-53871060 | MS.gene43742:intron | 45.0% |
| ACCTATAGAGCTGTGCACCT+GGG | + | chr5.1:53870668-53870687 | MS.gene43742:intron | 50.0% | |
| AGAACAGTGACAACAGTGCC+AGG | + | chr5.1:53868977-53868996 | MS.gene43742:CDS | 50.0% | |
| AGTGCAAGAGCCTTTCTGCT+GGG | - | chr5.1:53870172-53870191 | None:intergenic | 50.0% | |
| ATAGAATTCTCGGGGCAAGG+AGG | - | chr5.1:53871268-53871287 | None:intergenic | 50.0% | |
| CACATGCTTCACCCGTAGAA+GGG | - | chr5.1:53868927-53868946 | None:intergenic | 50.0% | |
| CAGCATTGCTGCATTCTGGT+TGG | - | chr5.1:53871081-53871100 | None:intergenic | 50.0% | |
| CCAGACACACTCTTGCTTTC+TGG | - | chr5.1:53869009-53869028 | None:intergenic | 50.0% | |
| GAACAGTGACAACAGTGCCA+GGG | + | chr5.1:53868978-53868997 | MS.gene43742:CDS | 50.0% | |
| GACACACTCTTGCTTTCTGG+AGG | - | chr5.1:53869006-53869025 | None:intergenic | 50.0% | |
| GATATGCTTCTCGGAAGGCA+AGG | + | chr5.1:53872512-53872531 | MS.gene43742:CDS | 50.0% | |
| GATGCAGCATTGCTGCATTC+TGG | - | chr5.1:53871085-53871104 | None:intergenic | 50.0% | |
| GCTCACTATCACCAGAGATC+GGG | - | chr5.1:53870775-53870794 | None:intergenic | 50.0% | |
| GCTGGTGACTATCAAGAGTG+TGG | + | chr5.1:53871202-53871221 | MS.gene43742:CDS | 50.0% | |
| GGCTATAGCACTTAGCGTAG+TGG | + | chr5.1:53870588-53870607 | MS.gene43742:intron | 50.0% | |
| GTCAATGCATGTAAGCCGCA+AGG | - | chr5.1:53870023-53870042 | None:intergenic | 50.0% | |
| GTGCACAGCTCTATAGGTAC+TGG | - | chr5.1:53870666-53870685 | None:intergenic | 50.0% | |
| TACCTATAGAGCTGTGCACC+TGG | + | chr5.1:53870667-53870686 | MS.gene43742:intron | 50.0% | |
| TAGTGCAAGAGCCTTTCTGC+TGG | - | chr5.1:53870173-53870192 | None:intergenic | 50.0% | |
| TCACATGCTTCACCCGTAGA+AGG | - | chr5.1:53868928-53868947 | None:intergenic | 50.0% | |
| TTGCTTCTCTGGCTGTCCTT+CGG | + | chr5.1:53868861-53868880 | MS.gene43742:CDS | 50.0% | |
| ! | CCAGAAAGCAAGAGTGTGTC+TGG | + | chr5.1:53869006-53869025 | MS.gene43742:CDS | 50.0% |
| ! | TGCAGCTTGATGACAGTCGA+TGG | + | chr5.1:53869967-53869986 | MS.gene43742:intron | 50.0% |
| ! | TGTGTCTGGTTCAGCTCAAG+TGG | + | chr5.1:53869020-53869039 | MS.gene43742:CDS | 50.0% |
| ! | TTTCCCCAGCTTTGACGAAC+CGG | - | chr5.1:53872564-53872583 | None:intergenic | 50.0% |
| CGGGCGCCTGGTTCAAAATA+CGG | - | chr5.1:53869113-53869132 | None:intergenic | 55.0% | |
| GAAGAAAGCTCGGAAGCCGA+AGG | - | chr5.1:53868880-53868899 | None:intergenic | 55.0% | |
| GGCAGTACACCAAAGACCTC+TGG | - | chr5.1:53868621-53868640 | None:intergenic | 55.0% | |
| GGCGCCTGGTTCAAAATACG+GGG | - | chr5.1:53869111-53869130 | None:intergenic | 55.0% | |
| GGGCGCCTGGTTCAAAATAC+GGG | - | chr5.1:53869112-53869131 | None:intergenic | 55.0% | |
| TTGCGGAGACCAGAGGTCTT+TGG | + | chr5.1:53868609-53868628 | MS.gene43742:CDS | 55.0% | |
| ! | CTTGCTTTCTGGAGGAACCC+TGG | - | chr5.1:53868998-53869017 | None:intergenic | 55.0% |
| ! | GCGATTTTTGCGGAGACCAG+AGG | + | chr5.1:53868602-53868621 | MS.gene43742:CDS | 55.0% |
| !! | AAAGGCCGGTTCGTCAAAGC+TGG | + | chr5.1:53872556-53872575 | MS.gene43742:CDS | 55.0% |
| !! | AAGGCCGGTTCGTCAAAGCT+GGG | + | chr5.1:53872557-53872576 | MS.gene43742:CDS | 55.0% |
| !! | CGTATTTTGAACCAGGCGCC+CGG | + | chr5.1:53869111-53869130 | MS.gene43742:CDS | 55.0% |
| CGGGGTTTGGCACTTGACTC+AGG | - | chr5.1:53869093-53869112 | None:intergenic | 60.0% | |
| GCCCAGGTGCACAGCTCTAT+AGG | - | chr5.1:53870672-53870691 | None:intergenic | 60.0% | |
| !! | AGGCCGGTTCGTCAAAGCTG+GGG | + | chr5.1:53872558-53872577 | MS.gene43742:CDS | 60.0% |
| !! | TCAAGGCGCTGTTGCTGCTG+AGG | + | chr5.1:53870372-53870391 | MS.gene43742:CDS | 60.0% |
| CATTGGAAGATCCGGGCGCC+TGG | - | chr5.1:53869125-53869144 | None:intergenic | 65.0% | |
| TCGGGGCAAGGAGGACACCA+GGG | - | chr5.1:53871259-53871278 | None:intergenic | 65.0% | |
| TTCTCACAGGGGAGCCTCCC+TGG | + | chr5.1:53871239-53871258 | MS.gene43742:CDS | 65.0% | |
| CTCGGGGCAAGGAGGACACC+AGG | - | chr5.1:53871260-53871279 | None:intergenic | 70.0% | |
| GGGCAAGGAGGACACCAGGG+AGG | - | chr5.1:53871256-53871275 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 53868589 | 53872624 | 53868589 | ID=MS.gene43742 |
| chr5.1 | mRNA | 53868589 | 53872624 | 53868589 | ID=MS.gene43742.t1;Parent=MS.gene43742 |
| chr5.1 | exon | 53868589 | 53869158 | 53868589 | ID=MS.gene43742.t1.exon1;Parent=MS.gene43742.t1 |
| chr5.1 | CDS | 53868589 | 53869158 | 53868589 | ID=cds.MS.gene43742.t1;Parent=MS.gene43742.t1 |
| chr5.1 | exon | 53870160 | 53870393 | 53870160 | ID=MS.gene43742.t1.exon2;Parent=MS.gene43742.t1 |
| chr5.1 | CDS | 53870160 | 53870393 | 53870160 | ID=cds.MS.gene43742.t1;Parent=MS.gene43742.t1 |
| chr5.1 | exon | 53871049 | 53871347 | 53871049 | ID=MS.gene43742.t1.exon3;Parent=MS.gene43742.t1 |
| chr5.1 | CDS | 53871049 | 53871347 | 53871049 | ID=cds.MS.gene43742.t1;Parent=MS.gene43742.t1 |
| chr5.1 | exon | 53872495 | 53872624 | 53872495 | ID=MS.gene43742.t1.exon4;Parent=MS.gene43742.t1 |
| chr5.1 | CDS | 53872495 | 53872624 | 53872495 | ID=cds.MS.gene43742.t1;Parent=MS.gene43742.t1 |
| Gene Sequence |
| Protein sequence |
