Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68049.t1 | XP_003612146.1 | 100 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 2.10E-147 | 531.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68049.t1 | Q42064 | 92.6 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 5.6e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68049.t1 | G7JW56 | 100.0 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 1.5e-147 | 531.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene68049 | 0.859801 | 3.22E-63 | -1.69E-46 |
| MS.gene052345 | MS.gene68049 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene68049 | 0.861489 | 9.90E-64 | -1.69E-46 |
| MS.gene057272 | MS.gene68049 | 0.824915 | 6.23E-54 | -1.69E-46 |
| MS.gene058994 | MS.gene68049 | 0.833538 | 5.04E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27714 | MS.gene68049 | PPI |
| MS.gene64754 | MS.gene68049 | PPI |
| MS.gene68049 | MS.gene64754 | PPI |
| MS.gene68049 | MS.gene52229 | PPI |
| MS.gene68049 | MS.gene010610 | PPI |
| MS.gene023860 | MS.gene68049 | PPI |
| MS.gene59457 | MS.gene68049 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68049.t1 | MTR_5g021800 | 100.000 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 0.0 | 527 |
| MS.gene68049.t1 | MTR_7g076940 | 95.736 | 258 | 11 | 0 | 1 | 258 | 1 | 258 | 0.0 | 508 |
| MS.gene68049.t1 | MTR_2g015360 | 39.316 | 117 | 65 | 3 | 98 | 214 | 51 | 161 | 4.00e-18 | 80.1 |
| MS.gene68049.t1 | MTR_3g035710 | 39.815 | 108 | 58 | 3 | 107 | 214 | 1 | 101 | 6.00e-16 | 73.2 |
| MS.gene68049.t1 | MTR_0002s0800 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.54e-13 | 67.4 |
| MS.gene68049.t1 | MTR_0002s0360 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.54e-13 | 67.4 |
| MS.gene68049.t1 | MTR_3g037420 | 37.113 | 97 | 54 | 3 | 119 | 215 | 8 | 97 | 9.75e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68049.t1 | AT4G36130 | 92.636 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 1.20e-180 | 496 |
| MS.gene68049.t1 | AT2G18020 | 91.860 | 258 | 21 | 0 | 1 | 258 | 1 | 258 | 7.25e-175 | 482 |
| MS.gene68049.t1 | AT3G51190 | 84.519 | 239 | 36 | 1 | 1 | 238 | 1 | 239 | 5.61e-152 | 424 |
| MS.gene68049.t1 | ATCG00830 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 2.22e-24 | 99.0 |
| MS.gene68049.t1 | ATCG01310 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 2.22e-24 | 99.0 |
| MS.gene68049.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
| MS.gene68049.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
| MS.gene68049.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
Find 81 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGCTTACCACAAATTT+AGG | 0.139039 | 5.3:-12603899 | MS.gene68049:CDS |
| TTCTGTTTCTTATATCTAAA+AGG | 0.141313 | 5.3:+12605392 | None:intergenic |
| GCGAGATGGGTAGGGTTATC+AGG | 0.218220 | 5.3:-12605592 | None:intergenic |
| GCTAGTGGTGCACCGCGACC+TGG | 0.291779 | 5.3:+12605434 | None:intergenic |
| TAATGCTTACCACAAATTTA+GGG | 0.348170 | 5.3:-12603898 | MS.gene68049:CDS |
| AACCTAGAGGTATCATTATC+AGG | 0.354338 | 5.3:+12605167 | None:intergenic |
| GGCCTTTGCGATGGTGGGTG+TGG | 0.359733 | 5.3:+12605534 | None:intergenic |
| AGCTGCTTCTGCTGCTGCTA+AGG | 0.362731 | 5.3:-12603700 | MS.gene68049:CDS |
| TCCTCTTCACCCTAAATTTG+TGG | 0.369145 | 5.3:+12603889 | None:intergenic |
| CGTTTCCGCAGTCTCGATTT+CGG | 0.389930 | 5.3:-12605506 | MS.gene68049:CDS |
| GCTATGATTGGGCAAGTTGC+AGG | 0.391634 | 5.3:-12603957 | MS.gene68049:CDS |
| CTAAGAGAACTGGTCGTCTC+AGG | 0.393643 | 5.3:-12603728 | MS.gene68049:CDS |
| TTAGGGTGAAGAGGAATTGC+TGG | 0.413541 | 5.3:-12603881 | MS.gene68049:CDS |
| TTTCGTTCACTACTCCTTTG+AGG | 0.415458 | 5.3:+12605468 | None:intergenic |
| CTGGACAGTTTATTTATTGT+GGG | 0.419100 | 5.3:-12605337 | MS.gene68049:CDS |
| GCCTTTGCGATGGTGGGTGT+GGG | 0.420149 | 5.3:+12605535 | None:intergenic |
| TTACAAATAACCGCACCTTC+AGG | 0.420706 | 5.3:+12605266 | None:intergenic |
| CCTCCATGAGGATGTTCAAC+TGG | 0.422258 | 5.3:+12603831 | None:intergenic |
| GACAGGATTAAGCTACCATC+AGG | 0.430549 | 5.3:-12604011 | MS.gene68049:intron |
| TCTGTTTCTTATATCTAAAA+GGG | 0.435806 | 5.3:+12605393 | None:intergenic |
| GTTAGGCGTGATGCTCCTCC+TGG | 0.436286 | 5.3:-12603774 | MS.gene68049:CDS |
| CTCATTGCTGCTAAGAGAAC+TGG | 0.437152 | 5.3:-12603738 | MS.gene68049:CDS |
| TCGAGACTGCGGAAACGTGC+TGG | 0.440209 | 5.3:+12605512 | None:intergenic |
| ACTGGACAGTTTATTTATTG+TGG | 0.444957 | 5.3:-12605338 | MS.gene68049:CDS |
| AACTGAGAAGCCAATGCTTA+AGG | 0.445753 | 5.3:-12603925 | MS.gene68049:CDS |
| GGAGGTAACCACCAGCATAT+TGG | 0.446084 | 5.3:-12603810 | MS.gene68049:CDS |
| CTCGATTTCGGTGAAAGAAA+CGG | 0.463830 | 5.3:-12605494 | MS.gene68049:CDS |
| GCATTACCAGCCTTAAGCAT+TGG | 0.465748 | 5.3:+12603915 | None:intergenic |
| AGTGAGTGCAGAGCTATGAT+TGG | 0.480414 | 5.3:-12603969 | MS.gene68049:CDS |
| TGCTGGGCCTTTGCGATGGT+GGG | 0.484311 | 5.3:+12605529 | None:intergenic |
| TAGTTTCCGGCGAGATGGGT+AGG | 0.490187 | 5.3:-12605601 | None:intergenic |
| CGAGACTGCGGAAACGTGCT+GGG | 0.490564 | 5.3:+12605513 | None:intergenic |
| TTGGACATGCTAGTACTGTT+AGG | 0.490772 | 5.3:-12603791 | MS.gene68049:CDS |
| CTAGTGGTGCACCGCGACCT+GGG | 0.492115 | 5.3:+12605435 | None:intergenic |
| GTGCTGGGCCTTTGCGATGG+TGG | 0.492579 | 5.3:+12605528 | None:intergenic |
| ATCATAGCTCTGCACTCACT+TGG | 0.492967 | 5.3:+12603972 | None:intergenic |
| ACAATCTTCTTTGCCCCTGA+TGG | 0.501695 | 5.3:+12603996 | None:intergenic |
| GCTCCTCCTGGACAGAAGGT+TGG | 0.508354 | 5.3:-12603762 | MS.gene68049:CDS |
| ATCATTCACGACCCAGGTCG+CGG | 0.520973 | 5.3:-12605446 | MS.gene68049:CDS |
| ATGAGACCAACCTTCTGTCC+AGG | 0.521573 | 5.3:+12603756 | None:intergenic |
| GAAGAGGAATTGCTGGCCTA+AGG | 0.522177 | 5.3:-12603874 | MS.gene68049:CDS |
| AATTGCTGGCCTAAGGTTCG+TGG | 0.527466 | 5.3:-12603867 | MS.gene68049:CDS |
| ATTGGGCAAGTTGCAGGTGG+AGG | 0.539757 | 5.3:-12603951 | MS.gene68049:CDS |
| GTGAGTGCAGAGCTATGATT+GGG | 0.540155 | 5.3:-12603968 | MS.gene68049:CDS |
| TACTAGCATGTCCAATATGC+TGG | 0.543123 | 5.3:+12603799 | None:intergenic |
| GTGGGTGTGGGACTTGAAAA+CGG | 0.548294 | 5.3:+12605547 | None:intergenic |
| GAGAAGCCAATGCTTAAGGC+TGG | 0.549710 | 5.3:-12603921 | MS.gene68049:CDS |
| AGTTTCCGGCGAGATGGGTA+GGG | 0.550945 | 5.3:-12605600 | None:intergenic |
| TGATGCTCCTCCTGGACAGA+AGG | 0.551156 | 5.3:-12603766 | MS.gene68049:CDS |
| ACCACAAATTTAGGGTGAAG+AGG | 0.551702 | 5.3:-12603890 | MS.gene68049:CDS |
| TCTTATATCTAAAAGGGTGT+CGG | 0.552820 | 5.3:+12605399 | None:intergenic |
| AGGGCACAACGTAAAGGAGC+AGG | 0.552983 | 5.3:-12605572 | MS.gene68049:CDS |
| CGAGATGGGTAGGGTTATCA+GGG | 0.554090 | 5.3:-12605591 | None:intergenic |
| GAAAGAAACGGTTACCTCAA+AGG | 0.558738 | 5.3:-12605482 | MS.gene68049:CDS |
| GTTATCAGGGCACAACGTAA+AGG | 0.562139 | 5.3:-12605578 | MS.gene68049:CDS |
| CCTTCAGGAATCATCCTCAA+TGG | 0.568035 | 5.3:+12605281 | None:intergenic |
| AACGAAATCATTCACGACCC+AGG | 0.570840 | 5.3:-12605452 | MS.gene68049:CDS |
| TAAGAGAACTGGTCGTCTCA+GGG | 0.573235 | 5.3:-12603727 | MS.gene68049:CDS |
| TCGCGGTGCACCACTAGCTA+AGG | 0.577052 | 5.3:-12605429 | MS.gene68049:CDS |
| AATCCAGTTGAACATCCTCA+TGG | 0.581222 | 5.3:-12603834 | MS.gene68049:CDS |
| AACGTGCTGGGCCTTTGCGA+TGG | 0.587555 | 5.3:+12605525 | None:intergenic |
| GCTGCTGAGGGACTTTACAC+TGG | 0.588705 | 5.3:-12605356 | MS.gene68049:CDS |
| TGTAATGTTGAACATCATGT+TGG | 0.589500 | 5.3:-12605248 | MS.gene68049:CDS |
| CTGGCCTAAGGTTCGTGGTG+TGG | 0.593495 | 5.3:-12603862 | MS.gene68049:CDS |
| ATAGCCACACCACGAACCTT+AGG | 0.594313 | 5.3:+12603858 | None:intergenic |
| TCCCACACCCACCATCGCAA+AGG | 0.598343 | 5.3:-12605536 | MS.gene68049:CDS |
| CCATTGAGGATGATTCCTGA+AGG | 0.603950 | 5.3:-12605281 | MS.gene68049:CDS |
| ACAGGATTAAGCTACCATCA+GGG | 0.606815 | 5.3:-12604010 | MS.gene68049:intron |
| GTTGAACATCCTCATGGAGG+AGG | 0.607255 | 5.3:-12603828 | MS.gene68049:CDS |
| ATCCTGATAATGATACCTCT+AGG | 0.627712 | 5.3:-12605169 | MS.gene68049:intron |
| ATGATTGGGCAAGTTGCAGG+TGG | 0.627869 | 5.3:-12603954 | MS.gene68049:CDS |
| GAGGATGATTCCTGAAGGTG+CGG | 0.634290 | 5.3:-12605276 | MS.gene68049:CDS |
| CAGGATTAAGCTACCATCAG+GGG | 0.634909 | 5.3:-12604009 | MS.gene68049:CDS |
| GAACATCATGTTGGTGATCG+TGG | 0.646474 | 5.3:-12605239 | MS.gene68049:CDS |
| TTTCACCGAAATCGAGACTG+CGG | 0.661724 | 5.3:+12605501 | None:intergenic |
| TAGCATGTCCAATATGCTGG+TGG | 0.670638 | 5.3:+12603802 | None:intergenic |
| CGGAATGTGACCTTAGCTAG+TGG | 0.672073 | 5.3:+12605419 | None:intergenic |
| AAGAGAACTGGTCGTCTCAG+GGG | 0.684178 | 5.3:-12603726 | MS.gene68049:CDS |
| TGGTGGTTACCTCCTCCATG+AGG | 0.690890 | 5.3:+12603819 | None:intergenic |
| AGACCAACCTTCTGTCCAGG+AGG | 0.695738 | 5.3:+12603759 | None:intergenic |
| CCAGTTGAACATCCTCATGG+AGG | 0.726090 | 5.3:-12603831 | MS.gene68049:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATATGTTAATTAAAAA+TGG | + | chr5.3:12604170-12604189 | None:intergenic | 10.0% |
| !! | AAATATACAAATATGATTTG+TGG | - | chr5.3:12604223-12604242 | MS.gene68049:intron | 15.0% |
| !! | TAATACAACTAATTTCTAAA+TGG | + | chr5.3:12604303-12604322 | None:intergenic | 15.0% |
| !! | TATAAAAACTTGAATTATGT+GGG | - | chr5.3:12605096-12605115 | MS.gene68049:intron | 15.0% |
| !! | AGCTTAAAAAATTAATGATG+TGG | - | chr5.3:12604806-12604825 | MS.gene68049:intron | 20.0% |
| !! | GTATAAAAACTTGAATTATG+TGG | - | chr5.3:12605095-12605114 | MS.gene68049:intron | 20.0% |
| !! | TAACACTTATAGTAGAAAAA+TGG | - | chr5.3:12604414-12604433 | MS.gene68049:intron | 20.0% |
| !!! | ATTTAACTTTTACTGATGAT+GGG | - | chr5.3:12605230-12605249 | MS.gene68049:CDS | 20.0% |
| !!! | TATTTAACTTTTACTGATGA+TGG | - | chr5.3:12605229-12605248 | MS.gene68049:CDS | 20.0% |
| !!! | TCTGTTTCTTATATCTAAAA+GGG | + | chr5.3:12603889-12603908 | None:intergenic | 20.0% |
| !!! | TTCTGTTTCTTATATCTAAA+AGG | + | chr5.3:12603890-12603909 | None:intergenic | 20.0% |
| ! | AAAACAAACACATACTTAGT+GGG | - | chr5.3:12604756-12604775 | MS.gene68049:intron | 25.0% |
| ! | AAGAGAAACTAGTATTAAGA+AGG | - | chr5.3:12604563-12604582 | MS.gene68049:intron | 25.0% |
| ! | AATGGATAGAAACTAGAATT+AGG | - | chr5.3:12604432-12604451 | MS.gene68049:intron | 25.0% |
| ! | TAAAACAAACACATACTTAG+TGG | - | chr5.3:12604755-12604774 | MS.gene68049:intron | 25.0% |
| ! | TAATGCTTACCACAAATTTA+GGG | - | chr5.3:12605381-12605400 | MS.gene68049:CDS | 25.0% |
| ! | TAGAATTAGAAATGACAAGT+TGG | - | chr5.3:12604389-12604408 | MS.gene68049:intron | 25.0% |
| ! | TCATTTATATGTGTGACTAT+CGG | + | chr5.3:12604956-12604975 | None:intergenic | 25.0% |
| !!! | TAAGTATGTGTTTGTTTTAG+AGG | + | chr5.3:12604754-12604773 | None:intergenic | 25.0% |
| AAAACTTGAATTATGTGGGA+TGG | - | chr5.3:12605100-12605119 | MS.gene68049:intron | 30.0% | |
| AAACTAGAATTAGGTGGTTT+AGG | - | chr5.3:12604441-12604460 | MS.gene68049:intron | 30.0% | |
| ACTGGACAGTTTATTTATTG+TGG | - | chr5.3:12603941-12603960 | MS.gene68049:CDS | 30.0% | |
| ATGTTAGAAGCTACAATATG+TGG | + | chr5.3:12604708-12604727 | None:intergenic | 30.0% | |
| CTCGCAATCAATTATACTAA+GGG | + | chr5.3:12605034-12605053 | None:intergenic | 30.0% | |
| CTGGACAGTTTATTTATTGT+GGG | - | chr5.3:12603942-12603961 | MS.gene68049:CDS | 30.0% | |
| GTAATGCTTACCACAAATTT+AGG | - | chr5.3:12605380-12605399 | MS.gene68049:CDS | 30.0% | |
| TCTCGCAATCAATTATACTA+AGG | + | chr5.3:12605035-12605054 | None:intergenic | 30.0% | |
| TGTAATGTTGAACATCATGT+TGG | - | chr5.3:12604031-12604050 | MS.gene68049:intron | 30.0% | |
| TGTAGCTTCTAACATAATGT+TGG | - | chr5.3:12604713-12604732 | MS.gene68049:intron | 30.0% | |
| ! | AAAAAAGCTACTCTTGTTGT+TGG | - | chr5.3:12603965-12603984 | MS.gene68049:CDS | 30.0% |
| ! | TCTTATATCTAAAAGGGTGT+CGG | + | chr5.3:12603883-12603902 | None:intergenic | 30.0% |
| AACACATACTTAGTGGGATA+AGG | - | chr5.3:12604762-12604781 | MS.gene68049:intron | 35.0% | |
| CATATGCACGAAAGTTTATG+CGG | - | chr5.3:12604912-12604931 | MS.gene68049:intron | 35.0% | |
| GGATAGAAACTAGAATTAGG+TGG | - | chr5.3:12604435-12604454 | MS.gene68049:intron | 35.0% | |
| TAGTCTACTCTCCTTAATAC+AGG | + | chr5.3:12604491-12604510 | None:intergenic | 35.0% | |
| ! | ATCCTGATAATGATACCTCT+AGG | - | chr5.3:12604110-12604129 | MS.gene68049:intron | 35.0% |
| ! | TTGGAAATGTTTTGCCATTG+AGG | - | chr5.3:12603984-12604003 | MS.gene68049:CDS | 35.0% |
| !! | AACCTAGAGGTATCATTATC+AGG | + | chr5.3:12604115-12604134 | None:intergenic | 35.0% |
| !!! | GGTGTTGATGATTTTTTGAC+AGG | - | chr5.3:12605251-12605270 | MS.gene68049:CDS | 35.0% |
| AAATGGATACAGACATGAGG+TGG | + | chr5.3:12604666-12604685 | None:intergenic | 40.0% | |
| AACTGAGAAGCCAATGCTTA+AGG | - | chr5.3:12605354-12605373 | MS.gene68049:CDS | 40.0% | |
| AAGGAGAGTAGACTAGATGA+AGG | - | chr5.3:12604496-12604515 | MS.gene68049:intron | 40.0% | |
| AAGGGGAGTTAAATCACTTG+AGG | - | chr5.3:12604515-12604534 | MS.gene68049:intron | 40.0% | |
| AATCCAGTTGAACATCCTCA+TGG | - | chr5.3:12605445-12605464 | MS.gene68049:CDS | 40.0% | |
| ACAGGATTAAGCTACCATCA+GGG | - | chr5.3:12605269-12605288 | MS.gene68049:CDS | 40.0% | |
| ACATAATGTTGGTCCACGTT+TGG | - | chr5.3:12604724-12604743 | MS.gene68049:intron | 40.0% | |
| AGGAGAGTAGACTAGATGAA+GGG | - | chr5.3:12604497-12604516 | MS.gene68049:intron | 40.0% | |
| ATACTTAGTGGGATAAGGCT+TGG | - | chr5.3:12604767-12604786 | MS.gene68049:intron | 40.0% | |
| ATGAGAGAGAACAAACCTAG+AGG | + | chr5.3:12604128-12604147 | None:intergenic | 40.0% | |
| CATAATGTTGGTCCACGTTT+GGG | - | chr5.3:12604725-12604744 | MS.gene68049:intron | 40.0% | |
| CTCGATTTCGGTGAAAGAAA+CGG | - | chr5.3:12603785-12603804 | MS.gene68049:CDS | 40.0% | |
| CTTATTGCACTTCTGATGCA+TGG | - | chr5.3:12605000-12605019 | MS.gene68049:intron | 40.0% | |
| GAAAGAAACGGTTACCTCAA+AGG | - | chr5.3:12603797-12603816 | MS.gene68049:CDS | 40.0% | |
| GGAGTTAAATCACTTGAGGT+AGG | - | chr5.3:12604519-12604538 | MS.gene68049:intron | 40.0% | |
| GTGAAATGGATACAGACATG+AGG | + | chr5.3:12604669-12604688 | None:intergenic | 40.0% | |
| TACTAGCATGTCCAATATGC+TGG | + | chr5.3:12605483-12605502 | None:intergenic | 40.0% | |
| TCCTCTTCACCCTAAATTTG+TGG | + | chr5.3:12605393-12605412 | None:intergenic | 40.0% | |
| TGAATTATGTGGGATGGTGA+TGG | - | chr5.3:12605106-12605125 | MS.gene68049:intron | 40.0% | |
| TTACAAATAACCGCACCTTC+AGG | + | chr5.3:12604016-12604035 | None:intergenic | 40.0% | |
| TTGGACATGCTAGTACTGTT+AGG | - | chr5.3:12605488-12605507 | MS.gene68049:CDS | 40.0% | |
| TTTCGTTCACTACTCCTTTG+AGG | + | chr5.3:12603814-12603833 | None:intergenic | 40.0% | |
| ! | ACCACAAATTTAGGGTGAAG+AGG | - | chr5.3:12605389-12605408 | MS.gene68049:CDS | 40.0% |
| AACGAAATCATTCACGACCC+AGG | - | chr5.3:12603827-12603846 | MS.gene68049:CDS | 45.0% | |
| ACAATCTTCTTTGCCCCTGA+TGG | + | chr5.3:12605286-12605305 | None:intergenic | 45.0% | |
| AGTGAGTGCAGAGCTATGAT+TGG | - | chr5.3:12605310-12605329 | MS.gene68049:CDS | 45.0% | |
| CAGGATTAAGCTACCATCAG+GGG | - | chr5.3:12605270-12605289 | MS.gene68049:CDS | 45.0% | |
| CCATTGAGGATGATTCCTGA+AGG | - | chr5.3:12603998-12604017 | MS.gene68049:CDS | 45.0% | |
| CCTTCAGGAATCATCCTCAA+TGG | + | chr5.3:12604001-12604020 | None:intergenic | 45.0% | |
| CTCATTGCTGCTAAGAGAAC+TGG | - | chr5.3:12605541-12605560 | MS.gene68049:CDS | 45.0% | |
| GACAGGATTAAGCTACCATC+AGG | - | chr5.3:12605268-12605287 | MS.gene68049:CDS | 45.0% | |
| GACGCATGGAACCTGTATTA+AGG | - | chr5.3:12604477-12604496 | MS.gene68049:intron | 45.0% | |
| GCATTACCAGCCTTAAGCAT+TGG | + | chr5.3:12605367-12605386 | None:intergenic | 45.0% | |
| GGAGAGTAGACTAGATGAAG+GGG | - | chr5.3:12604498-12604517 | MS.gene68049:intron | 45.0% | |
| GTGAGTGCAGAGCTATGATT+GGG | - | chr5.3:12605311-12605330 | MS.gene68049:CDS | 45.0% | |
| GTTATCAGGGCACAACGTAA+AGG | - | chr5.3:12603701-12603720 | MS.gene68049:CDS | 45.0% | |
| TAAGAGAACTGGTCGTCTCA+GGG | - | chr5.3:12605552-12605571 | MS.gene68049:CDS | 45.0% | |
| TAGCATGTCCAATATGCTGG+TGG | + | chr5.3:12605480-12605499 | None:intergenic | 45.0% | |
| TATCCATTTCACCGCGGAAA+TGG | - | chr5.3:12604677-12604696 | MS.gene68049:intron | 45.0% | |
| TGTCTGTATCCATTTCACCG+CGG | - | chr5.3:12604671-12604690 | MS.gene68049:intron | 45.0% | |
| TTAGGGTGAAGAGGAATTGC+TGG | - | chr5.3:12605398-12605417 | MS.gene68049:CDS | 45.0% | |
| TTTCACCGAAATCGAGACTG+CGG | + | chr5.3:12603781-12603800 | None:intergenic | 45.0% | |
| ! | ATCATAGCTCTGCACTCACT+TGG | + | chr5.3:12605310-12605329 | None:intergenic | 45.0% |
| !! | GAACATCATGTTGGTGATCG+TGG | - | chr5.3:12604040-12604059 | MS.gene68049:intron | 45.0% |
| !! | TTTTAGAGGCTTCCCAAACG+TGG | + | chr5.3:12604740-12604759 | None:intergenic | 45.0% |
| AAGAGAACTGGTCGTCTCAG+GGG | - | chr5.3:12605553-12605572 | MS.gene68049:CDS | 50.0% | |
| ATAGCCACACCACGAACCTT+AGG | + | chr5.3:12605424-12605443 | None:intergenic | 50.0% | |
| ATGAGACCAACCTTCTGTCC+AGG | + | chr5.3:12605526-12605545 | None:intergenic | 50.0% | |
| ATGATTGGGCAAGTTGCAGG+TGG | - | chr5.3:12605325-12605344 | MS.gene68049:CDS | 50.0% | |
| ATGTGGCTTCTCCATTTCCG+CGG | + | chr5.3:12604691-12604710 | None:intergenic | 50.0% | |
| CCAGTTGAACATCCTCATGG+AGG | - | chr5.3:12605448-12605467 | MS.gene68049:CDS | 50.0% | |
| CCTCCATGAGGATGTTCAAC+TGG | + | chr5.3:12605451-12605470 | None:intergenic | 50.0% | |
| CGGAATGTGACCTTAGCTAG+TGG | + | chr5.3:12603863-12603882 | None:intergenic | 50.0% | |
| CGTTTCCGCAGTCTCGATTT+CGG | - | chr5.3:12603773-12603792 | MS.gene68049:CDS | 50.0% | |
| CTAAGAGAACTGGTCGTCTC+AGG | - | chr5.3:12605551-12605570 | MS.gene68049:CDS | 50.0% | |
| GAGAAGCCAATGCTTAAGGC+TGG | - | chr5.3:12605358-12605377 | MS.gene68049:CDS | 50.0% | |
| GAGGATGATTCCTGAAGGTG+CGG | - | chr5.3:12604003-12604022 | MS.gene68049:CDS | 50.0% | |
| GCATGTGTAGAGAAGACGCA+TGG | - | chr5.3:12604463-12604482 | MS.gene68049:intron | 50.0% | |
| GCTATGATTGGGCAAGTTGC+AGG | - | chr5.3:12605322-12605341 | MS.gene68049:CDS | 50.0% | |
| GGAGGTAACCACCAGCATAT+TGG | - | chr5.3:12605469-12605488 | MS.gene68049:CDS | 50.0% | |
| GTGGGTGTGGGACTTGAAAA+CGG | + | chr5.3:12603735-12603754 | None:intergenic | 50.0% | |
| GTTGAACATCCTCATGGAGG+AGG | - | chr5.3:12605451-12605470 | MS.gene68049:CDS | 50.0% | |
| TCTCCATTTCCGCGGTGAAA+TGG | + | chr5.3:12604683-12604702 | None:intergenic | 50.0% | |
| ! | AATTGCTGGCCTAAGGTTCG+TGG | - | chr5.3:12605412-12605431 | MS.gene68049:CDS | 50.0% |
| ! | AGAGCTTTTCGTTGCTGCTG+AGG | - | chr5.3:12603910-12603929 | MS.gene68049:CDS | 50.0% |
| ! | GAAGAGGAATTGCTGGCCTA+AGG | - | chr5.3:12605405-12605424 | MS.gene68049:CDS | 50.0% |
| ! | GAGCTTTTCGTTGCTGCTGA+GGG | - | chr5.3:12603911-12603930 | MS.gene68049:CDS | 50.0% |
| ! | GGTGCTTTTGCTAGGTGTTC+TGG | - | chr5.3:12604061-12604080 | MS.gene68049:intron | 50.0% |
| ! | GTGATCGTGGTGCTTTTGCT+AGG | - | chr5.3:12604053-12604072 | MS.gene68049:intron | 50.0% |
| AGACCAACCTTCTGTCCAGG+AGG | + | chr5.3:12605523-12605542 | None:intergenic | 55.0% | |
| AGCTGCTTCTGCTGCTGCTA+AGG | - | chr5.3:12605579-12605598 | MS.gene68049:CDS | 55.0% | |
| AGGGCACAACGTAAAGGAGC+AGG | - | chr5.3:12603707-12603726 | MS.gene68049:CDS | 55.0% | |
| ATCATTCACGACCCAGGTCG+CGG | - | chr5.3:12603833-12603852 | MS.gene68049:CDS | 55.0% | |
| ATTGGGCAAGTTGCAGGTGG+AGG | - | chr5.3:12605328-12605347 | MS.gene68049:CDS | 55.0% | |
| GCTGCTGAGGGACTTTACAC+TGG | - | chr5.3:12603923-12603942 | MS.gene68049:CDS | 55.0% | |
| TGATGCTCCTCCTGGACAGA+AGG | - | chr5.3:12605513-12605532 | MS.gene68049:CDS | 55.0% | |
| TGGTGGTTACCTCCTCCATG+AGG | + | chr5.3:12605463-12605482 | None:intergenic | 55.0% | |
| AACGTGCTGGGCCTTTGCGA+TGG | + | chr5.3:12603757-12603776 | None:intergenic | 60.0% | |
| CGAGACTGCGGAAACGTGCT+GGG | + | chr5.3:12603769-12603788 | None:intergenic | 60.0% | |
| CTGGCCTAAGGTTCGTGGTG+TGG | - | chr5.3:12605417-12605436 | MS.gene68049:CDS | 60.0% | |
| GCTCCTCCTGGACAGAAGGT+TGG | - | chr5.3:12605517-12605536 | MS.gene68049:CDS | 60.0% | |
| GTTAGGCGTGATGCTCCTCC+TGG | - | chr5.3:12605505-12605524 | MS.gene68049:CDS | 60.0% | |
| TCCCACACCCACCATCGCAA+AGG | - | chr5.3:12603743-12603762 | MS.gene68049:CDS | 60.0% | |
| TCGAGACTGCGGAAACGTGC+TGG | + | chr5.3:12603770-12603789 | None:intergenic | 60.0% | |
| TCGCGGTGCACCACTAGCTA+AGG | - | chr5.3:12603850-12603869 | MS.gene68049:CDS | 60.0% | |
| TGCTGGGCCTTTGCGATGGT+GGG | + | chr5.3:12603753-12603772 | None:intergenic | 60.0% | |
| !! | GCCTTTGCGATGGTGGGTGT+GGG | + | chr5.3:12603747-12603766 | None:intergenic | 60.0% |
| CTAGTGGTGCACCGCGACCT+GGG | + | chr5.3:12603847-12603866 | None:intergenic | 65.0% | |
| GTGCTGGGCCTTTGCGATGG+TGG | + | chr5.3:12603754-12603773 | None:intergenic | 65.0% | |
| !! | GGCCTTTGCGATGGTGGGTG+TGG | + | chr5.3:12603748-12603767 | None:intergenic | 65.0% |
| GCTAGTGGTGCACCGCGACC+TGG | + | chr5.3:12603848-12603867 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12603692 | 12605609 | 12603692 | ID=MS.gene68049 |
| chr5.3 | mRNA | 12603692 | 12605609 | 12603692 | ID=MS.gene68049.t1;Parent=MS.gene68049 |
| chr5.3 | exon | 12605170 | 12605609 | 12605170 | ID=MS.gene68049.t1.exon1;Parent=MS.gene68049.t1 |
| chr5.3 | CDS | 12605170 | 12605609 | 12605170 | ID=cds.MS.gene68049.t1;Parent=MS.gene68049.t1 |
| chr5.3 | exon | 12603692 | 12604028 | 12603692 | ID=MS.gene68049.t1.exon2;Parent=MS.gene68049.t1 |
| chr5.3 | CDS | 12603692 | 12604028 | 12603692 | ID=cds.MS.gene68049.t1;Parent=MS.gene68049.t1 |
| Gene Sequence |
| Protein sequence |
