AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52229


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52229.t1 MTR_7g076940 100.000 259 0 0 1 259 1 259 0.0 528
MS.gene52229.t1 MTR_5g021800 95.736 258 11 0 1 258 1 258 0.0 508
MS.gene52229.t1 MTR_2g015360 41.026 117 63 3 98 214 51 161 7.67e-19 82.0
MS.gene52229.t1 MTR_3g035710 40.741 108 57 3 107 214 1 101 3.18e-16 73.9
MS.gene52229.t1 MTR_0002s0800 39.048 105 49 3 115 215 3 96 7.39e-14 68.9
MS.gene52229.t1 MTR_0002s0360 39.048 105 49 3 115 215 3 96 7.39e-14 68.9
MS.gene52229.t1 MTR_3g037420 38.144 97 53 3 119 215 8 97 2.20e-11 60.5
MS.gene52229.t1 MTR_4g051430 25.592 211 100 5 29 214 163 341 7.19e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52229.t1 AT4G36130 93.023 258 18 0 1 258 1 258 0.0 498
MS.gene52229.t1 AT2G18020 92.636 258 19 0 1 258 1 258 4.00e-175 483
MS.gene52229.t1 AT3G51190 84.519 239 36 1 1 238 1 239 3.45e-153 427
MS.gene52229.t1 ATCG00830 32.632 190 108 4 29 214 60 233 1.46e-25 102
MS.gene52229.t1 ATCG01310 32.632 190 108 4 29 214 60 233 1.46e-25 102
MS.gene52229.t1 AT2G44065 36.691 139 80 3 97 234 58 189 9.27e-17 77.0
MS.gene52229.t1 AT2G44065 36.691 139 80 3 97 234 58 189 9.27e-17 77.0
MS.gene52229.t1 AT2G44065 36.691 139 80 3 97 234 58 189 9.27e-17 77.0

Find 92 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTAGAGGTATCATTATC+AGG 0.241334 7.4:+28798202 None:intergenic
CCAAGAGGACTGGTCGTCTT+AGG 0.241658 7.4:-28797177 MS.gene52229:CDS
AATCTAAACTGCTTATTTAT+CGG 0.245431 7.4:+28797126 None:intergenic
GTCACTTGGCACAATCTTCT+TGG 0.305373 7.4:+28797435 None:intergenic
GAACTTGTGGTAAGCATTAC+CGG 0.310318 7.4:+28797351 None:intergenic
CCTCCGTGGGGATGCTCAAC+AGG 0.334759 7.4:+28797280 None:intergenic
GCCATGATTGGGCAAGTTGC+TGG 0.355007 7.4:-28797406 MS.gene52229:CDS
GAAGTCGAGGGAACGGAAAC+GGG 0.358567 7.4:+28798543 None:intergenic
CAAGAGGACTGGTCGTCTTA+GGG 0.368154 7.4:-28797176 MS.gene52229:CDS
AGTGACTGCAGGGCCATGAT+TGG 0.371357 7.4:-28797418 MS.gene52229:CDS
GCTCCTTCTGTTTCTGATAA+CGG 0.408848 7.4:+28798422 None:intergenic
GGAAACGGGCGGGGCCTTTG+CGG 0.417226 7.4:+28798557 None:intergenic
TTACAAATCACAGCACCTTC+AGG 0.419108 7.4:+28798301 None:intergenic
GCCTTTGCGGTGATGTGTGT+GGG 0.435541 7.4:+28798570 None:intergenic
GCTGCTGAGGGTTTGTATAC+CGG 0.439273 7.4:-28798391 MS.gene52229:CDS
ACCAGCAACTTGCCCAATCA+TGG 0.440792 7.4:+28797405 None:intergenic
CGAGGGAACGGAAACGGGCG+GGG 0.441434 7.4:+28798548 None:intergenic
AACTGAGAAGCCAATGTTGA+AGG 0.451466 7.4:-28797374 MS.gene52229:CDS
CGTCGGTGACGACTCCTTTG+AGG 0.452604 7.4:+28798503 None:intergenic
GGAGGTAATCACCAACATAT+TGG 0.453068 7.4:-28797259 MS.gene52229:CDS
TCGAGGGAACGGAAACGGGC+GGG 0.454887 7.4:+28798547 None:intergenic
CTCATTGCTGCCAAGAGGAC+TGG 0.455821 7.4:-28797187 MS.gene52229:CDS
GTCAGACGTGATGCTCCTCC+TGG 0.456100 7.4:-28797223 MS.gene52229:CDS
CGAAGTCGAGGGAACGGAAA+CGG 0.463299 7.4:+28798542 None:intergenic
GCATTACCGGCCTTCAACAT+TGG 0.473847 7.4:+28797364 None:intergenic
GCAAGAGGAGCACCGCGACC+TGG 0.474064 7.4:+28798469 None:intergenic
TACAGGATCAAGCTTCCATC+TGG 0.475040 7.4:-28797460 MS.gene52229:intron
AGATTGTGCCAAGTGACTGC+AGG 0.475752 7.4:-28797429 MS.gene52229:CDS
CCTCTTAGATCTATTCCTGA+AGG 0.484222 7.4:-28798316 MS.gene52229:CDS
AACTGTTGGCCTAAGGTTCG+TGG 0.487779 7.4:-28797316 MS.gene52229:CDS
TGTCATCCGTGCCCAACGTA+AGG 0.492175 7.4:-28798614 MS.gene52229:CDS
CGTTTCCGTTCCCTCGACTT+CGG 0.496555 7.4:-28798541 MS.gene52229:CDS
GTGACTGCAGGGCCATGATT+GGG 0.501153 7.4:-28797417 MS.gene52229:CDS
GGCCTTTGCGGTGATGTGTG+TGG 0.508332 7.4:+28798569 None:intergenic
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 7.4:-28797211 MS.gene52229:CDS
GGAACCTGCTCCCTTACGTT+GGG 0.510705 7.4:+28798603 None:intergenic
CGTGCCCAACGTAAGGGAGC+AGG 0.512987 7.4:-28798607 MS.gene52229:CDS
TCCTCTTCACTCTGAACTTG+TGG 0.513229 7.4:+28797338 None:intergenic
CCTAAGACGACCAGTCCTCT+TGG 0.514272 7.4:+28797177 None:intergenic
ATTGGGCAAGTTGCTGGTGG+TGG 0.517875 7.4:-28797400 MS.gene52229:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 7.4:+28797205 None:intergenic
ATCATGGCCCTGCAGTCACT+TGG 0.530422 7.4:+28797421 None:intergenic
TGCTGTGATTTGTAATGTTG+AGG 0.534385 7.4:-28798293 MS.gene52229:CDS
ACCGACGTCATCCACGATCC+AGG 0.536026 7.4:-28798487 MS.gene52229:CDS
AGCATCACGTCTGACAGTAC+TGG 0.537912 7.4:+28797231 None:intergenic
TTGGTGATTACCTCCTCCGT+GGG 0.541006 7.4:+28797267 None:intergenic
GTTGAGCATCCCCACGGAGG+AGG 0.543276 7.4:-28797277 MS.gene52229:CDS
CGTTGCGTTCGCCGAAGTCG+AGG 0.545445 7.4:+28798530 None:intergenic
GAAGAGGAACTGTTGGCCTA+AGG 0.546745 7.4:-28797323 MS.gene52229:CDS
TGTAATGTTGAGGGTCATGT+TGG 0.553570 7.4:-28798283 MS.gene52229:CDS
GTCATCCACGATCCAGGTCG+CGG 0.554431 7.4:-28798481 MS.gene52229:CDS
TCGCGGTGCTCCTCTTGCTA+AGG 0.557816 7.4:-28798464 MS.gene52229:CDS
ATGATTGGGCAAGTTGCTGG+TGG 0.561494 7.4:-28797403 MS.gene52229:CDS
CTTCTGTTTCTGATAACGGA+AGG 0.563357 7.4:+28798426 None:intergenic
TGATGCTCCTCCTGGACAGA+AGG 0.566122 7.4:-28797215 MS.gene52229:CDS
CGGAACCTGCTCCCTTACGT+TGG 0.568166 7.4:+28798602 None:intergenic
TCTGATAACGGAAGGGATGA+CGG 0.568851 7.4:+28798434 None:intergenic
GCTGTGATTTGTAATGTTGA+GGG 0.572615 7.4:-28798292 MS.gene52229:CDS
TTCTGTTTCTGATAACGGAA+GGG 0.573577 7.4:+28798427 None:intergenic
GAGCACCGCGACCTGGATCG+TGG 0.573801 7.4:+28798476 None:intergenic
ACCTAGAGGTATCATTATCA+GGG 0.574597 7.4:+28798203 None:intergenic
GAACGCAACGGTTACCTCAA+AGG 0.574638 7.4:-28798517 MS.gene52229:CDS
GTCGAGGGAACGGAAACGGG+CGG 0.575776 7.4:+28798546 None:intergenic
GTTCGCCGAAGTCGAGGGAA+CGG 0.578749 7.4:+28798536 None:intergenic
CTGCTCCCTTACGTTGGGCA+CGG 0.579845 7.4:+28798608 None:intergenic
GAGAAGCCAATGTTGAAGGC+CGG 0.581735 7.4:-28797370 MS.gene52229:CDS
TCAGAGTGAAGAGGAACTGT+TGG 0.582492 7.4:-28797330 MS.gene52229:CDS
GTCATCCGTGCCCAACGTAA+GGG 0.585900 7.4:-28798613 MS.gene52229:CDS
ATGTGTGTGGGATTTGAAAA+CGG 0.586676 7.4:+28798582 None:intergenic
CCTTCAGGAATAGATCTAAG+AGG 0.588316 7.4:+28798316 None:intergenic
ACCGCAGTAAATAAACTGAC+CGG 0.589138 7.4:+28798372 None:intergenic
ATAGCAACACCACGAACCTT+AGG 0.594313 7.4:+28797307 None:intergenic
ACCGGTCAGTTTATTTACTG+CGG 0.597635 7.4:-28798373 MS.gene52229:CDS
ACAATCTTCTTGGCACCAGA+TGG 0.597976 7.4:+28797445 None:intergenic
GATTGTGCCAAGTGACTGCA+GGG 0.598947 7.4:-28797428 MS.gene52229:CDS
CTCGACTTCGGCGAACGCAA+CGG 0.608500 7.4:-28798529 MS.gene52229:CDS
GTTGCGTTCGCCGAAGTCGA+GGG 0.613842 7.4:+28798531 None:intergenic
AAGAGGACTGGTCGTCTTAG+GGG 0.622786 7.4:-28797175 MS.gene52229:CDS
CGGAAAGTCACCTTAGCAAG+AGG 0.624941 7.4:+28798454 None:intergenic
TCCCACACACATCACCGCAA+AGG 0.627541 7.4:-28798571 MS.gene52229:CDS
GTTGGTGATTACCTCCTCCG+TGG 0.630355 7.4:+28797266 None:intergenic
ACCCTGATAATGATACCTCT+AGG 0.641117 7.4:-28798204 MS.gene52229:intron
TTGGTCTCATTGCTGCCAAG+AGG 0.653221 7.4:-28797192 MS.gene52229:CDS
TACTGGCATGACCAATATGT+TGG 0.654768 7.4:+28797248 None:intergenic
ACCACAAGTTCAGAGTGAAG+AGG 0.655234 7.4:-28797339 MS.gene52229:CDS
AATCCTGTTGAGCATCCCCA+CGG 0.655918 7.4:-28797283 MS.gene52229:CDS
CTTCCGTTATCAGAAACAGA+AGG 0.665450 7.4:-28798425 MS.gene52229:CDS
GAGGGTCATGTTGGTGACCG+TGG 0.688077 7.4:-28798274 MS.gene52229:CDS
ACCTGGATCGTGGATGACGT+CGG 0.688793 7.4:+28798486 None:intergenic
AGACCAACCTTCTGTCCAGG+AGG 0.695738 7.4:+28797208 None:intergenic
CCTGTTGAGCATCCCCACGG+AGG 0.744930 7.4:-28797280 MS.gene52229:CDS
TGGTGATTACCTCCTCCGTG+GGG 0.779827 7.4:+28797268 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCGATTAATATTAATTTA+AGG - chr7.4:28798178-28798197 MS.gene52229:intron 10.0%
!!! AATATAACACTTTTTTATTA+GGG - chr7.4:28798214-28798233 MS.gene52229:CDS 10.0%
!!! TCATTATTTGATTATATTTT+TGG - chr7.4:28797808-28797827 MS.gene52229:intron 10.0%
!!! TTAAAAATTTATACCTTTTT+TGG - chr7.4:28798082-28798101 MS.gene52229:intron 10.0%
!! TTATTTGATGTTATTCTTAA+TGG - chr7.4:28797627-28797646 MS.gene52229:intron 15.0%
!!! AAATTTTTAATCAGATTGTA+AGG + chr7.4:28798072-28798091 None:intergenic 15.0%
!!! CAATATAACACTTTTTTATT+AGG - chr7.4:28798213-28798232 MS.gene52229:CDS 15.0%
!!! GTTTGATTATATTATGATTT+TGG - chr7.4:28797651-28797670 MS.gene52229:intron 15.0%
!!! TATCATTTAAAATCCAAAAA+AGG + chr7.4:28798098-28798117 None:intergenic 15.0%
!!! TATGATTTTGGAATTAATTT+TGG - chr7.4:28797663-28797682 MS.gene52229:intron 15.0%
!!! TTATATTTTTGGATTGATTT+TGG - chr7.4:28797819-28797838 MS.gene52229:intron 15.0%
!! AAATTTGAGTAGTAAATTCA+TGG - chr7.4:28797961-28797980 MS.gene52229:intron 20.0%
!! AAGAATAAAAATATACCTAG+AGG + chr7.4:28797574-28797593 None:intergenic 20.0%
!!! AAAATACTCTGAAAACTAAT+TGG + chr7.4:28798126-28798145 None:intergenic 20.0%
!!! GTATTTTTAGTAGATTGAAT+TGG - chr7.4:28797841-28797860 MS.gene52229:intron 20.0%
!!! TTAATTTTGGTATTTATGAG+TGG - chr7.4:28797676-28797695 MS.gene52229:intron 20.0%
! AGATTGAATTGGAATTGAAT+GGG - chr7.4:28797852-28797871 MS.gene52229:intron 25.0%
! CTAGCACAATATAAACAAAT+CGG + chr7.4:28798016-28798035 None:intergenic 25.0%
! TAGATTGAATTGGAATTGAA+TGG - chr7.4:28797851-28797870 MS.gene52229:intron 25.0%
! TAGCACAATATAAACAAATC+GGG + chr7.4:28798015-28798034 None:intergenic 25.0%
! TGATTTCAATGCAGAAAATT+GGG - chr7.4:28798041-28798060 MS.gene52229:intron 25.0%
! TTGATTTCAATGCAGAAAAT+TGG - chr7.4:28798040-28798059 MS.gene52229:intron 25.0%
! TTTAGGTGTATACTTGATTT+AGG - chr7.4:28798250-28798269 MS.gene52229:CDS 25.0%
!! GAATTGATGTTTGTGTTTTT+GGG - chr7.4:28797775-28797794 MS.gene52229:intron 25.0%
!! TGAATTGATGTTTGTGTTTT+TGG - chr7.4:28797774-28797793 MS.gene52229:intron 25.0%
!!! AGGGTTTTGTTTGATTATTT+AGG - chr7.4:28798233-28798252 MS.gene52229:CDS 25.0%
!!! CAAATTTGATTTGTTTAAGC+TGG - chr7.4:28797891-28797910 MS.gene52229:intron 25.0%
TAGGAGAGTAATGTTGAAAT+GGG - chr7.4:28798269-28798288 MS.gene52229:CDS 30.0%
TTAGGAGAGTAATGTTGAAA+TGG - chr7.4:28798268-28798287 MS.gene52229:CDS 30.0%
!!! ATGTTTGTGTTTTTGGGTTA+TGG - chr7.4:28797781-28797800 MS.gene52229:intron 30.0%
!!! TGAAATGGGTTTTGTTATAC+AGG - chr7.4:28798283-28798302 MS.gene52229:CDS 30.0%
ATCGGGTTCAAAATTCATCT+TGG + chr7.4:28797998-28798017 None:intergenic 35.0%
ATGTGTGTGGGATTTGAAAA+CGG + chr7.4:28797181-28797200 None:intergenic 35.0%
TGAAGTGAAGTCATGGATAT+AGG - chr7.4:28798153-28798172 MS.gene52229:intron 35.0%
! AAAAAAGCGACTCTTGTTGT+TGG - chr7.4:28797411-28797430 MS.gene52229:CDS 35.0%
! GCTGTGATTTGTAATGTTGA+GGG - chr7.4:28797468-28797487 MS.gene52229:intron 35.0%
! TGCTGTGATTTGTAATGTTG+AGG - chr7.4:28797467-28797486 MS.gene52229:intron 35.0%
!! ACCTAGAGGTATCATTATCA+GGG + chr7.4:28797560-28797579 None:intergenic 35.0%
!! TACCTAGAGGTATCATTATC+AGG + chr7.4:28797561-28797580 None:intergenic 35.0%
!! TTCTGTTTCTGATAACGGAA+GGG + chr7.4:28797336-28797355 None:intergenic 35.0%
AACTGAGAAGCCAATGTTGA+AGG - chr7.4:28798386-28798405 MS.gene52229:CDS 40.0%
ACCGCAGTAAATAAACTGAC+CGG + chr7.4:28797391-28797410 None:intergenic 40.0%
ACCGGTCAGTTTATTTACTG+CGG - chr7.4:28797387-28797406 MS.gene52229:CDS 40.0%
CCTCTTAGATCTATTCCTGA+AGG - chr7.4:28797444-28797463 MS.gene52229:CDS 40.0%
CCTTCAGGAATAGATCTAAG+AGG + chr7.4:28797447-28797466 None:intergenic 40.0%
CTTCCGTTATCAGAAACAGA+AGG - chr7.4:28797335-28797354 MS.gene52229:CDS 40.0%
GAACTTGTGGTAAGCATTAC+CGG + chr7.4:28798412-28798431 None:intergenic 40.0%
GGAGGTAATCACCAACATAT+TGG - chr7.4:28798501-28798520 MS.gene52229:CDS 40.0%
TACTGGCATGACCAATATGT+TGG + chr7.4:28798515-28798534 None:intergenic 40.0%
TCATGACTGAAGTGAAGTCA+TGG - chr7.4:28798146-28798165 MS.gene52229:intron 40.0%
TGTAATGTTGAGGGTCATGT+TGG - chr7.4:28797477-28797496 MS.gene52229:intron 40.0%
TTACAAATCACAGCACCTTC+AGG + chr7.4:28797462-28797481 None:intergenic 40.0%
! AAGCTCTAGCAAAAACACCA+CGG + chr7.4:28797506-28797525 None:intergenic 40.0%
! ACCCTGATAATGATACCTCT+AGG - chr7.4:28797556-28797575 MS.gene52229:intron 40.0%
!! CTTCTGTTTCTGATAACGGA+AGG + chr7.4:28797337-28797356 None:intergenic 40.0%
!! GCTCCTTCTGTTTCTGATAA+CGG + chr7.4:28797341-28797360 None:intergenic 40.0%
ACAATCTTCTTGGCACCAGA+TGG + chr7.4:28798318-28798337 None:intergenic 45.0%
ACCACAAGTTCAGAGTGAAG+AGG - chr7.4:28798421-28798440 MS.gene52229:CDS 45.0%
ATAGCAACACCACGAACCTT+AGG + chr7.4:28798456-28798475 None:intergenic 45.0%
GTCACTTGGCACAATCTTCT+TGG + chr7.4:28798328-28798347 None:intergenic 45.0%
TACAGGATCAAGCTTCCATC+TGG - chr7.4:28798300-28798319 MS.gene52229:CDS 45.0%
TCAGAGTGAAGAGGAACTGT+TGG - chr7.4:28798430-28798449 MS.gene52229:CDS 45.0%
TCCTCTTCACTCTGAACTTG+TGG + chr7.4:28798425-28798444 None:intergenic 45.0%
!! GGTGTTTTTGCTAGAGCTTC+TGG - chr7.4:28797507-28797526 MS.gene52229:intron 45.0%
!! TCTGATAACGGAAGGGATGA+CGG + chr7.4:28797329-28797348 None:intergenic 45.0%
AATCCTGTTGAGCATCCCCA+CGG - chr7.4:28798477-28798496 MS.gene52229:CDS 50.0%
ACCAGCAACTTGCCCAATCA+TGG + chr7.4:28798358-28798377 None:intergenic 50.0%
AGATTGTGCCAAGTGACTGC+AGG - chr7.4:28798331-28798350 MS.gene52229:CDS 50.0%
AGCATCACGTCTGACAGTAC+TGG + chr7.4:28798532-28798551 None:intergenic 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr7.4:28798558-28798577 None:intergenic 50.0%
ATGATTGGGCAAGTTGCTGG+TGG - chr7.4:28798357-28798376 MS.gene52229:CDS 50.0%
CGGAAAGTCACCTTAGCAAG+AGG + chr7.4:28797309-28797328 None:intergenic 50.0%
GAACGCAACGGTTACCTCAA+AGG - chr7.4:28797243-28797262 MS.gene52229:CDS 50.0%
GAGAAGCCAATGTTGAAGGC+CGG - chr7.4:28798390-28798409 MS.gene52229:CDS 50.0%
GATTGTGCCAAGTGACTGCA+GGG - chr7.4:28798332-28798351 MS.gene52229:CDS 50.0%
GCATTACCGGCCTTCAACAT+TGG + chr7.4:28798399-28798418 None:intergenic 50.0%
GCTGCTGAGGGTTTGTATAC+CGG - chr7.4:28797369-28797388 MS.gene52229:CDS 50.0%
TTGGTCTCATTGCTGCCAAG+AGG - chr7.4:28798568-28798587 MS.gene52229:CDS 50.0%
! AACTGTTGGCCTAAGGTTCG+TGG - chr7.4:28798444-28798463 MS.gene52229:CDS 50.0%
! GAAGAGGAACTGTTGGCCTA+AGG - chr7.4:28798437-28798456 MS.gene52229:CDS 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr7.4:28797357-28797376 MS.gene52229:CDS 50.0%
! TTGGTGATTACCTCCTCCGT+GGG + chr7.4:28798496-28798515 None:intergenic 50.0%
!! AAGAGGACTGGTCGTCTTAG+GGG - chr7.4:28798585-28798604 MS.gene52229:CDS 50.0%
!! CAAGAGGACTGGTCGTCTTA+GGG - chr7.4:28798584-28798603 MS.gene52229:CDS 50.0%
ACCTGGATCGTGGATGACGT+CGG + chr7.4:28797277-28797296 None:intergenic 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr7.4:28798555-28798574 None:intergenic 55.0%
AGTGACTGCAGGGCCATGAT+TGG - chr7.4:28798342-28798361 MS.gene52229:CDS 55.0%
ATCATGGCCCTGCAGTCACT+TGG + chr7.4:28798342-28798361 None:intergenic 55.0%
ATTGGGCAAGTTGCTGGTGG+TGG - chr7.4:28798360-28798379 MS.gene52229:CDS 55.0%
CCTAAGACGACCAGTCCTCT+TGG + chr7.4:28798586-28798605 None:intergenic 55.0%
CGAAGTCGAGGGAACGGAAA+CGG + chr7.4:28797221-28797240 None:intergenic 55.0%
CGTTTCCGTTCCCTCGACTT+CGG - chr7.4:28797219-28797238 MS.gene52229:CDS 55.0%
CTCATTGCTGCCAAGAGGAC+TGG - chr7.4:28798573-28798592 MS.gene52229:CDS 55.0%
GAAGTCGAGGGAACGGAAAC+GGG + chr7.4:28797220-28797239 None:intergenic 55.0%
GCCATGATTGGGCAAGTTGC+TGG - chr7.4:28798354-28798373 MS.gene52229:CDS 55.0%
GCCTTTGCGGTGATGTGTGT+GGG + chr7.4:28797193-28797212 None:intergenic 55.0%
GGAACCTGCTCCCTTACGTT+GGG + chr7.4:28797160-28797179 None:intergenic 55.0%
GTCATCCGTGCCCAACGTAA+GGG - chr7.4:28797147-28797166 MS.gene52229:CDS 55.0%
GTGACTGCAGGGCCATGATT+GGG - chr7.4:28798343-28798362 MS.gene52229:CDS 55.0%
TCCCACACACATCACCGCAA+AGG - chr7.4:28797189-28797208 MS.gene52229:CDS 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr7.4:28798545-28798564 MS.gene52229:CDS 55.0%
TGGTGATTACCTCCTCCGTG+GGG + chr7.4:28798495-28798514 None:intergenic 55.0%
TGTCATCCGTGCCCAACGTA+AGG - chr7.4:28797146-28797165 MS.gene52229:CDS 55.0%
! GGAGCTTTTCGTTGCTGCTG+AGG - chr7.4:28797356-28797375 MS.gene52229:CDS 55.0%
!! CCAAGAGGACTGGTCGTCTT+AGG - chr7.4:28798583-28798602 MS.gene52229:CDS 55.0%
!! GTTGGTGATTACCTCCTCCG+TGG + chr7.4:28798497-28798516 None:intergenic 55.0%
ACCGACGTCATCCACGATCC+AGG - chr7.4:28797273-28797292 MS.gene52229:CDS 60.0%
CGGAACCTGCTCCCTTACGT+TGG + chr7.4:28797161-28797180 None:intergenic 60.0%
CGTCGGTGACGACTCCTTTG+AGG + chr7.4:28797260-28797279 None:intergenic 60.0%
CTCGACTTCGGCGAACGCAA+CGG - chr7.4:28797231-28797250 MS.gene52229:CDS 60.0%
CTGCTCCCTTACGTTGGGCA+CGG + chr7.4:28797155-28797174 None:intergenic 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr7.4:28798549-28798568 MS.gene52229:CDS 60.0%
GGCCTTTGCGGTGATGTGTG+TGG + chr7.4:28797194-28797213 None:intergenic 60.0%
GTCAGACGTGATGCTCCTCC+TGG - chr7.4:28798537-28798556 MS.gene52229:CDS 60.0%
GTCATCCACGATCCAGGTCG+CGG - chr7.4:28797279-28797298 MS.gene52229:CDS 60.0%
GTTCGCCGAAGTCGAGGGAA+CGG + chr7.4:28797227-28797246 None:intergenic 60.0%
GTTGCGTTCGCCGAAGTCGA+GGG + chr7.4:28797232-28797251 None:intergenic 60.0%
TCGCGGTGCTCCTCTTGCTA+AGG - chr7.4:28797296-28797315 MS.gene52229:CDS 60.0%
!! GAGGGTCATGTTGGTGACCG+TGG - chr7.4:28797486-28797505 MS.gene52229:intron 60.0%
CCTCCGTGGGGATGCTCAAC+AGG + chr7.4:28798483-28798502 None:intergenic 65.0%
CCTGTTGAGCATCCCCACGG+AGG - chr7.4:28798480-28798499 MS.gene52229:CDS 65.0%
CGTGCCCAACGTAAGGGAGC+AGG - chr7.4:28797153-28797172 MS.gene52229:CDS 65.0%
CGTTGCGTTCGCCGAAGTCG+AGG + chr7.4:28797233-28797252 None:intergenic 65.0%
GTCGAGGGAACGGAAACGGG+CGG + chr7.4:28797217-28797236 None:intergenic 65.0%
GTTGAGCATCCCCACGGAGG+AGG - chr7.4:28798483-28798502 MS.gene52229:CDS 65.0%
TCGAGGGAACGGAAACGGGC+GGG + chr7.4:28797216-28797235 None:intergenic 65.0%
CGAGGGAACGGAAACGGGCG+GGG + chr7.4:28797215-28797234 None:intergenic 70.0%
GGAAACGGGCGGGGCCTTTG+CGG + chr7.4:28797206-28797225 None:intergenic 70.0%
! GAGCACCGCGACCTGGATCG+TGG + chr7.4:28797287-28797306 None:intergenic 70.0%
!! GCAAGAGGAGCACCGCGACC+TGG + chr7.4:28797294-28797313 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 28797138 28798644 28797138 ID=MS.gene52229
chr7.4 mRNA 28797138 28798644 28797138 ID=MS.gene52229.t1;Parent=MS.gene52229
chr7.4 exon 28798205 28798644 28798205 ID=MS.gene52229.t1.exon1;Parent=MS.gene52229.t1
chr7.4 CDS 28798205 28798644 28798205 ID=cds.MS.gene52229.t1;Parent=MS.gene52229.t1
chr7.4 exon 28797138 28797477 28797138 ID=MS.gene52229.t1.exon2;Parent=MS.gene52229.t1
chr7.4 CDS 28797138 28797477 28797138 ID=cds.MS.gene52229.t1;Parent=MS.gene52229.t1
Gene Sequence

>MS.gene52229

ATGGGTCGTGTCATCCGTGCCCAACGTAAGGGAGCAGGTTCCGTTTTCAAATCCCACACACATCACCGCAAAGGCCCCGCCCGTTTCCGTTCCCTCGACTTCGGCGAACGCAACGGTTACCTCAAAGGAGTCGTCACCGACGTCATCCACGATCCAGGTCGCGGTGCTCCTCTTGCTAAGGTGACTTTCCGTCATCCCTTCCGTTATCAGAAACAGAAGGAGCTTTTCGTTGCTGCTGAGGGTTTGTATACCGGTCAGTTTATTTACTGCGGTAAAAAAGCGACTCTTGTTGTTGGTAATGTTTTGCCTCTTAGATCTATTCCTGAAGGTGCTGTGATTTGTAATGTTGAGGGTCATGTTGGTGACCGTGGTGTTTTTGCTAGAGCTTCTGGTGATTATGCTATTGTTATCAGTCACAACCCTGATAATGATACCTCTAGGTATATTTTTATTCTTTCTTTTTGTTTAATTTGTTGATTATTGATATAATTATTTGATGTTATTCTTAATGGCGTTTGATTATATTATGATTTTGGAATTAATTTTGGTATTTATGAGTGGATTTTAACTTTCAATAGAAATGTTTGATCAGATTTGTTTGATTTTGTAATTCTAGTAATTTTGAAATTGATAAAATGAATTGATGTTTGTGTTTTTGGGTTATGGAGAATCATTATTTGATTATATTTTTGGATTGATTTTGGTATTTTTAGTAGATTGAATTGGAATTGAATGGGTTGATCTGATTTGATACAAATTTGATTTGTTTAAGCTGGATTAGTTTTTAAAAACTATGTTGTAACGTTTAATTTAAAAAAAAATGAAATTTGAGTAGTAAATTCATGGATTTCATGTTGCCAAGATGAATTTTGAACCCGATTTGTTTATATTGTGCTAGTTGTTTGATTTCAATGCAGAAAATTGGGCTACACCTTACAATCTGATTAAAAATTTATACCTTTTTTGGATTTTAAATGATACTACTCCAATTAGTTTTCAGAGTATTTTTCATGACTGAAGTGAAGTCATGGATATAGGAATTTCGATTAATATTAATTTAAGGAAATGATATTATCAATATAACACTTTTTTATTAGGGTTTTGTTTGATTATTTAGGTGTATACTTGATTTAGGAGAGTAATGTTGAAATGGGTTTTGTTATACAGGATCAAGCTTCCATCTGGTGCCAAGAAGATTGTGCCAAGTGACTGCAGGGCCATGATTGGGCAAGTTGCTGGTGGTGGAAGAACTGAGAAGCCAATGTTGAAGGCCGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGTTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTTGAGCATCCCCACGGAGGAGGTAATCACCAACATATTGGTCATGCCAGTACTGTCAGACGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGTCAAGCTGCTGCAAGTGCTGCTAAAGCCGATAAATAA

Protein sequence

>MS.gene52229.t1

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYQKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAASAAKADK