Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023860.t1 | XP_003623912.1 | 100 | 259 | 0 | 0 | 1 | 259 | 1 | 259 | 6.10E-147 | 530 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023860.t1 | Q42064 | 93.0 | 258 | 18 | 0 | 1 | 258 | 1 | 258 | 3.3e-141 | 502.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023860.t1 | G7L3L0 | 100.0 | 259 | 0 | 0 | 1 | 259 | 1 | 259 | 4.4e-147 | 530.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023860 | MS.gene59457 | PPI |
| MS.gene023860 | MS.gene64754 | PPI |
| MS.gene023860 | MS.gene52229 | PPI |
| MS.gene023860 | MS.gene010610 | PPI |
| MS.gene023860 | MS.gene68049 | PPI |
| MS.gene27714 | MS.gene023860 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023860.t1 | MTR_7g076940 | 100.000 | 259 | 0 | 0 | 1 | 259 | 1 | 259 | 0.0 | 528 |
| MS.gene023860.t1 | MTR_5g021800 | 95.736 | 258 | 11 | 0 | 1 | 258 | 1 | 258 | 0.0 | 508 |
| MS.gene023860.t1 | MTR_2g015360 | 41.026 | 117 | 63 | 3 | 98 | 214 | 51 | 161 | 7.67e-19 | 82.0 |
| MS.gene023860.t1 | MTR_3g035710 | 40.741 | 108 | 57 | 3 | 107 | 214 | 1 | 101 | 3.18e-16 | 73.9 |
| MS.gene023860.t1 | MTR_0002s0800 | 39.048 | 105 | 49 | 3 | 115 | 215 | 3 | 96 | 7.39e-14 | 68.9 |
| MS.gene023860.t1 | MTR_0002s0360 | 39.048 | 105 | 49 | 3 | 115 | 215 | 3 | 96 | 7.39e-14 | 68.9 |
| MS.gene023860.t1 | MTR_3g037420 | 38.144 | 97 | 53 | 3 | 119 | 215 | 8 | 97 | 2.20e-11 | 60.5 |
| MS.gene023860.t1 | MTR_4g051430 | 25.592 | 211 | 100 | 5 | 29 | 214 | 163 | 341 | 7.19e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023860.t1 | AT4G36130 | 93.023 | 258 | 18 | 0 | 1 | 258 | 1 | 258 | 0.0 | 498 |
| MS.gene023860.t1 | AT2G18020 | 92.636 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 4.00e-175 | 483 |
| MS.gene023860.t1 | AT3G51190 | 84.519 | 239 | 36 | 1 | 1 | 238 | 1 | 239 | 3.45e-153 | 427 |
| MS.gene023860.t1 | ATCG00830 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 1.46e-25 | 102 |
| MS.gene023860.t1 | ATCG01310 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 1.46e-25 | 102 |
| MS.gene023860.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 9.27e-17 | 77.0 |
| MS.gene023860.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 9.27e-17 | 77.0 |
| MS.gene023860.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 9.27e-17 | 77.0 |
Find 93 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGAGGACTGGTCGTCTT+AGG | 0.241658 | 7.1:-26288296 | MS.gene023860:CDS |
| AATCTAAACTGCTTATTTAT+CGG | 0.245431 | 7.1:+26288245 | None:intergenic |
| GTCACTTGGCACAATCTTCT+TGG | 0.305373 | 7.1:+26288554 | None:intergenic |
| GAACTTGTGGTAAGCATTAC+CGG | 0.310318 | 7.1:+26288470 | None:intergenic |
| CCTCCGTGGGGATGCTCAAC+AGG | 0.334759 | 7.1:+26288399 | None:intergenic |
| GTTTATTTACTGCGGTAAAA+AGG | 0.335992 | 7.1:-26289509 | MS.gene023860:CDS |
| GCCATGATTGGGCAAGTTGC+TGG | 0.355007 | 7.1:-26288525 | MS.gene023860:CDS |
| GAAGTCGAGGGAACGGAAAC+GGG | 0.358567 | 7.1:+26289687 | None:intergenic |
| CAAGAGGACTGGTCGTCTTA+GGG | 0.368154 | 7.1:-26288295 | MS.gene023860:CDS |
| AGTGACTGCAGGGCCATGAT+TGG | 0.371357 | 7.1:-26288537 | MS.gene023860:CDS |
| TACCTAGAGGTATCATTATC+GGG | 0.400292 | 7.1:+26289346 | None:intergenic |
| GCTCCTTCTGTTTCTGATAA+CGG | 0.408848 | 7.1:+26289566 | None:intergenic |
| ATACCTAGAGGTATCATTAT+CGG | 0.410207 | 7.1:+26289345 | None:intergenic |
| GGAAACGGGCGGGGCCTTTG+CGG | 0.417226 | 7.1:+26289701 | None:intergenic |
| TTACAAATCACAGCACCTTC+AGG | 0.419108 | 7.1:+26289445 | None:intergenic |
| GCCTTTGCGGTGATGTGTGT+GGG | 0.435541 | 7.1:+26289714 | None:intergenic |
| ACCAGCAACTTGCCCAATCA+TGG | 0.440792 | 7.1:+26288524 | None:intergenic |
| CGAGGGAACGGAAACGGGCG+GGG | 0.441434 | 7.1:+26289692 | None:intergenic |
| AACTGAGAAGCCAATGTTGA+AGG | 0.451466 | 7.1:-26288493 | MS.gene023860:CDS |
| GGAGGTAATCACCAACATAT+TGG | 0.453068 | 7.1:-26288378 | MS.gene023860:CDS |
| CGTCAGTGACGACTCCTTTG+AGG | 0.454086 | 7.1:+26289647 | None:intergenic |
| TCGAGGGAACGGAAACGGGC+GGG | 0.454887 | 7.1:+26289691 | None:intergenic |
| CTCATTGCTGCCAAGAGGAC+TGG | 0.455821 | 7.1:-26288306 | MS.gene023860:CDS |
| GTCAGACGTGATGCTCCTCC+TGG | 0.456100 | 7.1:-26288342 | MS.gene023860:CDS |
| CGAAGTCGAGGGAACGGAAA+CGG | 0.463299 | 7.1:+26289686 | None:intergenic |
| GCATTACCGGCCTTCAACAT+TGG | 0.473847 | 7.1:+26288483 | None:intergenic |
| GCAAGAGGAGCACCGCGACC+TGG | 0.474064 | 7.1:+26289613 | None:intergenic |
| TACAGGATCAAGCTTCCATC+TGG | 0.475040 | 7.1:-26288579 | MS.gene023860:intron |
| AGATTGTGCCAAGTGACTGC+AGG | 0.475752 | 7.1:-26288548 | MS.gene023860:CDS |
| CCTCTTAGATCTATTCCTGA+AGG | 0.484222 | 7.1:-26289460 | MS.gene023860:CDS |
| AACTGTTGGCCTAAGGTTCG+TGG | 0.487779 | 7.1:-26288435 | MS.gene023860:CDS |
| GCTGCTGAGGGTTTGTATAC+CGG | 0.491518 | 7.1:-26289535 | MS.gene023860:CDS |
| TGTCATCCGTGCCCAACGTA+AGG | 0.492175 | 7.1:-26289758 | MS.gene023860:CDS |
| CGTTTCCGTTCCCTCGACTT+CGG | 0.496555 | 7.1:-26289685 | MS.gene023860:CDS |
| GTGACTGCAGGGCCATGATT+GGG | 0.501153 | 7.1:-26288536 | MS.gene023860:CDS |
| GGCCTTTGCGGTGATGTGTG+TGG | 0.508332 | 7.1:+26289713 | None:intergenic |
| GCTCCTCCTGGACAGAAGGT+TGG | 0.508354 | 7.1:-26288330 | MS.gene023860:CDS |
| GGAACCTGCTCCCTTACGTT+GGG | 0.510705 | 7.1:+26289747 | None:intergenic |
| CGTGCCCAACGTAAGGGAGC+AGG | 0.512987 | 7.1:-26289751 | MS.gene023860:CDS |
| TCCTCTTCACTCTGAACTTG+TGG | 0.513229 | 7.1:+26288457 | None:intergenic |
| CCTAAGACGACCAGTCCTCT+TGG | 0.514272 | 7.1:+26288296 | None:intergenic |
| ATTGGGCAAGTTGCTGGTGG+TGG | 0.517875 | 7.1:-26288519 | MS.gene023860:CDS |
| ATGAGACCAACCTTCTGTCC+AGG | 0.521573 | 7.1:+26288324 | None:intergenic |
| ATCATGGCCCTGCAGTCACT+TGG | 0.530422 | 7.1:+26288540 | None:intergenic |
| TGCTGTGATTTGTAATGTTG+AGG | 0.534385 | 7.1:-26289437 | MS.gene023860:CDS |
| AGCATCACGTCTGACAGTAC+TGG | 0.537912 | 7.1:+26288350 | None:intergenic |
| TTGGTGATTACCTCCTCCGT+GGG | 0.541006 | 7.1:+26288386 | None:intergenic |
| GTTGAGCATCCCCACGGAGG+AGG | 0.543276 | 7.1:-26288396 | MS.gene023860:CDS |
| CGTTGCGTTCGCCGAAGTCG+AGG | 0.545445 | 7.1:+26289674 | None:intergenic |
| GAAGAGGAACTGTTGGCCTA+AGG | 0.546745 | 7.1:-26288442 | MS.gene023860:CDS |
| ACTGACGTCATCCACGATCC+AGG | 0.551926 | 7.1:-26289631 | MS.gene023860:CDS |
| TGTAATGTTGAGGGTCATGT+TGG | 0.553570 | 7.1:-26289427 | MS.gene023860:CDS |
| GTCATCCACGATCCAGGTCG+CGG | 0.554431 | 7.1:-26289625 | MS.gene023860:CDS |
| TCGCGGTGCTCCTCTTGCTA+AGG | 0.557816 | 7.1:-26289608 | MS.gene023860:CDS |
| ATGATTGGGCAAGTTGCTGG+TGG | 0.561494 | 7.1:-26288522 | MS.gene023860:CDS |
| CTTCTGTTTCTGATAACGGA+AGG | 0.563357 | 7.1:+26289570 | None:intergenic |
| TGATGCTCCTCCTGGACAGA+AGG | 0.566122 | 7.1:-26288334 | MS.gene023860:CDS |
| CGGAACCTGCTCCCTTACGT+TGG | 0.568166 | 7.1:+26289746 | None:intergenic |
| TCTGATAACGGAAGGGATGA+CGG | 0.568851 | 7.1:+26289578 | None:intergenic |
| GCTGTGATTTGTAATGTTGA+GGG | 0.572615 | 7.1:-26289436 | MS.gene023860:CDS |
| TTCTGTTTCTGATAACGGAA+GGG | 0.573577 | 7.1:+26289571 | None:intergenic |
| GAGCACCGCGACCTGGATCG+TGG | 0.573801 | 7.1:+26289620 | None:intergenic |
| GAACGCAACGGTTACCTCAA+AGG | 0.574638 | 7.1:-26289661 | MS.gene023860:CDS |
| GTCGAGGGAACGGAAACGGG+CGG | 0.575776 | 7.1:+26289690 | None:intergenic |
| GTTCGCCGAAGTCGAGGGAA+CGG | 0.578749 | 7.1:+26289680 | None:intergenic |
| CTGCTCCCTTACGTTGGGCA+CGG | 0.579845 | 7.1:+26289752 | None:intergenic |
| GAGAAGCCAATGTTGAAGGC+CGG | 0.581735 | 7.1:-26288489 | MS.gene023860:CDS |
| TCAGAGTGAAGAGGAACTGT+TGG | 0.582492 | 7.1:-26288449 | MS.gene023860:CDS |
| GTCATCCGTGCCCAACGTAA+GGG | 0.585900 | 7.1:-26289757 | MS.gene023860:CDS |
| ATGTGTGTGGGATTTGAAAA+CGG | 0.586676 | 7.1:+26289726 | None:intergenic |
| CCTTCAGGAATAGATCTAAG+AGG | 0.588316 | 7.1:+26289460 | None:intergenic |
| ACCGCAGTAAATAAACTGAC+CGG | 0.589138 | 7.1:+26289516 | None:intergenic |
| ATAGCAACACCACGAACCTT+AGG | 0.594313 | 7.1:+26288426 | None:intergenic |
| ACCGGTCAGTTTATTTACTG+CGG | 0.597635 | 7.1:-26289517 | MS.gene023860:CDS |
| ACAATCTTCTTGGCACCAGA+TGG | 0.597976 | 7.1:+26288564 | None:intergenic |
| GATTGTGCCAAGTGACTGCA+GGG | 0.598947 | 7.1:-26288547 | MS.gene023860:CDS |
| CTCGACTTCGGCGAACGCAA+CGG | 0.608500 | 7.1:-26289673 | MS.gene023860:CDS |
| GTTGCGTTCGCCGAAGTCGA+GGG | 0.613842 | 7.1:+26289675 | None:intergenic |
| AAGAGGACTGGTCGTCTTAG+GGG | 0.622786 | 7.1:-26288294 | MS.gene023860:CDS |
| CGGAAAGTCACCTTAGCAAG+AGG | 0.624941 | 7.1:+26289598 | None:intergenic |
| TCCCACACACATCACCGCAA+AGG | 0.627541 | 7.1:-26289715 | MS.gene023860:CDS |
| GTTGGTGATTACCTCCTCCG+TGG | 0.630355 | 7.1:+26288385 | None:intergenic |
| ACCCCGATAATGATACCTCT+AGG | 0.637049 | 7.1:-26289348 | MS.gene023860:intron |
| TTGGTCTCATTGCTGCCAAG+AGG | 0.653221 | 7.1:-26288311 | MS.gene023860:CDS |
| TACTGGCATGACCAATATGT+TGG | 0.654768 | 7.1:+26288367 | None:intergenic |
| ACCACAAGTTCAGAGTGAAG+AGG | 0.655234 | 7.1:-26288458 | MS.gene023860:CDS |
| AATCCTGTTGAGCATCCCCA+CGG | 0.655918 | 7.1:-26288402 | MS.gene023860:CDS |
| ACCTAGAGGTATCATTATCG+GGG | 0.665372 | 7.1:+26289347 | None:intergenic |
| CTTCCGTTATCAGAAACAGA+AGG | 0.665450 | 7.1:-26289569 | MS.gene023860:CDS |
| GAGGGTCATGTTGGTGACCG+TGG | 0.688077 | 7.1:-26289418 | MS.gene023860:CDS |
| AGACCAACCTTCTGTCCAGG+AGG | 0.695738 | 7.1:+26288327 | None:intergenic |
| CCTGTTGAGCATCCCCACGG+AGG | 0.744930 | 7.1:-26288399 | MS.gene023860:CDS |
| TGGTGATTACCTCCTCCGTG+GGG | 0.779827 | 7.1:+26288387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCGATTAATATTAATTTA+AGG | - | chr7.1:26289322-26289341 | MS.gene023860:intron | 10.0% |
| !!! | AATATAACACTTTTTTATTA+GGG | - | chr7.1:26289358-26289377 | MS.gene023860:CDS | 10.0% |
| !!! | ATTTATTTTGGAATTAATTT+TGG | - | chr7.1:26288786-26288805 | MS.gene023860:intron | 10.0% |
| !!! | GATTATATTATGATTTATTT+TGG | - | chr7.1:26288774-26288793 | MS.gene023860:intron | 10.0% |
| !!! | TTAAAAATTTATACCTTTTT+TGG | - | chr7.1:26289226-26289245 | MS.gene023860:intron | 10.0% |
| !! | TTATTTGATGTTATTCTTAA+TGG | - | chr7.1:26288746-26288765 | MS.gene023860:intron | 15.0% |
| !!! | CAATATAACACTTTTTTATT+AGG | - | chr7.1:26289357-26289376 | MS.gene023860:CDS | 15.0% |
| !!! | TATCATTTAAAATCCAAAAA+AGG | + | chr7.1:26289242-26289261 | None:intergenic | 15.0% |
| !!! | TTATATTTTTGGATTGATTT+TGG | - | chr7.1:26288962-26288981 | MS.gene023860:intron | 15.0% |
| !! | AAATTTGAGTAGTAAATTCA+TGG | - | chr7.1:26289105-26289124 | MS.gene023860:intron | 20.0% |
| !! | AAGAATAAAAATATACCTAG+AGG | + | chr7.1:26288693-26288712 | None:intergenic | 20.0% |
| !!! | AAAATACTCTGAAAACTAAT+TGG | + | chr7.1:26289270-26289289 | None:intergenic | 20.0% |
| !!! | AATTAATTTTGGTATTTGAG+TGG | - | chr7.1:26288797-26288816 | MS.gene023860:intron | 20.0% |
| !!! | GTATTTTTAGTAGATTGAAT+TGG | - | chr7.1:26288984-26289003 | MS.gene023860:intron | 20.0% |
| ! | CTAGCACAATATAAACAAAT+CGG | + | chr7.1:26289160-26289179 | None:intergenic | 25.0% |
| ! | TAGCACAATATAAACAAATC+GGG | + | chr7.1:26289159-26289178 | None:intergenic | 25.0% |
| ! | TCAATAGAAATGTTTGATCT+GGG | - | chr7.1:26288830-26288849 | MS.gene023860:intron | 25.0% |
| ! | TGATTTCAATGCAGAAAATT+GGG | - | chr7.1:26289185-26289204 | MS.gene023860:intron | 25.0% |
| ! | TTCAATAGAAATGTTTGATC+TGG | - | chr7.1:26288829-26288848 | MS.gene023860:intron | 25.0% |
| ! | TTGATTTCAATGCAGAAAAT+TGG | - | chr7.1:26289184-26289203 | MS.gene023860:intron | 25.0% |
| !! | GAATTGATGTTAGTGTTTTT+GGG | - | chr7.1:26288918-26288937 | MS.gene023860:intron | 25.0% |
| !! | TGAATTGATGTTAGTGTTTT+TGG | - | chr7.1:26288917-26288936 | MS.gene023860:intron | 25.0% |
| !! | TTTAGGTGTATACTTGATTT+TGG | - | chr7.1:26289394-26289413 | MS.gene023860:CDS | 25.0% |
| !!! | AGGGTTTTGTTTGATTATTT+AGG | - | chr7.1:26289377-26289396 | MS.gene023860:CDS | 25.0% |
| AGATTGAATTGGAATTGAGT+GGG | - | chr7.1:26288995-26289014 | MS.gene023860:intron | 30.0% | |
| GTTTATTTACTGCGGTAAAA+AGG | - | chr7.1:26288514-26288533 | MS.gene023860:CDS | 30.0% | |
| TAGATTGAATTGGAATTGAG+TGG | - | chr7.1:26288994-26289013 | MS.gene023860:intron | 30.0% | |
| TCATAACTGAAGTGAAGTTA+TGG | - | chr7.1:26289290-26289309 | MS.gene023860:intron | 30.0% | |
| TGAAGTGAAGTTATGGATAT+AGG | - | chr7.1:26289297-26289316 | MS.gene023860:intron | 30.0% | |
| TTGGAGAGTAATGTTGAAAT+GGG | - | chr7.1:26289413-26289432 | MS.gene023860:CDS | 30.0% | |
| TTTGGAGAGTAATGTTGAAA+TGG | - | chr7.1:26289412-26289431 | MS.gene023860:CDS | 30.0% | |
| ! | ATACTCTGAAAACTAATTGG+AGG | + | chr7.1:26289267-26289286 | None:intergenic | 30.0% |
| !! | ATACCTAGAGGTATCATTAT+CGG | + | chr7.1:26288681-26288700 | None:intergenic | 30.0% |
| !!! | ATGTTAGTGTTTTTGGGTTA+TGG | - | chr7.1:26288924-26288943 | MS.gene023860:intron | 30.0% |
| !!! | TGAAATGGGTTTTGTTATAC+AGG | - | chr7.1:26289427-26289446 | MS.gene023860:CDS | 30.0% |
| ATCGGGTTCAAAATTCATCT+TGG | + | chr7.1:26289142-26289161 | None:intergenic | 35.0% | |
| ATGTGTGTGGGATTTGAAAA+CGG | + | chr7.1:26288300-26288319 | None:intergenic | 35.0% | |
| ! | GCTGTGATTTGTAATGTTGA+GGG | - | chr7.1:26288587-26288606 | MS.gene023860:intron | 35.0% |
| ! | TGCTGTGATTTGTAATGTTG+AGG | - | chr7.1:26288586-26288605 | MS.gene023860:intron | 35.0% |
| !! | TACCTAGAGGTATCATTATC+GGG | + | chr7.1:26288680-26288699 | None:intergenic | 35.0% |
| !! | TTCTGTTTCTGATAACGGAA+GGG | + | chr7.1:26288455-26288474 | None:intergenic | 35.0% |
| AACTGAGAAGCCAATGTTGA+AGG | - | chr7.1:26289530-26289549 | MS.gene023860:CDS | 40.0% | |
| ACCGCAGTAAATAAACTGAC+CGG | + | chr7.1:26288510-26288529 | None:intergenic | 40.0% | |
| ACCGGTCAGTTTATTTACTG+CGG | - | chr7.1:26288506-26288525 | MS.gene023860:CDS | 40.0% | |
| CCTCTTAGATCTATTCCTGA+AGG | - | chr7.1:26288563-26288582 | MS.gene023860:CDS | 40.0% | |
| CCTTCAGGAATAGATCTAAG+AGG | + | chr7.1:26288566-26288585 | None:intergenic | 40.0% | |
| CTTCCGTTATCAGAAACAGA+AGG | - | chr7.1:26288454-26288473 | MS.gene023860:CDS | 40.0% | |
| GAACTTGTGGTAAGCATTAC+CGG | + | chr7.1:26289556-26289575 | None:intergenic | 40.0% | |
| GGAGGTAATCACCAACATAT+TGG | - | chr7.1:26289645-26289664 | MS.gene023860:CDS | 40.0% | |
| TACTGGCATGACCAATATGT+TGG | + | chr7.1:26289659-26289678 | None:intergenic | 40.0% | |
| TGTAATGTTGAGGGTCATGT+TGG | - | chr7.1:26288596-26288615 | MS.gene023860:intron | 40.0% | |
| TTACAAATCACAGCACCTTC+AGG | + | chr7.1:26288581-26288600 | None:intergenic | 40.0% | |
| ! | AAAAAGGCGACTCTTGTTGT+TGG | - | chr7.1:26288530-26288549 | MS.gene023860:CDS | 40.0% |
| ! | AAGCTCTAGCAAAAACACCA+CGG | + | chr7.1:26288625-26288644 | None:intergenic | 40.0% |
| !! | ACCTAGAGGTATCATTATCG+GGG | + | chr7.1:26288679-26288698 | None:intergenic | 40.0% |
| !! | CTTCTGTTTCTGATAACGGA+AGG | + | chr7.1:26288456-26288475 | None:intergenic | 40.0% |
| !! | GCTCCTTCTGTTTCTGATAA+CGG | + | chr7.1:26288460-26288479 | None:intergenic | 40.0% |
| ACAATCTTCTTGGCACCAGA+TGG | + | chr7.1:26289462-26289481 | None:intergenic | 45.0% | |
| ACCACAAGTTCAGAGTGAAG+AGG | - | chr7.1:26289565-26289584 | MS.gene023860:CDS | 45.0% | |
| ACCCCGATAATGATACCTCT+AGG | - | chr7.1:26288675-26288694 | MS.gene023860:intron | 45.0% | |
| ATAGCAACACCACGAACCTT+AGG | + | chr7.1:26289600-26289619 | None:intergenic | 45.0% | |
| GTCACTTGGCACAATCTTCT+TGG | + | chr7.1:26289472-26289491 | None:intergenic | 45.0% | |
| TACAGGATCAAGCTTCCATC+TGG | - | chr7.1:26289444-26289463 | MS.gene023860:CDS | 45.0% | |
| TCAGAGTGAAGAGGAACTGT+TGG | - | chr7.1:26289574-26289593 | MS.gene023860:CDS | 45.0% | |
| TCCTCTTCACTCTGAACTTG+TGG | + | chr7.1:26289569-26289588 | None:intergenic | 45.0% | |
| !! | GGTGTTTTTGCTAGAGCTTC+TGG | - | chr7.1:26288626-26288645 | MS.gene023860:intron | 45.0% |
| !! | TCTGATAACGGAAGGGATGA+CGG | + | chr7.1:26288448-26288467 | None:intergenic | 45.0% |
| !!! | TTATTATTTGATTATATTTT+TGG | - | chr7.1:26288951-26288970 | MS.gene023860:intron | 5.0% |
| AATCCTGTTGAGCATCCCCA+CGG | - | chr7.1:26289621-26289640 | MS.gene023860:CDS | 50.0% | |
| ACCAGCAACTTGCCCAATCA+TGG | + | chr7.1:26289502-26289521 | None:intergenic | 50.0% | |
| AGATTGTGCCAAGTGACTGC+AGG | - | chr7.1:26289475-26289494 | MS.gene023860:CDS | 50.0% | |
| AGCATCACGTCTGACAGTAC+TGG | + | chr7.1:26289676-26289695 | None:intergenic | 50.0% | |
| ATGAGACCAACCTTCTGTCC+AGG | + | chr7.1:26289702-26289721 | None:intergenic | 50.0% | |
| ATGATTGGGCAAGTTGCTGG+TGG | - | chr7.1:26289501-26289520 | MS.gene023860:CDS | 50.0% | |
| CGGAAAGTCACCTTAGCAAG+AGG | + | chr7.1:26288428-26288447 | None:intergenic | 50.0% | |
| GAACGCAACGGTTACCTCAA+AGG | - | chr7.1:26288362-26288381 | MS.gene023860:CDS | 50.0% | |
| GAGAAGCCAATGTTGAAGGC+CGG | - | chr7.1:26289534-26289553 | MS.gene023860:CDS | 50.0% | |
| GATTGTGCCAAGTGACTGCA+GGG | - | chr7.1:26289476-26289495 | MS.gene023860:CDS | 50.0% | |
| GCATTACCGGCCTTCAACAT+TGG | + | chr7.1:26289543-26289562 | None:intergenic | 50.0% | |
| GCTGCTGAGGGTTTGTATAC+CGG | - | chr7.1:26288488-26288507 | MS.gene023860:CDS | 50.0% | |
| TTGGTCTCATTGCTGCCAAG+AGG | - | chr7.1:26289712-26289731 | MS.gene023860:CDS | 50.0% | |
| ! | AACTGTTGGCCTAAGGTTCG+TGG | - | chr7.1:26289588-26289607 | MS.gene023860:CDS | 50.0% |
| ! | GAAGAGGAACTGTTGGCCTA+AGG | - | chr7.1:26289581-26289600 | MS.gene023860:CDS | 50.0% |
| ! | GAGCTTTTCGTAGCTGCTGA+GGG | - | chr7.1:26288476-26288495 | MS.gene023860:CDS | 50.0% |
| ! | TTGGTGATTACCTCCTCCGT+GGG | + | chr7.1:26289640-26289659 | None:intergenic | 50.0% |
| !! | AAGAGGACTGGTCGTCTTAG+GGG | - | chr7.1:26289729-26289748 | MS.gene023860:CDS | 50.0% |
| !! | CAAGAGGACTGGTCGTCTTA+GGG | - | chr7.1:26289728-26289747 | MS.gene023860:CDS | 50.0% |
| ACTGACGTCATCCACGATCC+AGG | - | chr7.1:26288392-26288411 | MS.gene023860:CDS | 55.0% | |
| AGACCAACCTTCTGTCCAGG+AGG | + | chr7.1:26289699-26289718 | None:intergenic | 55.0% | |
| AGTGACTGCAGGGCCATGAT+TGG | - | chr7.1:26289486-26289505 | MS.gene023860:CDS | 55.0% | |
| ATCATGGCCCTGCAGTCACT+TGG | + | chr7.1:26289486-26289505 | None:intergenic | 55.0% | |
| ATTGGGCAAGTTGCTGGTGG+TGG | - | chr7.1:26289504-26289523 | MS.gene023860:CDS | 55.0% | |
| CCTAAGACGACCAGTCCTCT+TGG | + | chr7.1:26289730-26289749 | None:intergenic | 55.0% | |
| CGAAGTCGAGGGAACGGAAA+CGG | + | chr7.1:26288340-26288359 | None:intergenic | 55.0% | |
| CGTCAGTGACGACTCCTTTG+AGG | + | chr7.1:26288379-26288398 | None:intergenic | 55.0% | |
| CGTTTCCGTTCCCTCGACTT+CGG | - | chr7.1:26288338-26288357 | MS.gene023860:CDS | 55.0% | |
| CTCATTGCTGCCAAGAGGAC+TGG | - | chr7.1:26289717-26289736 | MS.gene023860:CDS | 55.0% | |
| GAAGTCGAGGGAACGGAAAC+GGG | + | chr7.1:26288339-26288358 | None:intergenic | 55.0% | |
| GCCATGATTGGGCAAGTTGC+TGG | - | chr7.1:26289498-26289517 | MS.gene023860:CDS | 55.0% | |
| GCCTTTGCGGTGATGTGTGT+GGG | + | chr7.1:26288312-26288331 | None:intergenic | 55.0% | |
| GGAACCTGCTCCCTTACGTT+GGG | + | chr7.1:26288279-26288298 | None:intergenic | 55.0% | |
| GTCATCCGTGCCCAACGTAA+GGG | - | chr7.1:26288266-26288285 | MS.gene023860:CDS | 55.0% | |
| GTGACTGCAGGGCCATGATT+GGG | - | chr7.1:26289487-26289506 | MS.gene023860:CDS | 55.0% | |
| TCCCACACACATCACCGCAA+AGG | - | chr7.1:26288308-26288327 | MS.gene023860:CDS | 55.0% | |
| TGATGCTCCTCCTGGACAGA+AGG | - | chr7.1:26289689-26289708 | MS.gene023860:CDS | 55.0% | |
| TGGTGATTACCTCCTCCGTG+GGG | + | chr7.1:26289639-26289658 | None:intergenic | 55.0% | |
| TGTCATCCGTGCCCAACGTA+AGG | - | chr7.1:26288265-26288284 | MS.gene023860:CDS | 55.0% | |
| ! | GGAGCTTTTCGTAGCTGCTG+AGG | - | chr7.1:26288475-26288494 | MS.gene023860:CDS | 55.0% |
| !! | CCAAGAGGACTGGTCGTCTT+AGG | - | chr7.1:26289727-26289746 | MS.gene023860:CDS | 55.0% |
| !! | GTTGGTGATTACCTCCTCCG+TGG | + | chr7.1:26289641-26289660 | None:intergenic | 55.0% |
| CGGAACCTGCTCCCTTACGT+TGG | + | chr7.1:26288280-26288299 | None:intergenic | 60.0% | |
| CTCGACTTCGGCGAACGCAA+CGG | - | chr7.1:26288350-26288369 | MS.gene023860:CDS | 60.0% | |
| CTGCTCCCTTACGTTGGGCA+CGG | + | chr7.1:26288274-26288293 | None:intergenic | 60.0% | |
| GCTCCTCCTGGACAGAAGGT+TGG | - | chr7.1:26289693-26289712 | MS.gene023860:CDS | 60.0% | |
| GGCCTTTGCGGTGATGTGTG+TGG | + | chr7.1:26288313-26288332 | None:intergenic | 60.0% | |
| GTCAGACGTGATGCTCCTCC+TGG | - | chr7.1:26289681-26289700 | MS.gene023860:CDS | 60.0% | |
| GTCATCCACGATCCAGGTCG+CGG | - | chr7.1:26288398-26288417 | MS.gene023860:CDS | 60.0% | |
| GTTCGCCGAAGTCGAGGGAA+CGG | + | chr7.1:26288346-26288365 | None:intergenic | 60.0% | |
| GTTGCGTTCGCCGAAGTCGA+GGG | + | chr7.1:26288351-26288370 | None:intergenic | 60.0% | |
| TCGCGGTGCTCCTCTTGCTA+AGG | - | chr7.1:26288415-26288434 | MS.gene023860:CDS | 60.0% | |
| !! | GAGGGTCATGTTGGTGACCG+TGG | - | chr7.1:26288605-26288624 | MS.gene023860:intron | 60.0% |
| CCTCCGTGGGGATGCTCAAC+AGG | + | chr7.1:26289627-26289646 | None:intergenic | 65.0% | |
| CCTGTTGAGCATCCCCACGG+AGG | - | chr7.1:26289624-26289643 | MS.gene023860:CDS | 65.0% | |
| CGTGCCCAACGTAAGGGAGC+AGG | - | chr7.1:26288272-26288291 | MS.gene023860:CDS | 65.0% | |
| CGTTGCGTTCGCCGAAGTCG+AGG | + | chr7.1:26288352-26288371 | None:intergenic | 65.0% | |
| GTCGAGGGAACGGAAACGGG+CGG | + | chr7.1:26288336-26288355 | None:intergenic | 65.0% | |
| GTTGAGCATCCCCACGGAGG+AGG | - | chr7.1:26289627-26289646 | MS.gene023860:CDS | 65.0% | |
| TCGAGGGAACGGAAACGGGC+GGG | + | chr7.1:26288335-26288354 | None:intergenic | 65.0% | |
| CGAGGGAACGGAAACGGGCG+GGG | + | chr7.1:26288334-26288353 | None:intergenic | 70.0% | |
| GGAAACGGGCGGGGCCTTTG+CGG | + | chr7.1:26288325-26288344 | None:intergenic | 70.0% | |
| ! | GAGCACCGCGACCTGGATCG+TGG | + | chr7.1:26288406-26288425 | None:intergenic | 70.0% |
| !! | GCAAGAGGAGCACCGCGACC+TGG | + | chr7.1:26288413-26288432 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 26288257 | 26289788 | 26288257 | ID=MS.gene023860 |
| chr7.1 | mRNA | 26288257 | 26289788 | 26288257 | ID=MS.gene023860.t1;Parent=MS.gene023860 |
| chr7.1 | exon | 26289349 | 26289788 | 26289349 | ID=MS.gene023860.t1.exon1;Parent=MS.gene023860.t1 |
| chr7.1 | CDS | 26289349 | 26289788 | 26289349 | ID=cds.MS.gene023860.t1;Parent=MS.gene023860.t1 |
| chr7.1 | exon | 26288257 | 26288596 | 26288257 | ID=MS.gene023860.t1.exon2;Parent=MS.gene023860.t1 |
| chr7.1 | CDS | 26288257 | 26288596 | 26288257 | ID=cds.MS.gene023860.t1;Parent=MS.gene023860.t1 |
| Gene Sequence |
| Protein sequence |
