AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010157

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010157.t1 MTR_5g065080 97.541 366 7 1 1 366 1 364 0.0 723
MS.gene010157.t1 MTR_3g099740 63.215 367 125 4 7 365 4 368 5.36e-168 473
MS.gene010157.t1 MTR_3g099750 61.035 367 133 4 7 365 3 367 1.83e-161 457
MS.gene010157.t1 MTR_2g437590 35.734 361 206 7 7 358 60 403 1.15e-69 224
MS.gene010157.t1 MTR_2g015470 33.134 335 216 2 22 356 44 370 1.08e-58 195
MS.gene010157.t1 MTR_4g098900 33.828 337 197 5 27 360 42 355 2.75e-57 192
MS.gene010157.t1 MTR_3g058660 33.060 366 230 5 6 366 1 356 1.20e-56 189
MS.gene010157.t1 MTR_2g437580 33.803 355 212 8 7 355 40 377 2.57e-52 178
MS.gene010157.t1 MTR_8g024620 32.344 337 201 3 20 350 42 357 3.34e-52 177
MS.gene010157.t1 MTR_8g024620 32.344 337 201 3 20 350 53 368 4.72e-52 177
MS.gene010157.t1 MTR_8g024620 32.344 337 201 3 20 350 54 369 4.84e-52 177
MS.gene010157.t1 MTR_7g080750 30.812 357 220 6 1 355 9 340 5.99e-47 163
MS.gene010157.t1 MTR_6g082540 32.653 147 99 0 198 344 5 151 6.84e-23 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010157.t1 AT2G33750 58.430 344 136 2 17 360 3 339 4.85e-141 404
MS.gene010157.t1 AT1G28220 55.490 337 143 2 17 353 1 330 1.16e-137 396
MS.gene010157.t1 AT2G33750 56.620 355 136 3 17 360 3 350 3.43e-137 395
MS.gene010157.t1 AT1G28230 58.621 348 138 3 17 359 1 347 8.36e-136 391
MS.gene010157.t1 AT4G18220 35.404 322 194 5 41 361 66 374 3.18e-57 191
MS.gene010157.t1 AT4G18210 32.687 361 222 5 7 361 31 376 1.11e-52 179
MS.gene010157.t1 AT4G18205 34.891 321 192 4 41 357 61 368 2.14e-51 176
MS.gene010157.t1 AT4G18197 32.722 327 203 4 41 363 64 377 3.76e-46 162
MS.gene010157.t1 AT1G30840 33.529 340 208 6 7 342 11 336 4.56e-45 159
MS.gene010157.t1 AT1G30840 33.529 340 208 6 7 342 11 336 4.56e-45 159
MS.gene010157.t1 AT1G44750 32.464 345 219 5 13 355 24 356 6.36e-44 155
MS.gene010157.t1 AT1G44750 32.464 345 219 5 13 355 24 356 6.36e-44 155
MS.gene010157.t1 AT1G44750 32.641 337 214 4 20 355 44 368 6.91e-44 156
MS.gene010157.t1 AT4G18195 32.177 317 202 3 41 355 67 372 8.74e-44 156
MS.gene010157.t1 AT1G44750 35.600 250 159 2 107 355 44 292 2.71e-43 152
MS.gene010157.t1 AT1G44750 35.600 250 159 2 107 355 44 292 2.71e-43 152
MS.gene010157.t1 AT1G44750 35.600 250 159 2 107 355 44 292 2.71e-43 152
MS.gene010157.t1 AT1G44750 35.600 250 159 2 107 355 44 292 2.71e-43 152
MS.gene010157.t1 AT1G44750 35.600 250 159 2 107 355 44 292 2.71e-43 152
MS.gene010157.t1 AT4G18190 32.055 365 229 6 3 361 20 371 6.08e-42 151
MS.gene010157.t1 AT2G24220 33.631 336 207 4 2 337 21 340 1.48e-41 149
MS.gene010157.t1 AT2G24220 33.631 336 207 4 2 337 39 358 1.91e-41 149
MS.gene010157.t1 AT4G08700 27.322 366 238 7 5 357 9 359 1.71e-37 138
MS.gene010157.t1 AT5G41160 27.049 366 242 7 5 357 9 362 5.32e-36 134
MS.gene010157.t1 AT1G19770 27.097 310 208 5 51 349 88 390 2.60e-24 103
MS.gene010157.t1 AT1G57943 28.399 331 204 9 49 365 84 395 7.73e-24 102
MS.gene010157.t1 AT1G57943 28.399 331 204 9 49 365 85 396 8.44e-24 101
MS.gene010157.t1 AT1G57980 27.576 330 207 8 49 365 82 392 6.82e-21 93.6
MS.gene010157.t1 AT1G57990 25.688 327 217 8 49 365 78 388 7.35e-20 90.5
MS.gene010157.t1 AT1G47603 25.600 375 231 11 7 350 24 381 1.71e-18 86.7
MS.gene010157.t1 AT1G09860 27.795 331 200 13 49 357 69 382 3.32e-15 76.6
MS.gene010157.t1 AT1G75470 20.902 244 179 4 124 355 144 385 1.26e-12 68.9

Find 71 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGGTGCTCTCACTTT+GGG 0.109096 5.2:+54964874 MS.gene010157:CDS
GCTAAGGGAATGAGAATTAT+TGG 0.211382 5.2:-54963018 None:intergenic
TGTGCCTCTTCATTGCTATC+TGG 0.276545 5.2:+54964767 MS.gene010157:CDS
GACCCTTGGGAGTGTTGTTT+TGG 0.297124 5.2:+54963326 MS.gene010157:CDS
AACAGCTAAGATTTCAGTTA+TGG 0.309424 5.2:-54964813 None:intergenic
TTGGCTTCTGCTGCTTTGTA+TGG 0.317318 5.2:+54963423 MS.gene010157:CDS
TTGCTTTGGTGCTCTCACTT+TGG 0.319968 5.2:+54964873 MS.gene010157:CDS
GGATTGAGTTTAGTATTAGA+AGG 0.332698 5.2:-54962891 None:intergenic
TATTACTTATTCTCTTGTTA+TGG 0.358957 5.2:+54963494 MS.gene010157:CDS
TCTACTAAGGATTATGTGAT+TGG 0.363277 5.2:+54963387 MS.gene010157:CDS
AGCAGAGAAAGGGGTTGCTT+TGG 0.380450 5.2:+54964859 MS.gene010157:CDS
TTATTATTGTTGTTGCCGTT+AGG 0.386452 5.2:-54963084 None:intergenic
ACAGCTAAGATTTCAGTTAT+GGG 0.401537 5.2:-54964812 None:intergenic
AACGGTAACGGTAACGGTTG+TGG 0.403687 5.2:-54963053 None:intergenic
AGAAATTTCAAGCAGAGAAA+GGG 0.404504 5.2:+54964849 MS.gene010157:CDS
TATTATTGTTGTTGCCGTTA+GGG 0.409224 5.2:-54963083 None:intergenic
ACCACCTTTGTTTATCGCTT+CGG 0.421218 5.2:+54963125 MS.gene010157:CDS
GAGAAATTTCAAGCAGAGAA+AGG 0.424086 5.2:+54964848 MS.gene010157:CDS
TGAAGTATAGACGCATTACT+AGG 0.425291 5.2:-54962942 None:intergenic
CTAAGGGAATGAGAATTATT+GGG 0.433473 5.2:-54963017 None:intergenic
TTGAAATCCCTTGCTTCCCT+TGG 0.436924 5.2:-54964656 None:intergenic
GAAGCAAGGGATTTCAAGCT+TGG 0.447995 5.2:+54964662 MS.gene010157:CDS
GCCATACACGTTTGCCGCCA+TGG 0.460981 5.2:-54962966 None:intergenic
AAGCAAGGGATTTCAAGCTT+GGG 0.461079 5.2:+54964663 MS.gene010157:CDS
TCCATGGCGGCAAACGTGTA+TGG 0.467259 5.2:+54962965 MS.gene010157:CDS
ACTTGTTGGTGAGTCTACTA+AGG 0.477683 5.2:+54963374 MS.gene010157:CDS
GTGATTGAATGAAGACTTTG+AGG 0.480812 5.2:-54964965 None:intergenic
TTGGGAAGGCAGATGTTTCA+AGG 0.487413 5.2:-54962999 None:intergenic
CGATTTCGCAGGTGATTCCA+AGG 0.488583 5.2:+54964639 MS.gene010157:intron
GGGTCCACCACATGTTCCTA+TGG 0.491438 5.2:-54962920 None:intergenic
GATGGTGGAGATAGACTTGT+TGG 0.502081 5.2:+54963360 MS.gene010157:CDS
TTTATCGCTTCGGCAGTCAT+CGG 0.508139 5.2:+54963135 MS.gene010157:CDS
CACATGTTCCTATGGCTAAG+AGG 0.511689 5.2:-54962912 None:intergenic
TTTCGTAACGGTAACGGTAA+CGG 0.513127 5.2:-54963059 None:intergenic
GTAGAGGTAGTCGTCTAAAC+CGG 0.524198 5.2:-54963166 None:intergenic
TTATAAACCAACTCCAACAA+CGG 0.529943 5.2:-54963456 None:intergenic
GAAGTATAGACGCATTACTA+GGG 0.537685 5.2:-54962941 None:intergenic
GTTAATTATTCTTTCCACCA+TGG 0.544404 5.2:-54962830 None:intergenic
GAAATTTCAAGCAGAGAAAG+GGG 0.546511 5.2:+54964850 MS.gene010157:CDS
GCTTTGGTGCTCTCACTTTG+GGG 0.547915 5.2:+54964875 MS.gene010157:CDS
ACGGTTGTGGATGTGAGAAA+TGG 0.560217 5.2:-54963040 None:intergenic
AGGTGATTCCAAGGGAAGCA+AGG 0.563127 5.2:+54964648 MS.gene010157:intron
CGGTAGACGCTTTATGCCGC+AGG 0.567407 5.2:-54963190 None:intergenic
CTGCGGCATAAAGCGTCTAC+CGG 0.571271 5.2:+54963191 MS.gene010157:CDS
TACCGTTACGAAAACCCTAA+CGG 0.577948 5.2:+54963069 MS.gene010157:CDS
GCAGTCATCGGAGTTCTCAC+CGG 0.580044 5.2:+54963147 MS.gene010157:CDS
AGCAAGGGATTTCAAGCTTG+GGG 0.584822 5.2:+54964664 MS.gene010157:CDS
AGTACTATGTTGTGCTAGTG+TGG 0.588131 5.2:+54964693 MS.gene010157:CDS
CTCTTAGCCATAGGAACATG+TGG 0.591598 5.2:+54962913 MS.gene010157:CDS
AACTCAATCCTCTTAGCCAT+AGG 0.604730 5.2:+54962904 MS.gene010157:CDS
ATGCGTCTATACTTCATCCA+TGG 0.605124 5.2:+54962949 MS.gene010157:CDS
AATACCAGATAGCAATGAAG+AGG 0.606353 5.2:-54964771 None:intergenic
GTGCCAAAACAACACTCCCA+AGG 0.608152 5.2:-54963329 None:intergenic
TGCCAAAACAACACTCCCAA+GGG 0.608894 5.2:-54963328 None:intergenic
GTGGATGTGAGAAATGGCTA+AGG 0.612500 5.2:-54963034 None:intergenic
GGTGATTCCAAGGGAAGCAA+GGG 0.617537 5.2:+54964649 MS.gene010157:intron
CGCGGTGAAAGCTAAGTGTG+AGG 0.632940 5.2:-54963238 None:intergenic
GGGAATGAGAATTATTGGGA+AGG 0.638688 5.2:-54963013 None:intergenic
GCTTTATGCCGCAGGCGTAG+AGG 0.652914 5.2:-54963182 None:intergenic
TTGGCACTGAATTCTGATGG+TGG 0.661099 5.2:+54963345 MS.gene010157:CDS
GATTTCGCAGGTGATTCCAA+GGG 0.661936 5.2:+54964640 MS.gene010157:intron
GACGACTACCTCTACGCCTG+CGG 0.669034 5.2:+54963174 MS.gene010157:CDS
TGGATGTGAGAAATGGCTAA+GGG 0.669361 5.2:-54963033 None:intergenic
AAGTATAGACGCATTACTAG+GGG 0.673904 5.2:-54962940 None:intergenic
TTAGCCATAGGAACATGTGG+TGG 0.677866 5.2:+54962916 MS.gene010157:CDS
ACTGCCGAAGCGATAAACAA+AGG 0.695167 5.2:-54963129 None:intergenic
ATTAACGAAGAAGTTGACAC+CGG 0.698512 5.2:-54963210 None:intergenic
GCCGAAGCGATAAACAAAGG+TGG 0.698965 5.2:-54963126 None:intergenic
CGTCTATACTTCATCCATGG+CGG 0.706082 5.2:+54962952 MS.gene010157:CDS
TAGTGTGGAGTGCTATAATG+TGG 0.749239 5.2:+54964708 MS.gene010157:CDS
CTCACACTTAGCTTTCACCG+CGG 0.755684 5.2:+54963239 MS.gene010157:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAGAATTAGAATA+AGG + chr5.2:54964058-54964077 MS.gene010157:intron 10.0%
!! ATTAATAATTCAATATCAAT+GGG - chr5.2:54964145-54964164 None:intergenic 10.0%
!!! ATTCTAATTCTATTTTATTT+TGG - chr5.2:54964057-54964076 None:intergenic 10.0%
!!! TTTCTTTTAATTCTTTATTT+AGG + chr5.2:54964295-54964314 MS.gene010157:intron 10.0%
!! AAAAATGAAAAATAGAGAAA+TGG + chr5.2:54964937-54964956 MS.gene010157:CDS 15.0%
!! CATTAATAATTCAATATCAA+TGG - chr5.2:54964146-54964165 None:intergenic 15.0%
!! GTAATAAATAATTTCTCTAT+TGG - chr5.2:54964600-54964619 None:intergenic 15.0%
!! TTAGATTTATTTATTGTATG+TGG - chr5.2:54963853-54963872 None:intergenic 15.0%
!!! ATTTTTTTTTAGATAACAAG+AGG + chr5.2:54964518-54964537 MS.gene010157:intron 15.0%
!!! TAAATTTCTTTTGATTCTAT+TGG + chr5.2:54964321-54964340 MS.gene010157:intron 15.0%
!!! TCTAAAACATTTTTTTCTAT+TGG + chr5.2:54964416-54964435 MS.gene010157:intron 15.0%
!!! TTTTTGTTTATAACAATGAT+TGG - chr5.2:54963779-54963798 None:intergenic 15.0%
!!! TTTTTTTTTAGATAACAAGA+GGG + chr5.2:54964519-54964538 MS.gene010157:intron 15.0%
!! AAACTTAAAACCTAAATTGT+GGG - chr5.2:54964278-54964297 None:intergenic 20.0%
!! AATAAAAAGAGAGCAATATT+CGG - chr5.2:54964102-54964121 None:intergenic 20.0%
!! ACCAAATAGAAAAATAGAAT+TGG - chr5.2:54964356-54964375 None:intergenic 20.0%
!! ATAGTAGAATTAGAATATTG+TGG + chr5.2:54964029-54964048 MS.gene010157:intron 20.0%
!! CTAAGAATAGTTATTACATT+TGG + chr5.2:54964201-54964220 MS.gene010157:intron 20.0%
!! TATTACTTATTCTCTTGTTA+TGG + chr5.2:54963494-54963513 MS.gene010157:CDS 20.0%
!!! ACCAATTCTATTTTTCTATT+TGG + chr5.2:54964352-54964371 MS.gene010157:intron 20.0%
!!! TTTTTATTTCTCAAAACTTG+TGG + chr5.2:54964114-54964133 MS.gene010157:intron 20.0%
! ATAAAAAGAGAGCAATATTC+GGG - chr5.2:54964101-54964120 None:intergenic 25.0%
! ATCCTTTACGTAAATTGAAT+TGG - chr5.2:54964241-54964260 None:intergenic 25.0%
! GAAACTTAAAACCTAAATTG+TGG - chr5.2:54964279-54964298 None:intergenic 25.0%
! TGTTTATAACAATGATTGGA+GGG - chr5.2:54963775-54963794 None:intergenic 25.0%
! TTCCAATTCAATTTACGTAA+AGG + chr5.2:54964236-54964255 MS.gene010157:intron 25.0%
! TTGTTTATAACAATGATTGG+AGG - chr5.2:54963776-54963795 None:intergenic 25.0%
!! GATCATAGACAATGATTTTA+AGG + chr5.2:54963569-54963588 MS.gene010157:CDS 25.0%
!!! GATTGGTTTTGTTATGATAT+TGG + chr5.2:54963404-54963423 MS.gene010157:CDS 25.0%
AACAGCTAAGATTTCAGTTA+TGG - chr5.2:54964816-54964835 None:intergenic 30.0%
AATTGTGAGTGTACAAAGTA+TGG - chr5.2:54963637-54963656 None:intergenic 30.0%
ACAGCTAAGATTTCAGTTAT+GGG - chr5.2:54964815-54964834 None:intergenic 30.0%
AGAAATTTCAAGCAGAGAAA+GGG + chr5.2:54964849-54964868 MS.gene010157:CDS 30.0%
CTAAGGGAATGAGAATTATT+GGG - chr5.2:54963020-54963039 None:intergenic 30.0%
CTATTCTTAGATTCAATACG+TGG - chr5.2:54964191-54964210 None:intergenic 30.0%
GGATTGAGTTTAGTATTAGA+AGG - chr5.2:54962894-54962913 None:intergenic 30.0%
TAAAAAGAGAGCAATATTCG+GGG - chr5.2:54964100-54964119 None:intergenic 30.0%
TCTACTAAGGATTATGTGAT+TGG + chr5.2:54963387-54963406 MS.gene010157:CDS 30.0%
TTATAAACCAACTCCAACAA+CGG - chr5.2:54963459-54963478 None:intergenic 30.0%
! ATGTGGCAATTTTTCTTCTT+AGG + chr5.2:54964725-54964744 MS.gene010157:CDS 30.0%
! CATTCTAAAGACACACTTAA+TGG - chr5.2:54963956-54963975 None:intergenic 30.0%
! TATTATTGTTGTTGCCGTTA+GGG - chr5.2:54963086-54963105 None:intergenic 30.0%
! TTATTATTGTTGTTGCCGTT+AGG - chr5.2:54963087-54963106 None:intergenic 30.0%
AAAAAGAGAGCAATATTCGG+GGG - chr5.2:54964099-54964118 None:intergenic 35.0%
AAGTATAGACGCATTACTAG+GGG - chr5.2:54962943-54962962 None:intergenic 35.0%
AATACCAGATAGCAATGAAG+AGG - chr5.2:54964774-54964793 None:intergenic 35.0%
ATTAACGAAGAAGTTGACAC+CGG - chr5.2:54963213-54963232 None:intergenic 35.0%
CAATCTTAGTCCCACAATTT+AGG + chr5.2:54964265-54964284 MS.gene010157:intron 35.0%
CTAAATTGTGGGACTAAGAT+TGG - chr5.2:54964267-54964286 None:intergenic 35.0%
GAAATTTCAAGCAGAGAAAG+GGG + chr5.2:54964850-54964869 MS.gene010157:CDS 35.0%
GAAGTATAGACGCATTACTA+GGG - chr5.2:54962944-54962963 None:intergenic 35.0%
GAGAAATTTCAAGCAGAGAA+AGG + chr5.2:54964848-54964867 MS.gene010157:CDS 35.0%
GCTAAGGGAATGAGAATTAT+TGG - chr5.2:54963021-54963040 None:intergenic 35.0%
GTGATTGAATGAAGACTTTG+AGG - chr5.2:54964968-54964987 None:intergenic 35.0%
TGAAGTATAGACGCATTACT+AGG - chr5.2:54962945-54962964 None:intergenic 35.0%
TGAGACACAGTACATTTGTT+TGG - chr5.2:54963926-54963945 None:intergenic 35.0%
! TTTTTCTTCTTAGGAGCGAT+TGG + chr5.2:54964734-54964753 MS.gene010157:CDS 35.0%
!! CTATTGTTTTGTTGACCCTT+GGG + chr5.2:54963313-54963332 MS.gene010157:CDS 35.0%
!! TCTATTGTTTTGTTGACCCT+TGG + chr5.2:54963312-54963331 MS.gene010157:CDS 35.0%
!!! CTACTTTGTTTTGCGTTGTT+GGG + chr5.2:54963544-54963563 MS.gene010157:CDS 35.0%
!!! TGGATTTGTTTTACCGTTGT+TGG + chr5.2:54963443-54963462 MS.gene010157:CDS 35.0%
AAAAGAGAGCAATATTCGGG+GGG - chr5.2:54964098-54964117 None:intergenic 40.0%
AACTACCCCTTAACAAAACG+CGG + chr5.2:54964564-54964583 MS.gene010157:intron 40.0%
AACTCAATCCTCTTAGCCAT+AGG + chr5.2:54962904-54962923 MS.gene010157:CDS 40.0%
AAGAAAAAACGCGAAAACCG+CGG - chr5.2:54963259-54963278 None:intergenic 40.0%
AAGCAAGGGATTTCAAGCTT+GGG + chr5.2:54964663-54964682 MS.gene010157:CDS 40.0%
AGTACTATGTTGTGCTAGTG+TGG + chr5.2:54964693-54964712 MS.gene010157:CDS 40.0%
ATGCGTCTATACTTCATCCA+TGG + chr5.2:54962949-54962968 MS.gene010157:CDS 40.0%
GGGAATGAGAATTATTGGGA+AGG - chr5.2:54963016-54963035 None:intergenic 40.0%
TACCGTTACGAAAACCCTAA+CGG + chr5.2:54963069-54963088 MS.gene010157:CDS 40.0%
TGGATGTGAGAAATGGCTAA+GGG - chr5.2:54963036-54963055 None:intergenic 40.0%
! AATGAGTATTGCGATTTCGC+AGG + chr5.2:54964628-54964647 MS.gene010157:intron 40.0%
! ACCACCTTTGTTTATCGCTT+CGG + chr5.2:54963125-54963144 MS.gene010157:CDS 40.0%
! ACTTGTTGGTGAGTCTACTA+AGG + chr5.2:54963374-54963393 MS.gene010157:CDS 40.0%
! TAGGGTTTTCGTAACGGTAA+CGG - chr5.2:54963068-54963087 None:intergenic 40.0%
! TAGTGTGGAGTGCTATAATG+TGG + chr5.2:54964708-54964727 MS.gene010157:CDS 40.0%
! TGTTTTACCGTTGTTGGAGT+TGG + chr5.2:54963449-54963468 MS.gene010157:CDS 40.0%
! TTTCGTAACGGTAACGGTAA+CGG - chr5.2:54963062-54963081 None:intergenic 40.0%
!! GTTTTGGCACTGAATTCTGA+TGG + chr5.2:54963342-54963361 MS.gene010157:CDS 40.0%
!!! GCTACTTTGTTTTGCGTTGT+TGG + chr5.2:54963543-54963562 MS.gene010157:CDS 40.0%
!!! GGGTAGTTCTCTCTTTTTTC+CGG - chr5.2:54964552-54964571 None:intergenic 40.0%
!!! GGTAGTTCTCTCTTTTTTCC+GGG - chr5.2:54964551-54964570 None:intergenic 40.0%
ACGGTTGTGGATGTGAGAAA+TGG - chr5.2:54963043-54963062 None:intergenic 45.0%
ACTGCCGAAGCGATAAACAA+AGG - chr5.2:54963132-54963151 None:intergenic 45.0%
AGCAAGGGATTTCAAGCTTG+GGG + chr5.2:54964664-54964683 MS.gene010157:CDS 45.0%
CACATGTTCCTATGGCTAAG+AGG - chr5.2:54962915-54962934 None:intergenic 45.0%
CGTCTATACTTCATCCATGG+CGG + chr5.2:54962952-54962971 MS.gene010157:CDS 45.0%
CTCTTAGCCATAGGAACATG+TGG + chr5.2:54962913-54962932 MS.gene010157:CDS 45.0%
GAAGCAAGGGATTTCAAGCT+TGG + chr5.2:54964662-54964681 MS.gene010157:CDS 45.0%
GATTTCGCAGGTGATTCCAA+GGG + chr5.2:54964640-54964659 MS.gene010157:intron 45.0%
GTAGAGGTAGTCGTCTAAAC+CGG - chr5.2:54963169-54963188 None:intergenic 45.0%
GTGGATGTGAGAAATGGCTA+AGG - chr5.2:54963037-54963056 None:intergenic 45.0%
TGCCAAAACAACACTCCCAA+GGG - chr5.2:54963331-54963350 None:intergenic 45.0%
TGTGCCTCTTCATTGCTATC+TGG + chr5.2:54964767-54964786 MS.gene010157:CDS 45.0%
TTAGCCATAGGAACATGTGG+TGG + chr5.2:54962916-54962935 MS.gene010157:CDS 45.0%
TTGAAATCCCTTGCTTCCCT+TGG - chr5.2:54964659-54964678 None:intergenic 45.0%
TTGGGAAGGCAGATGTTTCA+AGG - chr5.2:54963002-54963021 None:intergenic 45.0%
TTTATCGCTTCGGCAGTCAT+CGG + chr5.2:54963135-54963154 MS.gene010157:CDS 45.0%
! TGCCGTTAGGGTTTTCGTAA+CGG - chr5.2:54963074-54963093 None:intergenic 45.0%
! TTGGCACTGAATTCTGATGG+TGG + chr5.2:54963345-54963364 MS.gene010157:CDS 45.0%
!! GATGGTGGAGATAGACTTGT+TGG + chr5.2:54963360-54963379 MS.gene010157:CDS 45.0%
!! TCGACTCCGCGTTTTGTTAA+GGG - chr5.2:54964573-54964592 None:intergenic 45.0%
!! TGCTTTGGTGCTCTCACTTT+GGG + chr5.2:54964874-54964893 MS.gene010157:CDS 45.0%
!! TTCGACTCCGCGTTTTGTTA+AGG - chr5.2:54964574-54964593 None:intergenic 45.0%
!! TTGCTTTGGTGCTCTCACTT+TGG + chr5.2:54964873-54964892 MS.gene010157:CDS 45.0%
!! TTGGCTTCTGCTGCTTTGTA+TGG + chr5.2:54963423-54963442 MS.gene010157:CDS 45.0%
!!! TCTCTCTTTTTTCCGGGCTA+GGG - chr5.2:54964545-54964564 None:intergenic 45.0%
!!! TTCTCTCTTTTTTCCGGGCT+AGG - chr5.2:54964546-54964565 None:intergenic 45.0%
!! ATGTTTAATTAATATTTAAT+TGG - chr5.2:54964451-54964470 None:intergenic 5.0%
AGCAGAGAAAGGGGTTGCTT+TGG + chr5.2:54964859-54964878 MS.gene010157:CDS 50.0%
AGGTGATTCCAAGGGAAGCA+AGG + chr5.2:54964648-54964667 MS.gene010157:intron 50.0%
CGATTTCGCAGGTGATTCCA+AGG + chr5.2:54964639-54964658 MS.gene010157:intron 50.0%
GCCGAAGCGATAAACAAAGG+TGG - chr5.2:54963129-54963148 None:intergenic 50.0%
GGTGATTCCAAGGGAAGCAA+GGG + chr5.2:54964649-54964668 MS.gene010157:intron 50.0%
GTGCCAAAACAACACTCCCA+AGG - chr5.2:54963332-54963351 None:intergenic 50.0%
! AACGGTAACGGTAACGGTTG+TGG - chr5.2:54963056-54963075 None:intergenic 50.0%
! CTCACACTTAGCTTTCACCG+CGG + chr5.2:54963239-54963258 MS.gene010157:CDS 50.0%
!! CGACTCCGCGTTTTGTTAAG+GGG - chr5.2:54964572-54964591 None:intergenic 50.0%
!! GCTTTGGTGCTCTCACTTTG+GGG + chr5.2:54964875-54964894 MS.gene010157:CDS 50.0%
!!! GACCCTTGGGAGTGTTGTTT+TGG + chr5.2:54963326-54963345 MS.gene010157:CDS 50.0%
ATAACAAGAGGGCCCTAGCC+CGG + chr5.2:54964530-54964549 MS.gene010157:intron 55.0%
CGCGGTGAAAGCTAAGTGTG+AGG - chr5.2:54963241-54963260 None:intergenic 55.0%
GCAGTCATCGGAGTTCTCAC+CGG + chr5.2:54963147-54963166 MS.gene010157:CDS 55.0%
GGGTCCACCACATGTTCCTA+TGG - chr5.2:54962923-54962942 None:intergenic 55.0%
TCCATGGCGGCAAACGTGTA+TGG + chr5.2:54962965-54962984 MS.gene010157:CDS 55.0%
! CTGCGGCATAAAGCGTCTAC+CGG + chr5.2:54963191-54963210 MS.gene010157:CDS 55.0%
CGGTAGACGCTTTATGCCGC+AGG - chr5.2:54963193-54963212 None:intergenic 60.0%
GACGACTACCTCTACGCCTG+CGG + chr5.2:54963174-54963193 MS.gene010157:CDS 60.0%
GCCATACACGTTTGCCGCCA+TGG - chr5.2:54962969-54962988 None:intergenic 60.0%
GCTTTATGCCGCAGGCGTAG+AGG - chr5.2:54963185-54963204 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 54962832 54964991 54962832 ID=MS.gene010157
chr5.2 mRNA 54962832 54964991 54962832 ID=MS.gene010157.t1;Parent=MS.gene010157
chr5.2 exon 54962832 54963590 54962832 ID=MS.gene010157.t1.exon1;Parent=MS.gene010157.t1
chr5.2 CDS 54962832 54963590 54962832 ID=cds.MS.gene010157.t1;Parent=MS.gene010157.t1
chr5.2 exon 54964650 54964991 54964650 ID=MS.gene010157.t1.exon2;Parent=MS.gene010157.t1
chr5.2 CDS 54964650 54964991 54964650 ID=cds.MS.gene010157.t1;Parent=MS.gene010157.t1
Gene Sequence

>MS.gene010157

ATGGTGGAAAGAATAATTAACGAAGAAGAAGAAAGCAAAAAAAGAAGCATGAAGAAACTCCTTCTAATACTAAACTCAATCCTCTTAGCCATAGGAACATGTGGTGGACCCCTAGTAATGCGTCTATACTTCATCCATGGCGGCAAACGTGTATGGCTCTCAAGCTTCCTTGAAACATCTGCCTTCCCAATAATTCTCATTCCCTTAGCCATTTCTCACATCCACAACCGTTACCGTTACCGTTACGAAAACCCTAACGGCAACAACAATAATAACAACTTTGTCTCAATGAAACCACCTTTGTTTATCGCTTCGGCAGTCATCGGAGTTCTCACCGGTTTAGACGACTACCTCTACGCCTGCGGCATAAAGCGTCTACCGGTGTCAACTTCTTCGTTAATTCAATCCTCACACTTAGCTTTCACCGCGGTTTTCGCGTTTTTTCTTGTGAAGCATAAGTTCACAGCTTATTCTGTTAACTCTATTGTTTTGTTGACCCTTGGGAGTGTTGTTTTGGCACTGAATTCTGATGGTGGAGATAGACTTGTTGGTGAGTCTACTAAGGATTATGTGATTGGTTTTGTTATGATATTGGCTTCTGCTGCTTTGTATGGATTTGTTTTACCGTTGTTGGAGTTGGTTTATAAAAAGAGTAAACAAGCTATTACTTATTCTCTTGTTATGGAGATTCAGCTTGTTATGTGCTTCTTTGCTACTTTGTTTTGCGTTGTTGGGATGATCATAGACAATGATTTTAAGGTAATCTCTCTTCTTTGTCTCACTCTATTGTTTTAACTTTTAACCATACTTTGTACACTCACAATTTTATCTTCTTTTTCTCACTCTATTGTTTTAACTTTTAACCATACTTTGTACACTCACAATTATATTTATTTTTCAAATTAATTGTACTTTTCATACTCATTATCAGACACATTCACCCTCCAATCATTGTTATAAACAAAAATCAACTTTTTAAATTCATTTAATCAATAATATATATGATCTTTATTATATACCACATACAATAAATAAATCTAAAATATTGATTTTTGCTTATGACATTGACATGAGAGTGTACACTTTAGTAACCAAACAAATGTACTGTGTCTCAATTTTTTCCATTAAGTGTGTCTTTAGAATGTGTGCTATTCTCATTATTATAGAATCTAAGAATGACTATTACTTTTGTTTTTAATAGTAGAATTAGAATATTGTGGTGCCAAAATAAAATAGAATTAGAATAAGGTGCTCTCTTCTTTTCCCCCCGAATATTGCTCTCTTTTTATTTCTCAAAACTTGTGGTATGTCCCATTGATATTGAATTATTAATGACTTTTTGTGAATTCAAAGATGCCACGTATTGAATCTAAGAATAGTTATTACATTTGGTTTTAATAGCAATTCCAATTCAATTTACGTAAAGGATTGTCCAATCTTAGTCCCACAATTTAGGTTTTAAGTTTCTTTTAATTCTTTATTTAGGTTTTAAATTTCTTTTGATTCTATTGGCTATGAACACCAATTCTATTTTTCTATTTGGTCAAAAAAAACTTGTAGTTATAAGACTTTATTGAATACGCATCTAAAACATTTTTTTCTATTGGCTATGAACACCAATTAAATATTAATTAAACATAAAAATAATAAATCATTTATTGCATTTTTTCAGAAATTATTTATTACATTTTTTTTTAGATAACAAGAGGGCCCTAGCCCGGAAAAAAGAGAGAACTACCCCTTAACAAAACGCGGAGTCGAAATACCAATAGAGAAATTATTTATTACATTTGATAAATGAGTATTGCGATTTCGCAGGTGATTCCAAGGGAAGCAAGGGATTTCAAGCTTGGGGAAACAAAGTACTATGTTGTGCTAGTGTGGAGTGCTATAATGTGGCAATTTTTCTTCTTAGGAGCGATTGGAGTTATCTTTTGTGCCTCTTCATTGCTATCTGGTATTATAATTGCTGCATTTCTTCCCATAACTGAAATCTTAGCTGTTATTGTCTACAAAGAGAAATTTCAAGCAGAGAAAGGGGTTGCTTTGGTGCTCTCACTTTGGGGCTTTGTGTCTTACTTTTATGATGAGATTAAAGAAGCAAAAAAAATGAAAAATAGAGAAATGGAACTGCCTCAAAGTCTTCATTCAATCACATGA
Protein sequence

>MS.gene010157.t1

MVERIINEEEESKKRSMKKLLLILNSILLAIGTCGGPLVMRLYFIHGGKRVWLSSFLETSAFPIILIPLAISHIHNRYRYRYENPNGNNNNNNFVSMKPPLFIASAVIGVLTGLDDYLYACGIKRLPVSTSSLIQSSHLAFTAVFAFFLVKHKFTAYSVNSIVLLTLGSVVLALNSDGGDRLVGESTKDYVIGFVMILASAALYGFVLPLLELVYKKSKQAITYSLVMEIQLVMCFFATLFCVVGMIIDNDFKVIPREARDFKLGETKYYVVLVWSAIMWQFFFLGAIGVIFCASSLLSGIIIAAFLPITEILAVIVYKEKFQAEKGVALVLSLWGFVSYFYDEIKEAKKMKNREMELPQSLHSIT