Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64133.t1 | XP_003615204.1 | 99.2 | 365 | 1 | 1 | 1 | 365 | 1 | 363 | 6.30E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64133.t1 | Q9FZ96 | 57.1 | 338 | 139 | 3 | 27 | 359 | 11 | 347 | 5.2e-100 | 365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64133.t1 | G7KBC7 | 99.2 | 365 | 1 | 1 | 1 | 365 | 1 | 363 | 4.6e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene64133 | 0.888946 | 3.76E-73 | -1.69E-46 |
| MS.gene050406 | MS.gene64133 | 0.800822 | 1.20E-48 | -1.69E-46 |
| MS.gene050426 | MS.gene64133 | -0.853596 | 2.15E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene64133 | 0.807808 | 4.22E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene64133 | 0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene64133 | 0.824491 | 7.84E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene64133 | 0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene64133 | 0.817672 | 2.92E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene64133 | 0.801096 | 1.06E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene64133 | 0.844251 | 8.49E-59 | -1.69E-46 |
| MS.gene052253 | MS.gene64133 | 0.804361 | 2.24E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene64133 | 0.857951 | 1.15E-62 | -1.69E-46 |
| MS.gene052469 | MS.gene64133 | 0.853347 | 2.54E-61 | -1.69E-46 |
| MS.gene052758 | MS.gene64133 | 0.818386 | 2.01E-52 | -1.69E-46 |
| MS.gene054349 | MS.gene64133 | 0.825487 | 4.56E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene64133 | 0.816853 | 4.46E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene64133 | 0.837468 | 5.11E-57 | -1.69E-46 |
| MS.gene05556 | MS.gene64133 | 0.81036 | 1.20E-50 | -1.69E-46 |
| MS.gene056233 | MS.gene64133 | 0.865147 | 7.29E-65 | -1.69E-46 |
| MS.gene056659 | MS.gene64133 | 0.851699 | 7.48E-61 | -1.69E-46 |
| MS.gene056723 | MS.gene64133 | 0.802292 | 6.01E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene64133 | -0.804967 | 1.68E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene64133 | 0.805686 | 1.18E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene64133 | 0.809583 | 1.76E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene64133 | 0.856681 | 2.73E-62 | -1.69E-46 |
| MS.gene057448 | MS.gene64133 | 0.825459 | 4.63E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene64133 | 0.817046 | 4.04E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene64133 | 0.823043 | 1.71E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene64133 | 0.80154 | 8.58E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene64133 | 0.804287 | 2.32E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene64133 | 0.816853 | 4.46E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene64133 | 0.823561 | 1.30E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene64133 | 0.828301 | 9.70E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene64133 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene64133 | 0.832917 | 7.19E-56 | -1.69E-46 |
| MS.gene060407 | MS.gene64133 | 0.812027 | 5.21E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene64133 | 0.811828 | 5.76E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene64133 | 0.806912 | 6.53E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene64133 | 0.837392 | 5.34E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64133 | MS.gene38573 | PPI |
| MS.gene64133 | MS.gene020463 | PPI |
| MS.gene64133 | MS.gene38616 | PPI |
| MS.gene013113 | MS.gene64133 | PPI |
| MS.gene64133 | MS.gene043890 | PPI |
| MS.gene64133 | MS.gene010157 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64133.t1 | MTR_5g065080 | 98.907 | 366 | 2 | 1 | 1 | 366 | 1 | 364 | 0.0 | 730 |
| MS.gene64133.t1 | MTR_3g099740 | 63.760 | 367 | 123 | 4 | 7 | 365 | 4 | 368 | 3.44e-169 | 476 |
| MS.gene64133.t1 | MTR_3g099750 | 61.096 | 365 | 132 | 4 | 9 | 365 | 5 | 367 | 1.40e-160 | 455 |
| MS.gene64133.t1 | MTR_2g437590 | 36.517 | 356 | 200 | 7 | 12 | 358 | 65 | 403 | 3.51e-70 | 226 |
| MS.gene64133.t1 | MTR_2g015470 | 33.134 | 335 | 216 | 2 | 22 | 356 | 44 | 370 | 1.45e-58 | 194 |
| MS.gene64133.t1 | MTR_4g098900 | 33.828 | 337 | 197 | 5 | 27 | 360 | 42 | 355 | 6.77e-57 | 191 |
| MS.gene64133.t1 | MTR_3g058660 | 33.333 | 360 | 225 | 5 | 12 | 366 | 7 | 356 | 2.52e-56 | 188 |
| MS.gene64133.t1 | MTR_2g437580 | 34.891 | 321 | 188 | 7 | 41 | 355 | 72 | 377 | 8.92e-53 | 179 |
| MS.gene64133.t1 | MTR_8g024620 | 32.344 | 337 | 201 | 3 | 20 | 350 | 42 | 357 | 4.18e-52 | 177 |
| MS.gene64133.t1 | MTR_8g024620 | 32.344 | 337 | 201 | 3 | 20 | 350 | 53 | 368 | 4.62e-52 | 177 |
| MS.gene64133.t1 | MTR_8g024620 | 32.344 | 337 | 201 | 3 | 20 | 350 | 54 | 369 | 4.74e-52 | 177 |
| MS.gene64133.t1 | MTR_7g080750 | 31.195 | 343 | 210 | 5 | 14 | 355 | 23 | 340 | 7.24e-47 | 163 |
| MS.gene64133.t1 | MTR_6g082540 | 32.653 | 147 | 99 | 0 | 198 | 344 | 5 | 151 | 1.06e-22 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64133.t1 | AT2G33750 | 58.721 | 344 | 135 | 2 | 17 | 360 | 3 | 339 | 3.86e-141 | 404 |
| MS.gene64133.t1 | AT1G28220 | 55.490 | 337 | 143 | 2 | 17 | 353 | 1 | 330 | 6.04e-138 | 397 |
| MS.gene64133.t1 | AT2G33750 | 56.901 | 355 | 135 | 3 | 17 | 360 | 3 | 350 | 1.76e-137 | 395 |
| MS.gene64133.t1 | AT1G28230 | 58.621 | 348 | 138 | 3 | 17 | 359 | 1 | 347 | 1.11e-135 | 391 |
| MS.gene64133.t1 | AT4G18220 | 35.404 | 322 | 194 | 5 | 41 | 361 | 66 | 374 | 1.97e-56 | 189 |
| MS.gene64133.t1 | AT4G18210 | 32.964 | 361 | 221 | 5 | 7 | 361 | 31 | 376 | 1.04e-52 | 179 |
| MS.gene64133.t1 | AT4G18205 | 34.891 | 321 | 192 | 4 | 41 | 357 | 61 | 368 | 2.64e-51 | 175 |
| MS.gene64133.t1 | AT4G18197 | 32.722 | 327 | 203 | 4 | 41 | 363 | 64 | 377 | 8.15e-46 | 161 |
| MS.gene64133.t1 | AT1G30840 | 33.923 | 339 | 206 | 6 | 8 | 342 | 12 | 336 | 2.51e-45 | 160 |
| MS.gene64133.t1 | AT1G30840 | 33.923 | 339 | 206 | 6 | 8 | 342 | 12 | 336 | 2.51e-45 | 160 |
| MS.gene64133.t1 | AT1G44750 | 32.231 | 363 | 224 | 6 | 3 | 355 | 6 | 356 | 2.87e-44 | 157 |
| MS.gene64133.t1 | AT1G44750 | 32.231 | 363 | 224 | 6 | 3 | 355 | 6 | 356 | 2.87e-44 | 157 |
| MS.gene64133.t1 | AT1G44750 | 32.231 | 363 | 224 | 6 | 3 | 355 | 18 | 368 | 4.55e-44 | 156 |
| MS.gene64133.t1 | AT4G18195 | 32.492 | 317 | 201 | 3 | 41 | 355 | 67 | 372 | 7.02e-44 | 156 |
| MS.gene64133.t1 | AT1G44750 | 35.600 | 250 | 159 | 2 | 107 | 355 | 44 | 292 | 5.15e-43 | 152 |
| MS.gene64133.t1 | AT1G44750 | 35.600 | 250 | 159 | 2 | 107 | 355 | 44 | 292 | 5.15e-43 | 152 |
| MS.gene64133.t1 | AT1G44750 | 35.600 | 250 | 159 | 2 | 107 | 355 | 44 | 292 | 5.15e-43 | 152 |
| MS.gene64133.t1 | AT1G44750 | 35.600 | 250 | 159 | 2 | 107 | 355 | 44 | 292 | 5.15e-43 | 152 |
| MS.gene64133.t1 | AT1G44750 | 35.600 | 250 | 159 | 2 | 107 | 355 | 44 | 292 | 5.15e-43 | 152 |
| MS.gene64133.t1 | AT4G18190 | 32.329 | 365 | 228 | 6 | 3 | 361 | 20 | 371 | 2.75e-42 | 152 |
| MS.gene64133.t1 | AT2G24220 | 33.535 | 331 | 205 | 3 | 7 | 337 | 25 | 340 | 4.48e-41 | 148 |
| MS.gene64133.t1 | AT2G24220 | 33.535 | 331 | 205 | 3 | 7 | 337 | 43 | 358 | 5.19e-41 | 148 |
| MS.gene64133.t1 | AT4G08700 | 27.246 | 345 | 235 | 4 | 14 | 357 | 30 | 359 | 2.22e-36 | 135 |
| MS.gene64133.t1 | AT5G41160 | 26.776 | 366 | 243 | 7 | 5 | 357 | 9 | 362 | 9.30e-35 | 131 |
| MS.gene64133.t1 | AT1G19770 | 27.419 | 310 | 207 | 5 | 51 | 349 | 88 | 390 | 1.39e-24 | 103 |
| MS.gene64133.t1 | AT1G57943 | 28.788 | 330 | 204 | 10 | 49 | 365 | 84 | 395 | 7.80e-24 | 102 |
| MS.gene64133.t1 | AT1G57943 | 28.788 | 330 | 204 | 10 | 49 | 365 | 85 | 396 | 9.87e-24 | 101 |
| MS.gene64133.t1 | AT1G57980 | 28.012 | 332 | 203 | 9 | 49 | 365 | 82 | 392 | 4.83e-21 | 94.0 |
| MS.gene64133.t1 | AT1G57990 | 26.140 | 329 | 213 | 9 | 49 | 365 | 78 | 388 | 4.92e-20 | 90.9 |
| MS.gene64133.t1 | AT1G47603 | 26.879 | 346 | 215 | 10 | 26 | 350 | 53 | 381 | 5.94e-18 | 84.7 |
| MS.gene64133.t1 | AT1G09860 | 27.928 | 333 | 197 | 14 | 49 | 357 | 69 | 382 | 8.62e-15 | 75.5 |
| MS.gene64133.t1 | AT1G75470 | 20.902 | 244 | 179 | 4 | 124 | 355 | 144 | 385 | 1.69e-12 | 68.6 |
Find 71 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTGGTGCTCTCACTTT+GGG | 0.109096 | 5.1:+49871317 | MS.gene64133:CDS |
| GTTAAGGGAATGAGAATTAT+TGG | 0.202075 | 5.1:-49869589 | None:intergenic |
| TGTTGTTGCCGTTAGGGTTT+TGG | 0.275520 | 5.1:-49869648 | None:intergenic |
| TGTGCCTCTTCATTGCTATC+TGG | 0.289354 | 5.1:+49871210 | MS.gene64133:CDS |
| GACCCTTGGGAGTGTTGTTT+TGG | 0.297124 | 5.1:+49869897 | MS.gene64133:CDS |
| AACAGCTAAGATTTCAGTTA+TGG | 0.309424 | 5.1:-49871256 | None:intergenic |
| TTGGCTTCTGCTGCTTTGTA+TGG | 0.317318 | 5.1:+49869994 | MS.gene64133:CDS |
| TATTACTTATTCTCTTGTTA+TGG | 0.319523 | 5.1:+49870065 | MS.gene64133:CDS |
| TTGCTTTGGTGCTCTCACTT+TGG | 0.319968 | 5.1:+49871316 | MS.gene64133:CDS |
| GGATTGAGTTTAGTATTAGA+AGG | 0.332698 | 5.1:-49869462 | None:intergenic |
| TCAACTAAGGATTATGTGAT+TGG | 0.365760 | 5.1:+49869958 | MS.gene64133:CDS |
| AGCAGAGAAAGGGGTTGCTT+TGG | 0.380450 | 5.1:+49871302 | MS.gene64133:CDS |
| TTATTATTGTTGTTGCCGTT+AGG | 0.386452 | 5.1:-49869655 | None:intergenic |
| ACAGCTAAGATTTCAGTTAT+GGG | 0.401537 | 5.1:-49871255 | None:intergenic |
| TTAAGGGAATGAGAATTATT+GGG | 0.403587 | 5.1:-49869588 | None:intergenic |
| AACGGTAACGGTAACGGTTG+TGG | 0.403687 | 5.1:-49869624 | None:intergenic |
| AGAAATTTCAAGCAGAGAAA+GGG | 0.404504 | 5.1:+49871292 | MS.gene64133:CDS |
| TATTATTGTTGTTGCCGTTA+GGG | 0.409224 | 5.1:-49869654 | None:intergenic |
| ACCACCTTTGTTTATCGCTT+CGG | 0.421218 | 5.1:+49869696 | MS.gene64133:CDS |
| GAGAAATTTCAAGCAGAGAA+AGG | 0.424086 | 5.1:+49871291 | MS.gene64133:CDS |
| TTGAAATCCCTTGCTTCCCT+TGG | 0.436924 | 5.1:-49871099 | None:intergenic |
| GAAGCAAGGGATTTCAAGCT+TGG | 0.447995 | 5.1:+49871105 | MS.gene64133:CDS |
| TCTTGTGAAGCATAAGTTCA+CGG | 0.458836 | 5.1:+49869846 | MS.gene64133:CDS |
| GCCATACACGTTTGCCGCCA+TGG | 0.460981 | 5.1:-49869537 | None:intergenic |
| AAGCAAGGGATTTCAAGCTT+GGG | 0.461079 | 5.1:+49871106 | MS.gene64133:CDS |
| TCCATGGCGGCAAACGTGTA+TGG | 0.467259 | 5.1:+49869536 | MS.gene64133:CDS |
| GTGATTGAATGAAGACTTTG+AGG | 0.480812 | 5.1:-49871408 | None:intergenic |
| TTGGGAAGGCAGATGTTTCA+AGG | 0.487413 | 5.1:-49869570 | None:intergenic |
| TGGTCCACCACATGTTCCTA+TGG | 0.488999 | 5.1:-49869491 | None:intergenic |
| ACTTGTTGGTGAGTCAACTA+AGG | 0.493336 | 5.1:+49869945 | MS.gene64133:CDS |
| GTGGATGTGAGAAATGGTTA+AGG | 0.494562 | 5.1:-49869605 | None:intergenic |
| GCTAATTATTCTTTCCACCA+TGG | 0.494814 | 5.1:-49869401 | None:intergenic |
| GATGGTGGAGATAGACTTGT+TGG | 0.502081 | 5.1:+49869931 | MS.gene64133:CDS |
| TTTATCGCTTCGGCAGTCAT+CGG | 0.508139 | 5.1:+49869706 | MS.gene64133:CDS |
| CACATGTTCCTATGGCTAAG+AGG | 0.511689 | 5.1:-49869483 | None:intergenic |
| TTTGGTAACGGTAACGGTAA+CGG | 0.513127 | 5.1:-49869630 | None:intergenic |
| CGATTTCGTAGGTGATTCCA+AGG | 0.517543 | 5.1:+49871082 | MS.gene64133:intron |
| GTAGAGGTAGTCGTCTAAAC+CGG | 0.524198 | 5.1:-49869737 | None:intergenic |
| TTATAAACCAACTCCAACAA+CGG | 0.529943 | 5.1:-49870027 | None:intergenic |
| ACGGTTGTGGATGTGAGAAA+TGG | 0.530168 | 5.1:-49869611 | None:intergenic |
| GAAATTTCAAGCAGAGAAAG+GGG | 0.546511 | 5.1:+49871293 | MS.gene64133:CDS |
| GCTTTGGTGCTCTCACTTTG+GGG | 0.547915 | 5.1:+49871318 | MS.gene64133:CDS |
| TGGATGTGAGAAATGGTTAA+GGG | 0.553222 | 5.1:-49869604 | None:intergenic |
| CGGTAGACGCTTTATGCCGC+AGG | 0.567407 | 5.1:-49869761 | None:intergenic |
| AGGTGATTCCAAGGGAAGCA+AGG | 0.567865 | 5.1:+49871091 | MS.gene64133:intron |
| CTGCGGCATAAAGCGTCTAC+CGG | 0.571271 | 5.1:+49869762 | MS.gene64133:CDS |
| GCAGTCATCGGAGTTCTCAC+CGG | 0.580044 | 5.1:+49869718 | MS.gene64133:CDS |
| ATGCGTTTATACTTCATCCA+TGG | 0.581468 | 5.1:+49869520 | MS.gene64133:CDS |
| AGCAAGGGATTTCAAGCTTG+GGG | 0.584822 | 5.1:+49871107 | MS.gene64133:CDS |
| AGTACTATGTTGTGCTAGTG+TGG | 0.588131 | 5.1:+49871136 | MS.gene64133:CDS |
| CTCTTAGCCATAGGAACATG+TGG | 0.591598 | 5.1:+49869484 | MS.gene64133:CDS |
| AATGCCAGATAGCAATGAAG+AGG | 0.600270 | 5.1:-49871214 | None:intergenic |
| AACTCAATCCTCTTAGCCAT+AGG | 0.604730 | 5.1:+49869475 | MS.gene64133:CDS |
| GTGCCAAAACAACACTCCCA+AGG | 0.608152 | 5.1:-49869900 | None:intergenic |
| TGCCAAAACAACACTCCCAA+GGG | 0.608894 | 5.1:-49869899 | None:intergenic |
| GGGAATGAGAATTATTGGGA+AGG | 0.610936 | 5.1:-49869584 | None:intergenic |
| TACCGTTACCAAAACCCTAA+CGG | 0.615357 | 5.1:+49869640 | MS.gene64133:CDS |
| GGTGATTCCAAGGGAAGCAA+GGG | 0.622275 | 5.1:+49871092 | MS.gene64133:intron |
| CGCGGTGAAAGCTAAGTGTG+AGG | 0.632940 | 5.1:-49869809 | None:intergenic |
| AAGTATAAACGCATTACTAG+TGG | 0.641109 | 5.1:-49869511 | None:intergenic |
| GCTTTATGCCGCAGGCGTAG+AGG | 0.652914 | 5.1:-49869753 | None:intergenic |
| TTGGCACTGAATTCTGATGG+TGG | 0.661099 | 5.1:+49869916 | MS.gene64133:CDS |
| GACGACTACCTCTACGCCTG+CGG | 0.669034 | 5.1:+49869745 | MS.gene64133:CDS |
| CGTTTATACTTCATCCATGG+CGG | 0.677695 | 5.1:+49869523 | MS.gene64133:CDS |
| TTAGCCATAGGAACATGTGG+TGG | 0.677866 | 5.1:+49869487 | MS.gene64133:CDS |
| ACTGCCGAAGCGATAAACAA+AGG | 0.695167 | 5.1:-49869700 | None:intergenic |
| ATTAACGAAGAAGTTGACAC+CGG | 0.698512 | 5.1:-49869781 | None:intergenic |
| GCCGAAGCGATAAACAAAGG+TGG | 0.698965 | 5.1:-49869697 | None:intergenic |
| GATTTCGTAGGTGATTCCAA+GGG | 0.713597 | 5.1:+49871083 | MS.gene64133:intron |
| TAGTGTGGAGTGCTATAATG+TGG | 0.749239 | 5.1:+49871151 | MS.gene64133:CDS |
| CTCACACTTAGCTTTCACCG+CGG | 0.755684 | 5.1:+49869810 | MS.gene64133:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATAGAATTAGAATA+AGG | + | chr5.1:49870484-49870503 | MS.gene64133:intron | 10.0% |
| !! | GTTAAAAGTTTAAATAAAAA+AGG | - | chr5.1:49870281-49870300 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:49870508-49870527 | None:intergenic | 100.0% |
| !! | AAAAATGAAAAATAGAGAAA+TGG | + | chr5.1:49871380-49871399 | MS.gene64133:CDS | 15.0% |
| !! | AAATAAAAAAGGAAAAAACA+TGG | - | chr5.1:49870270-49870289 | None:intergenic | 15.0% |
| !! | ATCAATAATTCAATATCAAT+GGG | - | chr5.1:49870591-49870610 | None:intergenic | 15.0% |
| !! | CTAAGAATAATTATTACATT+TGG | + | chr5.1:49870647-49870666 | MS.gene64133:intron | 15.0% |
| !! | TATTACTAATGTAAAACATA+AGG | - | chr5.1:49871051-49871070 | None:intergenic | 15.0% |
| !!! | AAAAGTTTCTTTTAATTGTA+AGG | + | chr5.1:49870766-49870785 | MS.gene64133:intron | 15.0% |
| !!! | AAAATTTAAAACCTAAATTG+TGG | - | chr5.1:49870724-49870743 | None:intergenic | 15.0% |
| !!! | AAATTTAAAACCTAAATTGT+GGG | - | chr5.1:49870723-49870742 | None:intergenic | 15.0% |
| !! | AATAAACACAATGTAAAACA+TGG | - | chr5.1:49870904-49870923 | None:intergenic | 20.0% |
| !! | ATAACAGAATTAGAATATTG+TGG | + | chr5.1:49870453-49870472 | MS.gene64133:intron | 20.0% |
| !! | CATCAATAATTCAATATCAA+TGG | - | chr5.1:49870592-49870611 | None:intergenic | 20.0% |
| !! | TATTACTTATTCTCTTGTTA+TGG | + | chr5.1:49870065-49870084 | MS.gene64133:CDS | 20.0% |
| !!! | AGATGAGTTTATATTTTATG+CGG | - | chr5.1:49870862-49870881 | None:intergenic | 20.0% |
| ! | AATCCTTACGTAAATTAAGT+TGG | - | chr5.1:49870687-49870706 | None:intergenic | 25.0% |
| ! | ATATGTATAGTAAGTTGTTG+TGG | - | chr5.1:49870998-49871017 | None:intergenic | 25.0% |
| ! | ATTCCAACTTAATTTACGTA+AGG | + | chr5.1:49870681-49870700 | MS.gene64133:intron | 25.0% |
| ! | TAAGAATAACACACATTCTA+AGG | - | chr5.1:49870396-49870415 | None:intergenic | 25.0% |
| ! | TTAAGGGAATGAGAATTATT+GGG | - | chr5.1:49869591-49869610 | None:intergenic | 25.0% |
| ! | TTATTCTTAGATTCAATACG+TGG | - | chr5.1:49870637-49870656 | None:intergenic | 25.0% |
| !! | GATCATAGACAATGATTTTA+AGG | + | chr5.1:49870140-49870159 | MS.gene64133:CDS | 25.0% |
| !!! | GATTGGTTTTGTTATGATAT+TGG | + | chr5.1:49869975-49869994 | MS.gene64133:CDS | 25.0% |
| !!! | GTTTCTTTTAATTGTAAGGT+AGG | + | chr5.1:49870770-49870789 | MS.gene64133:intron | 25.0% |
| AAAACACGTGTACATTTGTT+TGG | - | chr5.1:49870357-49870376 | None:intergenic | 30.0% | |
| AACAGCTAAGATTTCAGTTA+TGG | - | chr5.1:49871259-49871278 | None:intergenic | 30.0% | |
| AAGTATAAACGCATTACTAG+TGG | - | chr5.1:49869514-49869533 | None:intergenic | 30.0% | |
| AATTGTGAGTGTACAAAGTA+TGG | - | chr5.1:49870207-49870226 | None:intergenic | 30.0% | |
| ACAATGTAAAACATGGAAGT+CGG | - | chr5.1:49870897-49870916 | None:intergenic | 30.0% | |
| ACAGCTAAGATTTCAGTTAT+GGG | - | chr5.1:49871258-49871277 | None:intergenic | 30.0% | |
| AGAAATTTCAAGCAGAGAAA+GGG | + | chr5.1:49871292-49871311 | MS.gene64133:CDS | 30.0% | |
| GGATTGAGTTTAGTATTAGA+AGG | - | chr5.1:49869465-49869484 | None:intergenic | 30.0% | |
| GTTAAGGGAATGAGAATTAT+TGG | - | chr5.1:49869592-49869611 | None:intergenic | 30.0% | |
| TCAACTAAGGATTATGTGAT+TGG | + | chr5.1:49869958-49869977 | MS.gene64133:CDS | 30.0% | |
| TTATAAACCAACTCCAACAA+CGG | - | chr5.1:49870030-49870049 | None:intergenic | 30.0% | |
| TTGAGAAACAAAAAGAGAGA+GGG | - | chr5.1:49870554-49870573 | None:intergenic | 30.0% | |
| TTTGAGAAACAAAAAGAGAG+AGG | - | chr5.1:49870555-49870574 | None:intergenic | 30.0% | |
| ! | ATGTGGCAATTTTTCTTCTT+AGG | + | chr5.1:49871168-49871187 | MS.gene64133:CDS | 30.0% |
| ! | TATTATTGTTGTTGCCGTTA+GGG | - | chr5.1:49869657-49869676 | None:intergenic | 30.0% |
| ! | TTATTATTGTTGTTGCCGTT+AGG | - | chr5.1:49869658-49869677 | None:intergenic | 30.0% |
| AATTGTGAGTGTACAAAGCA+TGG | - | chr5.1:49870303-49870322 | None:intergenic | 35.0% | |
| ATGCGTTTATACTTCATCCA+TGG | + | chr5.1:49869520-49869539 | MS.gene64133:CDS | 35.0% | |
| ATTAACGAAGAAGTTGACAC+CGG | - | chr5.1:49869784-49869803 | None:intergenic | 35.0% | |
| CAATCTTAGTCCCACAATTT+AGG | + | chr5.1:49870710-49870729 | MS.gene64133:intron | 35.0% | |
| CTAAATTGTGGGACTAAGAT+TGG | - | chr5.1:49870712-49870731 | None:intergenic | 35.0% | |
| GAAATTTCAAGCAGAGAAAG+GGG | + | chr5.1:49871293-49871312 | MS.gene64133:CDS | 35.0% | |
| GAGAAATTTCAAGCAGAGAA+AGG | + | chr5.1:49871291-49871310 | MS.gene64133:CDS | 35.0% | |
| GTACATTTGTTTGGTTACTG+AGG | - | chr5.1:49870348-49870367 | None:intergenic | 35.0% | |
| GTGATTGAATGAAGACTTTG+AGG | - | chr5.1:49871411-49871430 | None:intergenic | 35.0% | |
| TCTTGTGAAGCATAAGTTCA+CGG | + | chr5.1:49869846-49869865 | MS.gene64133:CDS | 35.0% | |
| TGAGAAACAAAAAGAGAGAG+GGG | - | chr5.1:49870553-49870572 | None:intergenic | 35.0% | |
| TGGATGTGAGAAATGGTTAA+GGG | - | chr5.1:49869607-49869626 | None:intergenic | 35.0% | |
| ! | AATGAGTATTGCGATTTCGT+AGG | + | chr5.1:49871071-49871090 | MS.gene64133:intron | 35.0% |
| ! | TTTTTCTTCTTAGGAGCGAT+TGG | + | chr5.1:49871177-49871196 | MS.gene64133:CDS | 35.0% |
| !! | CTATTGTTTTGTTGACCCTT+GGG | + | chr5.1:49869884-49869903 | MS.gene64133:CDS | 35.0% |
| !! | TCTATTGTTTTGTTGACCCT+TGG | + | chr5.1:49869883-49869902 | MS.gene64133:CDS | 35.0% |
| !!! | CTACTTTGTTTTGCGTTGTT+GGG | + | chr5.1:49870115-49870134 | MS.gene64133:CDS | 35.0% |
| !!! | TGGATTTGTTTTACCGTTGT+TGG | + | chr5.1:49870014-49870033 | MS.gene64133:CDS | 35.0% |
| AACTCAATCCTCTTAGCCAT+AGG | + | chr5.1:49869475-49869494 | MS.gene64133:CDS | 40.0% | |
| AAGAAAAAACGCGAAAACCG+CGG | - | chr5.1:49869830-49869849 | None:intergenic | 40.0% | |
| AAGCAAGGGATTTCAAGCTT+GGG | + | chr5.1:49871106-49871125 | MS.gene64133:CDS | 40.0% | |
| AATGCCAGATAGCAATGAAG+AGG | - | chr5.1:49871217-49871236 | None:intergenic | 40.0% | |
| AGAAACAAAAAGAGAGAGGG+GGG | - | chr5.1:49870551-49870570 | None:intergenic | 40.0% | |
| AGTACTATGTTGTGCTAGTG+TGG | + | chr5.1:49871136-49871155 | MS.gene64133:CDS | 40.0% | |
| CGTTTATACTTCATCCATGG+CGG | + | chr5.1:49869523-49869542 | MS.gene64133:CDS | 40.0% | |
| GAGAAACAAAAAGAGAGAGG+GGG | - | chr5.1:49870552-49870571 | None:intergenic | 40.0% | |
| GATTTCGTAGGTGATTCCAA+GGG | + | chr5.1:49871083-49871102 | MS.gene64133:intron | 40.0% | |
| GGGAATGAGAATTATTGGGA+AGG | - | chr5.1:49869587-49869606 | None:intergenic | 40.0% | |
| GTGGATGTGAGAAATGGTTA+AGG | - | chr5.1:49869608-49869627 | None:intergenic | 40.0% | |
| TACCGTTACCAAAACCCTAA+CGG | + | chr5.1:49869640-49869659 | MS.gene64133:CDS | 40.0% | |
| ! | ACCACCTTTGTTTATCGCTT+CGG | + | chr5.1:49869696-49869715 | MS.gene64133:CDS | 40.0% |
| ! | ACTTGTTGGTGAGTCAACTA+AGG | + | chr5.1:49869945-49869964 | MS.gene64133:CDS | 40.0% |
| ! | TAGTGTGGAGTGCTATAATG+TGG | + | chr5.1:49871151-49871170 | MS.gene64133:CDS | 40.0% |
| ! | TGTTTTACCGTTGTTGGAGT+TGG | + | chr5.1:49870020-49870039 | MS.gene64133:CDS | 40.0% |
| !! | GTTTTGGCACTGAATTCTGA+TGG | + | chr5.1:49869913-49869932 | MS.gene64133:CDS | 40.0% |
| !! | TTTGGTAACGGTAACGGTAA+CGG | - | chr5.1:49869633-49869652 | None:intergenic | 40.0% |
| !!! | GCTACTTTGTTTTGCGTTGT+TGG | + | chr5.1:49870114-49870133 | MS.gene64133:CDS | 40.0% |
| !!! | TAGGGTTTTGGTAACGGTAA+CGG | - | chr5.1:49869639-49869658 | None:intergenic | 40.0% |
| AAACAAAAAGAGAGAGGGGG+GGG | - | chr5.1:49870549-49870568 | None:intergenic | 45.0% | |
| ACGGTTGTGGATGTGAGAAA+TGG | - | chr5.1:49869614-49869633 | None:intergenic | 45.0% | |
| ACTGCCGAAGCGATAAACAA+AGG | - | chr5.1:49869703-49869722 | None:intergenic | 45.0% | |
| AGCAAGGGATTTCAAGCTTG+GGG | + | chr5.1:49871107-49871126 | MS.gene64133:CDS | 45.0% | |
| CACATGTTCCTATGGCTAAG+AGG | - | chr5.1:49869486-49869505 | None:intergenic | 45.0% | |
| CGATTTCGTAGGTGATTCCA+AGG | + | chr5.1:49871082-49871101 | MS.gene64133:intron | 45.0% | |
| CGGTAAGAAAATGTGCAGTG+AGG | - | chr5.1:49870842-49870861 | None:intergenic | 45.0% | |
| CTCTTAGCCATAGGAACATG+TGG | + | chr5.1:49869484-49869503 | MS.gene64133:CDS | 45.0% | |
| GAAACAAAAAGAGAGAGGGG+GGG | - | chr5.1:49870550-49870569 | None:intergenic | 45.0% | |
| GAAGCAAGGGATTTCAAGCT+TGG | + | chr5.1:49871105-49871124 | MS.gene64133:CDS | 45.0% | |
| GTAGAGGTAGTCGTCTAAAC+CGG | - | chr5.1:49869740-49869759 | None:intergenic | 45.0% | |
| TGCCAAAACAACACTCCCAA+GGG | - | chr5.1:49869902-49869921 | None:intergenic | 45.0% | |
| TGTGCCTCTTCATTGCTATC+TGG | + | chr5.1:49871210-49871229 | MS.gene64133:CDS | 45.0% | |
| TTAGCCATAGGAACATGTGG+TGG | + | chr5.1:49869487-49869506 | MS.gene64133:CDS | 45.0% | |
| TTGAAATCCCTTGCTTCCCT+TGG | - | chr5.1:49871102-49871121 | None:intergenic | 45.0% | |
| TTGGGAAGGCAGATGTTTCA+AGG | - | chr5.1:49869573-49869592 | None:intergenic | 45.0% | |
| TTTATCGCTTCGGCAGTCAT+CGG | + | chr5.1:49869706-49869725 | MS.gene64133:CDS | 45.0% | |
| ! | TGTTGTTGCCGTTAGGGTTT+TGG | - | chr5.1:49869651-49869670 | None:intergenic | 45.0% |
| ! | TTGGCACTGAATTCTGATGG+TGG | + | chr5.1:49869916-49869935 | MS.gene64133:CDS | 45.0% |
| !! | GATGGTGGAGATAGACTTGT+TGG | + | chr5.1:49869931-49869950 | MS.gene64133:CDS | 45.0% |
| !! | TGCCGTTAGGGTTTTGGTAA+CGG | - | chr5.1:49869645-49869664 | None:intergenic | 45.0% |
| !! | TGCTTTGGTGCTCTCACTTT+GGG | + | chr5.1:49871317-49871336 | MS.gene64133:CDS | 45.0% |
| !! | TTGCTTTGGTGCTCTCACTT+TGG | + | chr5.1:49871316-49871335 | MS.gene64133:CDS | 45.0% |
| !! | TTGGCTTCTGCTGCTTTGTA+TGG | + | chr5.1:49869994-49870013 | MS.gene64133:CDS | 45.0% |
| !!! | ATTTTTTTAATTCTTTATTT+AGG | + | chr5.1:49870739-49870758 | MS.gene64133:intron | 5.0% |
| AACAAAAAGAGAGAGGGGGG+GGG | - | chr5.1:49870548-49870567 | None:intergenic | 50.0% | |
| AGCAGAGAAAGGGGTTGCTT+TGG | + | chr5.1:49871302-49871321 | MS.gene64133:CDS | 50.0% | |
| AGGTGATTCCAAGGGAAGCA+AGG | + | chr5.1:49871091-49871110 | MS.gene64133:intron | 50.0% | |
| GCCGAAGCGATAAACAAAGG+TGG | - | chr5.1:49869700-49869719 | None:intergenic | 50.0% | |
| GGTGATTCCAAGGGAAGCAA+GGG | + | chr5.1:49871092-49871111 | MS.gene64133:intron | 50.0% | |
| GTGCCAAAACAACACTCCCA+AGG | - | chr5.1:49869903-49869922 | None:intergenic | 50.0% | |
| TGGTCCACCACATGTTCCTA+TGG | - | chr5.1:49869494-49869513 | None:intergenic | 50.0% | |
| ! | AACGGTAACGGTAACGGTTG+TGG | - | chr5.1:49869627-49869646 | None:intergenic | 50.0% |
| ! | CTCACACTTAGCTTTCACCG+CGG | + | chr5.1:49869810-49869829 | MS.gene64133:CDS | 50.0% |
| !! | GCTTTGGTGCTCTCACTTTG+GGG | + | chr5.1:49871318-49871337 | MS.gene64133:CDS | 50.0% |
| !!! | GACCCTTGGGAGTGTTGTTT+TGG | + | chr5.1:49869897-49869916 | MS.gene64133:CDS | 50.0% |
| ACAAAAAGAGAGAGGGGGGG+GGG | - | chr5.1:49870547-49870566 | None:intergenic | 55.0% | |
| CGCGGTGAAAGCTAAGTGTG+AGG | - | chr5.1:49869812-49869831 | None:intergenic | 55.0% | |
| GCAGTCATCGGAGTTCTCAC+CGG | + | chr5.1:49869718-49869737 | MS.gene64133:CDS | 55.0% | |
| TCCATGGCGGCAAACGTGTA+TGG | + | chr5.1:49869536-49869555 | MS.gene64133:CDS | 55.0% | |
| ! | CTGCGGCATAAAGCGTCTAC+CGG | + | chr5.1:49869762-49869781 | MS.gene64133:CDS | 55.0% |
| AAAAAGAGAGAGGGGGGGGG+GGG | - | chr5.1:49870545-49870564 | None:intergenic | 60.0% | |
| CAAAAAGAGAGAGGGGGGGG+GGG | - | chr5.1:49870546-49870565 | None:intergenic | 60.0% | |
| CGGTAGACGCTTTATGCCGC+AGG | - | chr5.1:49869764-49869783 | None:intergenic | 60.0% | |
| GACGACTACCTCTACGCCTG+CGG | + | chr5.1:49869745-49869764 | MS.gene64133:CDS | 60.0% | |
| GCCATACACGTTTGCCGCCA+TGG | - | chr5.1:49869540-49869559 | None:intergenic | 60.0% | |
| GCTTTATGCCGCAGGCGTAG+AGG | - | chr5.1:49869756-49869775 | None:intergenic | 60.0% | |
| AAAAGAGAGAGGGGGGGGGG+GGG | - | chr5.1:49870544-49870563 | None:intergenic | 65.0% | |
| AAAGAGAGAGGGGGGGGGGG+GGG | - | chr5.1:49870543-49870562 | None:intergenic | 70.0% | |
| AAGAGAGAGGGGGGGGGGGG+GGG | - | chr5.1:49870542-49870561 | None:intergenic | 75.0% | |
| ! | AGAGAGAGGGGGGGGGGGGG+GGG | - | chr5.1:49870541-49870560 | None:intergenic | 80.0% |
| ! | AGAGAGGGGGGGGGGGGGGG+GGG | - | chr5.1:49870539-49870558 | None:intergenic | 85.0% |
| ! | GAGAGAGGGGGGGGGGGGGG+GGG | - | chr5.1:49870540-49870559 | None:intergenic | 85.0% |
| ! | AGAGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:49870537-49870556 | None:intergenic | 90.0% |
| ! | GAGAGGGGGGGGGGGGGGGG+GGG | - | chr5.1:49870538-49870557 | None:intergenic | 90.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:49870535-49870554 | None:intergenic | 95.0% |
| ! | GAGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:49870536-49870555 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 49869403 | 49871434 | 49869403 | ID=MS.gene64133 |
| chr5.1 | mRNA | 49869403 | 49871434 | 49869403 | ID=MS.gene64133.t1;Parent=MS.gene64133 |
| chr5.1 | exon | 49869403 | 49870161 | 49869403 | ID=MS.gene64133.t1.exon1;Parent=MS.gene64133.t1 |
| chr5.1 | CDS | 49869403 | 49870161 | 49869403 | ID=cds.MS.gene64133.t1;Parent=MS.gene64133.t1 |
| chr5.1 | exon | 49871093 | 49871434 | 49871093 | ID=MS.gene64133.t1.exon2;Parent=MS.gene64133.t1 |
| chr5.1 | CDS | 49871093 | 49871434 | 49871093 | ID=cds.MS.gene64133.t1;Parent=MS.gene64133.t1 |
| Gene Sequence |
| Protein sequence |
