Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59457.t1 | XP_003612146.1 | 99.6 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 6.10E-147 | 530 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59457.t1 | Q42064 | 92.6 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 1.2e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59457.t1 | G7JW56 | 99.6 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 4.4e-147 | 530.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene59457 | 0.804971 | 1.67E-49 | -1.69E-46 |
| MS.gene050252 | MS.gene59457 | 0.866882 | 2.06E-65 | -1.69E-46 |
| MS.gene057272 | MS.gene59457 | 0.814789 | 1.29E-51 | -1.69E-46 |
| MS.gene057321 | MS.gene59457 | 0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene59457 | 0.867402 | 1.41E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023860 | MS.gene59457 | PPI |
| MS.gene59457 | MS.gene64754 | PPI |
| MS.gene59457 | MS.gene52229 | PPI |
| MS.gene59457 | MS.gene010610 | PPI |
| MS.gene27714 | MS.gene59457 | PPI |
| MS.gene59457 | MS.gene68049 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59457.t1 | MTR_5g021800 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0.0 | 526 |
| MS.gene59457.t1 | MTR_7g076940 | 95.736 | 258 | 11 | 0 | 1 | 258 | 1 | 258 | 0.0 | 507 |
| MS.gene59457.t1 | MTR_2g015360 | 39.316 | 117 | 65 | 3 | 98 | 214 | 51 | 161 | 3.72e-18 | 80.5 |
| MS.gene59457.t1 | MTR_3g035710 | 39.815 | 108 | 58 | 3 | 107 | 214 | 1 | 101 | 4.36e-16 | 73.6 |
| MS.gene59457.t1 | MTR_0002s0800 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.04e-13 | 67.8 |
| MS.gene59457.t1 | MTR_0002s0360 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.04e-13 | 67.8 |
| MS.gene59457.t1 | MTR_3g037420 | 37.113 | 97 | 54 | 3 | 119 | 215 | 8 | 97 | 7.59e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59457.t1 | AT4G36130 | 92.636 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 1.96e-180 | 496 |
| MS.gene59457.t1 | AT2G18020 | 91.860 | 258 | 21 | 0 | 1 | 258 | 1 | 258 | 1.20e-174 | 481 |
| MS.gene59457.t1 | AT3G51190 | 84.100 | 239 | 37 | 1 | 1 | 238 | 1 | 239 | 1.26e-151 | 423 |
| MS.gene59457.t1 | ATCG00830 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 1.80e-24 | 99.0 |
| MS.gene59457.t1 | ATCG01310 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 1.80e-24 | 99.0 |
| MS.gene59457.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 6.81e-18 | 80.1 |
| MS.gene59457.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 6.81e-18 | 80.1 |
| MS.gene59457.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 6.81e-18 | 80.1 |
Find 84 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGCTTACCACAAATTT+AGG | 0.139039 | 5.4:-13461670 | MS.gene59457:CDS |
| TTCTGTTTCTTATATCTAAA+AGG | 0.141313 | 5.4:+13463145 | None:intergenic |
| TTTCGTTCACTACTCCTTTC+AGG | 0.192080 | 5.4:+13463221 | None:intergenic |
| GCGAGATGGGTAGGGTTATC+AGG | 0.218220 | 5.4:-13463345 | None:intergenic |
| GCTAGTGGTGCACCGCGGCC+TGG | 0.237243 | 5.4:+13463187 | None:intergenic |
| CCTTCAGGAATCATCCTTAA+AGG | 0.298932 | 5.4:+13463034 | None:intergenic |
| CTAGTGGTGCACCGCGGCCT+GGG | 0.347499 | 5.4:+13463188 | None:intergenic |
| TAATGCTTACCACAAATTTA+GGG | 0.348170 | 5.4:-13461669 | MS.gene59457:CDS |
| AACCTAGAGGTATCATTATC+AGG | 0.354338 | 5.4:+13462920 | None:intergenic |
| GGCCTTTGCGATGGTGGGTG+TGG | 0.359733 | 5.4:+13463287 | None:intergenic |
| TCCTCTTCACCCTAAATTTG+TGG | 0.369145 | 5.4:+13461660 | None:intergenic |
| AAATAGTCTTATCAGTTAAT+CGG | 0.370160 | 5.4:+13461448 | None:intergenic |
| CGTTTCCGCAGTCTCGATTT+CGG | 0.389930 | 5.4:-13463259 | MS.gene59457:CDS |
| GCTATGATTGGGCAAGTTGC+AGG | 0.391634 | 5.4:-13461728 | MS.gene59457:CDS |
| AGCTGCTTCCGCTGCTGCTA+AGG | 0.391726 | 5.4:-13461471 | MS.gene59457:CDS |
| CTAAGAGAACTGGTCGTCTC+AGG | 0.393643 | 5.4:-13461499 | MS.gene59457:CDS |
| GCCTTTGCGATGGTGGGTGT+GGG | 0.420149 | 5.4:+13463288 | None:intergenic |
| TTACAAATAACCGCACCTTC+AGG | 0.420706 | 5.4:+13463019 | None:intergenic |
| CCTCCATGAGGATGTTCAAC+TGG | 0.422258 | 5.4:+13461602 | None:intergenic |
| CAGGACAGTTTATTTATTGT+GGG | 0.425190 | 5.4:-13463090 | MS.gene59457:CDS |
| GACAGGATTAAGCTACCATC+AGG | 0.430549 | 5.4:-13461782 | MS.gene59457:intron |
| TTAGGGTGAAGAGGAATTGT+TGG | 0.435774 | 5.4:-13461652 | MS.gene59457:CDS |
| TCTGTTTCTTATATCTAAAA+GGG | 0.435806 | 5.4:+13463146 | None:intergenic |
| GTTAGGCGTGATGCTCCTCC+TGG | 0.436286 | 5.4:-13461545 | MS.gene59457:CDS |
| CTCATTGCTGCTAAGAGAAC+TGG | 0.437152 | 5.4:-13461509 | MS.gene59457:CDS |
| TCGAGACTGCGGAAACGTGC+TGG | 0.440209 | 5.4:+13463265 | None:intergenic |
| AACTGAGAAGCCAATGCTTA+AGG | 0.445753 | 5.4:-13461696 | MS.gene59457:CDS |
| GGAGGTAACCACCAGCATAT+TGG | 0.446084 | 5.4:-13461581 | MS.gene59457:CDS |
| ACAGGACAGTTTATTTATTG+TGG | 0.446996 | 5.4:-13463091 | MS.gene59457:CDS |
| CTCGATTTCGGTGAAAGAAA+CGG | 0.463830 | 5.4:-13463247 | MS.gene59457:CDS |
| GCATTACCAGCCTTAAGCAT+TGG | 0.465748 | 5.4:+13461686 | None:intergenic |
| AGTGAGTGCAGAGCTATGAT+TGG | 0.480414 | 5.4:-13461740 | MS.gene59457:CDS |
| TGCTGGGCCTTTGCGATGGT+GGG | 0.484311 | 5.4:+13463282 | None:intergenic |
| AGGTTTCCGGCGAGATGGGT+AGG | 0.490187 | 5.4:-13463354 | None:intergenic |
| CGAGACTGCGGAAACGTGCT+GGG | 0.490564 | 5.4:+13463266 | None:intergenic |
| TTGGACATGCTAGTACTGTT+AGG | 0.490772 | 5.4:-13461562 | MS.gene59457:CDS |
| GTGCTGGGCCTTTGCGATGG+TGG | 0.492579 | 5.4:+13463281 | None:intergenic |
| ATCATAGCTCTGCACTCACT+TGG | 0.492967 | 5.4:+13461743 | None:intergenic |
| ACAATCTTCTTTGCCCCTGA+TGG | 0.501695 | 5.4:+13461767 | None:intergenic |
| AATTGTTGGCCTAAGGTTCG+TGG | 0.507434 | 5.4:-13461638 | MS.gene59457:CDS |
| GCTCCTCCTGGACAGAAGGT+TGG | 0.508354 | 5.4:-13461533 | MS.gene59457:CDS |
| GAAGAGGAATTGTTGGCCTA+AGG | 0.511303 | 5.4:-13461645 | MS.gene59457:CDS |
| ATGAGACCAACCTTCTGTCC+AGG | 0.521573 | 5.4:+13461527 | None:intergenic |
| ATCATTCACGACCCAGGCCG+CGG | 0.538143 | 5.4:-13463199 | MS.gene59457:CDS |
| ATTGGGCAAGTTGCAGGTGG+AGG | 0.539757 | 5.4:-13461722 | MS.gene59457:CDS |
| GTGAGTGCAGAGCTATGATT+GGG | 0.540155 | 5.4:-13461739 | MS.gene59457:CDS |
| GGTTTCCGGCGAGATGGGTA+GGG | 0.540978 | 5.4:-13463353 | None:intergenic |
| TACTAGCATGTCCAATATGC+TGG | 0.543123 | 5.4:+13461570 | None:intergenic |
| GTGGGTGTGGGACTTGAAAA+CGG | 0.548294 | 5.4:+13463300 | None:intergenic |
| GAGAAGCCAATGCTTAAGGC+TGG | 0.549710 | 5.4:-13461692 | MS.gene59457:CDS |
| TGATGCTCCTCCTGGACAGA+AGG | 0.551156 | 5.4:-13461537 | MS.gene59457:CDS |
| ACCACAAATTTAGGGTGAAG+AGG | 0.551702 | 5.4:-13461661 | MS.gene59457:CDS |
| TCTTATATCTAAAAGGGTGT+CGG | 0.552820 | 5.4:+13463152 | None:intergenic |
| AGGGCACAACGTAAAGGAGC+AGG | 0.552983 | 5.4:-13463325 | MS.gene59457:CDS |
| CGAGATGGGTAGGGTTATCA+GGG | 0.554090 | 5.4:-13463344 | None:intergenic |
| CCGCGGTGCACCACTAGCTA+AGG | 0.554555 | 5.4:-13463182 | MS.gene59457:CDS |
| GAAAGAAACGGTTACCTGAA+AGG | 0.558738 | 5.4:-13463235 | MS.gene59457:CDS |
| GTTATCAGGGCACAACGTAA+AGG | 0.562139 | 5.4:-13463331 | MS.gene59457:CDS |
| TAAGAGAACTGGTCGTCTCA+GGG | 0.573235 | 5.4:-13461498 | MS.gene59457:CDS |
| AATCCAGTTGAACATCCTCA+TGG | 0.581222 | 5.4:-13461605 | MS.gene59457:CDS |
| AACGTGCTGGGCCTTTGCGA+TGG | 0.587555 | 5.4:+13463278 | None:intergenic |
| TGTAATGTTGAACATCATGT+TGG | 0.589500 | 5.4:-13463001 | MS.gene59457:CDS |
| ATAGCCACACCACGAACCTT+AGG | 0.594313 | 5.4:+13461629 | None:intergenic |
| CCTTTAAGGATGATTCCTGA+AGG | 0.597361 | 5.4:-13463034 | MS.gene59457:CDS |
| TCCCACACCCACCATCGCAA+AGG | 0.598343 | 5.4:-13463289 | MS.gene59457:CDS |
| TTGGCCTAAGGTTCGTGGTG+TGG | 0.606540 | 5.4:-13461633 | MS.gene59457:CDS |
| ACAGGATTAAGCTACCATCA+GGG | 0.606815 | 5.4:-13461781 | MS.gene59457:intron |
| GTTGAACATCCTCATGGAGG+AGG | 0.607255 | 5.4:-13461599 | MS.gene59457:CDS |
| AACGAAATCATTCACGACCC+AGG | 0.607857 | 5.4:-13463205 | MS.gene59457:CDS |
| GCTGCTGAGGGACTTTACAC+AGG | 0.622566 | 5.4:-13463109 | MS.gene59457:CDS |
| ATCCTGATAATGATACCTCT+AGG | 0.627712 | 5.4:-13462922 | MS.gene59457:intron |
| ATGATTGGGCAAGTTGCAGG+TGG | 0.627869 | 5.4:-13461725 | MS.gene59457:CDS |
| GAACATCATGTTGGTGATCG+TGG | 0.629971 | 5.4:-13462992 | MS.gene59457:CDS |
| CAGGATTAAGCTACCATCAG+GGG | 0.634909 | 5.4:-13461780 | MS.gene59457:CDS |
| AAGGATGATTCCTGAAGGTG+CGG | 0.638023 | 5.4:-13463029 | MS.gene59457:CDS |
| TTAATCGGCCTTAGCAGCAG+CGG | 0.643504 | 5.4:+13461463 | None:intergenic |
| TTTCACCGAAATCGAGACTG+CGG | 0.661724 | 5.4:+13463254 | None:intergenic |
| TAGCATGTCCAATATGCTGG+TGG | 0.670638 | 5.4:+13461573 | None:intergenic |
| CGGAATGTGACCTTAGCTAG+TGG | 0.672073 | 5.4:+13463172 | None:intergenic |
| AAGAGAACTGGTCGTCTCAG+GGG | 0.684178 | 5.4:-13461497 | MS.gene59457:CDS |
| TGGTGGTTACCTCCTCCATG+AGG | 0.690890 | 5.4:+13461590 | None:intergenic |
| AGACCAACCTTCTGTCCAGG+AGG | 0.695738 | 5.4:+13461530 | None:intergenic |
| CCAGTTGAACATCCTCATGG+AGG | 0.726090 | 5.4:-13461602 | MS.gene59457:CDS |
| CCTTAGCTAGTGGTGCACCG+CGG | 0.784984 | 5.4:+13463182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACAAATATGATTTG+TGG | - | chr5.4:13462030-13462049 | MS.gene59457:intron | 15.0% |
| !! | TATAAAAATTTCAATTACGT+GGG | - | chr5.4:13462847-13462866 | MS.gene59457:intron | 15.0% |
| !! | TTTGCTAATGTTAATTAAAA+AGG | + | chr5.4:13462182-13462201 | None:intergenic | 15.0% |
| !! | CTTAAAAATTTGAATGATGT+GGG | - | chr5.4:13462501-13462520 | MS.gene59457:intron | 20.0% |
| !! | GTATAAAAATTTCAATTACG+TGG | - | chr5.4:13462846-13462865 | MS.gene59457:intron | 20.0% |
| !! | TTAATTAACATTAGCAAAGA+TGG | - | chr5.4:13462184-13462203 | MS.gene59457:intron | 20.0% |
| !!! | ATTTAACTTTTACTGATGAT+GGG | - | chr5.4:13462983-13463002 | MS.gene59457:CDS | 20.0% |
| !!! | TATTTAACTTTTACTGATGA+TGG | - | chr5.4:13462982-13463001 | MS.gene59457:CDS | 20.0% |
| !!! | TCTGTTTCTTATATCTAAAA+GGG | + | chr5.4:13461660-13461679 | None:intergenic | 20.0% |
| !!! | TTCTGTTTCTTATATCTAAA+AGG | + | chr5.4:13461661-13461680 | None:intergenic | 20.0% |
| ! | ACAACACAGTAATTTCTAAA+TGG | + | chr5.4:13462110-13462129 | None:intergenic | 25.0% |
| ! | GCTTAAAAATTTGAATGATG+TGG | - | chr5.4:13462500-13462519 | MS.gene59457:intron | 25.0% |
| ! | TAATGCTTACCACAAATTTA+GGG | - | chr5.4:13463134-13463153 | MS.gene59457:CDS | 25.0% |
| ! | TATAAACGCAGTTACATTTA+TGG | + | chr5.4:13462695-13462714 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACTAGTAAGA+AGG | - | chr5.4:13462362-13462381 | MS.gene59457:intron | 25.0% |
| ! | TATGTTAATATACTTCGTAG+TGG | - | chr5.4:13462072-13462091 | MS.gene59457:intron | 25.0% |
| !! | CTTTTTGATAGAACACTATA+AGG | - | chr5.4:13462417-13462436 | MS.gene59457:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr5.4:13462354-13462373 | None:intergenic | 25.0% |
| !! | TGTAAAACTTTTTGTACTTC+TGG | - | chr5.4:13462747-13462766 | MS.gene59457:intron | 25.0% |
| AAAATGTGGATTCTGTAGTA+AGG | - | chr5.4:13462280-13462299 | MS.gene59457:intron | 30.0% | |
| AAAATTTCAATTACGTGGGA+TGG | - | chr5.4:13462851-13462870 | MS.gene59457:intron | 30.0% | |
| ACAGGACAGTTTATTTATTG+TGG | - | chr5.4:13461712-13461731 | MS.gene59457:CDS | 30.0% | |
| CAGGACAGTTTATTTATTGT+GGG | - | chr5.4:13461713-13461732 | MS.gene59457:CDS | 30.0% | |
| GTAATGCTTACCACAAATTT+AGG | - | chr5.4:13463133-13463152 | MS.gene59457:CDS | 30.0% | |
| GTTAATCAATCATAACTGTC+CGG | - | chr5.4:13462652-13462671 | MS.gene59457:intron | 30.0% | |
| TGTAATGTTGAACATCATGT+TGG | - | chr5.4:13461802-13461821 | MS.gene59457:intron | 30.0% | |
| ! | AAAAAAGCTACTCTTGTTGT+TGG | - | chr5.4:13461736-13461755 | MS.gene59457:CDS | 30.0% |
| ! | TCTTATATCTAAAAGGGTGT+CGG | + | chr5.4:13461654-13461673 | None:intergenic | 30.0% |
| ! | TTGGAAATGTTTTGCCTTTA+AGG | - | chr5.4:13461755-13461774 | MS.gene59457:CDS | 30.0% |
| AGTAAGGAGAGTAGATTAGA+TGG | - | chr5.4:13462296-13462315 | MS.gene59457:intron | 35.0% | |
| CAAAGATGGAGATGTAACAT+GGG | - | chr5.4:13462198-13462217 | MS.gene59457:intron | 35.0% | |
| CACATACACGAAAGTTTATG+CGG | - | chr5.4:13462630-13462649 | MS.gene59457:intron | 35.0% | |
| GGATAGTAAGAACTAGACTT+TGG | - | chr5.4:13462241-13462260 | MS.gene59457:intron | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | - | chr5.4:13462383-13462402 | MS.gene59457:intron | 35.0% | |
| GTGCATGGAAATTATACTCT+TGG | - | chr5.4:13462769-13462788 | MS.gene59457:intron | 35.0% | |
| TAGTAAGAACTAGACTTTGG+TGG | - | chr5.4:13462244-13462263 | MS.gene59457:intron | 35.0% | |
| ! | ATCCTGATAATGATACCTCT+AGG | - | chr5.4:13461881-13461900 | MS.gene59457:intron | 35.0% |
| !! | AACCTAGAGGTATCATTATC+AGG | + | chr5.4:13461886-13461905 | None:intergenic | 35.0% |
| !!! | GGTGTTCATGTTTTTTTGAC+AGG | - | chr5.4:13463004-13463023 | MS.gene59457:CDS | 35.0% |
| AACTGAGAAGCCAATGCTTA+AGG | - | chr5.4:13463107-13463126 | MS.gene59457:CDS | 40.0% | |
| AAGGAGAGTAGATTAGATGG+AGG | - | chr5.4:13462299-13462318 | MS.gene59457:intron | 40.0% | |
| AATCCAGTTGAACATCCTCA+TGG | - | chr5.4:13463198-13463217 | MS.gene59457:CDS | 40.0% | |
| ACAGGATTAAGCTACCATCA+GGG | - | chr5.4:13463022-13463041 | MS.gene59457:CDS | 40.0% | |
| AGGAGAGTAGATTAGATGGA+GGG | - | chr5.4:13462300-13462319 | MS.gene59457:intron | 40.0% | |
| CCTTCAGGAATCATCCTTAA+AGG | + | chr5.4:13461772-13461791 | None:intergenic | 40.0% | |
| CTCGATTTCGGTGAAAGAAA+CGG | - | chr5.4:13461556-13461575 | MS.gene59457:CDS | 40.0% | |
| GAAAGAAACGGTTACCTGAA+AGG | - | chr5.4:13461568-13461587 | MS.gene59457:CDS | 40.0% | |
| GAAGTCAAATCACTAGAGGT+AGG | - | chr5.4:13462322-13462341 | MS.gene59457:intron | 40.0% | |
| GCAAAGATGGAGATGTAACA+TGG | - | chr5.4:13462197-13462216 | MS.gene59457:intron | 40.0% | |
| TACTAGCATGTCCAATATGC+TGG | + | chr5.4:13463236-13463255 | None:intergenic | 40.0% | |
| TCCTCTTCACCCTAAATTTG+TGG | + | chr5.4:13463146-13463165 | None:intergenic | 40.0% | |
| TTACAAATAACCGCACCTTC+AGG | + | chr5.4:13461787-13461806 | None:intergenic | 40.0% | |
| TTAGGGTGAAGAGGAATTGT+TGG | - | chr5.4:13463151-13463170 | MS.gene59457:CDS | 40.0% | |
| TTGGACATGCTAGTACTGTT+AGG | - | chr5.4:13463241-13463260 | MS.gene59457:CDS | 40.0% | |
| TTTCGTTCACTACTCCTTTC+AGG | + | chr5.4:13461585-13461604 | None:intergenic | 40.0% | |
| ! | ACCACAAATTTAGGGTGAAG+AGG | - | chr5.4:13463142-13463161 | MS.gene59457:CDS | 40.0% |
| ! | AGAACTAGACTTTGGTGGTT+TGG | - | chr5.4:13462249-13462268 | MS.gene59457:intron | 40.0% |
| ! | CCTTTAAGGATGATTCCTGA+AGG | - | chr5.4:13461769-13461788 | MS.gene59457:CDS | 40.0% |
| ! | CTTTTTGTACTTCTGGTGCA+TGG | - | chr5.4:13462754-13462773 | MS.gene59457:intron | 40.0% |
| ! | GAACTAGACTTTGGTGGTTT+GGG | - | chr5.4:13462250-13462269 | MS.gene59457:intron | 40.0% |
| AACGAAATCATTCACGACCC+AGG | - | chr5.4:13461598-13461617 | MS.gene59457:CDS | 45.0% | |
| AAGGATGATTCCTGAAGGTG+CGG | - | chr5.4:13461774-13461793 | MS.gene59457:CDS | 45.0% | |
| ACAATCTTCTTTGCCCCTGA+TGG | + | chr5.4:13463039-13463058 | None:intergenic | 45.0% | |
| AGTGAGTGCAGAGCTATGAT+TGG | - | chr5.4:13463063-13463082 | MS.gene59457:CDS | 45.0% | |
| CAGGATTAAGCTACCATCAG+GGG | - | chr5.4:13463023-13463042 | MS.gene59457:CDS | 45.0% | |
| CTCATTGCTGCTAAGAGAAC+TGG | - | chr5.4:13463294-13463313 | MS.gene59457:CDS | 45.0% | |
| CTTATCCCACTATGTGGGAT+CGG | + | chr5.4:13462460-13462479 | None:intergenic | 45.0% | |
| GACAGGATTAAGCTACCATC+AGG | - | chr5.4:13463021-13463040 | MS.gene59457:CDS | 45.0% | |
| GAGAGAGAGAACAAACCTAG+AGG | + | chr5.4:13461899-13461918 | None:intergenic | 45.0% | |
| GAGATGTAACATGGGATGTG+TGG | - | chr5.4:13462206-13462225 | MS.gene59457:intron | 45.0% | |
| GAGGGAAGTCAAATCACTAG+AGG | - | chr5.4:13462318-13462337 | MS.gene59457:intron | 45.0% | |
| GATGTGTGGAAAGACTAGAC+GGG | - | chr5.4:13462220-13462239 | MS.gene59457:intron | 45.0% | |
| GCATTACCAGCCTTAAGCAT+TGG | + | chr5.4:13463120-13463139 | None:intergenic | 45.0% | |
| GGATGTGTGGAAAGACTAGA+CGG | - | chr5.4:13462219-13462238 | MS.gene59457:intron | 45.0% | |
| GGTCAAGCAACTTGTATGAC+CGG | + | chr5.4:13462674-13462693 | None:intergenic | 45.0% | |
| GTGAGTGCAGAGCTATGATT+GGG | - | chr5.4:13463064-13463083 | MS.gene59457:CDS | 45.0% | |
| GTTATCAGGGCACAACGTAA+AGG | - | chr5.4:13461472-13461491 | MS.gene59457:CDS | 45.0% | |
| GTTTGGGCATGTGGAAAATG+TGG | - | chr5.4:13462266-13462285 | MS.gene59457:intron | 45.0% | |
| TAAGAGAACTGGTCGTCTCA+GGG | - | chr5.4:13463305-13463324 | MS.gene59457:CDS | 45.0% | |
| TAGCATGTCCAATATGCTGG+TGG | + | chr5.4:13463233-13463252 | None:intergenic | 45.0% | |
| TCAATTACGTGGGATGGTGA+TGG | - | chr5.4:13462857-13462876 | MS.gene59457:intron | 45.0% | |
| TTTCACCGAAATCGAGACTG+CGG | + | chr5.4:13461552-13461571 | None:intergenic | 45.0% | |
| ! | AATTGTTGGCCTAAGGTTCG+TGG | - | chr5.4:13463165-13463184 | MS.gene59457:CDS | 45.0% |
| ! | ATCATAGCTCTGCACTCACT+TGG | + | chr5.4:13463063-13463082 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTATGT+GGG | + | chr5.4:13462465-13462484 | None:intergenic | 45.0% |
| ! | GAAGAGGAATTGTTGGCCTA+AGG | - | chr5.4:13463158-13463177 | MS.gene59457:CDS | 45.0% |
| ! | GGTTCTTTTGCTAGGTGTTC+TGG | - | chr5.4:13461832-13461851 | MS.gene59457:intron | 45.0% |
| ! | GTGATCGTGGTTCTTTTGCT+AGG | - | chr5.4:13461824-13461843 | MS.gene59457:intron | 45.0% |
| !! | GAACATCATGTTGGTGATCG+TGG | - | chr5.4:13461811-13461830 | MS.gene59457:intron | 45.0% |
| AAGAGAACTGGTCGTCTCAG+GGG | - | chr5.4:13463306-13463325 | MS.gene59457:CDS | 50.0% | |
| ATAGCCACACCACGAACCTT+AGG | + | chr5.4:13463177-13463196 | None:intergenic | 50.0% | |
| ATGAGACCAACCTTCTGTCC+AGG | + | chr5.4:13463279-13463298 | None:intergenic | 50.0% | |
| ATGATTGGGCAAGTTGCAGG+TGG | - | chr5.4:13463078-13463097 | MS.gene59457:CDS | 50.0% | |
| ATGTAGCCGATCCCACATAG+TGG | - | chr5.4:13462451-13462470 | MS.gene59457:intron | 50.0% | |
| CCAGTTGAACATCCTCATGG+AGG | - | chr5.4:13463201-13463220 | MS.gene59457:CDS | 50.0% | |
| CCTCCATGAGGATGTTCAAC+TGG | + | chr5.4:13463204-13463223 | None:intergenic | 50.0% | |
| CGGAATGTGACCTTAGCTAG+TGG | + | chr5.4:13461634-13461653 | None:intergenic | 50.0% | |
| CGTTTCCGCAGTCTCGATTT+CGG | - | chr5.4:13461544-13461563 | MS.gene59457:CDS | 50.0% | |
| CTAAGAGAACTGGTCGTCTC+AGG | - | chr5.4:13463304-13463323 | MS.gene59457:CDS | 50.0% | |
| GAGAAGCCAATGCTTAAGGC+TGG | - | chr5.4:13463111-13463130 | MS.gene59457:CDS | 50.0% | |
| GCTATGATTGGGCAAGTTGC+AGG | - | chr5.4:13463075-13463094 | MS.gene59457:CDS | 50.0% | |
| GGAGGTAACCACCAGCATAT+TGG | - | chr5.4:13463222-13463241 | MS.gene59457:CDS | 50.0% | |
| GTGGGTGTGGGACTTGAAAA+CGG | + | chr5.4:13461506-13461525 | None:intergenic | 50.0% | |
| GTTGAACATCCTCATGGAGG+AGG | - | chr5.4:13463204-13463223 | MS.gene59457:CDS | 50.0% | |
| TGTAGCCGATCCCACATAGT+GGG | - | chr5.4:13462452-13462471 | MS.gene59457:intron | 50.0% | |
| TTAATCGGCCTTAGCAGCAG+CGG | + | chr5.4:13463343-13463362 | None:intergenic | 50.0% | |
| ! | ACTTTGGTGGTTTGGGCATG+TGG | - | chr5.4:13462257-13462276 | MS.gene59457:intron | 50.0% |
| ! | AGAGCTTTTCGTTGCTGCTG+AGG | - | chr5.4:13461681-13461700 | MS.gene59457:CDS | 50.0% |
| ! | CCAAGCCTTATCCCACTATG+TGG | + | chr5.4:13462466-13462485 | None:intergenic | 50.0% |
| ! | CCACATAGTGGGATAAGGCT+TGG | - | chr5.4:13462463-13462482 | MS.gene59457:intron | 50.0% |
| ! | CGATCCCACATAGTGGGATA+AGG | - | chr5.4:13462458-13462477 | MS.gene59457:intron | 50.0% |
| ! | GAGCTTTTCGTTGCTGCTGA+GGG | - | chr5.4:13461682-13461701 | MS.gene59457:CDS | 50.0% |
| AGACCAACCTTCTGTCCAGG+AGG | + | chr5.4:13463276-13463295 | None:intergenic | 55.0% | |
| AGGGCACAACGTAAAGGAGC+AGG | - | chr5.4:13461478-13461497 | MS.gene59457:CDS | 55.0% | |
| ATTGGGCAAGTTGCAGGTGG+AGG | - | chr5.4:13463081-13463100 | MS.gene59457:CDS | 55.0% | |
| GCTGCTGAGGGACTTTACAC+AGG | - | chr5.4:13461694-13461713 | MS.gene59457:CDS | 55.0% | |
| TGATGCTCCTCCTGGACAGA+AGG | - | chr5.4:13463266-13463285 | MS.gene59457:CDS | 55.0% | |
| TGGTGGTTACCTCCTCCATG+AGG | + | chr5.4:13463216-13463235 | None:intergenic | 55.0% | |
| TTGGCCTAAGGTTCGTGGTG+TGG | - | chr5.4:13463170-13463189 | MS.gene59457:CDS | 55.0% | |
| AACGTGCTGGGCCTTTGCGA+TGG | + | chr5.4:13461528-13461547 | None:intergenic | 60.0% | |
| AGCTGCTTCCGCTGCTGCTA+AGG | - | chr5.4:13463332-13463351 | MS.gene59457:CDS | 60.0% | |
| ATCATTCACGACCCAGGCCG+CGG | - | chr5.4:13461604-13461623 | MS.gene59457:CDS | 60.0% | |
| CCTTAGCTAGTGGTGCACCG+CGG | + | chr5.4:13461624-13461643 | None:intergenic | 60.0% | |
| CGAGACTGCGGAAACGTGCT+GGG | + | chr5.4:13461540-13461559 | None:intergenic | 60.0% | |
| GCTCCTCCTGGACAGAAGGT+TGG | - | chr5.4:13463270-13463289 | MS.gene59457:CDS | 60.0% | |
| GTTAGGCGTGATGCTCCTCC+TGG | - | chr5.4:13463258-13463277 | MS.gene59457:CDS | 60.0% | |
| TCCCACACCCACCATCGCAA+AGG | - | chr5.4:13461514-13461533 | MS.gene59457:CDS | 60.0% | |
| TCGAGACTGCGGAAACGTGC+TGG | + | chr5.4:13461541-13461560 | None:intergenic | 60.0% | |
| TGCTGGGCCTTTGCGATGGT+GGG | + | chr5.4:13461524-13461543 | None:intergenic | 60.0% | |
| !! | GCCTTTGCGATGGTGGGTGT+GGG | + | chr5.4:13461518-13461537 | None:intergenic | 60.0% |
| CCGCGGTGCACCACTAGCTA+AGG | - | chr5.4:13461621-13461640 | MS.gene59457:CDS | 65.0% | |
| GTGCTGGGCCTTTGCGATGG+TGG | + | chr5.4:13461525-13461544 | None:intergenic | 65.0% | |
| !! | GGCCTTTGCGATGGTGGGTG+TGG | + | chr5.4:13461519-13461538 | None:intergenic | 65.0% |
| CTAGTGGTGCACCGCGGCCT+GGG | + | chr5.4:13461618-13461637 | None:intergenic | 70.0% | |
| GCTAGTGGTGCACCGCGGCC+TGG | + | chr5.4:13461619-13461638 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13461463 | 13463362 | 13461463 | ID=MS.gene59457 |
| chr5.4 | mRNA | 13461463 | 13463362 | 13461463 | ID=MS.gene59457.t1;Parent=MS.gene59457 |
| chr5.4 | exon | 13462923 | 13463362 | 13462923 | ID=MS.gene59457.t1.exon1;Parent=MS.gene59457.t1 |
| chr5.4 | CDS | 13462923 | 13463362 | 13462923 | ID=cds.MS.gene59457.t1;Parent=MS.gene59457.t1 |
| chr5.4 | exon | 13461463 | 13461799 | 13461463 | ID=MS.gene59457.t1.exon2;Parent=MS.gene59457.t1 |
| chr5.4 | CDS | 13461463 | 13461799 | 13461463 | ID=cds.MS.gene59457.t1;Parent=MS.gene59457.t1 |
| Gene Sequence |
| Protein sequence |
