Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38616.t1 | XP_003602860.2 | 92.7 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 1.80E-184 | 655.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38616.t1 | Q9FZ95 | 57.9 | 354 | 135 | 2 | 13 | 366 | 1 | 340 | 2.8e-109 | 396.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38616.t1 | G7J4H5 | 92.7 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 1.3e-184 | 655.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38573 | MS.gene38616 | PPI |
| MS.gene38616 | MS.gene020463 | PPI |
| MS.gene64133 | MS.gene38616 | PPI |
| MS.gene38616 | MS.gene043890 | PPI |
| MS.gene38616 | MS.gene010157 | PPI |
| MS.gene013113 | MS.gene38616 | PPI |
| MS.gene38616 | MS.gene38573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38616.t1 | MTR_3g099740 | 92.742 | 372 | 25 | 2 | 1 | 371 | 1 | 371 | 0.0 | 692 |
| MS.gene38616.t1 | MTR_3g099750 | 87.871 | 371 | 44 | 1 | 1 | 371 | 1 | 370 | 0.0 | 665 |
| MS.gene38616.t1 | MTR_5g065080 | 63.315 | 368 | 120 | 5 | 2 | 368 | 10 | 363 | 2.97e-157 | 446 |
| MS.gene38616.t1 | MTR_2g437590 | 37.644 | 348 | 195 | 5 | 14 | 358 | 67 | 395 | 8.67e-72 | 230 |
| MS.gene38616.t1 | MTR_3g058660 | 32.749 | 342 | 220 | 2 | 3 | 344 | 2 | 333 | 1.34e-62 | 204 |
| MS.gene38616.t1 | MTR_2g015470 | 31.429 | 350 | 228 | 3 | 16 | 365 | 42 | 379 | 3.44e-60 | 199 |
| MS.gene38616.t1 | MTR_2g437580 | 33.702 | 362 | 209 | 5 | 1 | 354 | 34 | 372 | 2.91e-55 | 186 |
| MS.gene38616.t1 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 43 | 351 | 6.04e-52 | 177 |
| MS.gene38616.t1 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 54 | 362 | 9.99e-52 | 176 |
| MS.gene38616.t1 | MTR_8g024620 | 32.622 | 328 | 202 | 2 | 17 | 344 | 55 | 363 | 1.02e-51 | 176 |
| MS.gene38616.t1 | MTR_7g080750 | 32.000 | 350 | 200 | 6 | 11 | 351 | 20 | 340 | 1.32e-50 | 173 |
| MS.gene38616.t1 | MTR_4g098900 | 30.836 | 347 | 205 | 8 | 25 | 367 | 44 | 359 | 1.91e-50 | 174 |
| MS.gene38616.t1 | MTR_6g082540 | 33.333 | 153 | 102 | 0 | 197 | 349 | 4 | 156 | 5.02e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38616.t1 | AT1G28220 | 59.475 | 343 | 126 | 3 | 13 | 355 | 1 | 330 | 1.84e-145 | 416 |
| MS.gene38616.t1 | AT2G33750 | 55.398 | 352 | 143 | 2 | 12 | 363 | 2 | 339 | 6.77e-134 | 386 |
| MS.gene38616.t1 | AT1G28230 | 58.601 | 343 | 136 | 2 | 13 | 354 | 1 | 338 | 2.04e-132 | 383 |
| MS.gene38616.t1 | AT2G33750 | 53.719 | 363 | 143 | 3 | 12 | 363 | 2 | 350 | 2.46e-130 | 378 |
| MS.gene38616.t1 | AT4G18205 | 36.585 | 328 | 184 | 5 | 37 | 360 | 61 | 368 | 2.03e-57 | 191 |
| MS.gene38616.t1 | AT4G18220 | 33.537 | 328 | 203 | 2 | 28 | 355 | 57 | 369 | 2.61e-57 | 191 |
| MS.gene38616.t1 | AT4G18210 | 30.532 | 357 | 231 | 4 | 1 | 355 | 28 | 369 | 9.17e-53 | 180 |
| MS.gene38616.t1 | AT1G30840 | 32.320 | 362 | 212 | 5 | 17 | 363 | 27 | 370 | 4.52e-52 | 177 |
| MS.gene38616.t1 | AT1G30840 | 32.320 | 362 | 212 | 5 | 17 | 363 | 27 | 370 | 4.52e-52 | 177 |
| MS.gene38616.t1 | AT4G18197 | 35.826 | 321 | 182 | 5 | 37 | 353 | 64 | 364 | 6.06e-51 | 175 |
| MS.gene38616.t1 | AT4G18195 | 31.921 | 354 | 224 | 5 | 3 | 355 | 32 | 369 | 1.60e-49 | 171 |
| MS.gene38616.t1 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 26 | 364 | 3.48e-45 | 159 |
| MS.gene38616.t1 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 26 | 364 | 3.48e-45 | 159 |
| MS.gene38616.t1 | AT1G44750 | 30.141 | 355 | 227 | 3 | 11 | 360 | 38 | 376 | 4.70e-45 | 159 |
| MS.gene38616.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene38616.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene38616.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene38616.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene38616.t1 | AT1G44750 | 33.074 | 257 | 168 | 1 | 108 | 360 | 44 | 300 | 6.56e-44 | 154 |
| MS.gene38616.t1 | AT4G18190 | 31.215 | 362 | 229 | 4 | 3 | 357 | 20 | 368 | 9.01e-43 | 153 |
| MS.gene38616.t1 | AT2G24220 | 34.967 | 306 | 178 | 3 | 34 | 338 | 56 | 341 | 1.34e-40 | 147 |
| MS.gene38616.t1 | AT2G24220 | 34.967 | 306 | 178 | 3 | 34 | 338 | 74 | 359 | 1.65e-40 | 147 |
| MS.gene38616.t1 | AT4G08700 | 27.350 | 351 | 228 | 4 | 12 | 354 | 28 | 359 | 1.28e-38 | 142 |
| MS.gene38616.t1 | AT5G41160 | 27.356 | 329 | 211 | 3 | 34 | 354 | 54 | 362 | 1.36e-34 | 131 |
| MS.gene38616.t1 | AT1G19770 | 27.389 | 314 | 206 | 5 | 47 | 349 | 88 | 390 | 9.22e-26 | 107 |
| MS.gene38616.t1 | AT1G57943 | 24.796 | 367 | 234 | 9 | 11 | 353 | 37 | 385 | 4.18e-19 | 88.6 |
| MS.gene38616.t1 | AT1G57943 | 24.796 | 367 | 234 | 9 | 11 | 353 | 36 | 384 | 4.23e-19 | 88.2 |
| MS.gene38616.t1 | AT1G57980 | 26.882 | 372 | 222 | 11 | 7 | 353 | 35 | 381 | 3.68e-17 | 82.8 |
| MS.gene38616.t1 | AT1G57990 | 25.199 | 377 | 237 | 13 | 10 | 364 | 31 | 384 | 4.98e-17 | 82.0 |
| MS.gene38616.t1 | AT1G47603 | 26.271 | 354 | 224 | 9 | 17 | 352 | 49 | 383 | 6.91e-17 | 81.6 |
Find 0 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCATCTATTTTGTTT+GGG | + | 23848:12301-12320 | MS.gene38616:intron | 15.0% |
| !! | AACAAAAATCATTTAGTGTT+TGG | - | 23848:12573-12592 | MS.gene38616:intergenic | 20.0% |
| !! | AATTAAAAAAATCACAAGTG+TGG | - | 23848:12409-12428 | MS.gene38616:intergenic | 20.0% |
| !! | AGGTAAGATTACATTAATTA+AGG | + | 23848:12189-12208 | MS.gene38616:intron | 20.0% |
| !! | TTATGAAATTCTATGTTGTA+TGG | + | 23848:12343-12362 | MS.gene38616:intron | 20.0% |
| !!! | AATAATTGTGATTGAGATTT+TGG | + | 23848:12623-12642 | MS.gene38616:intron | 20.0% |
| !!! | ATTAATTAAGGTTGTGTTTT+TGG | + | 23848:12201-12220 | MS.gene38616:intron | 20.0% |
| !!! | ATTATATTTAGTTTTTCTGC+AGG | - | 23848:11699-11718 | MS.gene38616:intergenic | 20.0% |
| !!! | CTATTTTCATCTATTTTGTT+TGG | + | 23848:12300-12319 | MS.gene38616:intron | 20.0% |
| !!! | TTATATTTAGTTTTTCTGCA+GGG | - | 23848:11698-11717 | MS.gene38616:intergenic | 20.0% |
| ! | AAAAATTCCAAGCAGAAAAA+GGG | + | 23848:12859-12878 | MS.gene38616:CDS | 25.0% |
| ! | ATAACAAGAGAATAAGTGAT+GGG | - | 23848:12095-12114 | MS.gene38616:intergenic | 25.0% |
| !! | AGAGATTGGATTTTATTAAG+TGG | + | 23848:12493-12512 | MS.gene38616:intron | 25.0% |
| !! | GATTGCAAACAATGATTTTA+AGG | + | 23848:12169-12188 | MS.gene38616:CDS | 25.0% |
| !!! | GATTTTGGATTTGAAATTGT+AGG | + | 23848:12638-12657 | MS.gene38616:intron | 25.0% |
| !!! | TATATTTAGTTTTTCTGCAG+GGG | - | 23848:11697-11716 | MS.gene38616:intergenic | 25.0% |
| AAAATTCCAAGCAGAAAAAG+GGG | + | 23848:12860-12879 | MS.gene38616:CDS | 30.0% | |
| AAGCTGAGATGCTATAATTA+AGG | - | 23848:11832-11851 | MS.gene38616:intergenic | 30.0% | |
| CATAACAAGAGAATAAGTGA+TGG | - | 23848:12096-12115 | MS.gene38616:intergenic | 30.0% | |
| CATCACTTATTCTCTTGTTA+TGG | + | 23848:12094-12113 | MS.gene38616:CDS | 30.0% | |
| GAAAAATTCCAAGCAGAAAA+AGG | + | 23848:12858-12877 | MS.gene38616:CDS | 30.0% | |
| TCTGCAAAACAATATGCAAT+TGG | + | 23848:11987-12006 | MS.gene38616:CDS | 30.0% | |
| TGCTATAATTAAGGAAGAAG+TGG | - | 23848:11823-11842 | MS.gene38616:intergenic | 30.0% | |
| TTAATTATAGCATCTCAGCT+TGG | + | 23848:11831-11850 | MS.gene38616:CDS | 30.0% | |
| TTTGATCTCTCCATAGAAAT+AGG | - | 23848:12919-12938 | MS.gene38616:intergenic | 30.0% | |
| !!! | TGCAATTGGTTTTTTAACCA+CGG | + | 23848:12001-12020 | MS.gene38616:CDS | 30.0% |
| AAATAGAGACGCATTATGAG+GGG | - | 23848:11531-11550 | MS.gene38616:intergenic | 35.0% | |
| AATTGTCTCATATTAGCCCT+AGG | + | 23848:11492-11511 | MS.gene38616:CDS | 35.0% | |
| ACGTGGTTTAGAAATAGAGA+TGG | + | 23848:12962-12981 | MS.gene38616:CDS | 35.0% | |
| ATTAAGGAAGAAGTGGAAAC+TGG | - | 23848:11816-11835 | MS.gene38616:intergenic | 35.0% | |
| CGTGGTTTAGAAATAGAGAT+GGG | + | 23848:12963-12982 | MS.gene38616:CDS | 35.0% | |
| GAAATAGAGACGCATTATGA+GGG | - | 23848:11532-11551 | MS.gene38616:intergenic | 35.0% | |
| GAAATTGTAGGTGATTCCAA+GGG | + | 23848:12650-12669 | MS.gene38616:intron | 35.0% | |
| GAAGAAAATAGGTGGTTTCA+TGG | - | 23848:11724-11743 | MS.gene38616:intergenic | 35.0% | |
| GGTTTCGTACAATTAGAGAT+TGG | + | 23848:12479-12498 | MS.gene38616:intron | 35.0% | |
| GTCACTTGTACTTTCTCTTT+GGG | + | 23848:12884-12903 | MS.gene38616:CDS | 35.0% | |
| TAGAGTAGTTGAACCTATGA+AGG | + | 23848:12520-12539 | MS.gene38616:intron | 35.0% | |
| TCACTTGTACTTTCTCTTTG+GGG | + | 23848:12885-12904 | MS.gene38616:CDS | 35.0% | |
| TCCAACAGTAAGCAAAACAA+TGG | - | 23848:11919-11938 | MS.gene38616:intergenic | 35.0% | |
| TGAAATAGAGACGCATTATG+AGG | - | 23848:11533-11552 | MS.gene38616:intergenic | 35.0% | |
| TGAAATTGTAGGTGATTCCA+AGG | + | 23848:12649-12668 | MS.gene38616:intron | 35.0% | |
| TGAGACAATTTACGATGAGA+AGG | - | 23848:11482-11501 | MS.gene38616:intergenic | 35.0% | |
| TTGGATGTATGAGATTGTGA+GGG | - | 23848:11625-11644 | MS.gene38616:intergenic | 35.0% | |
| TTGTGCTTCATCGTTATTGT+CGG | + | 23848:12776-12795 | MS.gene38616:CDS | 35.0% | |
| ! | TGGCTTTTAATGCGTTAATG+TGG | + | 23848:12718-12737 | MS.gene38616:CDS | 35.0% |
| ! | TGTCACTTGTACTTTCTCTT+TGG | + | 23848:12883-12902 | MS.gene38616:CDS | 35.0% |
| AAGCACTTACTATGTTGTGC+TGG | + | 23848:12698-12717 | MS.gene38616:CDS | 40.0% | |
| AGAGATGGGTCAAACTATAG+AGG | + | 23848:12977-12996 | MS.gene38616:CDS | 40.0% | |
| AGAGCAGAAAAGAAGAAACG+TGG | + | 23848:12945-12964 | MS.gene38616:CDS | 40.0% | |
| AGATGGGTCAAACTATAGAG+GGG | + | 23848:12979-12998 | MS.gene38616:CDS | 40.0% | |
| ATATTAGCCCTAGGTAACTC+CGG | + | 23848:11501-11520 | MS.gene38616:CDS | 40.0% | |
| ATGCGTCTCTATTTCATCCA+CGG | + | 23848:11537-11556 | MS.gene38616:CDS | 40.0% | |
| CACTTGTACTTTCTCTTTGG+GGG | + | 23848:12886-12905 | MS.gene38616:CDS | 40.0% | |
| GACGACTATCTATACGCATA+TGG | + | 23848:11777-11796 | MS.gene38616:CDS | 40.0% | |
| GAGATGGGTCAAACTATAGA+GGG | + | 23848:12978-12997 | MS.gene38616:CDS | 40.0% | |
| GTATAGATAGTCGTCAAGAC+CGG | - | 23848:11772-11791 | MS.gene38616:intergenic | 40.0% | |
| GTTGGATGTATGAGATTGTG+AGG | - | 23848:11626-11645 | MS.gene38616:intergenic | 40.0% | |
| TAGAAGAGAGTCTCCTTCAT+AGG | - | 23848:12536-12555 | MS.gene38616:intergenic | 40.0% | |
| TGGATGTATGAGATTGTGAG+GGG | - | 23848:11624-11643 | MS.gene38616:intergenic | 40.0% | |
| TGTGCTTCATCGTTATTGTC+GGG | + | 23848:12777-12796 | MS.gene38616:CDS | 40.0% | |
| TTATAAACCAACTCAACCGC+AGG | - | 23848:12059-12078 | MS.gene38616:intergenic | 40.0% | |
| TTCTCCTAGCCCAAAATTTC+TGG | - | 23848:12679-12698 | MS.gene38616:intergenic | 40.0% | |
| ! | AATGTGGCAAGCGTTTTTCT+TGG | + | 23848:12734-12753 | MS.gene38616:CDS | 40.0% |
| ! | ACGTTTCTTCTTTTCTGCTC+TGG | - | 23848:12946-12965 | MS.gene38616:intergenic | 40.0% |
| ! | ATGTGGCAAGCGTTTTTCTT+GGG | + | 23848:12735-12754 | MS.gene38616:CDS | 40.0% |
| ! | CAAGGGAAGCCAGAAATTTT+GGG | + | 23848:12667-12686 | MS.gene38616:CDS | 40.0% |
| ! | TGCTGTGTTGTTACCACTAA+CGG | + | 23848:12809-12828 | MS.gene38616:CDS | 40.0% |
| !! | GCCATTGTTTTGCTTACTGT+TGG | + | 23848:11915-11934 | MS.gene38616:CDS | 40.0% |
| !! | GGGTTTGTGTCCTATTTCTA+TGG | + | 23848:12906-12925 | MS.gene38616:CDS | 40.0% |
| !! | TCACAAGTGTGGTGTTGTAT+CGG | - | 23848:12398-12417 | MS.gene38616:intergenic | 40.0% |
| !!! | GTATGGATTTGTTTTGCCTG+CGG | + | 23848:12040-12059 | MS.gene38616:CDS | 40.0% |
| AATGAGCATCAAGGGGAAAC+CGG | - | 23848:11601-11620 | MS.gene38616:intergenic | 45.0% | |
| AGCATCTCAGCTTGGTTTCA+CGG | + | 23848:11839-11858 | MS.gene38616:CDS | 45.0% | |
| TATACGCATATGGCGTTGCT+CGG | + | 23848:11787-11806 | MS.gene38616:CDS | 45.0% | |
| ! | CCAAGGGAAGCCAGAAATTT+TGG | + | 23848:12666-12685 | MS.gene38616:CDS | 45.0% |
| ! | GAAGCCAGAAATTTTGGGCT+AGG | + | 23848:12672-12691 | MS.gene38616:CDS | 45.0% |
| ! | GCGTTTTTCTTGGGAGCTAT+TGG | + | 23848:12744-12763 | MS.gene38616:CDS | 45.0% |
| ! | GTTACCACTAACGGAAGTGT+TGG | + | 23848:12818-12837 | MS.gene38616:CDS | 45.0% |
| ! | GTTGCTGCTTCTGCATTGTA+TGG | + | 23848:12023-12042 | MS.gene38616:CDS | 45.0% |
| ! | GTTTTGCTTACTGTTGGAGC+TGG | + | 23848:11921-11940 | MS.gene38616:CDS | 45.0% |
| ! | TACTGTTGGAGCTGGTGTTT+TGG | + | 23848:11929-11948 | MS.gene38616:CDS | 45.0% |
| ! | TAGTTTTTCTGCAGGGGAGA+TGG | - | 23848:11691-11710 | MS.gene38616:intergenic | 45.0% |
| ! | TGTTTTGCAGAAACACCAGC+AGG | - | 23848:11978-11997 | MS.gene38616:intergenic | 45.0% |
| !! | CCAAAATTTCTGGCTTCCCT+TGG | - | 23848:12669-12688 | MS.gene38616:intergenic | 45.0% |
| AAGGCGGCTGCGAAGAAAAT+AGG | - | 23848:11735-11754 | MS.gene38616:intergenic | 50.0% | |
| ACTGCCAACACTTCCGTTAG+TGG | - | 23848:12825-12844 | MS.gene38616:intergenic | 50.0% | |
| CGAAACCTAGACCTAGACAC+CGG | - | 23848:12466-12485 | MS.gene38616:intergenic | 50.0% | |
| CGTCTCTATTTCATCCACGG+TGG | + | 23848:11540-11559 | MS.gene38616:CDS | 50.0% | |
| GAAACCTAGACCTAGACACC+GGG | - | 23848:12465-12484 | MS.gene38616:intergenic | 50.0% | |
| GCCACTCTCTTCTGTGTCAT+AGG | + | 23848:12143-12162 | MS.gene38616:CDS | 50.0% | |
| GCCTATGACACAGAAGAGAG+TGG | - | 23848:12147-12166 | MS.gene38616:intergenic | 50.0% | |
| GTGAGGGGAATGAGCATCAA+GGG | - | 23848:11609-11628 | MS.gene38616:intergenic | 50.0% | |
| TCACATGTTAGTGTCGTGCC+CGG | + | 23848:12444-12463 | MS.gene38616:intron | 50.0% | |
| TGAGGGGAATGAGCATCAAG+GGG | - | 23848:11608-11627 | MS.gene38616:intergenic | 50.0% | |
| TGTGAGGGGAATGAGCATCA+AGG | - | 23848:11610-11629 | MS.gene38616:intergenic | 50.0% | |
| ! | GTGACACCCCTTTTTCTGCT+TGG | - | 23848:12869-12888 | MS.gene38616:intergenic | 50.0% |
| ! | TGTTTTGCCTGCGGTTGAGT+TGG | + | 23848:12049-12068 | MS.gene38616:CDS | 50.0% |
| !! | TGTGGTGTTGTATCGGACAC+TGG | - | 23848:12391-12410 | MS.gene38616:intergenic | 50.0% |
| ACCGGTGAGGATTCCGACAA+AGG | - | 23848:11754-11773 | MS.gene38616:intergenic | 55.0% | |
| ACGAGTAGTGATCGTCCTGC+TGG | + | 23848:11960-11979 | MS.gene38616:CDS | 55.0% | |
| ACGCATTATGAGGGGACCAC+CGG | - | 23848:11523-11542 | MS.gene38616:intergenic | 55.0% | |
| CAATGCAGAAGCAGCAACCG+TGG | - | 23848:12021-12040 | MS.gene38616:intergenic | 55.0% | |
| GATAGTCGTCAAGACCGGTG+AGG | - | 23848:11767-11786 | MS.gene38616:intergenic | 55.0% | |
| GCCTTTGTCGGAATCCTCAC+CGG | + | 23848:11750-11769 | MS.gene38616:CDS | 55.0% | |
| GCGGCTGCGAAGAAAATAGG+TGG | - | 23848:11732-11751 | MS.gene38616:intergenic | 55.0% | |
| GGTGAGGATTCCGACAAAGG+CGG | - | 23848:11751-11770 | MS.gene38616:intergenic | 55.0% | |
| TTAGCCCTAGGTAACTCCGG+TGG | + | 23848:11504-11523 | MS.gene38616:CDS | 55.0% | |
| TTCTGCAGGGGAGATGGAGA+TGG | - | 23848:11685-11704 | MS.gene38616:intergenic | 55.0% | |
| TTCTTCGCAGCCGCCTTTGT+CGG | + | 23848:11738-11757 | MS.gene38616:CDS | 55.0% | |
| !! | ATGGAGATGGTGGTGGATGG+TGG | - | 23848:11672-11691 | MS.gene38616:intergenic | 55.0% |
| !! | GAGATGGAGATGGTGGTGGA+TGG | - | 23848:11675-11694 | MS.gene38616:intergenic | 55.0% |
| AGGGGAAACCGGCGGTTTCA+AGG | - | 23848:11590-11609 | MS.gene38616:intergenic | 60.0% | |
| GAAACCGGCGGTTTCAAGGC+AGG | - | 23848:11586-11605 | MS.gene38616:intergenic | 60.0% | |
| GAGCATCAAGGGGAAACCGG+CGG | - | 23848:11598-11617 | MS.gene38616:intergenic | 60.0% | |
| GGGACCACCGGAGTTACCTA+GGG | - | 23848:11511-11530 | MS.gene38616:intergenic | 60.0% | |
| TAGTGTCGTGCCCGGTGTCT+AGG | + | 23848:12452-12471 | MS.gene38616:intron | 60.0% | |
| TGCAGGGGAGATGGAGATGG+TGG | - | 23848:11682-11701 | MS.gene38616:intergenic | 60.0% | |
| ! | AGGGGAGATGGAGATGGTGG+TGG | - | 23848:11679-11698 | MS.gene38616:intergenic | 60.0% |
| !! | GAGATGGTGGTGGATGGTGG+AGG | - | 23848:11669-11688 | MS.gene38616:intergenic | 60.0% |
| !! | TGGATGGTGGAGGATGGTGG+CGG | - | 23848:11659-11678 | MS.gene38616:intergenic | 60.0% |
| !! | TGGTGGATGGTGGAGGATGG+TGG | - | 23848:11662-11681 | MS.gene38616:intergenic | 60.0% |
| !! | TGGTGGTGGATGGTGGAGGA+TGG | - | 23848:11665-11684 | MS.gene38616:intergenic | 60.0% |
| ACCGGCGGTTTCAAGGCAGG+CGG | - | 23848:11583-11602 | MS.gene38616:intergenic | 65.0% | |
| AGGCGGAGAGCCAGACACGT+TGG | - | 23848:11566-11585 | MS.gene38616:intergenic | 65.0% | |
| CGTGCCCGGTGTCTAGGTCT+AGG | + | 23848:12458-12477 | MS.gene38616:intron | 65.0% | |
| GGGGACCACCGGAGTTACCT+AGG | - | 23848:11512-11531 | MS.gene38616:intergenic | 65.0% | |
| TCCACGGTGGCCAACGTGTC+TGG | + | 23848:11553-11572 | MS.gene38616:CDS | 65.0% | |
| TCCGCCTGCCTTGAAACCGC+CGG | + | 23848:11579-11598 | MS.gene38616:CDS | 65.0% | |
| !! | GTGGAGGATGGTGGCGGTGA+CGG | - | 23848:11653-11672 | MS.gene38616:intergenic | 65.0% |
| GCCAGACACGTTGGCCACCG+TGG | - | 23848:11557-11576 | MS.gene38616:intergenic | 70.0% | |
| ! | GGTGGCGGTGACGGCAGCGT+TGG | - | 23848:11644-11663 | MS.gene38616:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 23848 | gene | 11432 | 13016 | 11432 | ID=MS.gene38616 |
| 23848 | mRNA | 11432 | 13016 | 11432 | ID=MS.gene38616.t1;Parent=MS.gene38616 |
| 23848 | exon | 11432 | 12190 | 11432 | ID=MS.gene38616.t1.exon1;Parent=MS.gene38616.t1 |
| 23848 | CDS | 11432 | 12190 | 11432 | ID=cds.MS.gene38616.t1;Parent=MS.gene38616.t1 |
| 23848 | exon | 12660 | 13016 | 12660 | ID=MS.gene38616.t1.exon2;Parent=MS.gene38616.t1 |
| 23848 | CDS | 12660 | 13016 | 12660 | ID=cds.MS.gene38616.t1;Parent=MS.gene38616.t1 |
| Gene Sequence |
| Protein sequence |
