AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010946

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010946.t1 MTR_3g056705 93.822 259 16 0 1 259 873 1131 3.24e-167 502
MS.gene010946.t1 MTR_5g094830 70.656 259 65 2 1 259 826 1073 2.56e-117 367
MS.gene010946.t1 MTR_5g033030 69.884 259 73 3 1 259 815 1068 2.28e-116 365
MS.gene010946.t1 MTR_5g094810 68.846 260 68 3 1 259 811 1058 1.43e-113 357
MS.gene010946.t1 MTR_5g033320 66.409 259 81 4 1 259 806 1058 1.51e-106 338
MS.gene010946.t1 MTR_3g056700 53.668 259 119 1 1 259 626 883 1.41e-88 287
MS.gene010946.t1 MTR_3g056645 54.054 259 118 1 1 259 1 258 1.45e-87 276
MS.gene010946.t1 MTR_3g056675 53.668 259 119 1 1 259 573 830 4.18e-85 277
MS.gene010946.t1 MTR_1g069450 45.421 273 131 3 1 259 839 1107 3.27e-65 221
MS.gene010946.t1 MTR_7g098690 42.545 275 140 3 1 259 819 1091 1.47e-63 216
MS.gene010946.t1 MTR_8g080050 38.462 260 137 4 1 259 784 1021 5.39e-48 171
MS.gene010946.t1 MTR_8g015970 35.496 262 156 4 1 261 616 865 5.60e-42 154
MS.gene010946.t1 MTR_8g015970 35.496 262 156 4 1 261 620 869 6.22e-42 154
MS.gene010946.t1 MTR_8g015970 35.496 262 156 4 1 261 620 869 6.46e-42 154
MS.gene010946.t1 MTR_8g015970 35.496 262 156 4 1 261 616 865 7.52e-42 153
MS.gene010946.t1 MTR_8g040170 34.091 264 157 4 1 261 605 854 6.58e-40 148
MS.gene010946.t1 MTR_8g040170 34.091 264 157 4 1 261 445 694 7.96e-40 147
MS.gene010946.t1 MTR_6g084320 32.950 261 151 4 1 261 783 1019 3.49e-39 145
MS.gene010946.t1 MTR_6g084320 32.567 261 152 3 1 261 783 1019 5.56e-39 145
MS.gene010946.t1 MTR_2g436710 33.457 269 165 5 1 267 837 1093 9.05e-39 144
MS.gene010946.t1 MTR_1g088680 34.894 235 137 4 1 231 846 1068 1.52e-38 144
MS.gene010946.t1 MTR_8g015980 33.333 264 148 4 1 261 792 1030 1.11e-37 141
MS.gene010946.t1 MTR_8g040620 34.100 261 153 3 1 261 795 1036 2.19e-37 140
MS.gene010946.t1 MTR_8g061970 32.234 273 175 4 1 272 832 1095 8.71e-37 139
MS.gene010946.t1 MTR_8g016070 34.831 267 149 5 1 263 802 1047 2.13e-36 137
MS.gene010946.t1 MTR_6g034270 31.274 259 155 3 1 259 634 869 3.67e-36 137
MS.gene010946.t1 MTR_6g034335 32.103 271 161 6 1 270 821 1069 1.47e-35 135
MS.gene010946.t1 MTR_8g016020 33.208 265 148 5 1 261 574 813 5.24e-35 134
MS.gene010946.t1 MTR_2g436730 31.387 274 165 5 1 267 835 1092 1.92e-34 132
MS.gene010946.t1 MTR_6g034265 31.250 272 161 5 1 270 815 1062 4.78e-34 131
MS.gene010946.t1 MTR_1g099280 31.734 271 164 5 1 270 815 1065 4.83e-34 131
MS.gene010946.t1 MTR_6g034230 30.651 261 158 4 1 261 817 1054 4.97e-34 131
MS.gene010946.t1 MTR_1g099280 30.258 271 168 4 1 270 815 1065 5.47e-34 130
MS.gene010946.t1 MTR_1g099280 30.258 271 168 4 1 270 840 1090 5.54e-34 130
MS.gene010946.t1 MTR_0196s0020 29.502 261 161 4 1 261 817 1054 7.01e-34 130
MS.gene010946.t1 MTR_6g034755 30.258 271 166 4 1 270 824 1072 1.37e-32 127
MS.gene010946.t1 MTR_2g436680 31.343 268 169 4 1 267 837 1090 1.57e-32 126
MS.gene010946.t1 MTR_6g034220 32.721 272 157 6 1 270 816 1063 1.70e-32 126
MS.gene010946.t1 MTR_6g034310 30.627 271 161 6 1 270 445 689 6.18e-32 125
MS.gene010946.t1 MTR_6g034310 30.627 271 161 6 1 270 803 1047 1.09e-31 124
MS.gene010946.t1 MTR_6g034310 30.627 271 161 6 1 270 803 1047 1.16e-31 124
MS.gene010946.t1 MTR_0019s0020 29.771 262 159 3 1 261 767 1004 2.68e-31 123
MS.gene010946.t1 MTR_0019s0020 29.771 262 159 3 1 261 767 1004 2.81e-31 123
MS.gene010946.t1 MTR_0019s0020 29.771 262 159 3 1 261 767 1004 2.91e-31 123
MS.gene010946.t1 MTR_0019s0020 31.939 263 152 5 1 261 767 1004 3.39e-31 122
MS.gene010946.t1 MTR_0019s0020 29.771 262 159 3 1 261 767 1004 3.79e-31 122
MS.gene010946.t1 MTR_8g042520 29.889 271 163 6 1 270 14 258 4.81e-31 122
MS.gene010946.t1 MTR_6g034350 28.413 271 171 4 1 270 824 1072 5.37e-29 116
MS.gene010946.t1 MTR_8g016010 31.674 221 132 4 1 217 147 352 4.68e-27 110
MS.gene010946.t1 MTR_2g105190 29.500 200 125 5 67 259 870 1060 1.65e-17 82.8
MS.gene010946.t1 MTR_2g105190 29.500 200 125 5 67 259 864 1054 1.65e-17 82.8
MS.gene010946.t1 MTR_3g011840 29.130 230 143 6 1 229 735 945 4.48e-17 81.6
MS.gene010946.t1 MTR_2g019020 30.392 204 123 8 63 251 618 817 4.93e-15 75.5
MS.gene010946.t1 MTR_2g019020 30.392 204 123 8 63 251 672 871 5.39e-15 75.5
MS.gene010946.t1 MTR_2g019020 30.693 202 121 8 65 251 857 1054 5.74e-15 75.5
MS.gene010946.t1 MTR_2g019020 30.392 204 123 8 63 251 400 599 5.76e-15 75.5
MS.gene010946.t1 MTR_3g011820 27.391 230 148 6 1 229 851 1062 6.20e-15 75.1
MS.gene010946.t1 MTR_2g019020 30.693 202 121 8 65 251 857 1054 6.57e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010946.t1 AT3G13080 59.073 259 104 2 1 259 836 1092 4.32e-103 324
MS.gene010946.t1 AT3G13080 59.073 259 104 2 1 259 836 1092 4.32e-103 324
MS.gene010946.t1 AT3G13080 59.073 259 104 2 1 259 836 1092 1.34e-101 324
MS.gene010946.t1 AT3G13080 59.073 259 104 2 1 259 836 1092 1.57e-101 324
MS.gene010946.t1 AT3G13080 59.073 259 104 2 1 259 836 1092 2.34e-101 323
MS.gene010946.t1 AT3G13100 58.687 259 93 3 1 259 575 819 1.10e-91 295
MS.gene010946.t1 AT3G13100 58.687 259 93 3 1 259 820 1064 3.40e-91 295
MS.gene010946.t1 AT3G13090 56.154 260 99 4 1 259 797 1042 3.21e-89 289
MS.gene010946.t1 AT1G71330 58.537 205 83 2 1 205 108 310 5.65e-81 247
MS.gene010946.t1 AT1G04120 44.203 276 135 4 1 259 818 1091 3.11e-63 215
MS.gene010946.t1 AT1G04120 44.203 276 135 4 1 259 783 1056 3.13e-63 215
MS.gene010946.t1 AT1G04120 44.203 276 135 4 1 259 818 1091 3.70e-63 215
MS.gene010946.t1 AT3G60160 42.023 257 143 2 1 257 826 1076 5.01e-60 206
MS.gene010946.t1 AT3G60160 42.023 257 143 2 1 257 790 1040 5.17e-60 206
MS.gene010946.t1 AT3G60160 42.023 257 143 2 1 257 826 1076 5.71e-60 206
MS.gene010946.t1 AT3G60970 40.467 257 110 3 1 257 410 623 2.50e-52 184
MS.gene010946.t1 AT2G47800 33.813 278 165 5 1 267 837 1106 2.49e-40 149
MS.gene010946.t1 AT3G62700 32.997 297 167 5 1 267 835 1129 2.30e-39 146
MS.gene010946.t1 AT3G59140 30.627 271 161 4 1 270 798 1042 9.94e-35 133
MS.gene010946.t1 AT3G21250 30.292 274 143 4 1 257 800 1042 8.15e-33 127
MS.gene010946.t1 AT3G21250 30.292 274 143 4 1 257 789 1031 8.37e-33 127
MS.gene010946.t1 AT3G21250 30.292 274 143 4 1 257 783 1025 8.69e-33 127
MS.gene010946.t1 AT3G21250 30.292 274 143 4 1 257 794 1036 9.13e-33 127
MS.gene010946.t1 AT3G21250 30.292 274 143 4 1 257 378 620 9.22e-33 127
MS.gene010946.t1 AT3G21250 30.292 274 143 4 1 257 378 620 9.22e-33 127
MS.gene010946.t1 AT2G07680 30.102 196 136 1 58 253 794 988 1.74e-19 89.0
MS.gene010946.t1 AT2G07680 30.102 196 136 1 58 253 711 905 1.77e-19 88.6
MS.gene010946.t1 AT2G07680 30.102 196 136 1 58 253 810 1004 1.85e-19 88.6
MS.gene010946.t1 AT2G07680 30.102 196 136 1 58 253 810 1004 1.86e-19 88.6
MS.gene010946.t1 AT2G07680 30.102 196 136 1 58 253 785 979 2.10e-19 88.6
MS.gene010946.t1 AT2G07680 30.102 196 136 1 58 253 788 982 2.24e-19 88.6
MS.gene010946.t1 AT1G30400 24.906 265 164 6 1 254 811 1051 6.81e-16 78.2
MS.gene010946.t1 AT1G30400 24.906 265 164 6 1 254 811 1051 6.81e-16 78.2
MS.gene010946.t1 AT2G34660 24.715 263 172 9 1 254 524 769 3.88e-15 75.9
MS.gene010946.t1 AT2G34660 24.715 263 172 9 1 254 811 1056 4.55e-15 75.9
MS.gene010946.t1 AT2G34660 24.715 263 172 9 1 254 811 1056 4.55e-15 75.9
MS.gene010946.t1 AT1G30410 25.431 232 151 6 1 229 815 1027 8.79e-15 74.7
MS.gene010946.t1 AT1G30410 25.431 232 151 6 1 229 812 1024 8.83e-15 74.7
MS.gene010946.t1 AT1G30410 25.431 232 151 6 1 229 697 909 8.85e-15 74.7
MS.gene010946.t1 AT1G30410 25.431 232 151 6 1 229 812 1024 9.56e-15 74.7
MS.gene010946.t1 AT1G30410 25.431 232 151 6 1 229 812 1024 9.56e-15 74.7
MS.gene010946.t1 AT1G30410 25.431 232 151 6 1 229 812 1024 9.56e-15 74.7
MS.gene010946.t1 AT1G30420 24.255 235 150 6 1 229 812 1024 1.67e-14 73.9
MS.gene010946.t1 AT1G30420 24.255 235 150 6 1 229 812 1024 1.81e-14 73.9

Find 52 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTGGAAGCAACTAT+TGG 0.238628 7.1:-51580864 MS.gene010946:CDS
CAAGTGGAAGAATCCTTAAT+AGG 0.249695 7.1:-51580624 MS.gene010946:CDS
ATGTTTCAACTTCTTCAAAT+TGG 0.277828 7.1:-51580877 MS.gene010946:CDS
AATTCCAAGGAGATGGATTA+TGG 0.281754 7.1:+51579987 None:intergenic
TCTTGAACAAGTTGTCCTTT+TGG 0.301001 7.1:+51581003 None:intergenic
CAGATCCACATACCCTATTA+AGG 0.343404 7.1:+51580611 None:intergenic
GAAAGAGAGCAAGGTAAAGT+TGG 0.353443 7.1:-51580976 MS.gene010946:CDS
CCATCTCCTTGGAATTATAA+TGG 0.363927 7.1:-51579980 MS.gene010946:CDS
CTTGATTCATCAGATGGATA+TGG 0.375614 7.1:-51581147 MS.gene010946:CDS
AAGTGGAAGAATCCTTAATA+GGG 0.421076 7.1:-51580623 MS.gene010946:intron
AAAGAGAGCAAGGTAAAGTT+GGG 0.433227 7.1:-51580975 MS.gene010946:CDS
GATGTCTCAGGTTGCATGGC+AGG 0.438386 7.1:-51579956 MS.gene010946:CDS
CCTGTTGTGATGTACTTATC+TGG 0.444623 7.1:+51581112 None:intergenic
AAATATATCACGACAGCATA+TGG 0.450488 7.1:-51580937 MS.gene010946:CDS
CCATGTGTCTCTCTTCCTCT+AGG 0.454227 7.1:-51581087 MS.gene010946:CDS
GATATTGACGTGGAAAATTG+AGG 0.467095 7.1:-51579748 None:intergenic
CCAGATAAGTACATCACAAC+AGG 0.482922 7.1:-51581112 MS.gene010946:CDS
GCACATAATGCAGTTTGAAA+AGG 0.488904 7.1:+51580015 None:intergenic
CCATTATAATTCCAAGGAGA+TGG 0.493115 7.1:+51579980 None:intergenic
AATTATAATGGTGATGTCTC+AGG 0.495966 7.1:-51579968 MS.gene010946:CDS
AGGAGTGTAGTTCCTCGAAC+AGG 0.499646 7.1:+51580802 None:intergenic
TACTTGTATCCACTTCACTT+TGG 0.500826 7.1:+51580040 None:intergenic
TCTGCACTTGATTCATCAGA+TGG 0.505504 7.1:-51581153 MS.gene010946:CDS
CTATTAAGGATTCTTCCACT+TGG 0.507737 7.1:+51580625 None:intergenic
TGCTCCATAATCCATCTCCT+TGG 0.507949 7.1:-51579991 MS.gene010946:CDS
GCAACTCTTGTTGTCACCGC+TGG 0.508064 7.1:-51580727 MS.gene010946:CDS
AATTGGAAGCAACTATTGGA+TGG 0.509516 7.1:-51580860 MS.gene010946:CDS
CAACAAGAGTTGCTCTAGAT+AGG 0.511129 7.1:+51580737 None:intergenic
TCATTGCCGGGGCTATGGAA+TGG 0.513442 7.1:-51579930 MS.gene010946:CDS
GACACATAAAGAACTTCCTA+TGG 0.530280 7.1:+51580759 None:intergenic
GAGAAGAAAGAAGTACAGAA+TGG 0.536785 7.1:-51581048 MS.gene010946:CDS
TTCTACTGACCAAAGTGAAG+TGG 0.537663 7.1:-51580049 MS.gene010946:CDS
GATGTGGAGCCACCTGTTCG+AGG 0.554467 7.1:-51580814 MS.gene010946:CDS
CCACACCTACATAGACAACT+AGG 0.557019 7.1:+51580782 None:intergenic
AATGACGAGATTGAGCCAAA+AGG 0.564564 7.1:-51581018 MS.gene010946:CDS
AACTCCCATCTCAAAAGATG+TGG 0.570549 7.1:-51580830 MS.gene010946:CDS
CAAGAAGAAGAAAGAGAGCA+AGG 0.570892 7.1:-51580985 MS.gene010946:CDS
AGACAACCATTCCATAGCCC+CGG 0.571388 7.1:+51579924 None:intergenic
CCTAGTTGTCTATGTAGGTG+TGG 0.574400 7.1:-51580782 MS.gene010946:CDS
ACACTCCTAGTTGTCTATGT+AGG 0.580169 7.1:-51580787 MS.gene010946:CDS
GATGGGGAAATTACTCAATG+TGG 0.583724 7.1:-51581246 MS.gene010946:CDS
AAGAAAGAAGTACAGAATGG+TGG 0.595879 7.1:-51581045 MS.gene010946:CDS
TATAATGATCTACTCAACTC+AGG 0.598290 7.1:-51581219 MS.gene010946:CDS
ACATCACCATTATAATTCCA+AGG 0.607280 7.1:+51579974 None:intergenic
GTCTATGTAGGTGTGGCCAT+AGG 0.623766 7.1:-51580775 MS.gene010946:CDS
AGTGTAGTTCCTCGAACAGG+TGG 0.627973 7.1:+51580805 None:intergenic
TGGTGATGTCTCAGGTTGCA+TGG 0.639152 7.1:-51579960 MS.gene010946:CDS
CCTAGAGGAAGAGAGACACA+TGG 0.640238 7.1:+51581087 None:intergenic
TTATAGATTGGATATTGACG+TGG 0.643870 7.1:-51579758 MS.gene010946:intron
ATTTCAGCTATCAATATGAG+TGG 0.654447 7.1:+51580901 None:intergenic
TATATCACGACAGCATATGG+AGG 0.683585 7.1:-51580934 MS.gene010946:CDS
AGTAGTTGTCTTATAACCAG+CGG 0.688846 7.1:+51580711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATATTTTACATCAT+AGG - chr7.1:51581171-51581190 MS.gene010946:CDS 10.0%
!!! AATATATATTTTACATCATA+GGG - chr7.1:51581172-51581191 MS.gene010946:CDS 10.0%
!!! ATATATATTTTACATCATAG+GGG - chr7.1:51581173-51581192 MS.gene010946:CDS 15.0%
!!! TTTTCTTATCATATATACAA+TGG + chr7.1:51580913-51580932 None:intergenic 15.0%
!!! TTTTGATTGAATATGTAAAT+TGG - chr7.1:51580439-51580458 MS.gene010946:intron 15.0%
!! ATATCAATGAAATGGTATAT+AGG - chr7.1:51580520-51580539 MS.gene010946:intron 20.0%
!! ATCTTGAAATTATAAAGTGT+CGG + chr7.1:51580714-51580733 None:intergenic 20.0%
!!! CTTATAATTTTATTGCGAAT+TGG + chr7.1:51580745-51580764 None:intergenic 20.0%
! AAGAAACATAATGAGTGAAT+AGG + chr7.1:51580809-51580828 None:intergenic 25.0%
! ATGTTTCAACTTCTTCAAAT+TGG - chr7.1:51580125-51580144 MS.gene010946:intron 25.0%
! CAATATCCAATCTATAAAAG+AGG + chr7.1:51581241-51581260 None:intergenic 25.0%
! GACCAATGTATAAAATTTCA+AGG + chr7.1:51580466-51580485 None:intergenic 25.0%
! GGCAAAAAATATCAATGAAA+TGG - chr7.1:51580512-51580531 MS.gene010946:intron 25.0%
! TAACGTTCAAAGTTAACAAA+AGG - chr7.1:51580678-51580697 MS.gene010946:CDS 25.0%
! TATCAAGAATAACAAGCAAA+AGG + chr7.1:51581138-51581157 None:intergenic 25.0%
! TTTGTTAACTTTGAACGTTA+GGG + chr7.1:51580678-51580697 None:intergenic 25.0%
!! ACGAATTTTATGGAACTTAT+TGG - chr7.1:51579807-51579826 MS.gene010946:intron 25.0%
!! GTCCTTGAAATTTTATACAT+TGG - chr7.1:51580461-51580480 MS.gene010946:intron 25.0%
!! TTTTATACATTGGTCAAAAC+AGG - chr7.1:51580471-51580490 MS.gene010946:intron 25.0%
!! TTTTGTTAACTTTGAACGTT+AGG + chr7.1:51580679-51580698 None:intergenic 25.0%
AAATATATCACGACAGCATA+TGG - chr7.1:51580065-51580084 MS.gene010946:intron 30.0%
AAGTGGAAGAATCCTTAATA+GGG - chr7.1:51580379-51580398 MS.gene010946:intron 30.0%
ACATCACCATTATAATTCCA+AGG + chr7.1:51581031-51581050 None:intergenic 30.0%
ATTTCAGCTATCAATATGAG+TGG + chr7.1:51580104-51580123 None:intergenic 30.0%
GTAGCATCAAAAAATGACAT+AGG + chr7.1:51580356-51580375 None:intergenic 30.0%
TATAATGATCTACTCAACTC+AGG - chr7.1:51579783-51579802 MS.gene010946:intron 30.0%
TTATAGATTGGATATTGACG+TGG - chr7.1:51581244-51581263 MS.gene010946:CDS 30.0%
TTCAAATTGGAAGCAACTAT+TGG - chr7.1:51580138-51580157 MS.gene010946:intron 30.0%
! AATTATAATGGTGATGTCTC+AGG - chr7.1:51581034-51581053 MS.gene010946:CDS 30.0%
! CATATGCCTCTTTTATAGAT+TGG - chr7.1:51581232-51581251 MS.gene010946:CDS 30.0%
AAAGAGAGCAAGGTAAAGTT+GGG - chr7.1:51580027-51580046 MS.gene010946:CDS 35.0%
AATTGGAAGCAACTATTGGA+TGG - chr7.1:51580142-51580161 MS.gene010946:intron 35.0%
AGAATCCTTAATAGGGTATG+TGG - chr7.1:51580386-51580405 MS.gene010946:intron 35.0%
AGTAGTTGTCTTATAACCAG+CGG + chr7.1:51580294-51580313 None:intergenic 35.0%
CAAGCAAAAGGCAAATGTAA+TGG + chr7.1:51581126-51581145 None:intergenic 35.0%
CAAGTGGAAGAATCCTTAAT+AGG - chr7.1:51580378-51580397 MS.gene010946:intron 35.0%
CCATCTCCTTGGAATTATAA+TGG - chr7.1:51581022-51581041 MS.gene010946:CDS 35.0%
CCATTATAATTCCAAGGAGA+TGG + chr7.1:51581025-51581044 None:intergenic 35.0%
CTATTAAGGATTCTTCCACT+TGG + chr7.1:51580380-51580399 None:intergenic 35.0%
CTTGATTCATCAGATGGATA+TGG - chr7.1:51579855-51579874 MS.gene010946:intron 35.0%
GACACATAAAGAACTTCCTA+TGG + chr7.1:51580246-51580265 None:intergenic 35.0%
GCACATAATGCAGTTTGAAA+AGG + chr7.1:51580990-51581009 None:intergenic 35.0%
TACTTGTATCCACTTCACTT+TGG + chr7.1:51580965-51580984 None:intergenic 35.0%
! AAGAAAGAAGTACAGAATGG+TGG - chr7.1:51579957-51579976 MS.gene010946:CDS 35.0%
! GAGAAGAAAGAAGTACAGAA+TGG - chr7.1:51579954-51579973 MS.gene010946:CDS 35.0%
! TCTATTTTGTCAACACCTAG+AGG + chr7.1:51579933-51579952 None:intergenic 35.0%
! TCTTGAACAAGTTGTCCTTT+TGG + chr7.1:51580002-51580021 None:intergenic 35.0%
!! AATTCCAAGGAGATGGATTA+TGG + chr7.1:51581018-51581037 None:intergenic 35.0%
!!! TTTTTTGATGCTACTCCAAG+TGG - chr7.1:51580362-51580381 MS.gene010946:intron 35.0%
AACTCCCATCTCAAAAGATG+TGG - chr7.1:51580172-51580191 MS.gene010946:intron 40.0%
AATGACGAGATTGAGCCAAA+AGG - chr7.1:51579984-51580003 MS.gene010946:CDS 40.0%
AATTTCCGCATTAGAGGCTA+TGG - chr7.1:51580565-51580584 MS.gene010946:intron 40.0%
ACACTCCTAGTTGTCTATGT+AGG - chr7.1:51580215-51580234 MS.gene010946:intron 40.0%
ATCCTCGAAACTGTAAGCAT+CGG + chr7.1:51580779-51580798 None:intergenic 40.0%
CAAGAAGAAGAAAGAGAGCA+AGG - chr7.1:51580017-51580036 MS.gene010946:CDS 40.0%
CAGATCCACATACCCTATTA+AGG + chr7.1:51580394-51580413 None:intergenic 40.0%
CCAGATAAGTACATCACAAC+AGG - chr7.1:51579890-51579909 MS.gene010946:intron 40.0%
CCTGTTGTGATGTACTTATC+TGG + chr7.1:51579893-51579912 None:intergenic 40.0%
CTTGTCTCAGAGATTGATGT+GGG + chr7.1:51580612-51580631 None:intergenic 40.0%
GAAAGAGAGCAAGGTAAAGT+TGG - chr7.1:51580026-51580045 MS.gene010946:CDS 40.0%
GATGGGGAAATTACTCAATG+TGG - chr7.1:51579756-51579775 MS.gene010946:intron 40.0%
TATATCACGACAGCATATGG+AGG - chr7.1:51580068-51580087 MS.gene010946:intron 40.0%
TCCATGAATTTCCGCATTAG+AGG - chr7.1:51580559-51580578 MS.gene010946:intron 40.0%
TCTAATGCGGAAATTCATGG+AGG + chr7.1:51580560-51580579 None:intergenic 40.0%
TCTGCACTTGATTCATCAGA+TGG - chr7.1:51579849-51579868 MS.gene010946:intron 40.0%
TTCTACTGACCAAAGTGAAG+TGG - chr7.1:51580953-51580972 MS.gene010946:CDS 40.0%
! AGGTTCTCAGTTTTGCGAAT+TGG - chr7.1:51580491-51580510 MS.gene010946:intron 40.0%
! CAACAAGAGTTGCTCTAGAT+AGG + chr7.1:51580268-51580287 None:intergenic 40.0%
! CAACTCAGGCACGAATTTTA+TGG - chr7.1:51579797-51579816 MS.gene010946:intron 40.0%
! GCAAGGTAAAGTTGGGTTTT+CGG - chr7.1:51580034-51580053 MS.gene010946:CDS 40.0%
!! CTCTGAGACAAGGTTAATAG+AGG - chr7.1:51580620-51580639 MS.gene010946:intron 40.0%
ACATGCCATAGCCTCTAATG+CGG + chr7.1:51580573-51580592 None:intergenic 45.0%
CCACACCTACATAGACAACT+AGG + chr7.1:51580223-51580242 None:intergenic 45.0%
CCTAGTTGTCTATGTAGGTG+TGG - chr7.1:51580220-51580239 MS.gene010946:intron 45.0%
CCTTGTCTCAGAGATTGATG+TGG + chr7.1:51580613-51580632 None:intergenic 45.0%
GAACGTTAGGGACTATGATG+TGG + chr7.1:51580666-51580685 None:intergenic 45.0%
GCCTCTAATGCGGAAATTCA+TGG + chr7.1:51580563-51580582 None:intergenic 45.0%
TACCGATGCTTACAGTTTCG+AGG - chr7.1:51580774-51580793 MS.gene010946:CDS 45.0%
TGCTCCATAATCCATCTCCT+TGG - chr7.1:51581011-51581030 MS.gene010946:CDS 45.0%
!! AAGTTGGGTTTTCGGTGTAC+TGG - chr7.1:51580042-51580061 MS.gene010946:CDS 45.0%
!! CCACATCAATCTCTGAGACA+AGG - chr7.1:51580610-51580629 MS.gene010946:intron 45.0%
!! TGGCTCCACATCTTTTGAGA+TGG + chr7.1:51580180-51580199 None:intergenic 45.0%
!!! GGCTCCACATCTTTTGAGAT+GGG + chr7.1:51580179-51580198 None:intergenic 45.0%
AGACAACCATTCCATAGCCC+CGG + chr7.1:51581081-51581100 None:intergenic 50.0%
AGTGTAGTTCCTCGAACAGG+TGG + chr7.1:51580200-51580219 None:intergenic 50.0%
CCATGTGTCTCTCTTCCTCT+AGG - chr7.1:51579915-51579934 MS.gene010946:CDS 50.0%
CCTAGAGGAAGAGAGACACA+TGG + chr7.1:51579918-51579937 None:intergenic 50.0%
GTCTATGTAGGTGTGGCCAT+AGG - chr7.1:51580227-51580246 MS.gene010946:intron 50.0%
! AGGAGTGTAGTTCCTCGAAC+AGG + chr7.1:51580203-51580222 None:intergenic 50.0%
! ATGGCAGGTTTTCATTGCCG+GGG - chr7.1:51581061-51581080 MS.gene010946:CDS 50.0%
! CATGGCAGGTTTTCATTGCC+GGG - chr7.1:51581060-51581079 MS.gene010946:CDS 50.0%
! GCATGGCAGGTTTTCATTGC+CGG - chr7.1:51581059-51581078 MS.gene010946:CDS 50.0%
! TGGTGATGTCTCAGGTTGCA+TGG - chr7.1:51581042-51581061 MS.gene010946:CDS 50.0%
TCATTGCCGGGGCTATGGAA+TGG - chr7.1:51581072-51581091 MS.gene010946:CDS 55.0%
! GATGTCTCAGGTTGCATGGC+AGG - chr7.1:51581046-51581065 MS.gene010946:CDS 55.0%
! GCAACTCTTGTTGTCACCGC+TGG - chr7.1:51580275-51580294 MS.gene010946:intron 55.0%
! GGTTTTCATTGCCGGGGCTA+TGG - chr7.1:51581067-51581086 MS.gene010946:CDS 55.0%
GATGTGGAGCCACCTGTTCG+AGG - chr7.1:51580188-51580207 MS.gene010946:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 51579750 51581274 51579750 ID=MS.gene010946
chr7.1 mRNA 51579750 51581274 51579750 ID=MS.gene010946.t1;Parent=MS.gene010946
chr7.1 exon 51580624 51581274 51580624 ID=MS.gene010946.t1.exon1;Parent=MS.gene010946.t1
chr7.1 CDS 51580624 51581274 51580624 ID=cds.MS.gene010946.t1;Parent=MS.gene010946.t1
chr7.1 exon 51579910 51580073 51579910 ID=MS.gene010946.t1.exon2;Parent=MS.gene010946.t1
chr7.1 CDS 51579910 51580073 51579910 ID=cds.MS.gene010946.t1;Parent=MS.gene010946.t1
chr7.1 exon 51579750 51579774 51579750 ID=MS.gene010946.t1.exon3;Parent=MS.gene010946.t1
chr7.1 CDS 51579750 51579774 51579750 ID=cds.MS.gene010946.t1;Parent=MS.gene010946.t1
Gene Sequence

>MS.gene010946

ATGAAAGATGGGGAAATTACTCAATGTGGAAAGTATAATGATCTACTCAACTCAGGCACGAATTTTATGGAACTTATTGGTGCTCATAGAGACGCATTGTCTGCACTTGATTCATCAGATGGATATGGTACAGTATCTGTCCAGATAAGTACATCACAACAGGATCCATGTGTCTCTCTTCCTCTAGGTGTTGACAAAATAGAAGAGAAGAAAGAAGTACAGAATGGTGGAACAAATGACGAGATTGAGCCAAAAGGACAACTTGTTCAAGAAGAAGAAAGAGAGCAAGGTAAAGTTGGGTTTTCGGTGTACTGGAAATATATCACGACAGCATATGGAGGTGCTCTTGTGCCACTCATATTGATAGCTGAAATCATGTTTCAACTTCTTCAAATTGGAAGCAACTATTGGATGGCTTCTTCAACTCCCATCTCAAAAGATGTGGAGCCACCTGTTCGAGGAACTACACTCCTAGTTGTCTATGTAGGTGTGGCCATAGGAAGTTCTTTATGTGTCCTATCTAGAGCAACTCTTGTTGTCACCGCTGGTTATAAGACAACTACTCTACTCGTCAACAAAATGCATCTCTGCATTTTTCGCGCTCCTATGTCATTTTTTGATGCTACTCCAAGTGGAAGAATCCTTAATAGGGTATGTGGATCTGTCTATATATCATTCTCTCTATCTTTTTTTGATTGAATATGTAAATTGGTCCTTGAAATTTTATACATTGGTCAAAACAGGTTCTCAGTTTTGCGAATTGGCAAAAAATATCAATGAAATGGTATATAGGCATTCAAAATAGCTCCTCCATGAATTTCCGCATTAGAGGCTATGGCATGTCACATTGTACGCTAATCCCACATCAATCTCTGAGACAAGGTTAATAGAGGTCACAACTTCAATTAACATACCACATCATAGTCCCTAACGTTCAAAGTTAACAAAAGGACTGTTTTCACCGACACTTTATAATTTCAAGATTGTATTTTCCAATTCGCAATAAAATTATAAGAATTATTTATACCGATGCTTACAGTTTCGAGGATCAATTTTCCTATTCACTCATTATGTTTCTTAATTTAGATGAATATACGAGTCTTAAATTATCTTTAGATCATTGATTTCTTAATAGTAATGTTCATCTTGCTAGTTTTTTTCCATTGTATATATGATAAGAAAATGTTTTGTTCTCTTGCAGACTTCTACTGACCAAAGTGAAGTGGATACAAGTATTCCTTTTCAAACTGCATTATGTGCTTGCTCCATAATCCATCTCCTTGGAATTATAATGGTGATGTCTCAGGTTGCATGGCAGGTTTTCATTGCCGGGGCTATGGAATGGTTGTCTTTTCGCTTAGATATGTTGTCTTCCATTACATTTGCCTTTTGCTTGTTATTCTTGATATCACACTACTACAAAATATATATTTTACATCATAGGGGTTTTAGTTTTAGTTTTCACACTAGCTATATTGTATTCATATGCCTCTTTTATAGATTGGATATTGACGTGGAAAATTGA
Protein sequence

>MS.gene010946.t1

MKDGEITQCGKYNDLLNSGTNFMELIGAHRDALSALDSSDGYGTVSVQISTSQQDPCVSLPLGVDKIEEKKEVQNGGTNDEIEPKGQLVQEEEREQGKVGFSVYWKYITTAYGGALVPLILIAEIMFQLLQIGSNYWMASSTPISKDVEPPVRGTTLLVVYVGVAIGSSLCVLSRATLVVTAGYKTTTLLVNKMHLCIFRAPMSFFDATPSGRILNRTSTDQSEVDTSIPFQTALCACSIIHLLGIIMVMSQVAWQVFIAGAMEWLSFRLDILDIDVEN