Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020463.t1 | XP_003602860.2 | 92.7 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 1.80E-184 | 655.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020463.t1 | Q9FZ95 | 57.9 | 354 | 135 | 2 | 13 | 366 | 1 | 340 | 2.8e-109 | 396.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020463.t1 | G7J4H5 | 92.7 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 1.3e-184 | 655.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38573 | MS.gene020463 | PPI |
| MS.gene38616 | MS.gene020463 | PPI |
| MS.gene64133 | MS.gene020463 | PPI |
| MS.gene013113 | MS.gene020463 | PPI |
| MS.gene020463 | MS.gene043890 | PPI |
| MS.gene020463 | MS.gene010157 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020463.t1 | MTR_3g099740 | 92.742 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 0.0 | 692 |
| MS.gene020463.t1 | MTR_3g099750 | 87.871 | 371 | 44 | 1 | 1 | 371 | 1 | 370 | 0.0 | 665 |
| MS.gene020463.t1 | MTR_5g065080 | 63.315 | 368 | 120 | 5 | 2 | 368 | 10 | 363 | 2.97e-157 | 446 |
| MS.gene020463.t1 | MTR_2g437590 | 37.644 | 348 | 195 | 5 | 14 | 358 | 67 | 395 | 8.67e-72 | 230 |
| MS.gene020463.t1 | MTR_3g058660 | 32.749 | 342 | 220 | 2 | 3 | 344 | 2 | 333 | 1.34e-62 | 204 |
| MS.gene020463.t1 | MTR_2g015470 | 31.429 | 350 | 228 | 3 | 16 | 365 | 42 | 379 | 3.44e-60 | 199 |
| MS.gene020463.t1 | MTR_2g437580 | 33.702 | 362 | 209 | 5 | 1 | 354 | 34 | 372 | 2.91e-55 | 186 |
| MS.gene020463.t1 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 43 | 351 | 6.04e-52 | 177 |
| MS.gene020463.t1 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 54 | 362 | 9.99e-52 | 176 |
| MS.gene020463.t1 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 55 | 363 | 1.02e-51 | 176 |
| MS.gene020463.t1 | MTR_7g080750 | 32.000 | 350 | 200 | 6 | 11 | 351 | 20 | 340 | 1.32e-50 | 173 |
| MS.gene020463.t1 | MTR_4g098900 | 30.836 | 347 | 205 | 8 | 25 | 367 | 44 | 359 | 1.91e-50 | 174 |
| MS.gene020463.t1 | MTR_6g082540 | 33.333 | 153 | 102 | 0 | 197 | 349 | 4 | 156 | 5.02e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020463.t1 | AT1G28220 | 59.475 | 343 | 126 | 3 | 13 | 355 | 1 | 330 | 1.84e-145 | 416 |
| MS.gene020463.t1 | AT2G33750 | 55.398 | 352 | 143 | 2 | 12 | 363 | 2 | 339 | 6.77e-134 | 386 |
| MS.gene020463.t1 | AT1G28230 | 58.601 | 343 | 136 | 2 | 13 | 354 | 1 | 338 | 2.04e-132 | 383 |
| MS.gene020463.t1 | AT2G33750 | 53.719 | 363 | 143 | 3 | 12 | 363 | 2 | 350 | 2.46e-130 | 378 |
| MS.gene020463.t1 | AT4G18205 | 36.585 | 328 | 184 | 5 | 37 | 360 | 61 | 368 | 2.03e-57 | 191 |
| MS.gene020463.t1 | AT4G18220 | 33.537 | 328 | 203 | 2 | 28 | 355 | 57 | 369 | 2.61e-57 | 191 |
| MS.gene020463.t1 | AT4G18210 | 30.532 | 357 | 231 | 4 | 1 | 355 | 28 | 369 | 9.17e-53 | 180 |
| MS.gene020463.t1 | AT1G30840 | 32.320 | 362 | 212 | 5 | 17 | 363 | 27 | 370 | 4.52e-52 | 177 |
| MS.gene020463.t1 | AT1G30840 | 32.320 | 362 | 212 | 5 | 17 | 363 | 27 | 370 | 4.52e-52 | 177 |
| MS.gene020463.t1 | AT4G18197 | 35.826 | 321 | 182 | 5 | 37 | 353 | 64 | 364 | 6.06e-51 | 175 |
| MS.gene020463.t1 | AT4G18195 | 31.921 | 354 | 224 | 5 | 3 | 355 | 32 | 369 | 1.60e-49 | 171 |
| MS.gene020463.t1 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 26 | 364 | 3.48e-45 | 159 |
| MS.gene020463.t1 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 26 | 364 | 3.48e-45 | 159 |
| MS.gene020463.t1 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 38 | 376 | 4.70e-45 | 159 |
| MS.gene020463.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene020463.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene020463.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene020463.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene020463.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene020463.t1 | AT4G18190 | 31.215 | 362 | 229 | 4 | 3 | 357 | 20 | 368 | 9.01e-43 | 153 |
| MS.gene020463.t1 | AT2G24220 | 34.967 | 306 | 178 | 3 | 34 | 338 | 56 | 341 | 1.34e-40 | 147 |
| MS.gene020463.t1 | AT2G24220 | 34.967 | 306 | 178 | 3 | 34 | 338 | 74 | 359 | 1.65e-40 | 147 |
| MS.gene020463.t1 | AT4G08700 | 27.350 | 351 | 228 | 4 | 12 | 354 | 28 | 359 | 1.28e-38 | 142 |
| MS.gene020463.t1 | AT5G41160 | 27.356 | 329 | 211 | 3 | 34 | 354 | 54 | 362 | 1.36e-34 | 131 |
| MS.gene020463.t1 | AT1G19770 | 27.389 | 314 | 206 | 5 | 47 | 349 | 88 | 390 | 9.22e-26 | 107 |
| MS.gene020463.t1 | AT1G57943 | 24.796 | 367 | 234 | 9 | 11 | 353 | 37 | 385 | 4.18e-19 | 88.6 |
| MS.gene020463.t1 | AT1G57943 | 24.796 | 367 | 234 | 9 | 11 | 353 | 36 | 384 | 4.23e-19 | 88.2 |
| MS.gene020463.t1 | AT1G57980 | 26.882 | 372 | 222 | 11 | 7 | 353 | 35 | 381 | 3.68e-17 | 82.8 |
| MS.gene020463.t1 | AT1G57990 | 25.199 | 377 | 237 | 13 | 10 | 364 | 31 | 384 | 4.98e-17 | 82.0 |
| MS.gene020463.t1 | AT1G47603 | 26.271 | 354 | 224 | 9 | 17 | 352 | 49 | 383 | 6.91e-17 | 81.6 |
Find 91 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGGAAGCCAGAAATTT+TGG | 0.087944 | 3.3:+82291576 | MS.gene020463:CDS |
| TTCTCCTAGCCCAAAATTTC+TGG | 0.134659 | 3.3:-82291586 | None:intergenic |
| GTCACTTGTACTTTCTCTTT+GGG | 0.234346 | 3.3:+82291794 | MS.gene020463:CDS |
| TGTCACTTGTACTTTCTCTT+TGG | 0.252362 | 3.3:+82291793 | MS.gene020463:CDS |
| GGGTTTGTGTCCTATTTCTA+TGG | 0.257650 | 3.3:+82291816 | MS.gene020463:CDS |
| CATCACTTATTCTCTTGTTA+TGG | 0.272446 | 3.3:+82291020 | MS.gene020463:CDS |
| TACTGTTGGAGCTGGTGTTT+TGG | 0.297117 | 3.3:+82290855 | MS.gene020463:CDS |
| AAGCTGAGATGCTATAATTA+AGG | 0.307702 | 3.3:-82290755 | None:intergenic |
| TTTGATCTCTCCATAGAAAT+AGG | 0.310546 | 3.3:-82291826 | None:intergenic |
| TTCTTCGCAGCCGCCTTTGT+CGG | 0.322986 | 3.3:+82290664 | MS.gene020463:CDS |
| TCCACGGTGGCCAACGTGTC+TGG | 0.357144 | 3.3:+82290479 | MS.gene020463:CDS |
| ATTAAGGAAGAAGTGGAAAC+TGG | 0.360569 | 3.3:-82290739 | None:intergenic |
| GCCACTCTCTTCTGTGTCAT+AGG | 0.361474 | 3.3:+82291069 | MS.gene020463:CDS |
| AAGGCGGCTGCGAAGAAAAT+AGG | 0.380819 | 3.3:-82290658 | None:intergenic |
| GTTGCTGCTTCTGCATTGTA+TGG | 0.384050 | 3.3:+82290949 | MS.gene020463:CDS |
| TGGTGGATGGTGGAGGATGG+TGG | 0.385105 | 3.3:-82290585 | None:intergenic |
| AGCATCTCAGCTTGGTTTCA+CGG | 0.387235 | 3.3:+82290765 | MS.gene020463:CDS |
| TTGTGCTTCATCGTTATTGT+CGG | 0.390415 | 3.3:+82291686 | MS.gene020463:CDS |
| TCTGCAAAACAATATGCAAT+TGG | 0.407462 | 3.3:+82290913 | MS.gene020463:CDS |
| AATGAGCATCAAGGGGAAAC+CGG | 0.411490 | 3.3:-82290524 | None:intergenic |
| GTGGAGGATGGTGGCGGTGA+CGG | 0.413276 | 3.3:-82290576 | None:intergenic |
| TGGTGGTGGATGGTGGAGGA+TGG | 0.424033 | 3.3:-82290588 | None:intergenic |
| ACTGCCAACACTTCCGTTAG+TGG | 0.430603 | 3.3:-82291732 | None:intergenic |
| CCAAAATTTCTGGCTTCCCT+TGG | 0.437025 | 3.3:-82291576 | None:intergenic |
| ATGGAGATGGTGGTGGATGG+TGG | 0.439294 | 3.3:-82290595 | None:intergenic |
| AGGGGAAACCGGCGGTTTCA+AGG | 0.456800 | 3.3:-82290513 | None:intergenic |
| GAAGAAAATAGGTGGTTTCA+TGG | 0.464745 | 3.3:-82290647 | None:intergenic |
| TGTGCTTCATCGTTATTGTC+GGG | 0.468631 | 3.3:+82291687 | MS.gene020463:CDS |
| TGAAATAGAGACGCATTATG+AGG | 0.471366 | 3.3:-82290456 | None:intergenic |
| GAAACCGGCGGTTTCAAGGC+AGG | 0.471915 | 3.3:-82290509 | None:intergenic |
| TATACGCATATGGCGTTGCT+CGG | 0.473462 | 3.3:+82290713 | MS.gene020463:CDS |
| GGTGGCGGTGACGGCAGCGT+TGG | 0.474148 | 3.3:-82290567 | None:intergenic |
| AGAGATGGGTCAAACTATAG+AGG | 0.476548 | 3.3:+82291887 | MS.gene020463:CDS |
| GAGATGGTGGTGGATGGTGG+AGG | 0.481262 | 3.3:-82290592 | None:intergenic |
| TTCTGCAGGGGAGATGGAGA+TGG | 0.481331 | 3.3:-82290608 | None:intergenic |
| TCCGCCTGCCTTGAAACCGC+CGG | 0.494963 | 3.3:+82290505 | MS.gene020463:CDS |
| TGGATGGTGGAGGATGGTGG+CGG | 0.496654 | 3.3:-82290582 | None:intergenic |
| GACGACTATCTATACGCATA+TGG | 0.496685 | 3.3:+82290703 | MS.gene020463:CDS |
| TCACTTGTACTTTCTCTTTG+GGG | 0.497301 | 3.3:+82291795 | MS.gene020463:CDS |
| TGCTATAATTAAGGAAGAAG+TGG | 0.500757 | 3.3:-82290746 | None:intergenic |
| GCCTTTGTCGGAATCCTCAC+CGG | 0.517140 | 3.3:+82290676 | MS.gene020463:CDS |
| GAGAACACACACATGGAAGA+AGG | 0.519888 | 3.3:+82290346 | None:intergenic |
| TGAAATTGTAGGTGATTCCA+AGG | 0.522629 | 3.3:+82291559 | MS.gene020463:intron |
| CACTTGTACTTTCTCTTTGG+GGG | 0.524039 | 3.3:+82291796 | MS.gene020463:CDS |
| GAGATGGAGATGGTGGTGGA+TGG | 0.526036 | 3.3:-82290598 | None:intergenic |
| AAGCACTTACTATGTTGTGC+TGG | 0.526613 | 3.3:+82291608 | MS.gene020463:CDS |
| AGGGGAGATGGAGATGGTGG+TGG | 0.533508 | 3.3:-82290602 | None:intergenic |
| ACGAGTAGTGATCGTCCTGC+TGG | 0.534270 | 3.3:+82290886 | MS.gene020463:CDS |
| GAGATGGGTCAAACTATAGA+GGG | 0.546898 | 3.3:+82291888 | MS.gene020463:CDS |
| GAAATAGAGACGCATTATGA+GGG | 0.555409 | 3.3:-82290455 | None:intergenic |
| TGTGAGGGGAATGAGCATCA+AGG | 0.555704 | 3.3:-82290533 | None:intergenic |
| TGCAGGGGAGATGGAGATGG+TGG | 0.556329 | 3.3:-82290605 | None:intergenic |
| TGCTGTGTTGTTACCACTAA+CGG | 0.559279 | 3.3:+82291719 | MS.gene020463:CDS |
| TTAATTATAGCATCTCAGCT+TGG | 0.560458 | 3.3:+82290757 | MS.gene020463:CDS |
| GGGGACCACCGGAGTTACCT+AGG | 0.561334 | 3.3:-82290435 | None:intergenic |
| GTATAGATAGTCGTCAAGAC+CGG | 0.571261 | 3.3:-82290695 | None:intergenic |
| GTGAGGGGAATGAGCATCAA+GGG | 0.571589 | 3.3:-82290532 | None:intergenic |
| TGAGACAATTTACGATGAGA+AGG | 0.575041 | 3.3:-82290405 | None:intergenic |
| ACCGGTGAGGATTCCGACAA+AGG | 0.576753 | 3.3:-82290677 | None:intergenic |
| ACGCATTATGAGGGGACCAC+CGG | 0.577761 | 3.3:-82290446 | None:intergenic |
| ACGTGGTTTAGAAATAGAGA+TGG | 0.580816 | 3.3:+82291872 | MS.gene020463:CDS |
| CTACATTCCAATCACGGAGC+AGG | 0.590513 | 3.3:-82291915 | None:intergenic |
| GTTACCACTAACGGAAGTGT+TGG | 0.591263 | 3.3:+82291728 | MS.gene020463:CDS |
| AATTGTCTCATATTAGCCCT+AGG | 0.596481 | 3.3:+82290418 | MS.gene020463:CDS |
| CGTGGTTTAGAAATAGAGAT+GGG | 0.596725 | 3.3:+82291873 | MS.gene020463:CDS |
| ATGCGTCTCTATTTCATCCA+CGG | 0.600150 | 3.3:+82290463 | MS.gene020463:CDS |
| ATATTAGCCCTAGGTAACTC+CGG | 0.600554 | 3.3:+82290427 | MS.gene020463:CDS |
| TTATAAACCAACTCAACCGC+AGG | 0.602436 | 3.3:-82290982 | None:intergenic |
| ATAACAAGAGAATAAGTGAT+GGG | 0.603082 | 3.3:-82291018 | None:intergenic |
| CATAACAAGAGAATAAGTGA+TGG | 0.603170 | 3.3:-82291019 | None:intergenic |
| GCCAGACACGTTGGCCACCG+TGG | 0.635417 | 3.3:-82290480 | None:intergenic |
| TCCAACAGTAAGCAAAACAA+TGG | 0.645563 | 3.3:-82290842 | None:intergenic |
| CAATGCAGAAGCAGCAACCG+TGG | 0.651015 | 3.3:-82290944 | None:intergenic |
| GGGACCACCGGAGTTACCTA+GGG | 0.652070 | 3.3:-82290434 | None:intergenic |
| AGGCGGAGAGCCAGACACGT+TGG | 0.658102 | 3.3:-82290489 | None:intergenic |
| GAAATTGTAGGTGATTCCAA+GGG | 0.661077 | 3.3:+82291560 | MS.gene020463:intron |
| GCCTATGACACAGAAGAGAG+TGG | 0.662127 | 3.3:-82291070 | None:intergenic |
| AAATAGAGACGCATTATGAG+GGG | 0.662709 | 3.3:-82290454 | None:intergenic |
| TTGGATGTATGAGATTGTGA+GGG | 0.669115 | 3.3:-82290548 | None:intergenic |
| ACCGGCGGTTTCAAGGCAGG+CGG | 0.670453 | 3.3:-82290506 | None:intergenic |
| GGTGAGGATTCCGACAAAGG+CGG | 0.671382 | 3.3:-82290674 | None:intergenic |
| TGAGGGGAATGAGCATCAAG+GGG | 0.673773 | 3.3:-82290531 | None:intergenic |
| GTTGGATGTATGAGATTGTG+AGG | 0.684853 | 3.3:-82290549 | None:intergenic |
| AGATGGGTCAAACTATAGAG+GGG | 0.703352 | 3.3:+82291889 | MS.gene020463:CDS |
| GCGGCTGCGAAGAAAATAGG+TGG | 0.707986 | 3.3:-82290655 | None:intergenic |
| GAGCATCAAGGGGAAACCGG+CGG | 0.708380 | 3.3:-82290521 | None:intergenic |
| TGGATGTATGAGATTGTGAG+GGG | 0.716192 | 3.3:-82290547 | None:intergenic |
| TTAGCCCTAGGTAACTCCGG+TGG | 0.719716 | 3.3:+82290430 | MS.gene020463:CDS |
| AGAGCAGAAAAGAAGAAACG+TGG | 0.731923 | 3.3:+82291855 | MS.gene020463:CDS |
| CGTCTCTATTTCATCCACGG+TGG | 0.739636 | 3.3:+82290466 | MS.gene020463:CDS |
| GATAGTCGTCAAGACCGGTG+AGG | 0.745103 | 3.3:-82290690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCATCTATTTTGTTT+GGG | + | chr3.3:82291227-82291246 | MS.gene020463:intron | 15.0% |
| !! | AACAAAAATCATTTAGTGTT+TGG | - | chr3.3:82291483-82291502 | None:intergenic | 20.0% |
| !! | AATTAAAAAAATCACAAGTG+TGG | - | chr3.3:82291319-82291338 | None:intergenic | 20.0% |
| !! | AGGTAAGATTACATTAATTA+AGG | + | chr3.3:82291115-82291134 | MS.gene020463:intron | 20.0% |
| !! | TTATGAAATTCTATGTTGTA+TGG | + | chr3.3:82291253-82291272 | MS.gene020463:intron | 20.0% |
| !!! | AATAATTGTGATTGAGATTT+TGG | + | chr3.3:82291533-82291552 | MS.gene020463:intron | 20.0% |
| !!! | ATTAATTAAGGTTGTGTTTT+TGG | + | chr3.3:82291127-82291146 | MS.gene020463:intron | 20.0% |
| !!! | ATTATATTTAGTTTTTCTGC+AGG | - | chr3.3:82290625-82290644 | None:intergenic | 20.0% |
| !!! | CTATTTTCATCTATTTTGTT+TGG | + | chr3.3:82291226-82291245 | MS.gene020463:intron | 20.0% |
| !!! | TTATATTTAGTTTTTCTGCA+GGG | - | chr3.3:82290624-82290643 | None:intergenic | 20.0% |
| ! | AAAAATTCCAAGCAGAAAAA+GGG | + | chr3.3:82291769-82291788 | MS.gene020463:CDS | 25.0% |
| ! | ATAACAAGAGAATAAGTGAT+GGG | - | chr3.3:82291021-82291040 | None:intergenic | 25.0% |
| !! | AGAGATTGGATTTTATTAAG+TGG | + | chr3.3:82291403-82291422 | MS.gene020463:intron | 25.0% |
| !! | GATTGCAAACAATGATTTTA+AGG | + | chr3.3:82291095-82291114 | MS.gene020463:CDS | 25.0% |
| !!! | GATTTTGGATTTGAAATTGT+AGG | + | chr3.3:82291548-82291567 | MS.gene020463:intron | 25.0% |
| !!! | TATATTTAGTTTTTCTGCAG+GGG | - | chr3.3:82290623-82290642 | None:intergenic | 25.0% |
| AAAATTCCAAGCAGAAAAAG+GGG | + | chr3.3:82291770-82291789 | MS.gene020463:CDS | 30.0% | |
| AAGCTGAGATGCTATAATTA+AGG | - | chr3.3:82290758-82290777 | None:intergenic | 30.0% | |
| CATAACAAGAGAATAAGTGA+TGG | - | chr3.3:82291022-82291041 | None:intergenic | 30.0% | |
| CATCACTTATTCTCTTGTTA+TGG | + | chr3.3:82291020-82291039 | MS.gene020463:CDS | 30.0% | |
| GAAAAATTCCAAGCAGAAAA+AGG | + | chr3.3:82291768-82291787 | MS.gene020463:CDS | 30.0% | |
| TCTGCAAAACAATATGCAAT+TGG | + | chr3.3:82290913-82290932 | MS.gene020463:CDS | 30.0% | |
| TGCTATAATTAAGGAAGAAG+TGG | - | chr3.3:82290749-82290768 | None:intergenic | 30.0% | |
| TTAATTATAGCATCTCAGCT+TGG | + | chr3.3:82290757-82290776 | MS.gene020463:CDS | 30.0% | |
| TTTGATCTCTCCATAGAAAT+AGG | - | chr3.3:82291829-82291848 | None:intergenic | 30.0% | |
| !!! | TGCAATTGGTTTTTTAACCA+CGG | + | chr3.3:82290927-82290946 | MS.gene020463:CDS | 30.0% |
| AAATAGAGACGCATTATGAG+GGG | - | chr3.3:82290457-82290476 | None:intergenic | 35.0% | |
| AATTGTCTCATATTAGCCCT+AGG | + | chr3.3:82290418-82290437 | MS.gene020463:CDS | 35.0% | |
| ACGTGGTTTAGAAATAGAGA+TGG | + | chr3.3:82291872-82291891 | MS.gene020463:CDS | 35.0% | |
| ATTAAGGAAGAAGTGGAAAC+TGG | - | chr3.3:82290742-82290761 | None:intergenic | 35.0% | |
| CGTGGTTTAGAAATAGAGAT+GGG | + | chr3.3:82291873-82291892 | MS.gene020463:CDS | 35.0% | |
| GAAATAGAGACGCATTATGA+GGG | - | chr3.3:82290458-82290477 | None:intergenic | 35.0% | |
| GAAATTGTAGGTGATTCCAA+GGG | + | chr3.3:82291560-82291579 | MS.gene020463:intron | 35.0% | |
| GAAGAAAATAGGTGGTTTCA+TGG | - | chr3.3:82290650-82290669 | None:intergenic | 35.0% | |
| GGTTTCGTACAATTAGAGAT+TGG | + | chr3.3:82291389-82291408 | MS.gene020463:intron | 35.0% | |
| GTCACTTGTACTTTCTCTTT+GGG | + | chr3.3:82291794-82291813 | MS.gene020463:CDS | 35.0% | |
| TAGAGTAGTTGAACCTATGA+AGG | + | chr3.3:82291430-82291449 | MS.gene020463:intron | 35.0% | |
| TCACTTGTACTTTCTCTTTG+GGG | + | chr3.3:82291795-82291814 | MS.gene020463:CDS | 35.0% | |
| TCCAACAGTAAGCAAAACAA+TGG | - | chr3.3:82290845-82290864 | None:intergenic | 35.0% | |
| TGAAATAGAGACGCATTATG+AGG | - | chr3.3:82290459-82290478 | None:intergenic | 35.0% | |
| TGAAATTGTAGGTGATTCCA+AGG | + | chr3.3:82291559-82291578 | MS.gene020463:intron | 35.0% | |
| TGAGACAATTTACGATGAGA+AGG | - | chr3.3:82290408-82290427 | None:intergenic | 35.0% | |
| TTGGATGTATGAGATTGTGA+GGG | - | chr3.3:82290551-82290570 | None:intergenic | 35.0% | |
| TTGTGCTTCATCGTTATTGT+CGG | + | chr3.3:82291686-82291705 | MS.gene020463:CDS | 35.0% | |
| ! | TGGCTTTTAATGCGTTAATG+TGG | + | chr3.3:82291628-82291647 | MS.gene020463:CDS | 35.0% |
| ! | TGTCACTTGTACTTTCTCTT+TGG | + | chr3.3:82291793-82291812 | MS.gene020463:CDS | 35.0% |
| AAGCACTTACTATGTTGTGC+TGG | + | chr3.3:82291608-82291627 | MS.gene020463:CDS | 40.0% | |
| AGAGATGGGTCAAACTATAG+AGG | + | chr3.3:82291887-82291906 | MS.gene020463:CDS | 40.0% | |
| AGAGCAGAAAAGAAGAAACG+TGG | + | chr3.3:82291855-82291874 | MS.gene020463:CDS | 40.0% | |
| AGATGGGTCAAACTATAGAG+GGG | + | chr3.3:82291889-82291908 | MS.gene020463:CDS | 40.0% | |
| ATATTAGCCCTAGGTAACTC+CGG | + | chr3.3:82290427-82290446 | MS.gene020463:CDS | 40.0% | |
| ATGCGTCTCTATTTCATCCA+CGG | + | chr3.3:82290463-82290482 | MS.gene020463:CDS | 40.0% | |
| CACTTGTACTTTCTCTTTGG+GGG | + | chr3.3:82291796-82291815 | MS.gene020463:CDS | 40.0% | |
| GACGACTATCTATACGCATA+TGG | + | chr3.3:82290703-82290722 | MS.gene020463:CDS | 40.0% | |
| GAGATGGGTCAAACTATAGA+GGG | + | chr3.3:82291888-82291907 | MS.gene020463:CDS | 40.0% | |
| GTATAGATAGTCGTCAAGAC+CGG | - | chr3.3:82290698-82290717 | None:intergenic | 40.0% | |
| GTTGGATGTATGAGATTGTG+AGG | - | chr3.3:82290552-82290571 | None:intergenic | 40.0% | |
| TAGAAGAGAGTCTCCTTCAT+AGG | - | chr3.3:82291446-82291465 | None:intergenic | 40.0% | |
| TGGATGTATGAGATTGTGAG+GGG | - | chr3.3:82290550-82290569 | None:intergenic | 40.0% | |
| TGTGCTTCATCGTTATTGTC+GGG | + | chr3.3:82291687-82291706 | MS.gene020463:CDS | 40.0% | |
| TTATAAACCAACTCAACCGC+AGG | - | chr3.3:82290985-82291004 | None:intergenic | 40.0% | |
| TTCTCCTAGCCCAAAATTTC+TGG | - | chr3.3:82291589-82291608 | None:intergenic | 40.0% | |
| ! | AATGTGGCAAGCGTTTTTCT+TGG | + | chr3.3:82291644-82291663 | MS.gene020463:CDS | 40.0% |
| ! | ACGTTTCTTCTTTTCTGCTC+TGG | - | chr3.3:82291856-82291875 | None:intergenic | 40.0% |
| ! | ATGTGGCAAGCGTTTTTCTT+GGG | + | chr3.3:82291645-82291664 | MS.gene020463:CDS | 40.0% |
| ! | CAAGGGAAGCCAGAAATTTT+GGG | + | chr3.3:82291577-82291596 | MS.gene020463:CDS | 40.0% |
| ! | TGCTGTGTTGTTACCACTAA+CGG | + | chr3.3:82291719-82291738 | MS.gene020463:CDS | 40.0% |
| !! | GCCATTGTTTTGCTTACTGT+TGG | + | chr3.3:82290841-82290860 | MS.gene020463:CDS | 40.0% |
| !! | GGGTTTGTGTCCTATTTCTA+TGG | + | chr3.3:82291816-82291835 | MS.gene020463:CDS | 40.0% |
| !! | TCACAAGTGTGGTGTTGTAT+CGG | - | chr3.3:82291308-82291327 | None:intergenic | 40.0% |
| !!! | GTATGGATTTGTTTTGCCTG+CGG | + | chr3.3:82290966-82290985 | MS.gene020463:CDS | 40.0% |
| AATGAGCATCAAGGGGAAAC+CGG | - | chr3.3:82290527-82290546 | None:intergenic | 45.0% | |
| AGCATCTCAGCTTGGTTTCA+CGG | + | chr3.3:82290765-82290784 | MS.gene020463:CDS | 45.0% | |
| TATACGCATATGGCGTTGCT+CGG | + | chr3.3:82290713-82290732 | MS.gene020463:CDS | 45.0% | |
| ! | CCAAGGGAAGCCAGAAATTT+TGG | + | chr3.3:82291576-82291595 | MS.gene020463:CDS | 45.0% |
| ! | GAAGCCAGAAATTTTGGGCT+AGG | + | chr3.3:82291582-82291601 | MS.gene020463:CDS | 45.0% |
| ! | GCGTTTTTCTTGGGAGCTAT+TGG | + | chr3.3:82291654-82291673 | MS.gene020463:CDS | 45.0% |
| ! | GTTACCACTAACGGAAGTGT+TGG | + | chr3.3:82291728-82291747 | MS.gene020463:CDS | 45.0% |
| ! | GTTGCTGCTTCTGCATTGTA+TGG | + | chr3.3:82290949-82290968 | MS.gene020463:CDS | 45.0% |
| ! | GTTTTGCTTACTGTTGGAGC+TGG | + | chr3.3:82290847-82290866 | MS.gene020463:CDS | 45.0% |
| ! | TACTGTTGGAGCTGGTGTTT+TGG | + | chr3.3:82290855-82290874 | MS.gene020463:CDS | 45.0% |
| ! | TAGTTTTTCTGCAGGGGAGA+TGG | - | chr3.3:82290617-82290636 | None:intergenic | 45.0% |
| ! | TGTTTTGCAGAAACACCAGC+AGG | - | chr3.3:82290904-82290923 | None:intergenic | 45.0% |
| !! | CCAAAATTTCTGGCTTCCCT+TGG | - | chr3.3:82291579-82291598 | None:intergenic | 45.0% |
| AAGGCGGCTGCGAAGAAAAT+AGG | - | chr3.3:82290661-82290680 | None:intergenic | 50.0% | |
| ACTGCCAACACTTCCGTTAG+TGG | - | chr3.3:82291735-82291754 | None:intergenic | 50.0% | |
| CGAAACCTAGACCTAGACAC+CGG | - | chr3.3:82291376-82291395 | None:intergenic | 50.0% | |
| CGTCTCTATTTCATCCACGG+TGG | + | chr3.3:82290466-82290485 | MS.gene020463:CDS | 50.0% | |
| GAAACCTAGACCTAGACACC+GGG | - | chr3.3:82291375-82291394 | None:intergenic | 50.0% | |
| GCCACTCTCTTCTGTGTCAT+AGG | + | chr3.3:82291069-82291088 | MS.gene020463:CDS | 50.0% | |
| GCCTATGACACAGAAGAGAG+TGG | - | chr3.3:82291073-82291092 | None:intergenic | 50.0% | |
| GTGAGGGGAATGAGCATCAA+GGG | - | chr3.3:82290535-82290554 | None:intergenic | 50.0% | |
| TCACATGTTAGTGTCGTGCC+CGG | + | chr3.3:82291354-82291373 | MS.gene020463:intron | 50.0% | |
| TGAGGGGAATGAGCATCAAG+GGG | - | chr3.3:82290534-82290553 | None:intergenic | 50.0% | |
| TGTGAGGGGAATGAGCATCA+AGG | - | chr3.3:82290536-82290555 | None:intergenic | 50.0% | |
| ! | GTGACACCCCTTTTTCTGCT+TGG | - | chr3.3:82291779-82291798 | None:intergenic | 50.0% |
| ! | TGTTTTGCCTGCGGTTGAGT+TGG | + | chr3.3:82290975-82290994 | MS.gene020463:CDS | 50.0% |
| !! | TGTGGTGTTGTATCGGACAC+TGG | - | chr3.3:82291301-82291320 | None:intergenic | 50.0% |
| ACCGGTGAGGATTCCGACAA+AGG | - | chr3.3:82290680-82290699 | None:intergenic | 55.0% | |
| ACGAGTAGTGATCGTCCTGC+TGG | + | chr3.3:82290886-82290905 | MS.gene020463:CDS | 55.0% | |
| ACGCATTATGAGGGGACCAC+CGG | - | chr3.3:82290449-82290468 | None:intergenic | 55.0% | |
| CAATGCAGAAGCAGCAACCG+TGG | - | chr3.3:82290947-82290966 | None:intergenic | 55.0% | |
| GATAGTCGTCAAGACCGGTG+AGG | - | chr3.3:82290693-82290712 | None:intergenic | 55.0% | |
| GCCTTTGTCGGAATCCTCAC+CGG | + | chr3.3:82290676-82290695 | MS.gene020463:CDS | 55.0% | |
| GCGGCTGCGAAGAAAATAGG+TGG | - | chr3.3:82290658-82290677 | None:intergenic | 55.0% | |
| GGTGAGGATTCCGACAAAGG+CGG | - | chr3.3:82290677-82290696 | None:intergenic | 55.0% | |
| TTAGCCCTAGGTAACTCCGG+TGG | + | chr3.3:82290430-82290449 | MS.gene020463:CDS | 55.0% | |
| TTCTGCAGGGGAGATGGAGA+TGG | - | chr3.3:82290611-82290630 | None:intergenic | 55.0% | |
| TTCTTCGCAGCCGCCTTTGT+CGG | + | chr3.3:82290664-82290683 | MS.gene020463:CDS | 55.0% | |
| !! | ATGGAGATGGTGGTGGATGG+TGG | - | chr3.3:82290598-82290617 | None:intergenic | 55.0% |
| !! | GAGATGGAGATGGTGGTGGA+TGG | - | chr3.3:82290601-82290620 | None:intergenic | 55.0% |
| AGGGGAAACCGGCGGTTTCA+AGG | - | chr3.3:82290516-82290535 | None:intergenic | 60.0% | |
| GAAACCGGCGGTTTCAAGGC+AGG | - | chr3.3:82290512-82290531 | None:intergenic | 60.0% | |
| GAGCATCAAGGGGAAACCGG+CGG | - | chr3.3:82290524-82290543 | None:intergenic | 60.0% | |
| GGGACCACCGGAGTTACCTA+GGG | - | chr3.3:82290437-82290456 | None:intergenic | 60.0% | |
| TAGTGTCGTGCCCGGTGTCT+AGG | + | chr3.3:82291362-82291381 | MS.gene020463:intron | 60.0% | |
| TGCAGGGGAGATGGAGATGG+TGG | - | chr3.3:82290608-82290627 | None:intergenic | 60.0% | |
| ! | AGGGGAGATGGAGATGGTGG+TGG | - | chr3.3:82290605-82290624 | None:intergenic | 60.0% |
| !! | GAGATGGTGGTGGATGGTGG+AGG | - | chr3.3:82290595-82290614 | None:intergenic | 60.0% |
| !! | TGGATGGTGGAGGATGGTGG+CGG | - | chr3.3:82290585-82290604 | None:intergenic | 60.0% |
| !! | TGGTGGATGGTGGAGGATGG+TGG | - | chr3.3:82290588-82290607 | None:intergenic | 60.0% |
| !! | TGGTGGTGGATGGTGGAGGA+TGG | - | chr3.3:82290591-82290610 | None:intergenic | 60.0% |
| ACCGGCGGTTTCAAGGCAGG+CGG | - | chr3.3:82290509-82290528 | None:intergenic | 65.0% | |
| AGGCGGAGAGCCAGACACGT+TGG | - | chr3.3:82290492-82290511 | None:intergenic | 65.0% | |
| CGTGCCCGGTGTCTAGGTCT+AGG | + | chr3.3:82291368-82291387 | MS.gene020463:intron | 65.0% | |
| GGGGACCACCGGAGTTACCT+AGG | - | chr3.3:82290438-82290457 | None:intergenic | 65.0% | |
| TCCACGGTGGCCAACGTGTC+TGG | + | chr3.3:82290479-82290498 | MS.gene020463:CDS | 65.0% | |
| TCCGCCTGCCTTGAAACCGC+CGG | + | chr3.3:82290505-82290524 | MS.gene020463:CDS | 65.0% | |
| !! | GTGGAGGATGGTGGCGGTGA+CGG | - | chr3.3:82290579-82290598 | None:intergenic | 65.0% |
| GCCAGACACGTTGGCCACCG+TGG | - | chr3.3:82290483-82290502 | None:intergenic | 70.0% | |
| ! | GGTGGCGGTGACGGCAGCGT+TGG | - | chr3.3:82290570-82290589 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 82290358 | 82291926 | 82290358 | ID=MS.gene020463 |
| chr3.3 | mRNA | 82290358 | 82291926 | 82290358 | ID=MS.gene020463.t1;Parent=MS.gene020463 |
| chr3.3 | exon | 82290358 | 82291116 | 82290358 | ID=MS.gene020463.t1.exon1;Parent=MS.gene020463.t1 |
| chr3.3 | CDS | 82290358 | 82291116 | 82290358 | ID=cds.MS.gene020463.t1;Parent=MS.gene020463.t1 |
| chr3.3 | exon | 82291570 | 82291926 | 82291570 | ID=MS.gene020463.t1.exon2;Parent=MS.gene020463.t1 |
| chr3.3 | CDS | 82291570 | 82291926 | 82291570 | ID=cds.MS.gene020463.t1;Parent=MS.gene020463.t1 |
| Gene Sequence |
| Protein sequence |
