Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64754.t1 | XP_003612146.1 | 100 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 2.10E-147 | 531.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64754.t1 | Q42064 | 92.6 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 5.6e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64754.t1 | G7JW56 | 100.0 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 1.5e-147 | 531.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene64754 | 0.82148 | 3.95E-53 | -1.69E-46 |
| MS.gene050252 | MS.gene64754 | 0.885756 | 6.18E-72 | -1.69E-46 |
| MS.gene050791 | MS.gene64754 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene64754 | 0.850943 | 1.22E-60 | -1.69E-46 |
| MS.gene057272 | MS.gene64754 | 0.858443 | 8.21E-63 | -1.69E-46 |
| MS.gene058994 | MS.gene64754 | 0.888111 | 7.89E-73 | -1.69E-46 |
| MS.gene059840 | MS.gene64754 | 0.810332 | 1.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64754 | MS.gene68049 | PPI |
| MS.gene023860 | MS.gene64754 | PPI |
| MS.gene68049 | MS.gene64754 | PPI |
| MS.gene59457 | MS.gene64754 | PPI |
| MS.gene27714 | MS.gene64754 | PPI |
| MS.gene64754 | MS.gene52229 | PPI |
| MS.gene64754 | MS.gene010610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64754.t1 | MTR_5g021800 | 100.000 | 258 | 0 | 0 | 1 | 258 | 1 | 258 | 0.0 | 527 |
| MS.gene64754.t1 | MTR_7g076940 | 95.736 | 258 | 11 | 0 | 1 | 258 | 1 | 258 | 0.0 | 508 |
| MS.gene64754.t1 | MTR_2g015360 | 39.316 | 117 | 65 | 3 | 98 | 214 | 51 | 161 | 4.00e-18 | 80.1 |
| MS.gene64754.t1 | MTR_3g035710 | 39.815 | 108 | 58 | 3 | 107 | 214 | 1 | 101 | 6.00e-16 | 73.2 |
| MS.gene64754.t1 | MTR_0002s0800 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.54e-13 | 67.4 |
| MS.gene64754.t1 | MTR_0002s0360 | 38.095 | 105 | 50 | 3 | 115 | 215 | 3 | 96 | 2.54e-13 | 67.4 |
| MS.gene64754.t1 | MTR_3g037420 | 37.113 | 97 | 54 | 3 | 119 | 215 | 8 | 97 | 9.75e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64754.t1 | AT4G36130 | 92.636 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 1.20e-180 | 496 |
| MS.gene64754.t1 | AT2G18020 | 91.860 | 258 | 21 | 0 | 1 | 258 | 1 | 258 | 7.25e-175 | 482 |
| MS.gene64754.t1 | AT3G51190 | 84.519 | 239 | 36 | 1 | 1 | 238 | 1 | 239 | 5.61e-152 | 424 |
| MS.gene64754.t1 | ATCG00830 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 2.22e-24 | 99.0 |
| MS.gene64754.t1 | ATCG01310 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 2.22e-24 | 99.0 |
| MS.gene64754.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
| MS.gene64754.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
| MS.gene64754.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 7.39e-18 | 80.1 |
Find 83 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGCTTACCACAAATTT+AGG | 0.139039 | 5.2:-12987437 | MS.gene64754:CDS |
| TTCTGTTTCTTATATCTAAA+AGG | 0.141313 | 5.2:+12988944 | None:intergenic |
| GCGAGATGGGTAGGGTTATC+AGG | 0.218220 | 5.2:-12989144 | None:intergenic |
| GCTAGTGGTGCACCGCGACC+TGG | 0.291779 | 5.2:+12988986 | None:intergenic |
| CCTTCAGGAATCATCCTTAA+TGG | 0.296951 | 5.2:+12988833 | None:intergenic |
| TAATGCTTACCACAAATTTA+GGG | 0.348170 | 5.2:-12987436 | MS.gene64754:CDS |
| AACCTAGAGGTATCATTATC+AGG | 0.354338 | 5.2:+12988719 | None:intergenic |
| GGCCTTTGCGATGGTGGGTG+TGG | 0.359733 | 5.2:+12989086 | None:intergenic |
| TCCTCTTCACCCTAAATTTG+TGG | 0.369145 | 5.2:+12987427 | None:intergenic |
| AAATAGTCTTATCAGTTAAT+CGG | 0.370160 | 5.2:+12987215 | None:intergenic |
| CGTTTCCGCAGTCTCGATTT+CGG | 0.389930 | 5.2:-12989058 | MS.gene64754:CDS |
| GCTATGATTGGGCAAGTTGC+AGG | 0.391634 | 5.2:-12987495 | MS.gene64754:CDS |
| AGCTGCTTCCGCTGCTGCTA+AGG | 0.391726 | 5.2:-12987238 | MS.gene64754:CDS |
| CTAAGAGAACTGGTCGTCTC+AGG | 0.393643 | 5.2:-12987266 | MS.gene64754:CDS |
| TTTCGTTCACTACTCCTTTG+AGG | 0.415458 | 5.2:+12989020 | None:intergenic |
| CTGGACAGTTTATTTATTGT+GGG | 0.419100 | 5.2:-12988889 | MS.gene64754:CDS |
| GCCTTTGCGATGGTGGGTGT+GGG | 0.420149 | 5.2:+12989087 | None:intergenic |
| TTACAAATAACCGCACCTTC+AGG | 0.420706 | 5.2:+12988818 | None:intergenic |
| CCTCCATGAGGATGTTCAAC+TGG | 0.422258 | 5.2:+12987369 | None:intergenic |
| GACAGGATTAAGCTACCATC+AGG | 0.430549 | 5.2:-12987549 | MS.gene64754:intron |
| TTAGGGTGAAGAGGAATTGT+TGG | 0.435774 | 5.2:-12987419 | MS.gene64754:CDS |
| TCTGTTTCTTATATCTAAAA+GGG | 0.435806 | 5.2:+12988945 | None:intergenic |
| GTTAGGCGTGATGCTCCTCC+TGG | 0.436286 | 5.2:-12987312 | MS.gene64754:CDS |
| CTCATTGCTGCTAAGAGAAC+TGG | 0.437152 | 5.2:-12987276 | MS.gene64754:CDS |
| TCGAGACTGCGGAAACGTGC+TGG | 0.440209 | 5.2:+12989064 | None:intergenic |
| ACTGGACAGTTTATTTATTG+TGG | 0.444957 | 5.2:-12988890 | MS.gene64754:CDS |
| AACTGAGAAGCCAATGCTTA+AGG | 0.445753 | 5.2:-12987463 | MS.gene64754:CDS |
| GGAGGTAACCACCAGCATAT+TGG | 0.446084 | 5.2:-12987348 | MS.gene64754:CDS |
| CTCGATTTCGGTGAAAGAAA+CGG | 0.463830 | 5.2:-12989046 | MS.gene64754:CDS |
| GCATTACCAGCCTTAAGCAT+TGG | 0.465748 | 5.2:+12987453 | None:intergenic |
| AGTGAGTGCAGAGCTATGAT+TGG | 0.480414 | 5.2:-12987507 | MS.gene64754:CDS |
| TGCTGGGCCTTTGCGATGGT+GGG | 0.484311 | 5.2:+12989081 | None:intergenic |
| AGGTTTCCGGCGAGATGGGT+AGG | 0.490187 | 5.2:-12989153 | None:intergenic |
| CGAGACTGCGGAAACGTGCT+GGG | 0.490564 | 5.2:+12989065 | None:intergenic |
| TTGGACATGCTAGTACTGTT+AGG | 0.490772 | 5.2:-12987329 | MS.gene64754:CDS |
| CTAGTGGTGCACCGCGACCT+GGG | 0.492115 | 5.2:+12988987 | None:intergenic |
| GTGCTGGGCCTTTGCGATGG+TGG | 0.492579 | 5.2:+12989080 | None:intergenic |
| ATCATAGCTCTGCACTCACT+TGG | 0.492967 | 5.2:+12987510 | None:intergenic |
| ACAATCTTCTTTGCCCCTGA+TGG | 0.501695 | 5.2:+12987534 | None:intergenic |
| AATTGTTGGCCTAAGGTTCG+TGG | 0.507434 | 5.2:-12987405 | MS.gene64754:CDS |
| GCTCCTCCTGGACAGAAGGT+TGG | 0.508354 | 5.2:-12987300 | MS.gene64754:CDS |
| GAAGAGGAATTGTTGGCCTA+AGG | 0.511303 | 5.2:-12987412 | MS.gene64754:CDS |
| ATCATTCACGACCCAGGTCG+CGG | 0.520973 | 5.2:-12988998 | MS.gene64754:CDS |
| ATGAGACCAACCTTCTGTCC+AGG | 0.521573 | 5.2:+12987294 | None:intergenic |
| ATTGGGCAAGTTGCAGGTGG+AGG | 0.539757 | 5.2:-12987489 | MS.gene64754:CDS |
| GTGAGTGCAGAGCTATGATT+GGG | 0.540155 | 5.2:-12987506 | MS.gene64754:CDS |
| GGTTTCCGGCGAGATGGGTA+GGG | 0.540978 | 5.2:-12989152 | None:intergenic |
| TACTAGCATGTCCAATATGC+TGG | 0.543123 | 5.2:+12987337 | None:intergenic |
| GTGGGTGTGGGACTTGAAAA+CGG | 0.548294 | 5.2:+12989099 | None:intergenic |
| GAGAAGCCAATGCTTAAGGC+TGG | 0.549710 | 5.2:-12987459 | MS.gene64754:CDS |
| TGATGCTCCTCCTGGACAGA+AGG | 0.551156 | 5.2:-12987304 | MS.gene64754:CDS |
| ACCACAAATTTAGGGTGAAG+AGG | 0.551702 | 5.2:-12987428 | MS.gene64754:CDS |
| TCTTATATCTAAAAGGGTGT+CGG | 0.552820 | 5.2:+12988951 | None:intergenic |
| AGGGCACAACGTAAAGGAGC+AGG | 0.552983 | 5.2:-12989124 | MS.gene64754:CDS |
| CGAGATGGGTAGGGTTATCA+GGG | 0.554090 | 5.2:-12989143 | None:intergenic |
| GAAAGAAACGGTTACCTCAA+AGG | 0.558738 | 5.2:-12989034 | MS.gene64754:CDS |
| GTTATCAGGGCACAACGTAA+AGG | 0.562139 | 5.2:-12989130 | MS.gene64754:CDS |
| AACGAAATCATTCACGACCC+AGG | 0.570840 | 5.2:-12989004 | MS.gene64754:CDS |
| TAAGAGAACTGGTCGTCTCA+GGG | 0.573235 | 5.2:-12987265 | MS.gene64754:CDS |
| TCGCGGTGCACCACTAGCTA+AGG | 0.577052 | 5.2:-12988981 | MS.gene64754:CDS |
| AATCCAGTTGAACATCCTCA+TGG | 0.581222 | 5.2:-12987372 | MS.gene64754:CDS |
| AACGTGCTGGGCCTTTGCGA+TGG | 0.587555 | 5.2:+12989077 | None:intergenic |
| GCTGCTGAGGGACTTTACAC+TGG | 0.588705 | 5.2:-12988908 | MS.gene64754:CDS |
| TGTAATGTTGAACATCATGT+TGG | 0.589500 | 5.2:-12988800 | MS.gene64754:CDS |
| ATAGCCACACCACGAACCTT+AGG | 0.594313 | 5.2:+12987396 | None:intergenic |
| TCCCACACCCACCATCGCAA+AGG | 0.598343 | 5.2:-12989088 | MS.gene64754:CDS |
| CCATTAAGGATGATTCCTGA+AGG | 0.598808 | 5.2:-12988833 | MS.gene64754:CDS |
| TTGGCCTAAGGTTCGTGGTG+TGG | 0.606540 | 5.2:-12987400 | MS.gene64754:CDS |
| ACAGGATTAAGCTACCATCA+GGG | 0.606815 | 5.2:-12987548 | MS.gene64754:intron |
| GTTGAACATCCTCATGGAGG+AGG | 0.607255 | 5.2:-12987366 | MS.gene64754:CDS |
| ATCCTGATAATGATACCTCT+AGG | 0.627712 | 5.2:-12988721 | MS.gene64754:intron |
| ATGATTGGGCAAGTTGCAGG+TGG | 0.627869 | 5.2:-12987492 | MS.gene64754:CDS |
| AAGGATGATTCCTGAAGGTG+CGG | 0.634290 | 5.2:-12988828 | MS.gene64754:CDS |
| CAGGATTAAGCTACCATCAG+GGG | 0.634909 | 5.2:-12987547 | MS.gene64754:CDS |
| TTAATCGGCCTTAGCAGCAG+CGG | 0.643504 | 5.2:+12987230 | None:intergenic |
| GAACATCATGTTGGTGATCG+TGG | 0.646474 | 5.2:-12988791 | MS.gene64754:CDS |
| TTTCACCGAAATCGAGACTG+CGG | 0.661724 | 5.2:+12989053 | None:intergenic |
| TAGCATGTCCAATATGCTGG+TGG | 0.670638 | 5.2:+12987340 | None:intergenic |
| CGGAATGTGACCTTAGCTAG+TGG | 0.672073 | 5.2:+12988971 | None:intergenic |
| AAGAGAACTGGTCGTCTCAG+GGG | 0.684178 | 5.2:-12987264 | MS.gene64754:CDS |
| TGGTGGTTACCTCCTCCATG+AGG | 0.690890 | 5.2:+12987357 | None:intergenic |
| AGACCAACCTTCTGTCCAGG+AGG | 0.695738 | 5.2:+12987297 | None:intergenic |
| CCAGTTGAACATCCTCATGG+AGG | 0.726090 | 5.2:-12987369 | MS.gene64754:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACAAATATGATTTG+TGG | - | chr5.2:12987779-12987798 | MS.gene64754:intron | 15.0% |
| !! | TATAAAAATTTCAATTACGT+GGG | - | chr5.2:12988646-12988665 | MS.gene64754:intron | 15.0% |
| !! | TGCAATATGTTAATTAAAAA+TGG | + | chr5.2:12987729-12987748 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTAACATATTGC+AGG | - | chr5.2:12987728-12987747 | MS.gene64754:intron | 15.0% |
| !! | CTTAAAAATTTGAATGATGT+GGG | - | chr5.2:12988300-12988319 | MS.gene64754:intron | 20.0% |
| !! | GTATAAAAATTTCAATTACG+TGG | - | chr5.2:12988645-12988664 | MS.gene64754:intron | 20.0% |
| !! | TTAATTAACATTAGCAAAGA+TGG | - | chr5.2:12987929-12987948 | MS.gene64754:intron | 20.0% |
| !!! | ATTTAACTTTTACTGATGAT+GGG | - | chr5.2:12988782-12988801 | MS.gene64754:CDS | 20.0% |
| !!! | TATTTAACTTTTACTGATGA+TGG | - | chr5.2:12988781-12988800 | MS.gene64754:CDS | 20.0% |
| !!! | TCTGTTTCTTATATCTAAAA+GGG | + | chr5.2:12987427-12987446 | None:intergenic | 20.0% |
| !!! | TTCTGTTTCTTATATCTAAA+AGG | + | chr5.2:12987428-12987447 | None:intergenic | 20.0% |
| ! | AATTAGAAATGACAATGTTG+GGG | - | chr5.2:12987992-12988011 | MS.gene64754:intron | 25.0% |
| ! | AGAATTAGAAATGACAATGT+TGG | - | chr5.2:12987990-12988009 | MS.gene64754:intron | 25.0% |
| ! | ATGACACACTAATTTCTAAA+TGG | + | chr5.2:12987859-12987878 | None:intergenic | 25.0% |
| ! | GAATTAGAAATGACAATGTT+GGG | - | chr5.2:12987991-12988010 | MS.gene64754:intron | 25.0% |
| ! | GCTTAAAAATTTGAATGATG+TGG | - | chr5.2:12988299-12988318 | MS.gene64754:intron | 25.0% |
| ! | TAATGCTTACCACAAATTTA+GGG | - | chr5.2:12988933-12988952 | MS.gene64754:CDS | 25.0% |
| ! | TATAAACGCAGTTACATTTA+TGG | + | chr5.2:12988494-12988513 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACTAGTAAGA+AGG | - | chr5.2:12988161-12988180 | MS.gene64754:intron | 25.0% |
| !! | CTTTTTGATAGAACACTATA+AGG | - | chr5.2:12988216-12988235 | MS.gene64754:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr5.2:12988153-12988172 | None:intergenic | 25.0% |
| AAAATGTGGATTCTGTAGTA+AGG | - | chr5.2:12988079-12988098 | MS.gene64754:intron | 30.0% | |
| AAAATTTCAATTACGTGGGA+TGG | - | chr5.2:12988650-12988669 | MS.gene64754:intron | 30.0% | |
| ACTGGACAGTTTATTTATTG+TGG | - | chr5.2:12987479-12987498 | MS.gene64754:CDS | 30.0% | |
| AGATAGTAAGAACTAGACTT+TGG | - | chr5.2:12988040-12988059 | MS.gene64754:intron | 30.0% | |
| ATTAGAAATGACAATGTTGG+GGG | - | chr5.2:12987993-12988012 | MS.gene64754:intron | 30.0% | |
| CTGGACAGTTTATTTATTGT+GGG | - | chr5.2:12987480-12987499 | MS.gene64754:CDS | 30.0% | |
| GTAATGCTTACCACAAATTT+AGG | - | chr5.2:12988932-12988951 | MS.gene64754:CDS | 30.0% | |
| GTTAATCAATCATAACTGTC+CGG | - | chr5.2:12988451-12988470 | MS.gene64754:intron | 30.0% | |
| TATGTTAATGTACTTCGTAG+TGG | - | chr5.2:12987821-12987840 | MS.gene64754:intron | 30.0% | |
| TGTAATGTTGAACATCATGT+TGG | - | chr5.2:12987569-12987588 | MS.gene64754:intron | 30.0% | |
| ! | AAAAAAGCTACTCTTGTTGT+TGG | - | chr5.2:12987503-12987522 | MS.gene64754:CDS | 30.0% |
| ! | AATATGATTTGTGGTGATGA+TGG | - | chr5.2:12987788-12987807 | MS.gene64754:intron | 30.0% |
| ! | TCTTATATCTAAAAGGGTGT+CGG | + | chr5.2:12987421-12987440 | None:intergenic | 30.0% |
| ! | TGTGAAACTTTTTGTACTTC+TGG | - | chr5.2:12988546-12988565 | MS.gene64754:intron | 30.0% |
| ! | TTGGAAATGTTTTGCCATTA+AGG | - | chr5.2:12987522-12987541 | MS.gene64754:CDS | 30.0% |
| AGTAAGGAGAGTAGATTAGA+TGG | - | chr5.2:12988095-12988114 | MS.gene64754:intron | 35.0% | |
| CAAAGATGGAGATGTAACAT+GGG | - | chr5.2:12987943-12987962 | MS.gene64754:intron | 35.0% | |
| CTTACTATCTTTCCTACTGT+AGG | + | chr5.2:12988030-12988049 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | - | chr5.2:12988182-12988201 | MS.gene64754:intron | 35.0% | |
| GTGCATGGAAATTATACTCT+TGG | - | chr5.2:12988568-12988587 | MS.gene64754:intron | 35.0% | |
| TAGTAAGAACTAGACTTTGG+TGG | - | chr5.2:12988043-12988062 | MS.gene64754:intron | 35.0% | |
| ! | ATCCTGATAATGATACCTCT+AGG | - | chr5.2:12987648-12987667 | MS.gene64754:intron | 35.0% |
| !! | AACCTAGAGGTATCATTATC+AGG | + | chr5.2:12987653-12987672 | None:intergenic | 35.0% |
| !!! | GGTGTTCATGTTTTTTTGAC+AGG | - | chr5.2:12988803-12988822 | MS.gene64754:CDS | 35.0% |
| AACTGAGAAGCCAATGCTTA+AGG | - | chr5.2:12988906-12988925 | MS.gene64754:CDS | 40.0% | |
| AAGGAGAGTAGATTAGATGG+AGG | - | chr5.2:12988098-12988117 | MS.gene64754:intron | 40.0% | |
| AATCCAGTTGAACATCCTCA+TGG | - | chr5.2:12988997-12989016 | MS.gene64754:CDS | 40.0% | |
| ACAGGATTAAGCTACCATCA+GGG | - | chr5.2:12988821-12988840 | MS.gene64754:CDS | 40.0% | |
| AGGAGAGTAGATTAGATGGA+GGG | - | chr5.2:12988099-12988118 | MS.gene64754:intron | 40.0% | |
| CACATACACGAAAGTTTACG+TGG | - | chr5.2:12988429-12988448 | MS.gene64754:intron | 40.0% | |
| CCATTAAGGATGATTCCTGA+AGG | - | chr5.2:12987536-12987555 | MS.gene64754:CDS | 40.0% | |
| CCTTCAGGAATCATCCTTAA+TGG | + | chr5.2:12987539-12987558 | None:intergenic | 40.0% | |
| CTCGATTTCGGTGAAAGAAA+CGG | - | chr5.2:12987323-12987342 | MS.gene64754:CDS | 40.0% | |
| GAAAGAAACGGTTACCTCAA+AGG | - | chr5.2:12987335-12987354 | MS.gene64754:CDS | 40.0% | |
| GAAGTCAAATCACTAGAGGT+AGG | - | chr5.2:12988121-12988140 | MS.gene64754:intron | 40.0% | |
| GCAAAGATGGAGATGTAACA+TGG | - | chr5.2:12987942-12987961 | MS.gene64754:intron | 40.0% | |
| TACTAGCATGTCCAATATGC+TGG | + | chr5.2:12989035-12989054 | None:intergenic | 40.0% | |
| TCCTCTTCACCCTAAATTTG+TGG | + | chr5.2:12988945-12988964 | None:intergenic | 40.0% | |
| TTACAAATAACCGCACCTTC+AGG | + | chr5.2:12987554-12987573 | None:intergenic | 40.0% | |
| TTAGGGTGAAGAGGAATTGT+TGG | - | chr5.2:12988950-12988969 | MS.gene64754:CDS | 40.0% | |
| TTGGACATGCTAGTACTGTT+AGG | - | chr5.2:12989040-12989059 | MS.gene64754:CDS | 40.0% | |
| TTTCGTTCACTACTCCTTTG+AGG | + | chr5.2:12987352-12987371 | None:intergenic | 40.0% | |
| ! | ACCACAAATTTAGGGTGAAG+AGG | - | chr5.2:12988941-12988960 | MS.gene64754:CDS | 40.0% |
| ! | AGAACTAGACTTTGGTGGTT+TGG | - | chr5.2:12988048-12988067 | MS.gene64754:intron | 40.0% |
| ! | CTTTTTGTACTTCTGGTGCA+TGG | - | chr5.2:12988553-12988572 | MS.gene64754:intron | 40.0% |
| ! | GAACTAGACTTTGGTGGTTT+GGG | - | chr5.2:12988049-12988068 | MS.gene64754:intron | 40.0% |
| AACGAAATCATTCACGACCC+AGG | - | chr5.2:12987365-12987384 | MS.gene64754:CDS | 45.0% | |
| AAGGATGATTCCTGAAGGTG+CGG | - | chr5.2:12987541-12987560 | MS.gene64754:CDS | 45.0% | |
| ACAATCTTCTTTGCCCCTGA+TGG | + | chr5.2:12988838-12988857 | None:intergenic | 45.0% | |
| AGTGAGTGCAGAGCTATGAT+TGG | - | chr5.2:12988862-12988881 | MS.gene64754:CDS | 45.0% | |
| CAGGATTAAGCTACCATCAG+GGG | - | chr5.2:12988822-12988841 | MS.gene64754:CDS | 45.0% | |
| CTCATTGCTGCTAAGAGAAC+TGG | - | chr5.2:12989093-12989112 | MS.gene64754:CDS | 45.0% | |
| CTTATCCCACTATGTGGGAT+CGG | + | chr5.2:12988259-12988278 | None:intergenic | 45.0% | |
| GACAGGATTAAGCTACCATC+AGG | - | chr5.2:12988820-12988839 | MS.gene64754:CDS | 45.0% | |
| GAGATGTAACATGGGATGTG+TGG | - | chr5.2:12987951-12987970 | MS.gene64754:intron | 45.0% | |
| GAGGGAAGTCAAATCACTAG+AGG | - | chr5.2:12988117-12988136 | MS.gene64754:intron | 45.0% | |
| GATGTGTGGAAAGACTAGAC+GGG | - | chr5.2:12987965-12987984 | MS.gene64754:intron | 45.0% | |
| GCATTACCAGCCTTAAGCAT+TGG | + | chr5.2:12988919-12988938 | None:intergenic | 45.0% | |
| GGATGTGTGGAAAGACTAGA+CGG | - | chr5.2:12987964-12987983 | MS.gene64754:intron | 45.0% | |
| GGTCAAGCAACTTGTATGAC+CGG | + | chr5.2:12988473-12988492 | None:intergenic | 45.0% | |
| GTGAGAGAGAACAAACCTAG+AGG | + | chr5.2:12987666-12987685 | None:intergenic | 45.0% | |
| GTGAGTGCAGAGCTATGATT+GGG | - | chr5.2:12988863-12988882 | MS.gene64754:CDS | 45.0% | |
| GTTATCAGGGCACAACGTAA+AGG | - | chr5.2:12987239-12987258 | MS.gene64754:CDS | 45.0% | |
| GTTTGGGCATGTGGAAAATG+TGG | - | chr5.2:12988065-12988084 | MS.gene64754:intron | 45.0% | |
| TAAGAGAACTGGTCGTCTCA+GGG | - | chr5.2:12989104-12989123 | MS.gene64754:CDS | 45.0% | |
| TAGCATGTCCAATATGCTGG+TGG | + | chr5.2:12989032-12989051 | None:intergenic | 45.0% | |
| TCAATTACGTGGGATGGTGA+TGG | - | chr5.2:12988656-12988675 | MS.gene64754:intron | 45.0% | |
| TTTCACCGAAATCGAGACTG+CGG | + | chr5.2:12987319-12987338 | None:intergenic | 45.0% | |
| ! | AATTGTTGGCCTAAGGTTCG+TGG | - | chr5.2:12988964-12988983 | MS.gene64754:CDS | 45.0% |
| ! | ATCATAGCTCTGCACTCACT+TGG | + | chr5.2:12988862-12988881 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTATGT+GGG | + | chr5.2:12988264-12988283 | None:intergenic | 45.0% |
| ! | GAAGAGGAATTGTTGGCCTA+AGG | - | chr5.2:12988957-12988976 | MS.gene64754:CDS | 45.0% |
| !! | GAACATCATGTTGGTGATCG+TGG | - | chr5.2:12987578-12987597 | MS.gene64754:intron | 45.0% |
| AAGAGAACTGGTCGTCTCAG+GGG | - | chr5.2:12989105-12989124 | MS.gene64754:CDS | 50.0% | |
| ATAGCCACACCACGAACCTT+AGG | + | chr5.2:12988976-12988995 | None:intergenic | 50.0% | |
| ATGAGACCAACCTTCTGTCC+AGG | + | chr5.2:12989078-12989097 | None:intergenic | 50.0% | |
| ATGATTGGGCAAGTTGCAGG+TGG | - | chr5.2:12988877-12988896 | MS.gene64754:CDS | 50.0% | |
| ATGTAGCCGATCCCACATAG+TGG | - | chr5.2:12988250-12988269 | MS.gene64754:intron | 50.0% | |
| CCAGTTGAACATCCTCATGG+AGG | - | chr5.2:12989000-12989019 | MS.gene64754:CDS | 50.0% | |
| CCTCCATGAGGATGTTCAAC+TGG | + | chr5.2:12989003-12989022 | None:intergenic | 50.0% | |
| CGGAATGTGACCTTAGCTAG+TGG | + | chr5.2:12987401-12987420 | None:intergenic | 50.0% | |
| CGTTTCCGCAGTCTCGATTT+CGG | - | chr5.2:12987311-12987330 | MS.gene64754:CDS | 50.0% | |
| CTAAGAGAACTGGTCGTCTC+AGG | - | chr5.2:12989103-12989122 | MS.gene64754:CDS | 50.0% | |
| GAGAAGCCAATGCTTAAGGC+TGG | - | chr5.2:12988910-12988929 | MS.gene64754:CDS | 50.0% | |
| GCTATGATTGGGCAAGTTGC+AGG | - | chr5.2:12988874-12988893 | MS.gene64754:CDS | 50.0% | |
| GGAGGTAACCACCAGCATAT+TGG | - | chr5.2:12989021-12989040 | MS.gene64754:CDS | 50.0% | |
| GTAGCACTAGCACCTACAGT+AGG | - | chr5.2:12988015-12988034 | MS.gene64754:intron | 50.0% | |
| GTGGGTGTGGGACTTGAAAA+CGG | + | chr5.2:12987273-12987292 | None:intergenic | 50.0% | |
| GTTGAACATCCTCATGGAGG+AGG | - | chr5.2:12989003-12989022 | MS.gene64754:CDS | 50.0% | |
| TGTAGCCGATCCCACATAGT+GGG | - | chr5.2:12988251-12988270 | MS.gene64754:intron | 50.0% | |
| TTAATCGGCCTTAGCAGCAG+CGG | + | chr5.2:12989142-12989161 | None:intergenic | 50.0% | |
| ! | ACTTTGGTGGTTTGGGCATG+TGG | - | chr5.2:12988056-12988075 | MS.gene64754:intron | 50.0% |
| ! | AGAGCTTTTCGTTGCTGCTG+AGG | - | chr5.2:12987448-12987467 | MS.gene64754:CDS | 50.0% |
| ! | CCAAGCCTTATCCCACTATG+TGG | + | chr5.2:12988265-12988284 | None:intergenic | 50.0% |
| ! | CCACATAGTGGGATAAGGCT+TGG | - | chr5.2:12988262-12988281 | MS.gene64754:intron | 50.0% |
| ! | CGATCCCACATAGTGGGATA+AGG | - | chr5.2:12988257-12988276 | MS.gene64754:intron | 50.0% |
| ! | GAGCTTTTCGTTGCTGCTGA+GGG | - | chr5.2:12987449-12987468 | MS.gene64754:CDS | 50.0% |
| ! | GGTGCTTTTGCTAGGTGTTC+TGG | - | chr5.2:12987599-12987618 | MS.gene64754:intron | 50.0% |
| ! | GTGATCGTGGTGCTTTTGCT+AGG | - | chr5.2:12987591-12987610 | MS.gene64754:intron | 50.0% |
| AGACCAACCTTCTGTCCAGG+AGG | + | chr5.2:12989075-12989094 | None:intergenic | 55.0% | |
| AGGGCACAACGTAAAGGAGC+AGG | - | chr5.2:12987245-12987264 | MS.gene64754:CDS | 55.0% | |
| ATCATTCACGACCCAGGTCG+CGG | - | chr5.2:12987371-12987390 | MS.gene64754:CDS | 55.0% | |
| ATTGGGCAAGTTGCAGGTGG+AGG | - | chr5.2:12988880-12988899 | MS.gene64754:CDS | 55.0% | |
| GCTGCTGAGGGACTTTACAC+TGG | - | chr5.2:12987461-12987480 | MS.gene64754:CDS | 55.0% | |
| TGATGCTCCTCCTGGACAGA+AGG | - | chr5.2:12989065-12989084 | MS.gene64754:CDS | 55.0% | |
| TGGTGGTTACCTCCTCCATG+AGG | + | chr5.2:12989015-12989034 | None:intergenic | 55.0% | |
| TTGGCCTAAGGTTCGTGGTG+TGG | - | chr5.2:12988969-12988988 | MS.gene64754:CDS | 55.0% | |
| AACGTGCTGGGCCTTTGCGA+TGG | + | chr5.2:12987295-12987314 | None:intergenic | 60.0% | |
| AGCTGCTTCCGCTGCTGCTA+AGG | - | chr5.2:12989131-12989150 | MS.gene64754:CDS | 60.0% | |
| CGAGACTGCGGAAACGTGCT+GGG | + | chr5.2:12987307-12987326 | None:intergenic | 60.0% | |
| GCTCCTCCTGGACAGAAGGT+TGG | - | chr5.2:12989069-12989088 | MS.gene64754:CDS | 60.0% | |
| GTTAGGCGTGATGCTCCTCC+TGG | - | chr5.2:12989057-12989076 | MS.gene64754:CDS | 60.0% | |
| TCCCACACCCACCATCGCAA+AGG | - | chr5.2:12987281-12987300 | MS.gene64754:CDS | 60.0% | |
| TCGAGACTGCGGAAACGTGC+TGG | + | chr5.2:12987308-12987327 | None:intergenic | 60.0% | |
| TCGCGGTGCACCACTAGCTA+AGG | - | chr5.2:12987388-12987407 | MS.gene64754:CDS | 60.0% | |
| TGCTGGGCCTTTGCGATGGT+GGG | + | chr5.2:12987291-12987310 | None:intergenic | 60.0% | |
| !! | GCCTTTGCGATGGTGGGTGT+GGG | + | chr5.2:12987285-12987304 | None:intergenic | 60.0% |
| CTAGTGGTGCACCGCGACCT+GGG | + | chr5.2:12987385-12987404 | None:intergenic | 65.0% | |
| GTGCTGGGCCTTTGCGATGG+TGG | + | chr5.2:12987292-12987311 | None:intergenic | 65.0% | |
| !! | GGCCTTTGCGATGGTGGGTG+TGG | + | chr5.2:12987286-12987305 | None:intergenic | 65.0% |
| GCTAGTGGTGCACCGCGACC+TGG | + | chr5.2:12987386-12987405 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 12987230 | 12989161 | 12987230 | ID=MS.gene64754 |
| chr5.2 | mRNA | 12987230 | 12989161 | 12987230 | ID=MS.gene64754.t1;Parent=MS.gene64754 |
| chr5.2 | exon | 12988722 | 12989161 | 12988722 | ID=MS.gene64754.t1.exon1;Parent=MS.gene64754.t1 |
| chr5.2 | CDS | 12988722 | 12989161 | 12988722 | ID=cds.MS.gene64754.t1;Parent=MS.gene64754.t1 |
| chr5.2 | exon | 12987230 | 12987566 | 12987230 | ID=MS.gene64754.t1.exon2;Parent=MS.gene64754.t1 |
| chr5.2 | CDS | 12987230 | 12987566 | 12987230 | ID=cds.MS.gene64754.t1;Parent=MS.gene64754.t1 |
| Gene Sequence |
| Protein sequence |
