Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52229.t1 | XP_003623912.1 | 100 | 259 | 0 | 0 | 1 | 259 | 1 | 259 | 6.10E-147 | 530 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52229.t1 | Q42064 | 93.0 | 258 | 18 | 0 | 1 | 258 | 1 | 258 | 3.3e-141 | 502.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52229.t1 | G7L3L0 | 100.0 | 259 | 0 | 0 | 1 | 259 | 1 | 259 | 4.4e-147 | 530.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52229 | MS.gene010610 | PPI |
| MS.gene023860 | MS.gene52229 | PPI |
| MS.gene68049 | MS.gene52229 | PPI |
| MS.gene59457 | MS.gene52229 | PPI |
| MS.gene27714 | MS.gene52229 | PPI |
| MS.gene64754 | MS.gene52229 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52229.t1 | MTR_7g076940 | 100.000 | 259 | 0 | 0 | 1 | 259 | 1 | 259 | 0.0 | 528 |
| MS.gene52229.t1 | MTR_5g021800 | 95.736 | 258 | 11 | 0 | 1 | 258 | 1 | 258 | 0.0 | 508 |
| MS.gene52229.t1 | MTR_2g015360 | 41.026 | 117 | 63 | 3 | 98 | 214 | 51 | 161 | 7.67e-19 | 82.0 |
| MS.gene52229.t1 | MTR_3g035710 | 40.741 | 108 | 57 | 3 | 107 | 214 | 1 | 101 | 3.18e-16 | 73.9 |
| MS.gene52229.t1 | MTR_0002s0800 | 39.048 | 105 | 49 | 3 | 115 | 215 | 3 | 96 | 7.39e-14 | 68.9 |
| MS.gene52229.t1 | MTR_0002s0360 | 39.048 | 105 | 49 | 3 | 115 | 215 | 3 | 96 | 7.39e-14 | 68.9 |
| MS.gene52229.t1 | MTR_3g037420 | 38.144 | 97 | 53 | 3 | 119 | 215 | 8 | 97 | 2.20e-11 | 60.5 |
| MS.gene52229.t1 | MTR_4g051430 | 25.592 | 211 | 100 | 5 | 29 | 214 | 163 | 341 | 7.19e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52229.t1 | AT4G36130 | 93.023 | 258 | 18 | 0 | 1 | 258 | 1 | 258 | 0.0 | 498 |
| MS.gene52229.t1 | AT2G18020 | 92.636 | 258 | 19 | 0 | 1 | 258 | 1 | 258 | 4.00e-175 | 483 |
| MS.gene52229.t1 | AT3G51190 | 84.519 | 239 | 36 | 1 | 1 | 238 | 1 | 239 | 3.45e-153 | 427 |
| MS.gene52229.t1 | ATCG00830 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 1.46e-25 | 102 |
| MS.gene52229.t1 | ATCG01310 | 32.632 | 190 | 108 | 4 | 29 | 214 | 60 | 233 | 1.46e-25 | 102 |
| MS.gene52229.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 9.27e-17 | 77.0 |
| MS.gene52229.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 9.27e-17 | 77.0 |
| MS.gene52229.t1 | AT2G44065 | 36.691 | 139 | 80 | 3 | 97 | 234 | 58 | 189 | 9.27e-17 | 77.0 |
Find 92 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTAGAGGTATCATTATC+AGG | 0.241334 | 7.4:+28798202 | None:intergenic |
| CCAAGAGGACTGGTCGTCTT+AGG | 0.241658 | 7.4:-28797177 | MS.gene52229:CDS |
| AATCTAAACTGCTTATTTAT+CGG | 0.245431 | 7.4:+28797126 | None:intergenic |
| GTCACTTGGCACAATCTTCT+TGG | 0.305373 | 7.4:+28797435 | None:intergenic |
| GAACTTGTGGTAAGCATTAC+CGG | 0.310318 | 7.4:+28797351 | None:intergenic |
| CCTCCGTGGGGATGCTCAAC+AGG | 0.334759 | 7.4:+28797280 | None:intergenic |
| GCCATGATTGGGCAAGTTGC+TGG | 0.355007 | 7.4:-28797406 | MS.gene52229:CDS |
| GAAGTCGAGGGAACGGAAAC+GGG | 0.358567 | 7.4:+28798543 | None:intergenic |
| CAAGAGGACTGGTCGTCTTA+GGG | 0.368154 | 7.4:-28797176 | MS.gene52229:CDS |
| AGTGACTGCAGGGCCATGAT+TGG | 0.371357 | 7.4:-28797418 | MS.gene52229:CDS |
| GCTCCTTCTGTTTCTGATAA+CGG | 0.408848 | 7.4:+28798422 | None:intergenic |
| GGAAACGGGCGGGGCCTTTG+CGG | 0.417226 | 7.4:+28798557 | None:intergenic |
| TTACAAATCACAGCACCTTC+AGG | 0.419108 | 7.4:+28798301 | None:intergenic |
| GCCTTTGCGGTGATGTGTGT+GGG | 0.435541 | 7.4:+28798570 | None:intergenic |
| GCTGCTGAGGGTTTGTATAC+CGG | 0.439273 | 7.4:-28798391 | MS.gene52229:CDS |
| ACCAGCAACTTGCCCAATCA+TGG | 0.440792 | 7.4:+28797405 | None:intergenic |
| CGAGGGAACGGAAACGGGCG+GGG | 0.441434 | 7.4:+28798548 | None:intergenic |
| AACTGAGAAGCCAATGTTGA+AGG | 0.451466 | 7.4:-28797374 | MS.gene52229:CDS |
| CGTCGGTGACGACTCCTTTG+AGG | 0.452604 | 7.4:+28798503 | None:intergenic |
| GGAGGTAATCACCAACATAT+TGG | 0.453068 | 7.4:-28797259 | MS.gene52229:CDS |
| TCGAGGGAACGGAAACGGGC+GGG | 0.454887 | 7.4:+28798547 | None:intergenic |
| CTCATTGCTGCCAAGAGGAC+TGG | 0.455821 | 7.4:-28797187 | MS.gene52229:CDS |
| GTCAGACGTGATGCTCCTCC+TGG | 0.456100 | 7.4:-28797223 | MS.gene52229:CDS |
| CGAAGTCGAGGGAACGGAAA+CGG | 0.463299 | 7.4:+28798542 | None:intergenic |
| GCATTACCGGCCTTCAACAT+TGG | 0.473847 | 7.4:+28797364 | None:intergenic |
| GCAAGAGGAGCACCGCGACC+TGG | 0.474064 | 7.4:+28798469 | None:intergenic |
| TACAGGATCAAGCTTCCATC+TGG | 0.475040 | 7.4:-28797460 | MS.gene52229:intron |
| AGATTGTGCCAAGTGACTGC+AGG | 0.475752 | 7.4:-28797429 | MS.gene52229:CDS |
| CCTCTTAGATCTATTCCTGA+AGG | 0.484222 | 7.4:-28798316 | MS.gene52229:CDS |
| AACTGTTGGCCTAAGGTTCG+TGG | 0.487779 | 7.4:-28797316 | MS.gene52229:CDS |
| TGTCATCCGTGCCCAACGTA+AGG | 0.492175 | 7.4:-28798614 | MS.gene52229:CDS |
| CGTTTCCGTTCCCTCGACTT+CGG | 0.496555 | 7.4:-28798541 | MS.gene52229:CDS |
| GTGACTGCAGGGCCATGATT+GGG | 0.501153 | 7.4:-28797417 | MS.gene52229:CDS |
| GGCCTTTGCGGTGATGTGTG+TGG | 0.508332 | 7.4:+28798569 | None:intergenic |
| GCTCCTCCTGGACAGAAGGT+TGG | 0.508354 | 7.4:-28797211 | MS.gene52229:CDS |
| GGAACCTGCTCCCTTACGTT+GGG | 0.510705 | 7.4:+28798603 | None:intergenic |
| CGTGCCCAACGTAAGGGAGC+AGG | 0.512987 | 7.4:-28798607 | MS.gene52229:CDS |
| TCCTCTTCACTCTGAACTTG+TGG | 0.513229 | 7.4:+28797338 | None:intergenic |
| CCTAAGACGACCAGTCCTCT+TGG | 0.514272 | 7.4:+28797177 | None:intergenic |
| ATTGGGCAAGTTGCTGGTGG+TGG | 0.517875 | 7.4:-28797400 | MS.gene52229:CDS |
| ATGAGACCAACCTTCTGTCC+AGG | 0.521573 | 7.4:+28797205 | None:intergenic |
| ATCATGGCCCTGCAGTCACT+TGG | 0.530422 | 7.4:+28797421 | None:intergenic |
| TGCTGTGATTTGTAATGTTG+AGG | 0.534385 | 7.4:-28798293 | MS.gene52229:CDS |
| ACCGACGTCATCCACGATCC+AGG | 0.536026 | 7.4:-28798487 | MS.gene52229:CDS |
| AGCATCACGTCTGACAGTAC+TGG | 0.537912 | 7.4:+28797231 | None:intergenic |
| TTGGTGATTACCTCCTCCGT+GGG | 0.541006 | 7.4:+28797267 | None:intergenic |
| GTTGAGCATCCCCACGGAGG+AGG | 0.543276 | 7.4:-28797277 | MS.gene52229:CDS |
| CGTTGCGTTCGCCGAAGTCG+AGG | 0.545445 | 7.4:+28798530 | None:intergenic |
| GAAGAGGAACTGTTGGCCTA+AGG | 0.546745 | 7.4:-28797323 | MS.gene52229:CDS |
| TGTAATGTTGAGGGTCATGT+TGG | 0.553570 | 7.4:-28798283 | MS.gene52229:CDS |
| GTCATCCACGATCCAGGTCG+CGG | 0.554431 | 7.4:-28798481 | MS.gene52229:CDS |
| TCGCGGTGCTCCTCTTGCTA+AGG | 0.557816 | 7.4:-28798464 | MS.gene52229:CDS |
| ATGATTGGGCAAGTTGCTGG+TGG | 0.561494 | 7.4:-28797403 | MS.gene52229:CDS |
| CTTCTGTTTCTGATAACGGA+AGG | 0.563357 | 7.4:+28798426 | None:intergenic |
| TGATGCTCCTCCTGGACAGA+AGG | 0.566122 | 7.4:-28797215 | MS.gene52229:CDS |
| CGGAACCTGCTCCCTTACGT+TGG | 0.568166 | 7.4:+28798602 | None:intergenic |
| TCTGATAACGGAAGGGATGA+CGG | 0.568851 | 7.4:+28798434 | None:intergenic |
| GCTGTGATTTGTAATGTTGA+GGG | 0.572615 | 7.4:-28798292 | MS.gene52229:CDS |
| TTCTGTTTCTGATAACGGAA+GGG | 0.573577 | 7.4:+28798427 | None:intergenic |
| GAGCACCGCGACCTGGATCG+TGG | 0.573801 | 7.4:+28798476 | None:intergenic |
| ACCTAGAGGTATCATTATCA+GGG | 0.574597 | 7.4:+28798203 | None:intergenic |
| GAACGCAACGGTTACCTCAA+AGG | 0.574638 | 7.4:-28798517 | MS.gene52229:CDS |
| GTCGAGGGAACGGAAACGGG+CGG | 0.575776 | 7.4:+28798546 | None:intergenic |
| GTTCGCCGAAGTCGAGGGAA+CGG | 0.578749 | 7.4:+28798536 | None:intergenic |
| CTGCTCCCTTACGTTGGGCA+CGG | 0.579845 | 7.4:+28798608 | None:intergenic |
| GAGAAGCCAATGTTGAAGGC+CGG | 0.581735 | 7.4:-28797370 | MS.gene52229:CDS |
| TCAGAGTGAAGAGGAACTGT+TGG | 0.582492 | 7.4:-28797330 | MS.gene52229:CDS |
| GTCATCCGTGCCCAACGTAA+GGG | 0.585900 | 7.4:-28798613 | MS.gene52229:CDS |
| ATGTGTGTGGGATTTGAAAA+CGG | 0.586676 | 7.4:+28798582 | None:intergenic |
| CCTTCAGGAATAGATCTAAG+AGG | 0.588316 | 7.4:+28798316 | None:intergenic |
| ACCGCAGTAAATAAACTGAC+CGG | 0.589138 | 7.4:+28798372 | None:intergenic |
| ATAGCAACACCACGAACCTT+AGG | 0.594313 | 7.4:+28797307 | None:intergenic |
| ACCGGTCAGTTTATTTACTG+CGG | 0.597635 | 7.4:-28798373 | MS.gene52229:CDS |
| ACAATCTTCTTGGCACCAGA+TGG | 0.597976 | 7.4:+28797445 | None:intergenic |
| GATTGTGCCAAGTGACTGCA+GGG | 0.598947 | 7.4:-28797428 | MS.gene52229:CDS |
| CTCGACTTCGGCGAACGCAA+CGG | 0.608500 | 7.4:-28798529 | MS.gene52229:CDS |
| GTTGCGTTCGCCGAAGTCGA+GGG | 0.613842 | 7.4:+28798531 | None:intergenic |
| AAGAGGACTGGTCGTCTTAG+GGG | 0.622786 | 7.4:-28797175 | MS.gene52229:CDS |
| CGGAAAGTCACCTTAGCAAG+AGG | 0.624941 | 7.4:+28798454 | None:intergenic |
| TCCCACACACATCACCGCAA+AGG | 0.627541 | 7.4:-28798571 | MS.gene52229:CDS |
| GTTGGTGATTACCTCCTCCG+TGG | 0.630355 | 7.4:+28797266 | None:intergenic |
| ACCCTGATAATGATACCTCT+AGG | 0.641117 | 7.4:-28798204 | MS.gene52229:intron |
| TTGGTCTCATTGCTGCCAAG+AGG | 0.653221 | 7.4:-28797192 | MS.gene52229:CDS |
| TACTGGCATGACCAATATGT+TGG | 0.654768 | 7.4:+28797248 | None:intergenic |
| ACCACAAGTTCAGAGTGAAG+AGG | 0.655234 | 7.4:-28797339 | MS.gene52229:CDS |
| AATCCTGTTGAGCATCCCCA+CGG | 0.655918 | 7.4:-28797283 | MS.gene52229:CDS |
| CTTCCGTTATCAGAAACAGA+AGG | 0.665450 | 7.4:-28798425 | MS.gene52229:CDS |
| GAGGGTCATGTTGGTGACCG+TGG | 0.688077 | 7.4:-28798274 | MS.gene52229:CDS |
| ACCTGGATCGTGGATGACGT+CGG | 0.688793 | 7.4:+28798486 | None:intergenic |
| AGACCAACCTTCTGTCCAGG+AGG | 0.695738 | 7.4:+28797208 | None:intergenic |
| CCTGTTGAGCATCCCCACGG+AGG | 0.744930 | 7.4:-28797280 | MS.gene52229:CDS |
| TGGTGATTACCTCCTCCGTG+GGG | 0.779827 | 7.4:+28797268 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCGATTAATATTAATTTA+AGG | - | chr7.4:28798178-28798197 | MS.gene52229:intron | 10.0% |
| !!! | AATATAACACTTTTTTATTA+GGG | - | chr7.4:28798214-28798233 | MS.gene52229:CDS | 10.0% |
| !!! | TCATTATTTGATTATATTTT+TGG | - | chr7.4:28797808-28797827 | MS.gene52229:intron | 10.0% |
| !!! | TTAAAAATTTATACCTTTTT+TGG | - | chr7.4:28798082-28798101 | MS.gene52229:intron | 10.0% |
| !! | TTATTTGATGTTATTCTTAA+TGG | - | chr7.4:28797627-28797646 | MS.gene52229:intron | 15.0% |
| !!! | AAATTTTTAATCAGATTGTA+AGG | + | chr7.4:28798072-28798091 | None:intergenic | 15.0% |
| !!! | CAATATAACACTTTTTTATT+AGG | - | chr7.4:28798213-28798232 | MS.gene52229:CDS | 15.0% |
| !!! | GTTTGATTATATTATGATTT+TGG | - | chr7.4:28797651-28797670 | MS.gene52229:intron | 15.0% |
| !!! | TATCATTTAAAATCCAAAAA+AGG | + | chr7.4:28798098-28798117 | None:intergenic | 15.0% |
| !!! | TATGATTTTGGAATTAATTT+TGG | - | chr7.4:28797663-28797682 | MS.gene52229:intron | 15.0% |
| !!! | TTATATTTTTGGATTGATTT+TGG | - | chr7.4:28797819-28797838 | MS.gene52229:intron | 15.0% |
| !! | AAATTTGAGTAGTAAATTCA+TGG | - | chr7.4:28797961-28797980 | MS.gene52229:intron | 20.0% |
| !! | AAGAATAAAAATATACCTAG+AGG | + | chr7.4:28797574-28797593 | None:intergenic | 20.0% |
| !!! | AAAATACTCTGAAAACTAAT+TGG | + | chr7.4:28798126-28798145 | None:intergenic | 20.0% |
| !!! | GTATTTTTAGTAGATTGAAT+TGG | - | chr7.4:28797841-28797860 | MS.gene52229:intron | 20.0% |
| !!! | TTAATTTTGGTATTTATGAG+TGG | - | chr7.4:28797676-28797695 | MS.gene52229:intron | 20.0% |
| ! | AGATTGAATTGGAATTGAAT+GGG | - | chr7.4:28797852-28797871 | MS.gene52229:intron | 25.0% |
| ! | CTAGCACAATATAAACAAAT+CGG | + | chr7.4:28798016-28798035 | None:intergenic | 25.0% |
| ! | TAGATTGAATTGGAATTGAA+TGG | - | chr7.4:28797851-28797870 | MS.gene52229:intron | 25.0% |
| ! | TAGCACAATATAAACAAATC+GGG | + | chr7.4:28798015-28798034 | None:intergenic | 25.0% |
| ! | TGATTTCAATGCAGAAAATT+GGG | - | chr7.4:28798041-28798060 | MS.gene52229:intron | 25.0% |
| ! | TTGATTTCAATGCAGAAAAT+TGG | - | chr7.4:28798040-28798059 | MS.gene52229:intron | 25.0% |
| ! | TTTAGGTGTATACTTGATTT+AGG | - | chr7.4:28798250-28798269 | MS.gene52229:CDS | 25.0% |
| !! | GAATTGATGTTTGTGTTTTT+GGG | - | chr7.4:28797775-28797794 | MS.gene52229:intron | 25.0% |
| !! | TGAATTGATGTTTGTGTTTT+TGG | - | chr7.4:28797774-28797793 | MS.gene52229:intron | 25.0% |
| !!! | AGGGTTTTGTTTGATTATTT+AGG | - | chr7.4:28798233-28798252 | MS.gene52229:CDS | 25.0% |
| !!! | CAAATTTGATTTGTTTAAGC+TGG | - | chr7.4:28797891-28797910 | MS.gene52229:intron | 25.0% |
| TAGGAGAGTAATGTTGAAAT+GGG | - | chr7.4:28798269-28798288 | MS.gene52229:CDS | 30.0% | |
| TTAGGAGAGTAATGTTGAAA+TGG | - | chr7.4:28798268-28798287 | MS.gene52229:CDS | 30.0% | |
| !!! | ATGTTTGTGTTTTTGGGTTA+TGG | - | chr7.4:28797781-28797800 | MS.gene52229:intron | 30.0% |
| !!! | TGAAATGGGTTTTGTTATAC+AGG | - | chr7.4:28798283-28798302 | MS.gene52229:CDS | 30.0% |
| ATCGGGTTCAAAATTCATCT+TGG | + | chr7.4:28797998-28798017 | None:intergenic | 35.0% | |
| ATGTGTGTGGGATTTGAAAA+CGG | + | chr7.4:28797181-28797200 | None:intergenic | 35.0% | |
| TGAAGTGAAGTCATGGATAT+AGG | - | chr7.4:28798153-28798172 | MS.gene52229:intron | 35.0% | |
| ! | AAAAAAGCGACTCTTGTTGT+TGG | - | chr7.4:28797411-28797430 | MS.gene52229:CDS | 35.0% |
| ! | GCTGTGATTTGTAATGTTGA+GGG | - | chr7.4:28797468-28797487 | MS.gene52229:intron | 35.0% |
| ! | TGCTGTGATTTGTAATGTTG+AGG | - | chr7.4:28797467-28797486 | MS.gene52229:intron | 35.0% |
| !! | ACCTAGAGGTATCATTATCA+GGG | + | chr7.4:28797560-28797579 | None:intergenic | 35.0% |
| !! | TACCTAGAGGTATCATTATC+AGG | + | chr7.4:28797561-28797580 | None:intergenic | 35.0% |
| !! | TTCTGTTTCTGATAACGGAA+GGG | + | chr7.4:28797336-28797355 | None:intergenic | 35.0% |
| AACTGAGAAGCCAATGTTGA+AGG | - | chr7.4:28798386-28798405 | MS.gene52229:CDS | 40.0% | |
| ACCGCAGTAAATAAACTGAC+CGG | + | chr7.4:28797391-28797410 | None:intergenic | 40.0% | |
| ACCGGTCAGTTTATTTACTG+CGG | - | chr7.4:28797387-28797406 | MS.gene52229:CDS | 40.0% | |
| CCTCTTAGATCTATTCCTGA+AGG | - | chr7.4:28797444-28797463 | MS.gene52229:CDS | 40.0% | |
| CCTTCAGGAATAGATCTAAG+AGG | + | chr7.4:28797447-28797466 | None:intergenic | 40.0% | |
| CTTCCGTTATCAGAAACAGA+AGG | - | chr7.4:28797335-28797354 | MS.gene52229:CDS | 40.0% | |
| GAACTTGTGGTAAGCATTAC+CGG | + | chr7.4:28798412-28798431 | None:intergenic | 40.0% | |
| GGAGGTAATCACCAACATAT+TGG | - | chr7.4:28798501-28798520 | MS.gene52229:CDS | 40.0% | |
| TACTGGCATGACCAATATGT+TGG | + | chr7.4:28798515-28798534 | None:intergenic | 40.0% | |
| TCATGACTGAAGTGAAGTCA+TGG | - | chr7.4:28798146-28798165 | MS.gene52229:intron | 40.0% | |
| TGTAATGTTGAGGGTCATGT+TGG | - | chr7.4:28797477-28797496 | MS.gene52229:intron | 40.0% | |
| TTACAAATCACAGCACCTTC+AGG | + | chr7.4:28797462-28797481 | None:intergenic | 40.0% | |
| ! | AAGCTCTAGCAAAAACACCA+CGG | + | chr7.4:28797506-28797525 | None:intergenic | 40.0% |
| ! | ACCCTGATAATGATACCTCT+AGG | - | chr7.4:28797556-28797575 | MS.gene52229:intron | 40.0% |
| !! | CTTCTGTTTCTGATAACGGA+AGG | + | chr7.4:28797337-28797356 | None:intergenic | 40.0% |
| !! | GCTCCTTCTGTTTCTGATAA+CGG | + | chr7.4:28797341-28797360 | None:intergenic | 40.0% |
| ACAATCTTCTTGGCACCAGA+TGG | + | chr7.4:28798318-28798337 | None:intergenic | 45.0% | |
| ACCACAAGTTCAGAGTGAAG+AGG | - | chr7.4:28798421-28798440 | MS.gene52229:CDS | 45.0% | |
| ATAGCAACACCACGAACCTT+AGG | + | chr7.4:28798456-28798475 | None:intergenic | 45.0% | |
| GTCACTTGGCACAATCTTCT+TGG | + | chr7.4:28798328-28798347 | None:intergenic | 45.0% | |
| TACAGGATCAAGCTTCCATC+TGG | - | chr7.4:28798300-28798319 | MS.gene52229:CDS | 45.0% | |
| TCAGAGTGAAGAGGAACTGT+TGG | - | chr7.4:28798430-28798449 | MS.gene52229:CDS | 45.0% | |
| TCCTCTTCACTCTGAACTTG+TGG | + | chr7.4:28798425-28798444 | None:intergenic | 45.0% | |
| !! | GGTGTTTTTGCTAGAGCTTC+TGG | - | chr7.4:28797507-28797526 | MS.gene52229:intron | 45.0% |
| !! | TCTGATAACGGAAGGGATGA+CGG | + | chr7.4:28797329-28797348 | None:intergenic | 45.0% |
| AATCCTGTTGAGCATCCCCA+CGG | - | chr7.4:28798477-28798496 | MS.gene52229:CDS | 50.0% | |
| ACCAGCAACTTGCCCAATCA+TGG | + | chr7.4:28798358-28798377 | None:intergenic | 50.0% | |
| AGATTGTGCCAAGTGACTGC+AGG | - | chr7.4:28798331-28798350 | MS.gene52229:CDS | 50.0% | |
| AGCATCACGTCTGACAGTAC+TGG | + | chr7.4:28798532-28798551 | None:intergenic | 50.0% | |
| ATGAGACCAACCTTCTGTCC+AGG | + | chr7.4:28798558-28798577 | None:intergenic | 50.0% | |
| ATGATTGGGCAAGTTGCTGG+TGG | - | chr7.4:28798357-28798376 | MS.gene52229:CDS | 50.0% | |
| CGGAAAGTCACCTTAGCAAG+AGG | + | chr7.4:28797309-28797328 | None:intergenic | 50.0% | |
| GAACGCAACGGTTACCTCAA+AGG | - | chr7.4:28797243-28797262 | MS.gene52229:CDS | 50.0% | |
| GAGAAGCCAATGTTGAAGGC+CGG | - | chr7.4:28798390-28798409 | MS.gene52229:CDS | 50.0% | |
| GATTGTGCCAAGTGACTGCA+GGG | - | chr7.4:28798332-28798351 | MS.gene52229:CDS | 50.0% | |
| GCATTACCGGCCTTCAACAT+TGG | + | chr7.4:28798399-28798418 | None:intergenic | 50.0% | |
| GCTGCTGAGGGTTTGTATAC+CGG | - | chr7.4:28797369-28797388 | MS.gene52229:CDS | 50.0% | |
| TTGGTCTCATTGCTGCCAAG+AGG | - | chr7.4:28798568-28798587 | MS.gene52229:CDS | 50.0% | |
| ! | AACTGTTGGCCTAAGGTTCG+TGG | - | chr7.4:28798444-28798463 | MS.gene52229:CDS | 50.0% |
| ! | GAAGAGGAACTGTTGGCCTA+AGG | - | chr7.4:28798437-28798456 | MS.gene52229:CDS | 50.0% |
| ! | GAGCTTTTCGTTGCTGCTGA+GGG | - | chr7.4:28797357-28797376 | MS.gene52229:CDS | 50.0% |
| ! | TTGGTGATTACCTCCTCCGT+GGG | + | chr7.4:28798496-28798515 | None:intergenic | 50.0% |
| !! | AAGAGGACTGGTCGTCTTAG+GGG | - | chr7.4:28798585-28798604 | MS.gene52229:CDS | 50.0% |
| !! | CAAGAGGACTGGTCGTCTTA+GGG | - | chr7.4:28798584-28798603 | MS.gene52229:CDS | 50.0% |
| ACCTGGATCGTGGATGACGT+CGG | + | chr7.4:28797277-28797296 | None:intergenic | 55.0% | |
| AGACCAACCTTCTGTCCAGG+AGG | + | chr7.4:28798555-28798574 | None:intergenic | 55.0% | |
| AGTGACTGCAGGGCCATGAT+TGG | - | chr7.4:28798342-28798361 | MS.gene52229:CDS | 55.0% | |
| ATCATGGCCCTGCAGTCACT+TGG | + | chr7.4:28798342-28798361 | None:intergenic | 55.0% | |
| ATTGGGCAAGTTGCTGGTGG+TGG | - | chr7.4:28798360-28798379 | MS.gene52229:CDS | 55.0% | |
| CCTAAGACGACCAGTCCTCT+TGG | + | chr7.4:28798586-28798605 | None:intergenic | 55.0% | |
| CGAAGTCGAGGGAACGGAAA+CGG | + | chr7.4:28797221-28797240 | None:intergenic | 55.0% | |
| CGTTTCCGTTCCCTCGACTT+CGG | - | chr7.4:28797219-28797238 | MS.gene52229:CDS | 55.0% | |
| CTCATTGCTGCCAAGAGGAC+TGG | - | chr7.4:28798573-28798592 | MS.gene52229:CDS | 55.0% | |
| GAAGTCGAGGGAACGGAAAC+GGG | + | chr7.4:28797220-28797239 | None:intergenic | 55.0% | |
| GCCATGATTGGGCAAGTTGC+TGG | - | chr7.4:28798354-28798373 | MS.gene52229:CDS | 55.0% | |
| GCCTTTGCGGTGATGTGTGT+GGG | + | chr7.4:28797193-28797212 | None:intergenic | 55.0% | |
| GGAACCTGCTCCCTTACGTT+GGG | + | chr7.4:28797160-28797179 | None:intergenic | 55.0% | |
| GTCATCCGTGCCCAACGTAA+GGG | - | chr7.4:28797147-28797166 | MS.gene52229:CDS | 55.0% | |
| GTGACTGCAGGGCCATGATT+GGG | - | chr7.4:28798343-28798362 | MS.gene52229:CDS | 55.0% | |
| TCCCACACACATCACCGCAA+AGG | - | chr7.4:28797189-28797208 | MS.gene52229:CDS | 55.0% | |
| TGATGCTCCTCCTGGACAGA+AGG | - | chr7.4:28798545-28798564 | MS.gene52229:CDS | 55.0% | |
| TGGTGATTACCTCCTCCGTG+GGG | + | chr7.4:28798495-28798514 | None:intergenic | 55.0% | |
| TGTCATCCGTGCCCAACGTA+AGG | - | chr7.4:28797146-28797165 | MS.gene52229:CDS | 55.0% | |
| ! | GGAGCTTTTCGTTGCTGCTG+AGG | - | chr7.4:28797356-28797375 | MS.gene52229:CDS | 55.0% |
| !! | CCAAGAGGACTGGTCGTCTT+AGG | - | chr7.4:28798583-28798602 | MS.gene52229:CDS | 55.0% |
| !! | GTTGGTGATTACCTCCTCCG+TGG | + | chr7.4:28798497-28798516 | None:intergenic | 55.0% |
| ACCGACGTCATCCACGATCC+AGG | - | chr7.4:28797273-28797292 | MS.gene52229:CDS | 60.0% | |
| CGGAACCTGCTCCCTTACGT+TGG | + | chr7.4:28797161-28797180 | None:intergenic | 60.0% | |
| CGTCGGTGACGACTCCTTTG+AGG | + | chr7.4:28797260-28797279 | None:intergenic | 60.0% | |
| CTCGACTTCGGCGAACGCAA+CGG | - | chr7.4:28797231-28797250 | MS.gene52229:CDS | 60.0% | |
| CTGCTCCCTTACGTTGGGCA+CGG | + | chr7.4:28797155-28797174 | None:intergenic | 60.0% | |
| GCTCCTCCTGGACAGAAGGT+TGG | - | chr7.4:28798549-28798568 | MS.gene52229:CDS | 60.0% | |
| GGCCTTTGCGGTGATGTGTG+TGG | + | chr7.4:28797194-28797213 | None:intergenic | 60.0% | |
| GTCAGACGTGATGCTCCTCC+TGG | - | chr7.4:28798537-28798556 | MS.gene52229:CDS | 60.0% | |
| GTCATCCACGATCCAGGTCG+CGG | - | chr7.4:28797279-28797298 | MS.gene52229:CDS | 60.0% | |
| GTTCGCCGAAGTCGAGGGAA+CGG | + | chr7.4:28797227-28797246 | None:intergenic | 60.0% | |
| GTTGCGTTCGCCGAAGTCGA+GGG | + | chr7.4:28797232-28797251 | None:intergenic | 60.0% | |
| TCGCGGTGCTCCTCTTGCTA+AGG | - | chr7.4:28797296-28797315 | MS.gene52229:CDS | 60.0% | |
| !! | GAGGGTCATGTTGGTGACCG+TGG | - | chr7.4:28797486-28797505 | MS.gene52229:intron | 60.0% |
| CCTCCGTGGGGATGCTCAAC+AGG | + | chr7.4:28798483-28798502 | None:intergenic | 65.0% | |
| CCTGTTGAGCATCCCCACGG+AGG | - | chr7.4:28798480-28798499 | MS.gene52229:CDS | 65.0% | |
| CGTGCCCAACGTAAGGGAGC+AGG | - | chr7.4:28797153-28797172 | MS.gene52229:CDS | 65.0% | |
| CGTTGCGTTCGCCGAAGTCG+AGG | + | chr7.4:28797233-28797252 | None:intergenic | 65.0% | |
| GTCGAGGGAACGGAAACGGG+CGG | + | chr7.4:28797217-28797236 | None:intergenic | 65.0% | |
| GTTGAGCATCCCCACGGAGG+AGG | - | chr7.4:28798483-28798502 | MS.gene52229:CDS | 65.0% | |
| TCGAGGGAACGGAAACGGGC+GGG | + | chr7.4:28797216-28797235 | None:intergenic | 65.0% | |
| CGAGGGAACGGAAACGGGCG+GGG | + | chr7.4:28797215-28797234 | None:intergenic | 70.0% | |
| GGAAACGGGCGGGGCCTTTG+CGG | + | chr7.4:28797206-28797225 | None:intergenic | 70.0% | |
| ! | GAGCACCGCGACCTGGATCG+TGG | + | chr7.4:28797287-28797306 | None:intergenic | 70.0% |
| !! | GCAAGAGGAGCACCGCGACC+TGG | + | chr7.4:28797294-28797313 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 28797138 | 28798644 | 28797138 | ID=MS.gene52229 |
| chr7.4 | mRNA | 28797138 | 28798644 | 28797138 | ID=MS.gene52229.t1;Parent=MS.gene52229 |
| chr7.4 | exon | 28798205 | 28798644 | 28798205 | ID=MS.gene52229.t1.exon1;Parent=MS.gene52229.t1 |
| chr7.4 | CDS | 28798205 | 28798644 | 28798205 | ID=cds.MS.gene52229.t1;Parent=MS.gene52229.t1 |
| chr7.4 | exon | 28797138 | 28797477 | 28797138 | ID=MS.gene52229.t1.exon2;Parent=MS.gene52229.t1 |
| chr7.4 | CDS | 28797138 | 28797477 | 28797138 | ID=cds.MS.gene52229.t1;Parent=MS.gene52229.t1 |
| Gene Sequence |
| Protein sequence |
