Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38573.t1 | XP_003602860.2 | 95.3 | 274 | 13 | 0 | 1 | 274 | 98 | 371 | 2.70E-137 | 498 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38573.t1 | Q9FZ96 | 64.8 | 253 | 88 | 1 | 1 | 252 | 81 | 333 | 6.4e-87 | 322.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38573.t1 | G7J4H5 | 95.3 | 274 | 13 | 0 | 1 | 274 | 98 | 371 | 2.0e-137 | 498.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38573 | MS.gene020463 | PPI |
| MS.gene38573 | MS.gene38616 | PPI |
| MS.gene64133 | MS.gene38573 | PPI |
| MS.gene38573 | MS.gene043890 | PPI |
| MS.gene38573 | MS.gene010157 | PPI |
| MS.gene013113 | MS.gene38573 | PPI |
| MS.gene38616 | MS.gene38573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38573.t1 | MTR_3g099740 | 95.255 | 274 | 13 | 0 | 1 | 274 | 98 | 371 | 0.0 | 526 |
| MS.gene38573.t1 | MTR_3g099750 | 90.511 | 274 | 26 | 0 | 1 | 274 | 97 | 370 | 0.0 | 506 |
| MS.gene38573.t1 | MTR_5g065080 | 68.750 | 272 | 81 | 2 | 1 | 271 | 95 | 363 | 2.54e-132 | 379 |
| MS.gene38573.t1 | MTR_2g437590 | 39.615 | 260 | 153 | 2 | 3 | 261 | 139 | 395 | 3.04e-58 | 191 |
| MS.gene38573.t1 | MTR_3g058660 | 38.174 | 241 | 149 | 0 | 7 | 247 | 93 | 333 | 4.45e-55 | 182 |
| MS.gene38573.t1 | MTR_2g015470 | 33.198 | 247 | 165 | 0 | 22 | 268 | 133 | 379 | 2.56e-51 | 172 |
| MS.gene38573.t1 | MTR_8g024620 | 37.449 | 243 | 152 | 0 | 5 | 247 | 109 | 351 | 4.18e-47 | 161 |
| MS.gene38573.t1 | MTR_8g024620 | 37.449 | 243 | 152 | 0 | 5 | 247 | 120 | 362 | 4.39e-47 | 161 |
| MS.gene38573.t1 | MTR_8g024620 | 37.449 | 243 | 152 | 0 | 5 | 247 | 121 | 363 | 4.49e-47 | 161 |
| MS.gene38573.t1 | MTR_2g437580 | 35.361 | 263 | 166 | 2 | 2 | 263 | 119 | 378 | 1.87e-46 | 160 |
| MS.gene38573.t1 | MTR_4g098900 | 32.567 | 261 | 155 | 4 | 11 | 270 | 119 | 359 | 6.16e-43 | 151 |
| MS.gene38573.t1 | MTR_7g080750 | 34.008 | 247 | 146 | 2 | 12 | 254 | 107 | 340 | 2.93e-40 | 143 |
| MS.gene38573.t1 | MTR_6g082540 | 33.333 | 153 | 102 | 0 | 100 | 252 | 4 | 156 | 1.25e-25 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38573.t1 | AT1G28220 | 62.791 | 258 | 94 | 1 | 1 | 258 | 75 | 330 | 1.87e-116 | 338 |
| MS.gene38573.t1 | AT1G28230 | 63.953 | 258 | 92 | 1 | 1 | 257 | 81 | 338 | 1.79e-115 | 336 |
| MS.gene38573.t1 | AT2G33750 | 60.150 | 266 | 103 | 1 | 1 | 266 | 77 | 339 | 3.08e-113 | 330 |
| MS.gene38573.t1 | AT2G33750 | 57.762 | 277 | 103 | 2 | 1 | 266 | 77 | 350 | 9.36e-110 | 322 |
| MS.gene38573.t1 | AT4G18205 | 39.474 | 266 | 154 | 2 | 2 | 263 | 106 | 368 | 1.51e-52 | 176 |
| MS.gene38573.t1 | AT4G18220 | 37.652 | 247 | 154 | 0 | 12 | 258 | 123 | 369 | 1.16e-51 | 174 |
| MS.gene38573.t1 | AT4G18210 | 36.667 | 240 | 152 | 0 | 19 | 258 | 130 | 369 | 1.42e-48 | 166 |
| MS.gene38573.t1 | AT4G18197 | 38.610 | 259 | 152 | 2 | 2 | 256 | 109 | 364 | 3.09e-46 | 159 |
| MS.gene38573.t1 | AT4G18195 | 38.618 | 246 | 148 | 1 | 13 | 258 | 127 | 369 | 1.57e-45 | 157 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 44 | 300 | 4.25e-45 | 154 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 44 | 300 | 4.25e-45 | 154 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 44 | 300 | 4.25e-45 | 154 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 44 | 300 | 4.25e-45 | 154 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 44 | 300 | 4.25e-45 | 154 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 108 | 364 | 2.31e-44 | 154 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 108 | 364 | 2.31e-44 | 154 |
| MS.gene38573.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 11 | 263 | 120 | 376 | 3.09e-44 | 154 |
| MS.gene38573.t1 | AT1G30840 | 34.432 | 273 | 161 | 3 | 9 | 266 | 101 | 370 | 2.31e-42 | 149 |
| MS.gene38573.t1 | AT1G30840 | 34.432 | 273 | 161 | 3 | 9 | 266 | 101 | 370 | 2.31e-42 | 149 |
| MS.gene38573.t1 | AT4G18190 | 33.992 | 253 | 163 | 1 | 12 | 260 | 116 | 368 | 8.40e-36 | 132 |
| MS.gene38573.t1 | AT2G24220 | 38.696 | 230 | 141 | 0 | 12 | 241 | 112 | 341 | 2.51e-35 | 130 |
| MS.gene38573.t1 | AT2G24220 | 38.696 | 230 | 141 | 0 | 12 | 241 | 130 | 359 | 3.40e-35 | 130 |
| MS.gene38573.t1 | AT4G08700 | 29.600 | 250 | 172 | 1 | 12 | 257 | 110 | 359 | 1.10e-33 | 125 |
| MS.gene38573.t1 | AT5G41160 | 28.800 | 250 | 174 | 1 | 12 | 257 | 113 | 362 | 1.55e-29 | 114 |
| MS.gene38573.t1 | AT1G19770 | 26.190 | 252 | 174 | 3 | 12 | 252 | 140 | 390 | 1.10e-21 | 94.0 |
| MS.gene38573.t1 | AT1G57943 | 26.718 | 262 | 179 | 4 | 5 | 256 | 126 | 384 | 2.93e-15 | 75.5 |
| MS.gene38573.t1 | AT1G57943 | 26.718 | 262 | 179 | 4 | 5 | 256 | 127 | 385 | 2.99e-15 | 75.5 |
| MS.gene38573.t1 | AT1G47603 | 27.984 | 243 | 165 | 5 | 21 | 255 | 143 | 383 | 5.56e-14 | 71.6 |
| MS.gene38573.t1 | AT1G57980 | 28.958 | 259 | 162 | 5 | 12 | 256 | 131 | 381 | 8.13e-14 | 71.2 |
| MS.gene38573.t1 | AT1G57990 | 26.692 | 266 | 177 | 6 | 12 | 267 | 127 | 384 | 5.93e-13 | 68.6 |
Find 51 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGGAAGCCAGAAATTT+TGG | 0.087944 | 3.2:+82787933 | MS.gene38573:CDS |
| TTCTCCTAGCCCAAAATTTC+TGG | 0.134659 | 3.2:-82787943 | None:intergenic |
| GTCACTTGTACTTTCTCTTT+GGG | 0.234346 | 3.2:+82788151 | MS.gene38573:CDS |
| TGTCACTTGTACTTTCTCTT+TGG | 0.252362 | 3.2:+82788150 | MS.gene38573:CDS |
| GGGTTTGTGTCCTATTTCTA+TGG | 0.257650 | 3.2:+82788173 | MS.gene38573:CDS |
| CATCACTTATTCTCTTGTTA+TGG | 0.272446 | 3.2:+82787377 | MS.gene38573:CDS |
| TACTGTTGGAGCTGGTGTTT+TGG | 0.297117 | 3.2:+82787212 | MS.gene38573:CDS |
| AAGCTGAGATGCTATAATTA+AGG | 0.307702 | 3.2:-82787112 | None:intergenic |
| TTTGATCTCTCCATAGAAAT+AGG | 0.310546 | 3.2:-82788183 | None:intergenic |
| TTCTTCGCAGCCGCCTTTGT+CGG | 0.322986 | 3.2:+82787021 | MS.gene38573:CDS |
| ATTAAGGAAGAAGTGGAAAC+TGG | 0.360569 | 3.2:-82787096 | None:intergenic |
| GCCACTCTCTTCTGTGTCAT+AGG | 0.361474 | 3.2:+82787426 | MS.gene38573:CDS |
| AAGGCGGCTGCGAAGAAAAT+AGG | 0.380819 | 3.2:-82787015 | None:intergenic |
| GTTGCTGCTTCTGCATTGTA+TGG | 0.384050 | 3.2:+82787306 | MS.gene38573:CDS |
| TTGTGCTTCATCGTTATTGT+CGG | 0.390415 | 3.2:+82788043 | MS.gene38573:CDS |
| TCTGCAAAACAATATGCAAT+TGG | 0.407462 | 3.2:+82787270 | MS.gene38573:CDS |
| ACTGCCAACACTTCCGTTAG+TGG | 0.430603 | 3.2:-82788089 | None:intergenic |
| CCAAAATTTCTGGCTTCCCT+TGG | 0.437025 | 3.2:-82787933 | None:intergenic |
| GAAGAAAATAGGTGGTTTCA+TGG | 0.464745 | 3.2:-82787004 | None:intergenic |
| TGTGCTTCATCGTTATTGTC+GGG | 0.468631 | 3.2:+82788044 | MS.gene38573:CDS |
| GACGACTATCTCTACGCATA+TGG | 0.472095 | 3.2:+82787060 | MS.gene38573:CDS |
| AGAGATGGGTCAAACTATAG+AGG | 0.476548 | 3.2:+82788244 | MS.gene38573:CDS |
| TCACTTGTACTTTCTCTTTG+GGG | 0.497301 | 3.2:+82788152 | MS.gene38573:CDS |
| TGCTATAATTAAGGAAGAAG+TGG | 0.500757 | 3.2:-82787103 | None:intergenic |
| TCTACGCATATGGCGTTGCT+CGG | 0.506754 | 3.2:+82787070 | MS.gene38573:CDS |
| GCCTTTGTCGGAATCCTCAC+CGG | 0.517140 | 3.2:+82787033 | MS.gene38573:CDS |
| TGAAATTGTAGGTGATTCCA+AGG | 0.522629 | 3.2:+82787916 | MS.gene38573:intron |
| CACTTGTACTTTCTCTTTGG+GGG | 0.524039 | 3.2:+82788153 | MS.gene38573:CDS |
| AAGCACTTACTATGTTGTGC+TGG | 0.526613 | 3.2:+82787965 | MS.gene38573:CDS |
| ACGAGTAGTGATCGTCCTGC+TGG | 0.534270 | 3.2:+82787243 | MS.gene38573:CDS |
| GAGATGGGTCAAACTATAGA+GGG | 0.546898 | 3.2:+82788245 | MS.gene38573:CDS |
| TGCTGTGTTGTTACCACTAA+CGG | 0.559279 | 3.2:+82788076 | MS.gene38573:CDS |
| TTAATTATAGCATCTCAGCT+TGG | 0.560458 | 3.2:+82787114 | MS.gene38573:CDS |
| CGACATTCCAATCACGGAGC+AGG | 0.570220 | 3.2:-82788272 | None:intergenic |
| ACCGGTGAGGATTCCGACAA+AGG | 0.576753 | 3.2:-82787034 | None:intergenic |
| ACGTGGTTTAGAAATAGAGA+TGG | 0.580816 | 3.2:+82788229 | MS.gene38573:CDS |
| GTAGAGATAGTCGTCAAGAC+CGG | 0.588438 | 3.2:-82787052 | None:intergenic |
| GTTACCACTAACGGAAGTGT+TGG | 0.591263 | 3.2:+82788085 | MS.gene38573:CDS |
| CGTGGTTTAGAAATAGAGAT+GGG | 0.596725 | 3.2:+82788230 | MS.gene38573:CDS |
| TTATAAACCAACTCAACCGC+AGG | 0.602436 | 3.2:-82787339 | None:intergenic |
| ATAACAAGAGAATAAGTGAT+GGG | 0.603082 | 3.2:-82787375 | None:intergenic |
| CATAACAAGAGAATAAGTGA+TGG | 0.603170 | 3.2:-82787376 | None:intergenic |
| TCCAACAGTAAGCAAAACAA+TGG | 0.645563 | 3.2:-82787199 | None:intergenic |
| CAATGCAGAAGCAGCAACCG+TGG | 0.651015 | 3.2:-82787301 | None:intergenic |
| GAAATTGTAGGTGATTCCAA+GGG | 0.661077 | 3.2:+82787917 | MS.gene38573:intron |
| GCCTATGACACAGAAGAGAG+TGG | 0.662127 | 3.2:-82787427 | None:intergenic |
| GGTGAGGATTCCGACAAAGG+CGG | 0.671382 | 3.2:-82787031 | None:intergenic |
| AGATGGGTCAAACTATAGAG+GGG | 0.703352 | 3.2:+82788246 | MS.gene38573:CDS |
| GCGGCTGCGAAGAAAATAGG+TGG | 0.707986 | 3.2:-82787012 | None:intergenic |
| AGAGCAGAAAAGAAGAAACG+TGG | 0.731923 | 3.2:+82788212 | MS.gene38573:CDS |
| GATAGTCGTCAAGACCGGTG+AGG | 0.753396 | 3.2:-82787047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCATCTATTTTGTTT+GGG | + | chr3.2:82787584-82787603 | MS.gene38573:intron | 15.0% |
| !! | AACAAAAATCATTTAGTGTT+TGG | - | chr3.2:82787840-82787859 | None:intergenic | 20.0% |
| !! | AATTAAAAAAATCACAAGTG+TGG | - | chr3.2:82787676-82787695 | None:intergenic | 20.0% |
| !! | AGGTAAGATTACATTAATTA+AGG | + | chr3.2:82787472-82787491 | MS.gene38573:intron | 20.0% |
| !! | TTATGAAATTCTATGTTGTA+TGG | + | chr3.2:82787610-82787629 | MS.gene38573:intron | 20.0% |
| !!! | AATAATTGTGATTGAGATTT+TGG | + | chr3.2:82787890-82787909 | MS.gene38573:intron | 20.0% |
| !!! | ATTAATTAAGGTTGTGTTTT+TGG | + | chr3.2:82787484-82787503 | MS.gene38573:intron | 20.0% |
| !!! | CTATTTTCATCTATTTTGTT+TGG | + | chr3.2:82787583-82787602 | MS.gene38573:intron | 20.0% |
| ! | AAAAATTCCAAGCAGAAAAA+GGG | + | chr3.2:82788126-82788145 | MS.gene38573:CDS | 25.0% |
| ! | ATAACAAGAGAATAAGTGAT+GGG | - | chr3.2:82787378-82787397 | None:intergenic | 25.0% |
| !! | AGAGATTGGATTTTATTAAG+TGG | + | chr3.2:82787760-82787779 | MS.gene38573:intron | 25.0% |
| !! | GATTGCAAACAATGATTTTA+AGG | + | chr3.2:82787452-82787471 | MS.gene38573:CDS | 25.0% |
| !!! | GATTTTGGATTTGAAATTGT+AGG | + | chr3.2:82787905-82787924 | MS.gene38573:intron | 25.0% |
| AAAATTCCAAGCAGAAAAAG+GGG | + | chr3.2:82788127-82788146 | MS.gene38573:CDS | 30.0% | |
| AAGCTGAGATGCTATAATTA+AGG | - | chr3.2:82787115-82787134 | None:intergenic | 30.0% | |
| CATAACAAGAGAATAAGTGA+TGG | - | chr3.2:82787379-82787398 | None:intergenic | 30.0% | |
| CATCACTTATTCTCTTGTTA+TGG | + | chr3.2:82787377-82787396 | MS.gene38573:CDS | 30.0% | |
| GAAAAATTCCAAGCAGAAAA+AGG | + | chr3.2:82788125-82788144 | MS.gene38573:CDS | 30.0% | |
| TCTGCAAAACAATATGCAAT+TGG | + | chr3.2:82787270-82787289 | MS.gene38573:CDS | 30.0% | |
| TGCTATAATTAAGGAAGAAG+TGG | - | chr3.2:82787106-82787125 | None:intergenic | 30.0% | |
| TTAATTATAGCATCTCAGCT+TGG | + | chr3.2:82787114-82787133 | MS.gene38573:CDS | 30.0% | |
| TTTGATCTCTCCATAGAAAT+AGG | - | chr3.2:82788186-82788205 | None:intergenic | 30.0% | |
| !!! | TGCAATTGGTTTTTTAACCA+CGG | + | chr3.2:82787284-82787303 | MS.gene38573:CDS | 30.0% |
| ACGTGGTTTAGAAATAGAGA+TGG | + | chr3.2:82788229-82788248 | MS.gene38573:CDS | 35.0% | |
| ATTAAGGAAGAAGTGGAAAC+TGG | - | chr3.2:82787099-82787118 | None:intergenic | 35.0% | |
| CGTGGTTTAGAAATAGAGAT+GGG | + | chr3.2:82788230-82788249 | MS.gene38573:CDS | 35.0% | |
| GAAATTGTAGGTGATTCCAA+GGG | + | chr3.2:82787917-82787936 | MS.gene38573:intron | 35.0% | |
| GGTTTCGTACAATTAGAGAT+TGG | + | chr3.2:82787746-82787765 | MS.gene38573:intron | 35.0% | |
| GTCACTTGTACTTTCTCTTT+GGG | + | chr3.2:82788151-82788170 | MS.gene38573:CDS | 35.0% | |
| TAGAGTAGTTGAACCTATGA+AGG | + | chr3.2:82787787-82787806 | MS.gene38573:intron | 35.0% | |
| TCACTTGTACTTTCTCTTTG+GGG | + | chr3.2:82788152-82788171 | MS.gene38573:CDS | 35.0% | |
| TCCAACAGTAAGCAAAACAA+TGG | - | chr3.2:82787202-82787221 | None:intergenic | 35.0% | |
| TGAAATTGTAGGTGATTCCA+AGG | + | chr3.2:82787916-82787935 | MS.gene38573:intron | 35.0% | |
| TTGTGCTTCATCGTTATTGT+CGG | + | chr3.2:82788043-82788062 | MS.gene38573:CDS | 35.0% | |
| ! | TGGCTTTTAATGCGTTAATG+TGG | + | chr3.2:82787985-82788004 | MS.gene38573:CDS | 35.0% |
| ! | TGTCACTTGTACTTTCTCTT+TGG | + | chr3.2:82788150-82788169 | MS.gene38573:CDS | 35.0% |
| AAGCACTTACTATGTTGTGC+TGG | + | chr3.2:82787965-82787984 | MS.gene38573:CDS | 40.0% | |
| AGAGATGGGTCAAACTATAG+AGG | + | chr3.2:82788244-82788263 | MS.gene38573:CDS | 40.0% | |
| AGAGCAGAAAAGAAGAAACG+TGG | + | chr3.2:82788212-82788231 | MS.gene38573:CDS | 40.0% | |
| AGATGGGTCAAACTATAGAG+GGG | + | chr3.2:82788246-82788265 | MS.gene38573:CDS | 40.0% | |
| CACTTGTACTTTCTCTTTGG+GGG | + | chr3.2:82788153-82788172 | MS.gene38573:CDS | 40.0% | |
| GAGATGGGTCAAACTATAGA+GGG | + | chr3.2:82788245-82788264 | MS.gene38573:CDS | 40.0% | |
| TAGAAGAGAGTCTCCTTCAT+AGG | - | chr3.2:82787803-82787822 | None:intergenic | 40.0% | |
| TGTGCTTCATCGTTATTGTC+GGG | + | chr3.2:82788044-82788063 | MS.gene38573:CDS | 40.0% | |
| TTATAAACCAACTCAACCGC+AGG | - | chr3.2:82787342-82787361 | None:intergenic | 40.0% | |
| TTCTCCTAGCCCAAAATTTC+TGG | - | chr3.2:82787946-82787965 | None:intergenic | 40.0% | |
| ! | AATGTGGCAAGCGTTTTTCT+TGG | + | chr3.2:82788001-82788020 | MS.gene38573:CDS | 40.0% |
| ! | ACGTTTCTTCTTTTCTGCTC+TGG | - | chr3.2:82788213-82788232 | None:intergenic | 40.0% |
| ! | ATGTGGCAAGCGTTTTTCTT+GGG | + | chr3.2:82788002-82788021 | MS.gene38573:CDS | 40.0% |
| ! | CAAGGGAAGCCAGAAATTTT+GGG | + | chr3.2:82787934-82787953 | MS.gene38573:CDS | 40.0% |
| ! | TGCTGTGTTGTTACCACTAA+CGG | + | chr3.2:82788076-82788095 | MS.gene38573:CDS | 40.0% |
| !! | GCCATTGTTTTGCTTACTGT+TGG | + | chr3.2:82787198-82787217 | MS.gene38573:CDS | 40.0% |
| !! | GGGTTTGTGTCCTATTTCTA+TGG | + | chr3.2:82788173-82788192 | MS.gene38573:CDS | 40.0% |
| !! | TCACAAGTGTGGTGTTGTAT+CGG | - | chr3.2:82787665-82787684 | None:intergenic | 40.0% |
| !!! | GTATGGATTTGTTTTGCCTG+CGG | + | chr3.2:82787323-82787342 | MS.gene38573:CDS | 40.0% |
| GACGACTATCTCTACGCATA+TGG | + | chr3.2:82787060-82787079 | MS.gene38573:CDS | 45.0% | |
| GTAGAGATAGTCGTCAAGAC+CGG | - | chr3.2:82787055-82787074 | None:intergenic | 45.0% | |
| ! | CCAAGGGAAGCCAGAAATTT+TGG | + | chr3.2:82787933-82787952 | MS.gene38573:CDS | 45.0% |
| ! | GAAGCCAGAAATTTTGGGCT+AGG | + | chr3.2:82787939-82787958 | MS.gene38573:CDS | 45.0% |
| ! | GCGTTTTTCTTGGGAGCTAT+TGG | + | chr3.2:82788011-82788030 | MS.gene38573:CDS | 45.0% |
| ! | GTTACCACTAACGGAAGTGT+TGG | + | chr3.2:82788085-82788104 | MS.gene38573:CDS | 45.0% |
| ! | GTTGCTGCTTCTGCATTGTA+TGG | + | chr3.2:82787306-82787325 | MS.gene38573:CDS | 45.0% |
| ! | GTTTTGCTTACTGTTGGAGC+TGG | + | chr3.2:82787204-82787223 | MS.gene38573:CDS | 45.0% |
| ! | TACTGTTGGAGCTGGTGTTT+TGG | + | chr3.2:82787212-82787231 | MS.gene38573:CDS | 45.0% |
| ! | TGTTTTGCAGAAACACCAGC+AGG | - | chr3.2:82787261-82787280 | None:intergenic | 45.0% |
| !! | CCAAAATTTCTGGCTTCCCT+TGG | - | chr3.2:82787936-82787955 | None:intergenic | 45.0% |
| AAGGCGGCTGCGAAGAAAAT+AGG | - | chr3.2:82787018-82787037 | None:intergenic | 50.0% | |
| ACTGCCAACACTTCCGTTAG+TGG | - | chr3.2:82788092-82788111 | None:intergenic | 50.0% | |
| CGAAACCTAGACCTAGACAC+CGG | - | chr3.2:82787733-82787752 | None:intergenic | 50.0% | |
| GAAACCTAGACCTAGACACC+GGG | - | chr3.2:82787732-82787751 | None:intergenic | 50.0% | |
| GCCACTCTCTTCTGTGTCAT+AGG | + | chr3.2:82787426-82787445 | MS.gene38573:CDS | 50.0% | |
| GCCTATGACACAGAAGAGAG+TGG | - | chr3.2:82787430-82787449 | None:intergenic | 50.0% | |
| TCACATGTTAGTGTCGTGCC+CGG | + | chr3.2:82787711-82787730 | MS.gene38573:intron | 50.0% | |
| TCTACGCATATGGCGTTGCT+CGG | + | chr3.2:82787070-82787089 | MS.gene38573:CDS | 50.0% | |
| ! | GTGACACCCCTTTTTCTGCT+TGG | - | chr3.2:82788136-82788155 | None:intergenic | 50.0% |
| ! | TGTTTTGCCTGCGGTTGAGT+TGG | + | chr3.2:82787332-82787351 | MS.gene38573:CDS | 50.0% |
| !! | TGTGGTGTTGTATCGGACAC+TGG | - | chr3.2:82787658-82787677 | None:intergenic | 50.0% |
| ACCGGTGAGGATTCCGACAA+AGG | - | chr3.2:82787037-82787056 | None:intergenic | 55.0% | |
| ACGAGTAGTGATCGTCCTGC+TGG | + | chr3.2:82787243-82787262 | MS.gene38573:CDS | 55.0% | |
| CAATGCAGAAGCAGCAACCG+TGG | - | chr3.2:82787304-82787323 | None:intergenic | 55.0% | |
| GATAGTCGTCAAGACCGGTG+AGG | - | chr3.2:82787050-82787069 | None:intergenic | 55.0% | |
| GCCTTTGTCGGAATCCTCAC+CGG | + | chr3.2:82787033-82787052 | MS.gene38573:CDS | 55.0% | |
| GCGGCTGCGAAGAAAATAGG+TGG | - | chr3.2:82787015-82787034 | None:intergenic | 55.0% | |
| GGTGAGGATTCCGACAAAGG+CGG | - | chr3.2:82787034-82787053 | None:intergenic | 55.0% | |
| TTCTTCGCAGCCGCCTTTGT+CGG | + | chr3.2:82787021-82787040 | MS.gene38573:CDS | 55.0% | |
| TAGTGTCGTGCCCGGTGTCT+AGG | + | chr3.2:82787719-82787738 | MS.gene38573:intron | 60.0% | |
| CGTGCCCGGTGTCTAGGTCT+AGG | + | chr3.2:82787725-82787744 | MS.gene38573:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82787006 | 82788283 | 82787006 | ID=MS.gene38573 |
| chr3.2 | mRNA | 82787006 | 82788283 | 82787006 | ID=MS.gene38573.t1;Parent=MS.gene38573 |
| chr3.2 | exon | 82787006 | 82787473 | 82787006 | ID=MS.gene38573.t1.exon1;Parent=MS.gene38573.t1 |
| chr3.2 | CDS | 82787006 | 82787473 | 82787006 | ID=cds.MS.gene38573.t1;Parent=MS.gene38573.t1 |
| chr3.2 | exon | 82787927 | 82788283 | 82787927 | ID=MS.gene38573.t1.exon2;Parent=MS.gene38573.t1 |
| chr3.2 | CDS | 82787927 | 82788283 | 82787927 | ID=cds.MS.gene38573.t1;Parent=MS.gene38573.t1 |
| Gene Sequence |
| Protein sequence |
