Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010610.t1 | XP_003612146.1 | 100 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 2.10E-147 | 531.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010610.t1 | Q42064 | 92.6 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 5.6e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010610.t1 | G7JW56 | 100.0 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 1.5e-147 | 531.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52229 | MS.gene010610 | PPI |
| MS.gene023860 | MS.gene010610 | PPI |
| MS.gene68049 | MS.gene010610 | PPI |
| MS.gene59457 | MS.gene010610 | PPI |
| MS.gene27714 | MS.gene010610 | PPI |
| MS.gene64754 | MS.gene010610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010610.t1 | MTR_5g021800 | 100.000 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 0.0 | 527 |
| MS.gene010610.t1 | MTR_7g076940 | 95.736 | 258 | 11 | 0 | 1 | 258 | 1 | 258 | 0.0 | 508 |
| MS.gene010610.t1 | MTR_2g015360 | 39.316 | 117 | 65 | 3 | 98 | 214 | 51 | 161 | 4.00e-18 | 80.1 |
| MS.gene010610.t1 | MTR_3g035710 | 39.815 | 108 | 58 | 3 | 107 | 214 | 1 | 101 | 6.00e-16 | 73.2 |
| MS.gene010610.t1 | MTR_0002s0800 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.54e-13 | 67.4 |
| MS.gene010610.t1 | MTR_0002s0360 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.54e-13 | 67.4 |
| MS.gene010610.t1 | MTR_3g037420 | 37.113 | 97 | 54 | 3 | 119 | 215 | 8 | 97 | 9.75e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010610.t1 | AT4G36130 | 92.636 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 1.20e-180 | 496 |
| MS.gene010610.t1 | AT2G18020 | 91.860 | 258 | 21 | 0 | 1 | 258 | 1 | 258 | 7.25e-175 | 482 |
| MS.gene010610.t1 | AT3G51190 | 84.519 | 239 | 36 | 1 | 1 | 238 | 1 | 239 | 5.61e-152 | 424 |
| MS.gene010610.t1 | ATCG00830 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 2.22e-24 | 99.0 |
| MS.gene010610.t1 | ATCG01310 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 2.22e-24 | 99.0 |
| MS.gene010610.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
| MS.gene010610.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
| MS.gene010610.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
Find 83 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGCTTACCACAAATTT+AGG | 0.139039 | 5.1:-13002502 | MS.gene010610:CDS |
| TTCTGTTTCTTATATCTAAA+AGG | 0.141313 | 5.1:+13004094 | None:intergenic |
| GCGAGATGGGTAGGGTTATC+AGG | 0.218220 | 5.1:-13004294 | None:intergenic |
| GCTAGTGGTGCACCGCGACC+TGG | 0.291779 | 5.1:+13004136 | None:intergenic |
| CCTTCAGGAATCATCCTTAA+TGG | 0.296951 | 5.1:+13003983 | None:intergenic |
| TAATGCTTACCACAAATTTA+GGG | 0.348170 | 5.1:-13002501 | MS.gene010610:CDS |
| AACCTAGAGGTATCATTATC+AGG | 0.354338 | 5.1:+13003869 | None:intergenic |
| GGCCTTTGCGATGGTGGGTG+TGG | 0.359733 | 5.1:+13004236 | None:intergenic |
| TCCTCTTCACCCTAAATTTG+TGG | 0.369145 | 5.1:+13002492 | None:intergenic |
| AAATAGTCTTATCAGTTAAT+CGG | 0.370160 | 5.1:+13002280 | None:intergenic |
| CGTTTCCGCAGTCTCGATTT+CGG | 0.389930 | 5.1:-13004208 | MS.gene010610:CDS |
| GCTATGATTGGGCAAGTTGC+AGG | 0.391634 | 5.1:-13002560 | MS.gene010610:CDS |
| AGCTGCTTCCGCTGCTGCTA+AGG | 0.391726 | 5.1:-13002303 | MS.gene010610:CDS |
| CTAAGAGAACTGGTCGTCTC+AGG | 0.393643 | 5.1:-13002331 | MS.gene010610:CDS |
| TTTCGTTCACTACTCCTTTG+AGG | 0.415458 | 5.1:+13004170 | None:intergenic |
| CTGGACAGTTTATTTATTGT+GGG | 0.419100 | 5.1:-13004039 | MS.gene010610:CDS |
| GCCTTTGCGATGGTGGGTGT+GGG | 0.420149 | 5.1:+13004237 | None:intergenic |
| TTACAAATAACCGCACCTTC+AGG | 0.420706 | 5.1:+13003968 | None:intergenic |
| CCTCCATGAGGATGTTCAAC+TGG | 0.422258 | 5.1:+13002434 | None:intergenic |
| GACAGGATTAAGCTACCATC+AGG | 0.430549 | 5.1:-13002614 | MS.gene010610:intron |
| TTAGGGTGAAGAGGAATTGT+TGG | 0.435774 | 5.1:-13002484 | MS.gene010610:CDS |
| TCTGTTTCTTATATCTAAAA+GGG | 0.435806 | 5.1:+13004095 | None:intergenic |
| GTTAGGCGTGATGCTCCTCC+TGG | 0.436286 | 5.1:-13002377 | MS.gene010610:CDS |
| CTCATTGCTGCTAAGAGAAC+TGG | 0.437152 | 5.1:-13002341 | MS.gene010610:CDS |
| TCGAGACTGCGGAAACGTGC+TGG | 0.440209 | 5.1:+13004214 | None:intergenic |
| ACTGGACAGTTTATTTATTG+TGG | 0.444957 | 5.1:-13004040 | MS.gene010610:CDS |
| AACTGAGAAGCCAATGCTTA+AGG | 0.445753 | 5.1:-13002528 | MS.gene010610:CDS |
| GGAGGTAACCACCAGCATAT+TGG | 0.446084 | 5.1:-13002413 | MS.gene010610:CDS |
| CTCGATTTCGGTGAAAGAAA+CGG | 0.463830 | 5.1:-13004196 | MS.gene010610:CDS |
| GCATTACCAGCCTTAAGCAT+TGG | 0.465748 | 5.1:+13002518 | None:intergenic |
| AGTGAGTGCAGAGCTATGAT+TGG | 0.480414 | 5.1:-13002572 | MS.gene010610:CDS |
| TGCTGGGCCTTTGCGATGGT+GGG | 0.484311 | 5.1:+13004231 | None:intergenic |
| AGGTTTCCGGCGAGATGGGT+AGG | 0.490187 | 5.1:-13004303 | None:intergenic |
| CGAGACTGCGGAAACGTGCT+GGG | 0.490564 | 5.1:+13004215 | None:intergenic |
| TTGGACATGCTAGTACTGTT+AGG | 0.490772 | 5.1:-13002394 | MS.gene010610:CDS |
| CTAGTGGTGCACCGCGACCT+GGG | 0.492115 | 5.1:+13004137 | None:intergenic |
| GTGCTGGGCCTTTGCGATGG+TGG | 0.492579 | 5.1:+13004230 | None:intergenic |
| ATCATAGCTCTGCACTCACT+TGG | 0.492967 | 5.1:+13002575 | None:intergenic |
| ACAATCTTCTTTGCCCCTGA+TGG | 0.501695 | 5.1:+13002599 | None:intergenic |
| AATTGTTGGCCTAAGGTTCG+TGG | 0.507434 | 5.1:-13002470 | MS.gene010610:CDS |
| GCTCCTCCTGGACAGAAGGT+TGG | 0.508354 | 5.1:-13002365 | MS.gene010610:CDS |
| GAAGAGGAATTGTTGGCCTA+AGG | 0.511303 | 5.1:-13002477 | MS.gene010610:CDS |
| ATCATTCACGACCCAGGTCG+CGG | 0.520973 | 5.1:-13004148 | MS.gene010610:CDS |
| ATGAGACCAACCTTCTGTCC+AGG | 0.521573 | 5.1:+13002359 | None:intergenic |
| ATTGGGCAAGTTGCAGGTGG+AGG | 0.539757 | 5.1:-13002554 | MS.gene010610:CDS |
| GTGAGTGCAGAGCTATGATT+GGG | 0.540155 | 5.1:-13002571 | MS.gene010610:CDS |
| GGTTTCCGGCGAGATGGGTA+GGG | 0.540978 | 5.1:-13004302 | None:intergenic |
| TACTAGCATGTCCAATATGC+TGG | 0.543123 | 5.1:+13002402 | None:intergenic |
| GTGGGTGTGGGACTTGAAAA+CGG | 0.548294 | 5.1:+13004249 | None:intergenic |
| GAGAAGCCAATGCTTAAGGC+TGG | 0.549710 | 5.1:-13002524 | MS.gene010610:CDS |
| TGATGCTCCTCCTGGACAGA+AGG | 0.551156 | 5.1:-13002369 | MS.gene010610:CDS |
| ACCACAAATTTAGGGTGAAG+AGG | 0.551702 | 5.1:-13002493 | MS.gene010610:CDS |
| TCTTATATCTAAAAGGGTGT+CGG | 0.552820 | 5.1:+13004101 | None:intergenic |
| AGGGCACAACGTAAAGGAGC+AGG | 0.552983 | 5.1:-13004274 | MS.gene010610:CDS |
| CGAGATGGGTAGGGTTATCA+GGG | 0.554090 | 5.1:-13004293 | None:intergenic |
| GAAAGAAACGGTTACCTCAA+AGG | 0.558738 | 5.1:-13004184 | MS.gene010610:CDS |
| GTTATCAGGGCACAACGTAA+AGG | 0.562139 | 5.1:-13004280 | MS.gene010610:CDS |
| AACGAAATCATTCACGACCC+AGG | 0.570840 | 5.1:-13004154 | MS.gene010610:CDS |
| TAAGAGAACTGGTCGTCTCA+GGG | 0.573235 | 5.1:-13002330 | MS.gene010610:CDS |
| TCGCGGTGCACCACTAGCTA+AGG | 0.577052 | 5.1:-13004131 | MS.gene010610:CDS |
| AATCCAGTTGAACATCCTCA+TGG | 0.581222 | 5.1:-13002437 | MS.gene010610:CDS |
| AACGTGCTGGGCCTTTGCGA+TGG | 0.587555 | 5.1:+13004227 | None:intergenic |
| GCTGCTGAGGGACTTTACAC+TGG | 0.588705 | 5.1:-13004058 | MS.gene010610:CDS |
| TGTAATGTTGAACATCATGT+TGG | 0.589500 | 5.1:-13003950 | MS.gene010610:CDS |
| ATAGCCACACCACGAACCTT+AGG | 0.594313 | 5.1:+13002461 | None:intergenic |
| TCCCACACCCACCATCGCAA+AGG | 0.598343 | 5.1:-13004238 | MS.gene010610:CDS |
| CCATTAAGGATGATTCCTGA+AGG | 0.598808 | 5.1:-13003983 | MS.gene010610:CDS |
| TTGGCCTAAGGTTCGTGGTG+TGG | 0.606540 | 5.1:-13002465 | MS.gene010610:CDS |
| ACAGGATTAAGCTACCATCA+GGG | 0.606815 | 5.1:-13002613 | MS.gene010610:intron |
| GTTGAACATCCTCATGGAGG+AGG | 0.607255 | 5.1:-13002431 | MS.gene010610:CDS |
| ATCCTGATAATGATACCTCT+AGG | 0.627712 | 5.1:-13003871 | MS.gene010610:intron |
| ATGATTGGGCAAGTTGCAGG+TGG | 0.627869 | 5.1:-13002557 | MS.gene010610:CDS |
| AAGGATGATTCCTGAAGGTG+CGG | 0.634290 | 5.1:-13003978 | MS.gene010610:CDS |
| CAGGATTAAGCTACCATCAG+GGG | 0.634909 | 5.1:-13002612 | MS.gene010610:CDS |
| TTAATCGGCCTTAGCAGCAG+CGG | 0.643504 | 5.1:+13002295 | None:intergenic |
| GAACATCATGTTGGTGATCG+TGG | 0.646474 | 5.1:-13003941 | MS.gene010610:CDS |
| TTTCACCGAAATCGAGACTG+CGG | 0.661724 | 5.1:+13004203 | None:intergenic |
| TAGCATGTCCAATATGCTGG+TGG | 0.670638 | 5.1:+13002405 | None:intergenic |
| CGGAATGTGACCTTAGCTAG+TGG | 0.672073 | 5.1:+13004121 | None:intergenic |
| AAGAGAACTGGTCGTCTCAG+GGG | 0.684178 | 5.1:-13002329 | MS.gene010610:CDS |
| TGGTGGTTACCTCCTCCATG+AGG | 0.690890 | 5.1:+13002422 | None:intergenic |
| AGACCAACCTTCTGTCCAGG+AGG | 0.695738 | 5.1:+13002362 | None:intergenic |
| CCAGTTGAACATCCTCATGG+AGG | 0.726090 | 5.1:-13002434 | MS.gene010610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACAAATATGATTTG+TGG | - | chr5.1:13002844-13002863 | MS.gene010610:intron | 15.0% |
| !! | TATAAAAATTTCAATTACGT+GGG | - | chr5.1:13003796-13003815 | MS.gene010610:intron | 15.0% |
| !! | TGCAATATGTTAATTAAAAA+TGG | + | chr5.1:13002794-13002813 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTAACATATTGC+AGG | - | chr5.1:13002793-13002812 | MS.gene010610:intron | 15.0% |
| !! | CTTAAAAATTTGAATGATGT+GGG | - | chr5.1:13003450-13003469 | MS.gene010610:intron | 20.0% |
| !! | GTATAAAAATTTCAATTACG+TGG | - | chr5.1:13003795-13003814 | MS.gene010610:intron | 20.0% |
| !! | TTAATTAACATTAGCAAAGA+TGG | - | chr5.1:13003079-13003098 | MS.gene010610:intron | 20.0% |
| !!! | ATTTAACTTTTACTGATGAT+GGG | - | chr5.1:13003932-13003951 | MS.gene010610:CDS | 20.0% |
| !!! | TATTTAACTTTTACTGATGA+TGG | - | chr5.1:13003931-13003950 | MS.gene010610:CDS | 20.0% |
| !!! | TCTGTTTCTTATATCTAAAA+GGG | + | chr5.1:13002492-13002511 | None:intergenic | 20.0% |
| !!! | TTCTGTTTCTTATATCTAAA+AGG | + | chr5.1:13002493-13002512 | None:intergenic | 20.0% |
| ! | AATTAGAAATGACAATGTTG+GGG | - | chr5.1:13003142-13003161 | MS.gene010610:intron | 25.0% |
| ! | AGAATTAGAAATGACAATGT+TGG | - | chr5.1:13003140-13003159 | MS.gene010610:intron | 25.0% |
| ! | ATGACACACTAATTTCTAAA+TGG | + | chr5.1:13003009-13003028 | None:intergenic | 25.0% |
| ! | GAATTAGAAATGACAATGTT+GGG | - | chr5.1:13003141-13003160 | MS.gene010610:intron | 25.0% |
| ! | GCTTAAAAATTTGAATGATG+TGG | - | chr5.1:13003449-13003468 | MS.gene010610:intron | 25.0% |
| ! | TAATGCTTACCACAAATTTA+GGG | - | chr5.1:13004083-13004102 | MS.gene010610:CDS | 25.0% |
| ! | TATAAACGCAGTTACATTTA+TGG | + | chr5.1:13003644-13003663 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACTAGTAAGA+AGG | - | chr5.1:13003311-13003330 | MS.gene010610:intron | 25.0% |
| !! | CTTTTTGATAGAACACTATA+AGG | - | chr5.1:13003366-13003385 | MS.gene010610:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr5.1:13003303-13003322 | None:intergenic | 25.0% |
| AAAATGTGGATTCTGTAGTA+AGG | - | chr5.1:13003229-13003248 | MS.gene010610:intron | 30.0% | |
| AAAATTTCAATTACGTGGGA+TGG | - | chr5.1:13003800-13003819 | MS.gene010610:intron | 30.0% | |
| ACTGGACAGTTTATTTATTG+TGG | - | chr5.1:13002544-13002563 | MS.gene010610:CDS | 30.0% | |
| AGATAGTAAGAACTAGACTT+TGG | - | chr5.1:13003190-13003209 | MS.gene010610:intron | 30.0% | |
| ATTAGAAATGACAATGTTGG+GGG | - | chr5.1:13003143-13003162 | MS.gene010610:intron | 30.0% | |
| CTGGACAGTTTATTTATTGT+GGG | - | chr5.1:13002545-13002564 | MS.gene010610:CDS | 30.0% | |
| GTAATGCTTACCACAAATTT+AGG | - | chr5.1:13004082-13004101 | MS.gene010610:CDS | 30.0% | |
| GTTAATCAATCATAACTGTC+CGG | - | chr5.1:13003601-13003620 | MS.gene010610:intron | 30.0% | |
| TATGTTAATGTACTTCGTAG+TGG | - | chr5.1:13002886-13002905 | MS.gene010610:intron | 30.0% | |
| TGTAATGTTGAACATCATGT+TGG | - | chr5.1:13002634-13002653 | MS.gene010610:intron | 30.0% | |
| ! | AAAAAAGCTACTCTTGTTGT+TGG | - | chr5.1:13002568-13002587 | MS.gene010610:CDS | 30.0% |
| ! | AATATGATTTGTGGTGATGA+TGG | - | chr5.1:13002853-13002872 | MS.gene010610:intron | 30.0% |
| ! | TCTTATATCTAAAAGGGTGT+CGG | + | chr5.1:13002486-13002505 | None:intergenic | 30.0% |
| ! | TGTGAAACTTTTTGTACTTC+TGG | - | chr5.1:13003696-13003715 | MS.gene010610:intron | 30.0% |
| ! | TTGGAAATGTTTTGCCATTA+AGG | - | chr5.1:13002587-13002606 | MS.gene010610:CDS | 30.0% |
| AGTAAGGAGAGTAGATTAGA+TGG | - | chr5.1:13003245-13003264 | MS.gene010610:intron | 35.0% | |
| CAAAGATGGAGATGTAACAT+GGG | - | chr5.1:13003093-13003112 | MS.gene010610:intron | 35.0% | |
| CTTACTATCTTTCCTACTGT+AGG | + | chr5.1:13003180-13003199 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | - | chr5.1:13003332-13003351 | MS.gene010610:intron | 35.0% | |
| GTGCATGGAAATTATACTCT+TGG | - | chr5.1:13003718-13003737 | MS.gene010610:intron | 35.0% | |
| TAGTAAGAACTAGACTTTGG+TGG | - | chr5.1:13003193-13003212 | MS.gene010610:intron | 35.0% | |
| ! | ATCCTGATAATGATACCTCT+AGG | - | chr5.1:13002713-13002732 | MS.gene010610:intron | 35.0% |
| !! | AACCTAGAGGTATCATTATC+AGG | + | chr5.1:13002718-13002737 | None:intergenic | 35.0% |
| !!! | GGTGTTCATGTTTTTTTGAC+AGG | - | chr5.1:13003953-13003972 | MS.gene010610:CDS | 35.0% |
| AACTGAGAAGCCAATGCTTA+AGG | - | chr5.1:13004056-13004075 | MS.gene010610:CDS | 40.0% | |
| AAGGAGAGTAGATTAGATGG+AGG | - | chr5.1:13003248-13003267 | MS.gene010610:intron | 40.0% | |
| AATCCAGTTGAACATCCTCA+TGG | - | chr5.1:13004147-13004166 | MS.gene010610:CDS | 40.0% | |
| ACAGGATTAAGCTACCATCA+GGG | - | chr5.1:13003971-13003990 | MS.gene010610:CDS | 40.0% | |
| AGGAGAGTAGATTAGATGGA+GGG | - | chr5.1:13003249-13003268 | MS.gene010610:intron | 40.0% | |
| CACATACACGAAAGTTTACG+TGG | - | chr5.1:13003579-13003598 | MS.gene010610:intron | 40.0% | |
| CCATTAAGGATGATTCCTGA+AGG | - | chr5.1:13002601-13002620 | MS.gene010610:CDS | 40.0% | |
| CCTTCAGGAATCATCCTTAA+TGG | + | chr5.1:13002604-13002623 | None:intergenic | 40.0% | |
| CTCGATTTCGGTGAAAGAAA+CGG | - | chr5.1:13002388-13002407 | MS.gene010610:CDS | 40.0% | |
| GAAAGAAACGGTTACCTCAA+AGG | - | chr5.1:13002400-13002419 | MS.gene010610:CDS | 40.0% | |
| GCAAAGATGGAGATGTAACA+TGG | - | chr5.1:13003092-13003111 | MS.gene010610:intron | 40.0% | |
| TACTAGCATGTCCAATATGC+TGG | + | chr5.1:13004185-13004204 | None:intergenic | 40.0% | |
| TCCTCTTCACCCTAAATTTG+TGG | + | chr5.1:13004095-13004114 | None:intergenic | 40.0% | |
| TTACAAATAACCGCACCTTC+AGG | + | chr5.1:13002619-13002638 | None:intergenic | 40.0% | |
| TTAGGGTGAAGAGGAATTGT+TGG | - | chr5.1:13004100-13004119 | MS.gene010610:CDS | 40.0% | |
| TTGGACATGCTAGTACTGTT+AGG | - | chr5.1:13004190-13004209 | MS.gene010610:CDS | 40.0% | |
| TTTCGTTCACTACTCCTTTG+AGG | + | chr5.1:13002417-13002436 | None:intergenic | 40.0% | |
| ! | ACCACAAATTTAGGGTGAAG+AGG | - | chr5.1:13004091-13004110 | MS.gene010610:CDS | 40.0% |
| ! | AGAACTAGACTTTGGTGGTT+TGG | - | chr5.1:13003198-13003217 | MS.gene010610:intron | 40.0% |
| ! | CTTTTTGTACTTCTGGTGCA+TGG | - | chr5.1:13003703-13003722 | MS.gene010610:intron | 40.0% |
| ! | GAACTAGACTTTGGTGGTTT+GGG | - | chr5.1:13003199-13003218 | MS.gene010610:intron | 40.0% |
| AACGAAATCATTCACGACCC+AGG | - | chr5.1:13002430-13002449 | MS.gene010610:CDS | 45.0% | |
| AAGGATGATTCCTGAAGGTG+CGG | - | chr5.1:13002606-13002625 | MS.gene010610:CDS | 45.0% | |
| ACAATCTTCTTTGCCCCTGA+TGG | + | chr5.1:13003988-13004007 | None:intergenic | 45.0% | |
| AGTGAGTGCAGAGCTATGAT+TGG | - | chr5.1:13004012-13004031 | MS.gene010610:CDS | 45.0% | |
| CAGGATTAAGCTACCATCAG+GGG | - | chr5.1:13003972-13003991 | MS.gene010610:CDS | 45.0% | |
| CTCATTGCTGCTAAGAGAAC+TGG | - | chr5.1:13004243-13004262 | MS.gene010610:CDS | 45.0% | |
| CTTATCCCACTATGTGGGAT+CGG | + | chr5.1:13003409-13003428 | None:intergenic | 45.0% | |
| GACAGGATTAAGCTACCATC+AGG | - | chr5.1:13003970-13003989 | MS.gene010610:CDS | 45.0% | |
| GAGATGTAACATGGGATGTG+TGG | - | chr5.1:13003101-13003120 | MS.gene010610:intron | 45.0% | |
| GAGGGAAGTCAAATCACTAG+AGG | - | chr5.1:13003267-13003286 | MS.gene010610:intron | 45.0% | |
| GATGTGTGGAAAGACTAGAC+GGG | - | chr5.1:13003115-13003134 | MS.gene010610:intron | 45.0% | |
| GCATTACCAGCCTTAAGCAT+TGG | + | chr5.1:13004069-13004088 | None:intergenic | 45.0% | |
| GGATGTGTGGAAAGACTAGA+CGG | - | chr5.1:13003114-13003133 | MS.gene010610:intron | 45.0% | |
| GGTCAAGCAACTTGTATGAC+CGG | + | chr5.1:13003623-13003642 | None:intergenic | 45.0% | |
| GTGAGAGAGAACAAACCTAG+AGG | + | chr5.1:13002731-13002750 | None:intergenic | 45.0% | |
| GTGAGTGCAGAGCTATGATT+GGG | - | chr5.1:13004013-13004032 | MS.gene010610:CDS | 45.0% | |
| GTTATCAGGGCACAACGTAA+AGG | - | chr5.1:13002304-13002323 | MS.gene010610:CDS | 45.0% | |
| GTTTGGGCATGTGGAAAATG+TGG | - | chr5.1:13003215-13003234 | MS.gene010610:intron | 45.0% | |
| TAAGAGAACTGGTCGTCTCA+GGG | - | chr5.1:13004254-13004273 | MS.gene010610:CDS | 45.0% | |
| TAGCATGTCCAATATGCTGG+TGG | + | chr5.1:13004182-13004201 | None:intergenic | 45.0% | |
| TCAATTACGTGGGATGGTGA+TGG | - | chr5.1:13003806-13003825 | MS.gene010610:intron | 45.0% | |
| TTTCACCGAAATCGAGACTG+CGG | + | chr5.1:13002384-13002403 | None:intergenic | 45.0% | |
| ! | AATTGTTGGCCTAAGGTTCG+TGG | - | chr5.1:13004114-13004133 | MS.gene010610:CDS | 45.0% |
| ! | ATCATAGCTCTGCACTCACT+TGG | + | chr5.1:13004012-13004031 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTATGT+GGG | + | chr5.1:13003414-13003433 | None:intergenic | 45.0% |
| ! | GAAGAGGAATTGTTGGCCTA+AGG | - | chr5.1:13004107-13004126 | MS.gene010610:CDS | 45.0% |
| !! | GAACATCATGTTGGTGATCG+TGG | - | chr5.1:13002643-13002662 | MS.gene010610:intron | 45.0% |
| AAGAGAACTGGTCGTCTCAG+GGG | - | chr5.1:13004255-13004274 | MS.gene010610:CDS | 50.0% | |
| ATAGCCACACCACGAACCTT+AGG | + | chr5.1:13004126-13004145 | None:intergenic | 50.0% | |
| ATGAGACCAACCTTCTGTCC+AGG | + | chr5.1:13004228-13004247 | None:intergenic | 50.0% | |
| ATGATTGGGCAAGTTGCAGG+TGG | - | chr5.1:13004027-13004046 | MS.gene010610:CDS | 50.0% | |
| ATGTAGCCGATCCCACATAG+TGG | - | chr5.1:13003400-13003419 | MS.gene010610:intron | 50.0% | |
| CCAGTTGAACATCCTCATGG+AGG | - | chr5.1:13004150-13004169 | MS.gene010610:CDS | 50.0% | |
| CCTCCATGAGGATGTTCAAC+TGG | + | chr5.1:13004153-13004172 | None:intergenic | 50.0% | |
| CGGAATGTGACCTTAGCTAG+TGG | + | chr5.1:13002466-13002485 | None:intergenic | 50.0% | |
| CGTTTCCGCAGTCTCGATTT+CGG | - | chr5.1:13002376-13002395 | MS.gene010610:CDS | 50.0% | |
| CTAAGAGAACTGGTCGTCTC+AGG | - | chr5.1:13004253-13004272 | MS.gene010610:CDS | 50.0% | |
| GAGAAGCCAATGCTTAAGGC+TGG | - | chr5.1:13004060-13004079 | MS.gene010610:CDS | 50.0% | |
| GCTATGATTGGGCAAGTTGC+AGG | - | chr5.1:13004024-13004043 | MS.gene010610:CDS | 50.0% | |
| GGAGGTAACCACCAGCATAT+TGG | - | chr5.1:13004171-13004190 | MS.gene010610:CDS | 50.0% | |
| GTAGCACTAGCACCTACAGT+AGG | - | chr5.1:13003165-13003184 | MS.gene010610:intron | 50.0% | |
| GTGGGTGTGGGACTTGAAAA+CGG | + | chr5.1:13002338-13002357 | None:intergenic | 50.0% | |
| GTTGAACATCCTCATGGAGG+AGG | - | chr5.1:13004153-13004172 | MS.gene010610:CDS | 50.0% | |
| TGTAGCCGATCCCACATAGT+GGG | - | chr5.1:13003401-13003420 | MS.gene010610:intron | 50.0% | |
| TTAATCGGCCTTAGCAGCAG+CGG | + | chr5.1:13004292-13004311 | None:intergenic | 50.0% | |
| ! | ACTTTGGTGGTTTGGGCATG+TGG | - | chr5.1:13003206-13003225 | MS.gene010610:intron | 50.0% |
| ! | AGAGCTTTTCGTTGCTGCTG+AGG | - | chr5.1:13002513-13002532 | MS.gene010610:CDS | 50.0% |
| ! | CCAAGCCTTATCCCACTATG+TGG | + | chr5.1:13003415-13003434 | None:intergenic | 50.0% |
| ! | CCACATAGTGGGATAAGGCT+TGG | - | chr5.1:13003412-13003431 | MS.gene010610:intron | 50.0% |
| ! | CGATCCCACATAGTGGGATA+AGG | - | chr5.1:13003407-13003426 | MS.gene010610:intron | 50.0% |
| ! | GAGCTTTTCGTTGCTGCTGA+GGG | - | chr5.1:13002514-13002533 | MS.gene010610:CDS | 50.0% |
| ! | GGTGCTTTTGCTAGGTGTTC+TGG | - | chr5.1:13002664-13002683 | MS.gene010610:intron | 50.0% |
| ! | GTGATCGTGGTGCTTTTGCT+AGG | - | chr5.1:13002656-13002675 | MS.gene010610:intron | 50.0% |
| AGACCAACCTTCTGTCCAGG+AGG | + | chr5.1:13004225-13004244 | None:intergenic | 55.0% | |
| AGGGCACAACGTAAAGGAGC+AGG | - | chr5.1:13002310-13002329 | MS.gene010610:CDS | 55.0% | |
| ATCATTCACGACCCAGGTCG+CGG | - | chr5.1:13002436-13002455 | MS.gene010610:CDS | 55.0% | |
| ATTGGGCAAGTTGCAGGTGG+AGG | - | chr5.1:13004030-13004049 | MS.gene010610:CDS | 55.0% | |
| GCTGCTGAGGGACTTTACAC+TGG | - | chr5.1:13002526-13002545 | MS.gene010610:CDS | 55.0% | |
| TGATGCTCCTCCTGGACAGA+AGG | - | chr5.1:13004215-13004234 | MS.gene010610:CDS | 55.0% | |
| TGGTGGTTACCTCCTCCATG+AGG | + | chr5.1:13004165-13004184 | None:intergenic | 55.0% | |
| TTGGCCTAAGGTTCGTGGTG+TGG | - | chr5.1:13004119-13004138 | MS.gene010610:CDS | 55.0% | |
| AACGTGCTGGGCCTTTGCGA+TGG | + | chr5.1:13002360-13002379 | None:intergenic | 60.0% | |
| AGCTGCTTCCGCTGCTGCTA+AGG | - | chr5.1:13004281-13004300 | MS.gene010610:CDS | 60.0% | |
| CGAGACTGCGGAAACGTGCT+GGG | + | chr5.1:13002372-13002391 | None:intergenic | 60.0% | |
| GCTCCTCCTGGACAGAAGGT+TGG | - | chr5.1:13004219-13004238 | MS.gene010610:CDS | 60.0% | |
| GTTAGGCGTGATGCTCCTCC+TGG | - | chr5.1:13004207-13004226 | MS.gene010610:CDS | 60.0% | |
| TCCCACACCCACCATCGCAA+AGG | - | chr5.1:13002346-13002365 | MS.gene010610:CDS | 60.0% | |
| TCGAGACTGCGGAAACGTGC+TGG | + | chr5.1:13002373-13002392 | None:intergenic | 60.0% | |
| TCGCGGTGCACCACTAGCTA+AGG | - | chr5.1:13002453-13002472 | MS.gene010610:CDS | 60.0% | |
| TGCTGGGCCTTTGCGATGGT+GGG | + | chr5.1:13002356-13002375 | None:intergenic | 60.0% | |
| !! | GCCTTTGCGATGGTGGGTGT+GGG | + | chr5.1:13002350-13002369 | None:intergenic | 60.0% |
| CTAGTGGTGCACCGCGACCT+GGG | + | chr5.1:13002450-13002469 | None:intergenic | 65.0% | |
| GTGCTGGGCCTTTGCGATGG+TGG | + | chr5.1:13002357-13002376 | None:intergenic | 65.0% | |
| !! | GGCCTTTGCGATGGTGGGTG+TGG | + | chr5.1:13002351-13002370 | None:intergenic | 65.0% |
| GCTAGTGGTGCACCGCGACC+TGG | + | chr5.1:13002451-13002470 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 13002295 | 13004311 | 13002295 | ID=MS.gene010610 |
| chr5.1 | mRNA | 13002295 | 13004311 | 13002295 | ID=MS.gene010610.t1;Parent=MS.gene010610 |
| chr5.1 | exon | 13003872 | 13004311 | 13003872 | ID=MS.gene010610.t1.exon1;Parent=MS.gene010610.t1 |
| chr5.1 | CDS | 13003872 | 13004311 | 13003872 | ID=cds.MS.gene010610.t1;Parent=MS.gene010610.t1 |
| chr5.1 | exon | 13002295 | 13002631 | 13002295 | ID=MS.gene010610.t1.exon2;Parent=MS.gene010610.t1 |
| chr5.1 | CDS | 13002295 | 13002631 | 13002295 | ID=cds.MS.gene010610.t1;Parent=MS.gene010610.t1 |
| Gene Sequence |
| Protein sequence |
