Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043890.t1 | XP_003615204.1 | 98.4 | 365 | 4 | 1 | 1 | 365 | 1 | 363 | 9.10E-165 | 589.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043890.t1 | Q9FZ96 | 57.1 | 338 | 139 | 3 | 27 | 359 | 11 | 347 | 1.0e-100 | 368.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043890.t1 | G7KBC7 | 98.4 | 365 | 4 | 1 | 1 | 365 | 1 | 363 | 6.6e-165 | 589.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013113 | MS.gene043890 | PPI |
| MS.gene38573 | MS.gene043890 | PPI |
| MS.gene38616 | MS.gene043890 | PPI |
| MS.gene64133 | MS.gene043890 | PPI |
| MS.gene043890 | MS.gene010157 | PPI |
| MS.gene020463 | MS.gene043890 | PPI |
| MS.gene010157 | MS.gene043890 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043890.t1 | MTR_5g065080 | 98.087 | 366 | 5 | 1 | 1 | 366 | 1 | 364 | 0.0 | 725 |
| MS.gene043890.t1 | MTR_3g099740 | 63.388 | 366 | 124 | 4 | 8 | 365 | 5 | 368 | 1.15e-167 | 473 |
| MS.gene043890.t1 | MTR_3g099750 | 60.548 | 365 | 134 | 4 | 9 | 365 | 5 | 367 | 3.59e-159 | 451 |
| MS.gene043890.t1 | MTR_2g437590 | 36.236 | 356 | 201 | 7 | 12 | 358 | 65 | 403 | 9.30e-70 | 224 |
| MS.gene043890.t1 | MTR_2g015470 | 32.836 | 335 | 217 | 2 | 22 | 356 | 44 | 370 | 6.93e-58 | 192 |
| MS.gene043890.t1 | MTR_4g098900 | 33.531 | 337 | 198 | 5 | 27 | 360 | 42 | 355 | 2.49e-56 | 189 |
| MS.gene043890.t1 | MTR_3g058660 | 32.410 | 361 | 227 | 4 | 12 | 366 | 7 | 356 | 1.30e-55 | 186 |
| MS.gene043890.t1 | MTR_2g437580 | 34.579 | 321 | 189 | 7 | 41 | 355 | 72 | 377 | 2.73e-52 | 178 |
| MS.gene043890.t1 | MTR_8g024620 | 32.047 | 337 | 202 | 3 | 20 | 350 | 42 | 357 | 1.44e-51 | 176 |
| MS.gene043890.t1 | MTR_8g024620 | 32.047 | 337 | 202 | 3 | 20 | 350 | 53 | 368 | 1.97e-51 | 176 |
| MS.gene043890.t1 | MTR_8g024620 | 32.047 | 337 | 202 | 3 | 20 | 350 | 54 | 369 | 2.02e-51 | 176 |
| MS.gene043890.t1 | MTR_7g080750 | 30.904 | 343 | 211 | 5 | 14 | 355 | 23 | 340 | 4.12e-46 | 161 |
| MS.gene043890.t1 | MTR_6g082540 | 32.653 | 147 | 99 | 0 | 198 | 344 | 5 | 151 | 1.08e-22 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043890.t1 | AT2G33750 | 58.430 | 344 | 136 | 2 | 17 | 360 | 3 | 339 | 3.28e-140 | 402 |
| MS.gene043890.t1 | AT1G28220 | 55.917 | 338 | 141 | 3 | 17 | 354 | 1 | 330 | 9.35e-138 | 396 |
| MS.gene043890.t1 | AT2G33750 | 56.620 | 355 | 136 | 3 | 17 | 360 | 3 | 350 | 2.37e-136 | 393 |
| MS.gene043890.t1 | AT1G28230 | 58.621 | 348 | 138 | 3 | 17 | 359 | 1 | 347 | 5.90e-136 | 392 |
| MS.gene043890.t1 | AT4G18220 | 35.093 | 322 | 195 | 5 | 41 | 361 | 66 | 374 | 1.85e-55 | 187 |
| MS.gene043890.t1 | AT4G18210 | 32.687 | 361 | 222 | 5 | 7 | 361 | 31 | 376 | 5.53e-52 | 177 |
| MS.gene043890.t1 | AT4G18205 | 34.579 | 321 | 193 | 4 | 41 | 357 | 61 | 368 | 3.03e-50 | 172 |
| MS.gene043890.t1 | AT1G30840 | 33.923 | 339 | 206 | 6 | 8 | 342 | 12 | 336 | 9.68e-46 | 161 |
| MS.gene043890.t1 | AT1G30840 | 33.923 | 339 | 206 | 6 | 8 | 342 | 12 | 336 | 9.68e-46 | 161 |
| MS.gene043890.t1 | AT4G18197 | 32.416 | 327 | 204 | 4 | 41 | 363 | 64 | 377 | 7.12e-45 | 159 |
| MS.gene043890.t1 | AT1G44750 | 31.319 | 364 | 229 | 5 | 3 | 357 | 6 | 357 | 1.45e-43 | 155 |
| MS.gene043890.t1 | AT1G44750 | 31.319 | 364 | 229 | 5 | 3 | 357 | 6 | 357 | 1.45e-43 | 155 |
| MS.gene043890.t1 | AT1G44750 | 31.319 | 364 | 229 | 5 | 3 | 357 | 18 | 369 | 2.16e-43 | 154 |
| MS.gene043890.t1 | AT4G18195 | 32.177 | 317 | 202 | 3 | 41 | 355 | 67 | 372 | 5.89e-43 | 154 |
| MS.gene043890.t1 | AT1G44750 | 34.263 | 251 | 164 | 1 | 107 | 357 | 44 | 293 | 2.50e-42 | 150 |
| MS.gene043890.t1 | AT1G44750 | 34.263 | 251 | 164 | 1 | 107 | 357 | 44 | 293 | 2.50e-42 | 150 |
| MS.gene043890.t1 | AT1G44750 | 34.263 | 251 | 164 | 1 | 107 | 357 | 44 | 293 | 2.50e-42 | 150 |
| MS.gene043890.t1 | AT1G44750 | 34.263 | 251 | 164 | 1 | 107 | 357 | 44 | 293 | 2.50e-42 | 150 |
| MS.gene043890.t1 | AT1G44750 | 34.263 | 251 | 164 | 1 | 107 | 357 | 44 | 293 | 2.50e-42 | 150 |
| MS.gene043890.t1 | AT4G18190 | 32.055 | 365 | 229 | 6 | 3 | 361 | 20 | 371 | 1.04e-41 | 150 |
| MS.gene043890.t1 | AT2G24220 | 33.233 | 331 | 206 | 3 | 7 | 337 | 25 | 340 | 3.49e-41 | 148 |
| MS.gene043890.t1 | AT2G24220 | 33.233 | 331 | 206 | 3 | 7 | 337 | 43 | 358 | 4.35e-41 | 148 |
| MS.gene043890.t1 | AT4G08700 | 27.246 | 345 | 235 | 4 | 14 | 357 | 30 | 359 | 1.16e-35 | 134 |
| MS.gene043890.t1 | AT5G41160 | 26.776 | 366 | 243 | 7 | 5 | 357 | 9 | 362 | 5.06e-34 | 129 |
| MS.gene043890.t1 | AT1G19770 | 27.419 | 310 | 207 | 5 | 51 | 349 | 88 | 390 | 2.29e-24 | 103 |
| MS.gene043890.t1 | AT1G57943 | 28.485 | 330 | 205 | 10 | 49 | 365 | 85 | 396 | 2.46e-23 | 100 |
| MS.gene043890.t1 | AT1G57943 | 28.485 | 330 | 205 | 10 | 49 | 365 | 84 | 395 | 2.49e-23 | 100 |
| MS.gene043890.t1 | AT1G57980 | 28.012 | 332 | 203 | 9 | 49 | 365 | 82 | 392 | 1.37e-21 | 95.5 |
| MS.gene043890.t1 | AT1G57990 | 25.836 | 329 | 214 | 9 | 49 | 365 | 78 | 388 | 1.39e-19 | 89.7 |
| MS.gene043890.t1 | AT1G47603 | 26.879 | 346 | 215 | 10 | 26 | 350 | 53 | 381 | 2.48e-17 | 83.2 |
| MS.gene043890.t1 | AT1G09860 | 27.928 | 333 | 197 | 14 | 49 | 357 | 69 | 382 | 6.61e-14 | 72.8 |
| MS.gene043890.t1 | AT1G75470 | 21.610 | 236 | 171 | 4 | 124 | 347 | 144 | 377 | 1.34e-12 | 68.9 |
Find 71 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTGGTGCTCTCACTTT+GGG | 0.109096 | 5.3:+51274852 | MS.gene043890:CDS |
| GTTAAGGGAATGAGAATTAT+TGG | 0.202075 | 5.3:-51272999 | None:intergenic |
| TGTTGTTGCCGTTAGGGTTT+TGG | 0.275520 | 5.3:-51273058 | None:intergenic |
| TGTGCCTCTTCATTGCTATC+TGG | 0.289354 | 5.3:+51274745 | MS.gene043890:CDS |
| GACCCTTGGGAGTGTTGTTT+TGG | 0.297124 | 5.3:+51273307 | MS.gene043890:CDS |
| AACAGCTAAGATTTCAGTTA+TGG | 0.309424 | 5.3:-51274791 | None:intergenic |
| TTGGCTTCTGCTGCTTTGTA+TGG | 0.317318 | 5.3:+51273404 | MS.gene043890:CDS |
| TATTACTTATTCTCTTGTTA+TGG | 0.319523 | 5.3:+51273475 | MS.gene043890:CDS |
| TTGCTTTGGTGCTCTCACTT+TGG | 0.319968 | 5.3:+51274851 | MS.gene043890:CDS |
| GGATTGAGTTTAGTATTAGA+AGG | 0.332698 | 5.3:-51272872 | None:intergenic |
| TCAACTAAGGATTATGTGAT+TGG | 0.365760 | 5.3:+51273368 | MS.gene043890:CDS |
| AGCAGAGAAAGGGGTTGCTT+TGG | 0.380450 | 5.3:+51274837 | MS.gene043890:CDS |
| TTATTATTGTTGTTGCCGTT+AGG | 0.386452 | 5.3:-51273065 | None:intergenic |
| ACAGCTAAGATTTCAGTTAT+GGG | 0.401537 | 5.3:-51274790 | None:intergenic |
| TTAAGGGAATGAGAATTATT+GGG | 0.403587 | 5.3:-51272998 | None:intergenic |
| AACGGTAACGGTAACGGTTG+TGG | 0.403687 | 5.3:-51273034 | None:intergenic |
| AGAAATTTCAAGCAGAGAAA+GGG | 0.404504 | 5.3:+51274827 | MS.gene043890:CDS |
| TATTATTGTTGTTGCCGTTA+GGG | 0.409224 | 5.3:-51273064 | None:intergenic |
| ACCACCTTTGTTTATCGCTT+CGG | 0.421218 | 5.3:+51273106 | MS.gene043890:CDS |
| GAGAAATTTCAAGCAGAGAA+AGG | 0.424086 | 5.3:+51274826 | MS.gene043890:CDS |
| TTGAAATCCCTTGCTTCCCT+TGG | 0.436924 | 5.3:-51274634 | None:intergenic |
| GAAGCAAGGGATTTCAAGCT+TGG | 0.447995 | 5.3:+51274640 | MS.gene043890:CDS |
| TCTTGTGAAGCATAAGTTCA+CGG | 0.458836 | 5.3:+51273256 | MS.gene043890:CDS |
| GCCATACACGTTTGCCGCCA+TGG | 0.460981 | 5.3:-51272947 | None:intergenic |
| AAGCAAGGGATTTCAAGCTT+GGG | 0.461079 | 5.3:+51274641 | MS.gene043890:CDS |
| TCCATGGCGGCAAACGTGTA+TGG | 0.467259 | 5.3:+51272946 | MS.gene043890:CDS |
| GTGATTGAATGAAGACTTTG+AGG | 0.480812 | 5.3:-51274943 | None:intergenic |
| TTGGGAAGGCAGATGTTTCA+AGG | 0.487413 | 5.3:-51272980 | None:intergenic |
| CGATTTCGCAGGTGATTCCA+AGG | 0.488583 | 5.3:+51274617 | MS.gene043890:intron |
| TGGTCCACCACATGTTCCTA+TGG | 0.488999 | 5.3:-51272901 | None:intergenic |
| ACTTGTTGGTGAGTCAACTA+AGG | 0.493336 | 5.3:+51273355 | MS.gene043890:CDS |
| GTGGATGTGAGAAATGGTTA+AGG | 0.494562 | 5.3:-51273015 | None:intergenic |
| GCTAATTATTCTTTCCACCA+TGG | 0.494814 | 5.3:-51272811 | None:intergenic |
| GATGGTGGAGATAGACTTGT+TGG | 0.502081 | 5.3:+51273341 | MS.gene043890:CDS |
| TTTATCGCTTCGGCAGTCAT+CGG | 0.508139 | 5.3:+51273116 | MS.gene043890:CDS |
| CACATGTTCCTATGGCTAAG+AGG | 0.511689 | 5.3:-51272893 | None:intergenic |
| TTTGGTAACGGTAACGGTAA+CGG | 0.513127 | 5.3:-51273040 | None:intergenic |
| GTAGAGGTAGTCGTCTAAAC+CGG | 0.524198 | 5.3:-51273147 | None:intergenic |
| TTATAAACCAACTCCAACAA+CGG | 0.529943 | 5.3:-51273437 | None:intergenic |
| ACGGTTGTGGATGTGAGAAA+TGG | 0.530168 | 5.3:-51273021 | None:intergenic |
| GAAATTTCAAGCAGAGAAAG+GGG | 0.546511 | 5.3:+51274828 | MS.gene043890:CDS |
| GCTTTGGTGCTCTCACTTTG+GGG | 0.547915 | 5.3:+51274853 | MS.gene043890:CDS |
| TGGATGTGAGAAATGGTTAA+GGG | 0.553222 | 5.3:-51273014 | None:intergenic |
| AGGTGATTCCAAGGGAAGCA+AGG | 0.563127 | 5.3:+51274626 | MS.gene043890:intron |
| CGGTAGACGCTTTATGCCGC+AGG | 0.567407 | 5.3:-51273171 | None:intergenic |
| CTGCGGCATAAAGCGTCTAC+CGG | 0.571271 | 5.3:+51273172 | MS.gene043890:CDS |
| GCAGTCATCGGAGTTCTCAC+CGG | 0.580044 | 5.3:+51273128 | MS.gene043890:CDS |
| ATGCGTTTATACTTCATCCA+TGG | 0.581468 | 5.3:+51272930 | MS.gene043890:CDS |
| AGCAAGGGATTTCAAGCTTG+GGG | 0.584822 | 5.3:+51274642 | MS.gene043890:CDS |
| AGTACTATGTTGTGCTAGTG+TGG | 0.588131 | 5.3:+51274671 | MS.gene043890:CDS |
| CTCTTAGCCATAGGAACATG+TGG | 0.591598 | 5.3:+51272894 | MS.gene043890:CDS |
| AATGCCAGATAGCAATGAAG+AGG | 0.600270 | 5.3:-51274749 | None:intergenic |
| AACTCAATCCTCTTAGCCAT+AGG | 0.604730 | 5.3:+51272885 | MS.gene043890:CDS |
| GTGCCAAAACAACACTCCCA+AGG | 0.608152 | 5.3:-51273310 | None:intergenic |
| TGCCAAAACAACACTCCCAA+GGG | 0.608894 | 5.3:-51273309 | None:intergenic |
| GGGAATGAGAATTATTGGGA+AGG | 0.610936 | 5.3:-51272994 | None:intergenic |
| TACCGTTACCAAAACCCTAA+CGG | 0.615357 | 5.3:+51273050 | MS.gene043890:CDS |
| GGTGATTCCAAGGGAAGCAA+GGG | 0.617537 | 5.3:+51274627 | MS.gene043890:intron |
| AAGTATAAACGCATTACTAG+TGG | 0.641109 | 5.3:-51272921 | None:intergenic |
| GCTTTATGCCGCAGGCGTAG+AGG | 0.652914 | 5.3:-51273163 | None:intergenic |
| CACGGTGAAAGCTAAGTGTG+AGG | 0.660195 | 5.3:-51273219 | None:intergenic |
| TTGGCACTGAATTCTGATGG+TGG | 0.661099 | 5.3:+51273326 | MS.gene043890:CDS |
| GATTTCGCAGGTGATTCCAA+GGG | 0.661936 | 5.3:+51274618 | MS.gene043890:intron |
| GACGACTACCTCTACGCCTG+CGG | 0.669034 | 5.3:+51273155 | MS.gene043890:CDS |
| CGTTTATACTTCATCCATGG+CGG | 0.677695 | 5.3:+51272933 | MS.gene043890:CDS |
| TTAGCCATAGGAACATGTGG+TGG | 0.677866 | 5.3:+51272897 | MS.gene043890:CDS |
| ACTGCCGAAGCGATAAACAA+AGG | 0.695167 | 5.3:-51273110 | None:intergenic |
| ATTAACGAAGAAGTTGACAC+CGG | 0.698512 | 5.3:-51273191 | None:intergenic |
| GCCGAAGCGATAAACAAAGG+TGG | 0.698965 | 5.3:-51273107 | None:intergenic |
| CTCACACTTAGCTTTCACCG+TGG | 0.713882 | 5.3:+51273220 | MS.gene043890:CDS |
| TAGTGTGGAGTGCTATAATG+TGG | 0.749239 | 5.3:+51274686 | MS.gene043890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAAATAGAGAAA+TGG | + | chr5.3:51274915-51274934 | MS.gene043890:CDS | 10.0% |
| !! | AATAAAATAGAATTAGAATA+AGG | + | chr5.3:51274038-51274057 | MS.gene043890:intron | 10.0% |
| !!! | ATTCTAATTCTATTTTATTT+TGG | - | chr5.3:51274037-51274056 | None:intergenic | 10.0% |
| !!! | GTAATAAATAATTTTTCTAT+TGG | - | chr5.3:51274578-51274597 | None:intergenic | 10.0% |
| !!! | TAAATTTCTTTTAATTCTAT+TGG | + | chr5.3:51274300-51274319 | MS.gene043890:intron | 10.0% |
| !!! | TTTCTTTTAATTCTTTATTT+AGG | + | chr5.3:51274274-51274293 | MS.gene043890:intron | 10.0% |
| !! | ATTAGTAATTCAATATCAAT+GGG | - | chr5.3:51274125-51274144 | None:intergenic | 15.0% |
| !! | TTAGATTTATTTATTGTATG+TGG | - | chr5.3:51273833-51273852 | None:intergenic | 15.0% |
| !!! | ATCTAAAACATTTTTTCTAT+TGG | + | chr5.3:51274394-51274413 | MS.gene043890:intron | 15.0% |
| !!! | ATTACTTTTGTTTTTAATAG+TGG | + | chr5.3:51273993-51274012 | MS.gene043890:intron | 15.0% |
| !!! | TTTTTTTTTTAGATAACAAG+AGG | + | chr5.3:51274497-51274516 | MS.gene043890:intron | 15.0% |
| !! | AAACTTAAAACCTAAATTGT+GGG | - | chr5.3:51274257-51274276 | None:intergenic | 20.0% |
| !! | AATAAAAAGAGAGCAATATT+CGG | - | chr5.3:51274082-51274101 | None:intergenic | 20.0% |
| !! | ACCAAATAGAAAAATAGAAT+TGG | - | chr5.3:51274335-51274354 | None:intergenic | 20.0% |
| !! | CATTAGTAATTCAATATCAA+TGG | - | chr5.3:51274126-51274145 | None:intergenic | 20.0% |
| !! | CTAAGAATAGTTATTACATT+TGG | + | chr5.3:51274181-51274200 | MS.gene043890:intron | 20.0% |
| !! | TATTACTTATTCTCTTGTTA+TGG | + | chr5.3:51273475-51273494 | MS.gene043890:CDS | 20.0% |
| !!! | ACCAATTCTATTTTTCTATT+TGG | + | chr5.3:51274331-51274350 | MS.gene043890:intron | 20.0% |
| !!! | TTTTATGATGAGATTAAAGA+AGG | + | chr5.3:51274889-51274908 | MS.gene043890:CDS | 20.0% |
| !!! | TTTTTATTTCTCAAAACTTG+TGG | + | chr5.3:51274094-51274113 | MS.gene043890:intron | 20.0% |
| !!! | TTTTTGTTTATAAGAGTGAT+TGG | - | chr5.3:51273759-51273778 | None:intergenic | 20.0% |
| ! | AATCCTTACGTAAATTGAAT+TGG | - | chr5.3:51274221-51274240 | None:intergenic | 25.0% |
| ! | ATAAAAAGAGAGCAATATTC+GGG | - | chr5.3:51274081-51274100 | None:intergenic | 25.0% |
| ! | ATTCCAATTCAATTTACGTA+AGG | + | chr5.3:51274215-51274234 | MS.gene043890:intron | 25.0% |
| ! | GAAACTTAAAACCTAAATTG+TGG | - | chr5.3:51274258-51274277 | None:intergenic | 25.0% |
| ! | TTAAGGGAATGAGAATTATT+GGG | - | chr5.3:51273001-51273020 | None:intergenic | 25.0% |
| !! | ATAGTGGAATTAGAATATTG+TGG | + | chr5.3:51274009-51274028 | MS.gene043890:intron | 25.0% |
| !! | GATCATAGACAATGATTTTA+AGG | + | chr5.3:51273550-51273569 | MS.gene043890:CDS | 25.0% |
| !!! | GATTGGTTTTGTTATGATAT+TGG | + | chr5.3:51273385-51273404 | MS.gene043890:CDS | 25.0% |
| AACAGCTAAGATTTCAGTTA+TGG | - | chr5.3:51274794-51274813 | None:intergenic | 30.0% | |
| AAGTATAAACGCATTACTAG+TGG | - | chr5.3:51272924-51272943 | None:intergenic | 30.0% | |
| AATTGTGAGTGTACAAAGTA+TGG | - | chr5.3:51273617-51273636 | None:intergenic | 30.0% | |
| ACAGCTAAGATTTCAGTTAT+GGG | - | chr5.3:51274793-51274812 | None:intergenic | 30.0% | |
| AGAAATTTCAAGCAGAGAAA+GGG | + | chr5.3:51274827-51274846 | MS.gene043890:CDS | 30.0% | |
| CTATTCTTAGATTCAATACG+TGG | - | chr5.3:51274171-51274190 | None:intergenic | 30.0% | |
| GGATTGAGTTTAGTATTAGA+AGG | - | chr5.3:51272875-51272894 | None:intergenic | 30.0% | |
| GTTAAGGGAATGAGAATTAT+TGG | - | chr5.3:51273002-51273021 | None:intergenic | 30.0% | |
| TAAAAAGAGAGCAATATTCG+GGG | - | chr5.3:51274080-51274099 | None:intergenic | 30.0% | |
| TCAACTAAGGATTATGTGAT+TGG | + | chr5.3:51273368-51273387 | MS.gene043890:CDS | 30.0% | |
| TGTTTATAAGAGTGATTGGA+GGG | - | chr5.3:51273755-51273774 | None:intergenic | 30.0% | |
| TTATAAACCAACTCCAACAA+CGG | - | chr5.3:51273440-51273459 | None:intergenic | 30.0% | |
| TTGTTTATAAGAGTGATTGG+AGG | - | chr5.3:51273756-51273775 | None:intergenic | 30.0% | |
| ! | ATGTGGCAATTTTTCTTCTT+AGG | + | chr5.3:51274703-51274722 | MS.gene043890:CDS | 30.0% |
| ! | CATTCTAAAGACACACTTAA+TGG | - | chr5.3:51273936-51273955 | None:intergenic | 30.0% |
| ! | TATTATTGTTGTTGCCGTTA+GGG | - | chr5.3:51273067-51273086 | None:intergenic | 30.0% |
| ! | TTATTATTGTTGTTGCCGTT+AGG | - | chr5.3:51273068-51273087 | None:intergenic | 30.0% |
| AAAAAGAGAGCAATATTCGG+GGG | - | chr5.3:51274079-51274098 | None:intergenic | 35.0% | |
| AAGAAAAAACGCGAAAACCA+CGG | - | chr5.3:51273240-51273259 | None:intergenic | 35.0% | |
| ATGCGTTTATACTTCATCCA+TGG | + | chr5.3:51272930-51272949 | MS.gene043890:CDS | 35.0% | |
| ATTAACGAAGAAGTTGACAC+CGG | - | chr5.3:51273194-51273213 | None:intergenic | 35.0% | |
| CAATCTTAGTCCCACAATTT+AGG | + | chr5.3:51274244-51274263 | MS.gene043890:intron | 35.0% | |
| CTAAATTGTGGGACTAAGAT+TGG | - | chr5.3:51274246-51274265 | None:intergenic | 35.0% | |
| GAAATTTCAAGCAGAGAAAG+GGG | + | chr5.3:51274828-51274847 | MS.gene043890:CDS | 35.0% | |
| GAACTACCCCTTAAAAAATG+CGG | + | chr5.3:51274542-51274561 | MS.gene043890:intron | 35.0% | |
| GAGAAATTTCAAGCAGAGAA+AGG | + | chr5.3:51274826-51274845 | MS.gene043890:CDS | 35.0% | |
| GTGATTGAATGAAGACTTTG+AGG | - | chr5.3:51274946-51274965 | None:intergenic | 35.0% | |
| TCTTGTGAAGCATAAGTTCA+CGG | + | chr5.3:51273256-51273275 | MS.gene043890:CDS | 35.0% | |
| TGAGACAGAGTACATTTGTT+TGG | - | chr5.3:51273906-51273925 | None:intergenic | 35.0% | |
| TGGATGTGAGAAATGGTTAA+GGG | - | chr5.3:51273017-51273036 | None:intergenic | 35.0% | |
| ! | TTTTTCTTCTTAGGAGCGAT+TGG | + | chr5.3:51274712-51274731 | MS.gene043890:CDS | 35.0% |
| !! | CTATTGTTTTGTTGACCCTT+GGG | + | chr5.3:51273294-51273313 | MS.gene043890:CDS | 35.0% |
| !! | TCTATTGTTTTGTTGACCCT+TGG | + | chr5.3:51273293-51273312 | MS.gene043890:CDS | 35.0% |
| !!! | CTACTTTGTTTTGCGTTGTT+GGG | + | chr5.3:51273525-51273544 | MS.gene043890:CDS | 35.0% |
| !!! | TGGATTTGTTTTACCGTTGT+TGG | + | chr5.3:51273424-51273443 | MS.gene043890:CDS | 35.0% |
| !!! | TTCGACTCCGCATTTTTTAA+GGG | - | chr5.3:51274552-51274571 | None:intergenic | 35.0% |
| !!! | TTTCGACTCCGCATTTTTTA+AGG | - | chr5.3:51274553-51274572 | None:intergenic | 35.0% |
| AAAAGAGAGCAATATTCGGG+GGG | - | chr5.3:51274078-51274097 | None:intergenic | 40.0% | |
| AACTCAATCCTCTTAGCCAT+AGG | + | chr5.3:51272885-51272904 | MS.gene043890:CDS | 40.0% | |
| AAGCAAGGGATTTCAAGCTT+GGG | + | chr5.3:51274641-51274660 | MS.gene043890:CDS | 40.0% | |
| AATGCCAGATAGCAATGAAG+AGG | - | chr5.3:51274752-51274771 | None:intergenic | 40.0% | |
| AGTACTATGTTGTGCTAGTG+TGG | + | chr5.3:51274671-51274690 | MS.gene043890:CDS | 40.0% | |
| CGTTTATACTTCATCCATGG+CGG | + | chr5.3:51272933-51272952 | MS.gene043890:CDS | 40.0% | |
| GGGAATGAGAATTATTGGGA+AGG | - | chr5.3:51272997-51273016 | None:intergenic | 40.0% | |
| GTGGATGTGAGAAATGGTTA+AGG | - | chr5.3:51273018-51273037 | None:intergenic | 40.0% | |
| TACCGTTACCAAAACCCTAA+CGG | + | chr5.3:51273050-51273069 | MS.gene043890:CDS | 40.0% | |
| ! | AATGAGTATTGCGATTTCGC+AGG | + | chr5.3:51274606-51274625 | MS.gene043890:intron | 40.0% |
| ! | ACCACCTTTGTTTATCGCTT+CGG | + | chr5.3:51273106-51273125 | MS.gene043890:CDS | 40.0% |
| ! | ACTTGTTGGTGAGTCAACTA+AGG | + | chr5.3:51273355-51273374 | MS.gene043890:CDS | 40.0% |
| ! | TAGTGTGGAGTGCTATAATG+TGG | + | chr5.3:51274686-51274705 | MS.gene043890:CDS | 40.0% |
| ! | TGTTTTACCGTTGTTGGAGT+TGG | + | chr5.3:51273430-51273449 | MS.gene043890:CDS | 40.0% |
| !! | GTTTTGGCACTGAATTCTGA+TGG | + | chr5.3:51273323-51273342 | MS.gene043890:CDS | 40.0% |
| !! | TTTGGTAACGGTAACGGTAA+CGG | - | chr5.3:51273043-51273062 | None:intergenic | 40.0% |
| !!! | GCTACTTTGTTTTGCGTTGT+TGG | + | chr5.3:51273524-51273543 | MS.gene043890:CDS | 40.0% |
| !!! | GGGTAGTTCTCTCTTTTTTC+CGG | - | chr5.3:51274531-51274550 | None:intergenic | 40.0% |
| !!! | GGTAGTTCTCTCTTTTTTCC+GGG | - | chr5.3:51274530-51274549 | None:intergenic | 40.0% |
| !!! | TAGGGTTTTGGTAACGGTAA+CGG | - | chr5.3:51273049-51273068 | None:intergenic | 40.0% |
| !!! | TCGACTCCGCATTTTTTAAG+GGG | - | chr5.3:51274551-51274570 | None:intergenic | 40.0% |
| ACGGTTGTGGATGTGAGAAA+TGG | - | chr5.3:51273024-51273043 | None:intergenic | 45.0% | |
| ACTGCCGAAGCGATAAACAA+AGG | - | chr5.3:51273113-51273132 | None:intergenic | 45.0% | |
| AGCAAGGGATTTCAAGCTTG+GGG | + | chr5.3:51274642-51274661 | MS.gene043890:CDS | 45.0% | |
| CACATGTTCCTATGGCTAAG+AGG | - | chr5.3:51272896-51272915 | None:intergenic | 45.0% | |
| CTCTTAGCCATAGGAACATG+TGG | + | chr5.3:51272894-51272913 | MS.gene043890:CDS | 45.0% | |
| GAAGCAAGGGATTTCAAGCT+TGG | + | chr5.3:51274640-51274659 | MS.gene043890:CDS | 45.0% | |
| GATTTCGCAGGTGATTCCAA+GGG | + | chr5.3:51274618-51274637 | MS.gene043890:intron | 45.0% | |
| GTAGAGGTAGTCGTCTAAAC+CGG | - | chr5.3:51273150-51273169 | None:intergenic | 45.0% | |
| TGCCAAAACAACACTCCCAA+GGG | - | chr5.3:51273312-51273331 | None:intergenic | 45.0% | |
| TGTGCCTCTTCATTGCTATC+TGG | + | chr5.3:51274745-51274764 | MS.gene043890:CDS | 45.0% | |
| TTAGCCATAGGAACATGTGG+TGG | + | chr5.3:51272897-51272916 | MS.gene043890:CDS | 45.0% | |
| TTGAAATCCCTTGCTTCCCT+TGG | - | chr5.3:51274637-51274656 | None:intergenic | 45.0% | |
| TTGGGAAGGCAGATGTTTCA+AGG | - | chr5.3:51272983-51273002 | None:intergenic | 45.0% | |
| TTTATCGCTTCGGCAGTCAT+CGG | + | chr5.3:51273116-51273135 | MS.gene043890:CDS | 45.0% | |
| ! | TGTTGTTGCCGTTAGGGTTT+TGG | - | chr5.3:51273061-51273080 | None:intergenic | 45.0% |
| ! | TTGGCACTGAATTCTGATGG+TGG | + | chr5.3:51273326-51273345 | MS.gene043890:CDS | 45.0% |
| !! | GATGGTGGAGATAGACTTGT+TGG | + | chr5.3:51273341-51273360 | MS.gene043890:CDS | 45.0% |
| !! | TGCCGTTAGGGTTTTGGTAA+CGG | - | chr5.3:51273055-51273074 | None:intergenic | 45.0% |
| !! | TGCTTTGGTGCTCTCACTTT+GGG | + | chr5.3:51274852-51274871 | MS.gene043890:CDS | 45.0% |
| !! | TTGCTTTGGTGCTCTCACTT+TGG | + | chr5.3:51274851-51274870 | MS.gene043890:CDS | 45.0% |
| !! | TTGGCTTCTGCTGCTTTGTA+TGG | + | chr5.3:51273404-51273423 | MS.gene043890:CDS | 45.0% |
| !!! | TCTCTCTTTTTTCCGGGCTA+GGG | - | chr5.3:51274524-51274543 | None:intergenic | 45.0% |
| !!! | TTCTCTCTTTTTTCCGGGCT+AGG | - | chr5.3:51274525-51274544 | None:intergenic | 45.0% |
| !! | ATGTTTAATTAATATTTAAT+TGG | - | chr5.3:51274429-51274448 | None:intergenic | 5.0% |
| AGCAGAGAAAGGGGTTGCTT+TGG | + | chr5.3:51274837-51274856 | MS.gene043890:CDS | 50.0% | |
| AGGTGATTCCAAGGGAAGCA+AGG | + | chr5.3:51274626-51274645 | MS.gene043890:intron | 50.0% | |
| CACGGTGAAAGCTAAGTGTG+AGG | - | chr5.3:51273222-51273241 | None:intergenic | 50.0% | |
| CGATTTCGCAGGTGATTCCA+AGG | + | chr5.3:51274617-51274636 | MS.gene043890:intron | 50.0% | |
| GCCGAAGCGATAAACAAAGG+TGG | - | chr5.3:51273110-51273129 | None:intergenic | 50.0% | |
| GGTGATTCCAAGGGAAGCAA+GGG | + | chr5.3:51274627-51274646 | MS.gene043890:intron | 50.0% | |
| GTGCCAAAACAACACTCCCA+AGG | - | chr5.3:51273313-51273332 | None:intergenic | 50.0% | |
| TGGTCCACCACATGTTCCTA+TGG | - | chr5.3:51272904-51272923 | None:intergenic | 50.0% | |
| ! | AACGGTAACGGTAACGGTTG+TGG | - | chr5.3:51273037-51273056 | None:intergenic | 50.0% |
| ! | CTCACACTTAGCTTTCACCG+TGG | + | chr5.3:51273220-51273239 | MS.gene043890:CDS | 50.0% |
| !! | GCTTTGGTGCTCTCACTTTG+GGG | + | chr5.3:51274853-51274872 | MS.gene043890:CDS | 50.0% |
| !!! | CTCTCTTTTTTCCGGGCTAG+GGG | - | chr5.3:51274523-51274542 | None:intergenic | 50.0% |
| !!! | GACCCTTGGGAGTGTTGTTT+TGG | + | chr5.3:51273307-51273326 | MS.gene043890:CDS | 50.0% |
| ATAACAAGAGGCCCCTAGCC+CGG | + | chr5.3:51274509-51274528 | MS.gene043890:intron | 55.0% | |
| GCAGTCATCGGAGTTCTCAC+CGG | + | chr5.3:51273128-51273147 | MS.gene043890:CDS | 55.0% | |
| TCCATGGCGGCAAACGTGTA+TGG | + | chr5.3:51272946-51272965 | MS.gene043890:CDS | 55.0% | |
| ! | CTGCGGCATAAAGCGTCTAC+CGG | + | chr5.3:51273172-51273191 | MS.gene043890:CDS | 55.0% |
| CGGTAGACGCTTTATGCCGC+AGG | - | chr5.3:51273174-51273193 | None:intergenic | 60.0% | |
| GACGACTACCTCTACGCCTG+CGG | + | chr5.3:51273155-51273174 | MS.gene043890:CDS | 60.0% | |
| GCCATACACGTTTGCCGCCA+TGG | - | chr5.3:51272950-51272969 | None:intergenic | 60.0% | |
| GCTTTATGCCGCAGGCGTAG+AGG | - | chr5.3:51273166-51273185 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 51272813 | 51274969 | 51272813 | ID=MS.gene043890 |
| chr5.3 | mRNA | 51272813 | 51274969 | 51272813 | ID=MS.gene043890.t1;Parent=MS.gene043890 |
| chr5.3 | exon | 51272813 | 51273571 | 51272813 | ID=MS.gene043890.t1.exon1;Parent=MS.gene043890.t1 |
| chr5.3 | CDS | 51272813 | 51273571 | 51272813 | ID=cds.MS.gene043890.t1;Parent=MS.gene043890.t1 |
| chr5.3 | exon | 51274628 | 51274969 | 51274628 | ID=MS.gene043890.t1.exon2;Parent=MS.gene043890.t1 |
| chr5.3 | CDS | 51274628 | 51274969 | 51274628 | ID=cds.MS.gene043890.t1;Parent=MS.gene043890.t1 |
| Gene Sequence |
| Protein sequence |
