Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046213.t1 | XP_024635969.1 | 95.3 | 364 | 16 | 1 | 1 | 363 | 1 | 364 | 7.90E-161 | 576.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046213.t1 | Q84MZ4 | 39.6 | 389 | 182 | 4 | 14 | 350 | 15 | 402 | 1.5e-59 | 231.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046213.t1 | A0A2Z6M9M5 | 77.1 | 384 | 66 | 2 | 1 | 363 | 1 | 383 | 2.2e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene046213.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046213.t1 | MTR_8g039590 | 78.049 | 41 | 8 | 1 | 314 | 354 | 26 | 65 | 2.55e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046213.t1 | AT1G72050 | 54.242 | 389 | 125 | 3 | 14 | 350 | 30 | 417 | 8.56e-146 | 419 |
| MS.gene046213.t1 | AT1G72050 | 54.242 | 389 | 125 | 3 | 14 | 350 | 15 | 402 | 8.61e-146 | 419 |
| MS.gene046213.t1 | AT1G72050 | 53.503 | 314 | 94 | 2 | 88 | 350 | 2 | 314 | 2.52e-116 | 340 |
| MS.gene046213.t1 | AT1G72050 | 51.087 | 276 | 84 | 1 | 88 | 312 | 2 | 277 | 1.04e-96 | 290 |
Find 73 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.068375 | 3.3:-9170615 | None:intergenic |
| AATTGATGTGGGATGTAATT+AGG | 0.159176 | 3.3:-9170680 | None:intergenic |
| AGGATTTAACATGAGCTTTA+AGG | 0.225594 | 3.3:-9172353 | None:intergenic |
| ACCTTTCCACAGCCAATTTC+AGG | 0.226103 | 3.3:-9172111 | None:intergenic |
| TTCAAACCACCCTCTGATTC+AGG | 0.233682 | 3.3:-9171124 | None:intergenic |
| ATTGATGTGGGATGTAATTA+GGG | 0.319248 | 3.3:-9170679 | None:intergenic |
| AAATGCTTCGGAAGAATTGC+TGG | 0.348969 | 3.3:-9172457 | None:intergenic |
| AAGAAGCTGATGAAGAATTC+AGG | 0.351513 | 3.3:+9172859 | MS.gene046213:CDS |
| GCAAACCTCATCCCACAATT+AGG | 0.363573 | 3.3:-9172687 | None:intergenic |
| CAGTTTGTATGTCCTGAAAT+TGG | 0.397925 | 3.3:+9172099 | MS.gene046213:CDS |
| AAATTCACATTTAAATGCTT+CGG | 0.410138 | 3.3:-9172469 | None:intergenic |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 3.3:-9170647 | None:intergenic |
| GTGTGTGGGTTTCCTAATTG+TGG | 0.422735 | 3.3:+9172675 | MS.gene046213:CDS |
| AGAGAACTTGTTATTTGTGC+AGG | 0.423861 | 3.3:+9172968 | MS.gene046213:CDS |
| TTTCTCTTCACCCCTCCCCT+TGG | 0.432023 | 3.3:-9172888 | None:intergenic |
| AGCATTTAAATGTGAATTTG+AGG | 0.455222 | 3.3:+9172473 | MS.gene046213:CDS |
| ATGTAGCCTTGAAGATTGTA+AGG | 0.466096 | 3.3:+9171897 | MS.gene046213:CDS |
| TGTGTGGGTTTCCTAATTGT+GGG | 0.470341 | 3.3:+9172676 | MS.gene046213:CDS |
| ATGTGACCTGCGACACTTGT+GGG | 0.475355 | 3.3:+9172385 | MS.gene046213:CDS |
| CAGGTCAAGGCCAAGGGGAG+GGG | 0.490449 | 3.3:+9172878 | MS.gene046213:CDS |
| CCACAGTAGAAATGTTGGTC+AGG | 0.493714 | 3.3:+9172919 | MS.gene046213:CDS |
| AGCTCGCCTTACAATCTTCA+AGG | 0.496505 | 3.3:-9171903 | None:intergenic |
| CCTATCGAGAATTGCAAAAG+TGG | 0.504025 | 3.3:+9171988 | MS.gene046213:CDS |
| GCATTTAAATGTGAATTTGA+GGG | 0.510756 | 3.3:+9172474 | MS.gene046213:CDS |
| TCAGGTCAAGGCCAAGGGGA+GGG | 0.518065 | 3.3:+9172877 | MS.gene046213:CDS |
| TCTTCAAGGCTACATACAAA+TGG | 0.524961 | 3.3:-9171889 | None:intergenic |
| TGAAACTGAACCTGAATCAG+AGG | 0.525785 | 3.3:+9171114 | MS.gene046213:CDS |
| AACATGAGCTTTAAGGCACT+CGG | 0.529952 | 3.3:-9172346 | None:intergenic |
| CAAGTAAAGCCGTTTGTGTG+TGG | 0.530955 | 3.3:+9172660 | MS.gene046213:CDS |
| GGTTTCCTAATTGTGGGATG+AGG | 0.531394 | 3.3:+9172682 | MS.gene046213:CDS |
| GCTTTGGATTGATTCTTCCA+TGG | 0.534341 | 3.3:-9170583 | None:intergenic |
| CTTAGTCCCACAAGTGTCGC+AGG | 0.537296 | 3.3:-9172391 | None:intergenic |
| TGTCGCAGGTCACATATTGA+TGG | 0.542996 | 3.3:-9172377 | None:intergenic |
| AAGAATTCAGGTCAAGGCCA+AGG | 0.544513 | 3.3:+9172871 | MS.gene046213:CDS |
| AAGTAAAGCCGTTTGTGTGT+GGG | 0.550967 | 3.3:+9172661 | MS.gene046213:CDS |
| GTATGTCCTGAAATTGGCTG+TGG | 0.551180 | 3.3:+9172105 | MS.gene046213:CDS |
| TCCTCCCACAGTAGAAATGT+TGG | 0.554431 | 3.3:+9172914 | MS.gene046213:CDS |
| CGTCACCTTCTACAACATCA+AGG | 0.557665 | 3.3:+9171949 | MS.gene046213:CDS |
| TTAGGAAACCCACACACAAA+CGG | 0.558755 | 3.3:-9172669 | None:intergenic |
| AGTTCTCTAATTGACTAGGT+GGG | 0.566365 | 3.3:-9172953 | None:intergenic |
| CTGACCAACATTTCTACTGT+GGG | 0.568777 | 3.3:-9172918 | None:intergenic |
| GAACAAATACCTCAAGGGAA+TGG | 0.572995 | 3.3:-9171216 | None:intergenic |
| CCACATCAATTCTGAACACA+AGG | 0.577487 | 3.3:+9170692 | MS.gene046213:CDS |
| GCAGGTCACATATTGATGGC+AGG | 0.577986 | 3.3:-9172373 | None:intergenic |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 3.3:+9170636 | MS.gene046213:CDS |
| TTCAGGTCAAGGCCAAGGGG+AGG | 0.583372 | 3.3:+9172876 | MS.gene046213:CDS |
| AAGTTCTCTAATTGACTAGG+TGG | 0.584481 | 3.3:-9172954 | None:intergenic |
| TAATTGAACAAATACCTCAA+GGG | 0.585198 | 3.3:-9171221 | None:intergenic |
| AGAATTCAGGTCAAGGCCAA+GGG | 0.585579 | 3.3:+9172872 | MS.gene046213:CDS |
| GAAGTGGTGTGCTTAGAGCC+TGG | 0.587135 | 3.3:+9172300 | MS.gene046213:CDS |
| TAAGGCGAGCTACAGAAGAA+AGG | 0.590587 | 3.3:+9171915 | MS.gene046213:CDS |
| TAGGCTTGATACAATTGAAG+TGG | 0.594031 | 3.3:+9172284 | MS.gene046213:CDS |
| CCTTGTGTTCAGAATTGATG+TGG | 0.601822 | 3.3:-9170692 | None:intergenic |
| AACTGAAGAAGAATATGAAG+AGG | 0.602793 | 3.3:+9172415 | MS.gene046213:CDS |
| TAATCTTCATAAGCATGAGA+AGG | 0.603913 | 3.3:+9172626 | MS.gene046213:CDS |
| CCTGACCAACATTTCTACTG+TGG | 0.607970 | 3.3:-9172919 | None:intergenic |
| TCCTGAAATTGGCTGTGGAA+AGG | 0.608455 | 3.3:+9172110 | MS.gene046213:CDS |
| GTTCTCTAATTGACTAGGTG+GGG | 0.608887 | 3.3:-9172952 | None:intergenic |
| CAGAAGCATGAAGATTCTCA+TGG | 0.611902 | 3.3:+9172156 | MS.gene046213:CDS |
| GTCACCTTCTACAACATCAA+GGG | 0.613362 | 3.3:+9171950 | MS.gene046213:CDS |
| TTTGAAAGCTAATACTTGTG+AGG | 0.617741 | 3.3:+9171141 | MS.gene046213:CDS |
| AATTGCTGGCTTCGTGTGTG+CGG | 0.625868 | 3.3:-9172443 | None:intergenic |
| CTGATGAAGAATTCAGGTCA+AGG | 0.636136 | 3.3:+9172865 | MS.gene046213:CDS |
| AGTTCTACCCCTCCTCGTAG+TGG | 0.640750 | 3.3:+9172063 | MS.gene046213:CDS |
| ACCAACATTTCTACTGTGGG+AGG | 0.645130 | 3.3:-9172915 | None:intergenic |
| CTTGTGTTCAGAATTGATGT+GGG | 0.647147 | 3.3:-9170691 | None:intergenic |
| AACAAGTTCTCTAATTGACT+AGG | 0.649660 | 3.3:-9172957 | None:intergenic |
| GAAACTGAACCTGAATCAGA+GGG | 0.660004 | 3.3:+9171115 | MS.gene046213:CDS |
| TATGCAAAGCCATTCCCTTG+AGG | 0.666726 | 3.3:+9171207 | MS.gene046213:CDS |
| TATGTGACCTGCGACACTTG+TGG | 0.670362 | 3.3:+9172384 | MS.gene046213:CDS |
| GCTAATACTTGTGAGGAATG+TGG | 0.673142 | 3.3:+9171148 | MS.gene046213:CDS |
| GAATTCAGGTCAAGGCCAAG+GGG | 0.693128 | 3.3:+9172873 | MS.gene046213:CDS |
| ACTGAACCTGAATCAGAGGG+TGG | 0.697062 | 3.3:+9171118 | MS.gene046213:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATCTATAAAATTATTA+TGG | + | chr3.3:9171598-9171617 | MS.gene046213:intron | 10.0% |
| !! | TAAAAAATGTAACAAAAATT+TGG | - | chr3.3:9172573-9172592 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTATGTCAATTTT+AGG | + | chr3.3:9171069-9171088 | MS.gene046213:intron | 10.0% |
| !!! | TTTAAAATTACTAATTGTTT+AGG | + | chr3.3:9170954-9170973 | MS.gene046213:intron | 10.0% |
| !!! | TTTTTAGTTTTATGAATTTA+GGG | + | chr3.3:9170929-9170948 | MS.gene046213:intron | 10.0% |
| !!! | CTTTTTAGTTTTATGAATTT+AGG | + | chr3.3:9170928-9170947 | MS.gene046213:intron | 15.0% |
| !! | AAATGAACAAATTGAGTATT+AGG | + | chr3.3:9170784-9170803 | MS.gene046213:intron | 20.0% |
| !! | AAATTCACATTTAAATGCTT+CGG | - | chr3.3:9172472-9172491 | None:intergenic | 20.0% |
| !! | AATGAACAAATTGAGTATTA+GGG | + | chr3.3:9170785-9170804 | MS.gene046213:intron | 20.0% |
| !! | TCTTTCATAAATCTAAGTAA+AGG | - | chr3.3:9172226-9172245 | None:intergenic | 20.0% |
| !! | TTGTGTATAATTGTTTAATG+TGG | + | chr3.3:9171296-9171315 | MS.gene046213:intron | 20.0% |
| !!! | ATCTATAGTTTTAACCAAAT+GGG | + | chr3.3:9170743-9170762 | MS.gene046213:intron | 20.0% |
| !!! | TTTTTTATGTCAATTTTAGG+AGG | + | chr3.3:9171072-9171091 | MS.gene046213:intron | 20.0% |
| ! | AGCATTTAAATGTGAATTTG+AGG | + | chr3.3:9172473-9172492 | MS.gene046213:CDS | 25.0% |
| ! | ATAATTGAACAAATACCTCA+AGG | - | chr3.3:9171225-9171244 | None:intergenic | 25.0% |
| ! | CAAGATTTACGTCATATATA+GGG | + | chr3.3:9172828-9172847 | MS.gene046213:intron | 25.0% |
| ! | GAAGAAAAGCAAAACAATTA+GGG | - | chr3.3:9170844-9170863 | None:intergenic | 25.0% |
| ! | GCATTTAAATGTGAATTTGA+GGG | + | chr3.3:9172474-9172493 | MS.gene046213:CDS | 25.0% |
| ! | GTTCAATTATAAACATCACA+TGG | + | chr3.3:9171235-9171254 | MS.gene046213:intron | 25.0% |
| ! | TAATTGAACAAATACCTCAA+GGG | - | chr3.3:9171224-9171243 | None:intergenic | 25.0% |
| ! | TCAAGATTTACGTCATATAT+AGG | + | chr3.3:9172827-9172846 | MS.gene046213:intron | 25.0% |
| ! | TGAAGAAAAGCAAAACAATT+AGG | - | chr3.3:9170845-9170864 | None:intergenic | 25.0% |
| ! | TTATGCAATTATAGCTTCTA+TGG | + | chr3.3:9171007-9171026 | MS.gene046213:intron | 25.0% |
| !! | CACTTGTTAATTTATTCATG+AGG | + | chr3.3:9171421-9171440 | MS.gene046213:intron | 25.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | - | chr3.3:9170617-9170636 | None:intergenic | 25.0% |
| !!! | CATTTTTTAACTTCCAATTG+TGG | + | chr3.3:9172584-9172603 | MS.gene046213:intron | 25.0% |
| !!! | GATCTATAGTTTTAACCAAA+TGG | + | chr3.3:9170742-9170761 | MS.gene046213:intron | 25.0% |
| !!! | TATTAGGGTTTTGTTTGTTA+AGG | + | chr3.3:9170800-9170819 | MS.gene046213:intron | 25.0% |
| !!! | TTCTACAGTTTTAACCTAAT+GGG | + | chr3.3:9170878-9170897 | MS.gene046213:intron | 25.0% |
| !!! | TTTCTACAGTTTTAACCTAA+TGG | + | chr3.3:9170877-9170896 | MS.gene046213:intron | 25.0% |
| AAAACCTTTATTCTGCAGTT+AGG | + | chr3.3:9172265-9172284 | MS.gene046213:intron | 30.0% | |
| AACAAGTTCTCTAATTGACT+AGG | - | chr3.3:9172960-9172979 | None:intergenic | 30.0% | |
| AACTGAAGAAGAATATGAAG+AGG | + | chr3.3:9172415-9172434 | MS.gene046213:CDS | 30.0% | |
| AAGAAATTGAGTAACCCATT+AGG | - | chr3.3:9170895-9170914 | None:intergenic | 30.0% | |
| AATTGATGTGGGATGTAATT+AGG | - | chr3.3:9170683-9170702 | None:intergenic | 30.0% | |
| AGGATTTAACATGAGCTTTA+AGG | - | chr3.3:9172356-9172375 | None:intergenic | 30.0% | |
| ATGGTCAAATTGATTGTGTA+TGG | + | chr3.3:9171026-9171045 | MS.gene046213:intron | 30.0% | |
| ATTGATGTGGGATGTAATTA+GGG | - | chr3.3:9170682-9170701 | None:intergenic | 30.0% | |
| TAATCTTCATAAGCATGAGA+AGG | + | chr3.3:9172626-9172645 | MS.gene046213:CDS | 30.0% | |
| TTACACCACAAGAATAAACA+AGG | - | chr3.3:9172781-9172800 | None:intergenic | 30.0% | |
| TTTGAAAGCTAATACTTGTG+AGG | + | chr3.3:9171141-9171160 | MS.gene046213:CDS | 30.0% | |
| ! | ACATCGTTTGATAGTTTGTA+TGG | + | chr3.3:9171449-9171468 | MS.gene046213:intron | 30.0% |
| ! | ACATTATAGTGTGAAAGCAT+TGG | + | chr3.3:9171621-9171640 | MS.gene046213:intron | 30.0% |
| ! | CATTTTCGTAAGAAATTGAG+TGG | - | chr3.3:9170769-9170788 | None:intergenic | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | - | chr3.3:9170618-9170637 | None:intergenic | 30.0% |
| ! | GATATGCATGTTTCTATGTT+TGG | + | chr3.3:9171486-9171505 | MS.gene046213:intron | 30.0% |
| ! | TCACTCATTCATACTTTTCA+AGG | - | chr3.3:9171532-9171551 | None:intergenic | 30.0% |
| !! | TTTCTTGTGATTTGTTACAG+AGG | + | chr3.3:9171866-9171885 | MS.gene046213:intron | 30.0% |
| !!! | GGATGTAATTAGGGTTTTTT+TGG | - | chr3.3:9170673-9170692 | None:intergenic | 30.0% |
| AACCTGATACTATTTCACCA+AGG | - | chr3.3:9171691-9171710 | None:intergenic | 35.0% | |
| AAGAAGCTGATGAAGAATTC+AGG | + | chr3.3:9172859-9172878 | MS.gene046213:CDS | 35.0% | |
| AAGTTCTCTAATTGACTAGG+TGG | - | chr3.3:9172957-9172976 | None:intergenic | 35.0% | |
| ACCACAAGAATAAACAAGGA+CGG | - | chr3.3:9172777-9172796 | None:intergenic | 35.0% | |
| AGTTCTCTAATTGACTAGGT+GGG | - | chr3.3:9172956-9172975 | None:intergenic | 35.0% | |
| CAGTTTGTATGTCCTGAAAT+TGG | + | chr3.3:9172099-9172118 | MS.gene046213:CDS | 35.0% | |
| CATATTGGAGTTCTTTGTCT+GGG | - | chr3.3:9171649-9171668 | None:intergenic | 35.0% | |
| CTTGTGTTCAGAATTGATGT+GGG | - | chr3.3:9170694-9170713 | None:intergenic | 35.0% | |
| GTGAAAAATTTCAAGCAACC+AGG | - | chr3.3:9172321-9172340 | None:intergenic | 35.0% | |
| TAGGCTTGATACAATTGAAG+TGG | + | chr3.3:9172284-9172303 | MS.gene046213:CDS | 35.0% | |
| TATGCAATGCCAATGTATGA+TGG | - | chr3.3:9172536-9172555 | None:intergenic | 35.0% | |
| TCTTCAAGGCTACATACAAA+TGG | - | chr3.3:9171892-9171911 | None:intergenic | 35.0% | |
| TGGTGAAATAGTATCAGGTT+GGG | + | chr3.3:9171691-9171710 | MS.gene046213:intron | 35.0% | |
| TTGGTGAAATAGTATCAGGT+TGG | + | chr3.3:9171690-9171709 | MS.gene046213:intron | 35.0% | |
| ! | ATGTAGCCTTGAAGATTGTA+AGG | + | chr3.3:9171897-9171916 | MS.gene046213:CDS | 35.0% |
| ! | CATGTTTCTATGTTTGGTGA+TGG | + | chr3.3:9171492-9171511 | MS.gene046213:intron | 35.0% |
| ! | TTTTCCCTTGATGTTGTAGA+AGG | - | chr3.3:9171957-9171976 | None:intergenic | 35.0% |
| !! | AGAGAACTTGTTATTTGTGC+AGG | + | chr3.3:9172968-9172987 | MS.gene046213:CDS | 35.0% |
| !! | ATGTCAATTTTAGGAGGAGA+TGG | + | chr3.3:9171078-9171097 | MS.gene046213:intron | 35.0% |
| !! | CTGAAGATACATGTTTTTGC+AGG | + | chr3.3:9171553-9171572 | MS.gene046213:intron | 35.0% |
| AAATGCTTCGGAAGAATTGC+TGG | - | chr3.3:9172460-9172479 | None:intergenic | 40.0% | |
| AAGAAATTGAGTGGCCCATT+TGG | - | chr3.3:9170760-9170779 | None:intergenic | 40.0% | |
| AAGTAAAGCCGTTTGTGTGT+GGG | + | chr3.3:9172661-9172680 | MS.gene046213:CDS | 40.0% | |
| AATCCTTGATGAAGCTTCTC+AGG | - | chr3.3:9171723-9171742 | None:intergenic | 40.0% | |
| ATACCTCCTCCATCATACAT+TGG | + | chr3.3:9172524-9172543 | MS.gene046213:intron | 40.0% | |
| ATCTACAGATACCGCAGAAT+TGG | - | chr3.3:9170650-9170669 | None:intergenic | 40.0% | |
| CAAGCCTAACTGCAGAATAA+AGG | - | chr3.3:9172272-9172291 | None:intergenic | 40.0% | |
| CCACATCAATTCTGAACACA+AGG | + | chr3.3:9170692-9170711 | MS.gene046213:CDS | 40.0% | |
| CCTATCGAGAATTGCAAAAG+TGG | + | chr3.3:9171988-9172007 | MS.gene046213:CDS | 40.0% | |
| CCTTGTGTTCAGAATTGATG+TGG | - | chr3.3:9170695-9170714 | None:intergenic | 40.0% | |
| CTGACCAACATTTCTACTGT+GGG | - | chr3.3:9172921-9172940 | None:intergenic | 40.0% | |
| CTGATGAAGAATTCAGGTCA+AGG | + | chr3.3:9172865-9172884 | MS.gene046213:CDS | 40.0% | |
| GAAACTGAACCTGAATCAGA+GGG | + | chr3.3:9171115-9171134 | MS.gene046213:CDS | 40.0% | |
| GAACAAATACCTCAAGGGAA+TGG | - | chr3.3:9171219-9171238 | None:intergenic | 40.0% | |
| GCATATTGGAGTTCTTTGTC+TGG | - | chr3.3:9171650-9171669 | None:intergenic | 40.0% | |
| GCTAATACTTGTGAGGAATG+TGG | + | chr3.3:9171148-9171167 | MS.gene046213:CDS | 40.0% | |
| GTCACCTTCTACAACATCAA+GGG | + | chr3.3:9171950-9171969 | MS.gene046213:CDS | 40.0% | |
| GTTCTCTAATTGACTAGGTG+GGG | - | chr3.3:9172955-9172974 | None:intergenic | 40.0% | |
| TGAAACTGAACCTGAATCAG+AGG | + | chr3.3:9171114-9171133 | MS.gene046213:CDS | 40.0% | |
| TGTGTGGGTTTCCTAATTGT+GGG | + | chr3.3:9172676-9172695 | MS.gene046213:CDS | 40.0% | |
| TGTTGAAGCACATCCACAAT+TGG | - | chr3.3:9172600-9172619 | None:intergenic | 40.0% | |
| TTAGGAAACCCACACACAAA+CGG | - | chr3.3:9172672-9172691 | None:intergenic | 40.0% | |
| ! | CAGAAGCATGAAGATTCTCA+TGG | + | chr3.3:9172156-9172175 | MS.gene046213:CDS | 40.0% |
| ! | CTTCATCAAGGATTTTGCCT+CGG | + | chr3.3:9171729-9171748 | MS.gene046213:intron | 40.0% |
| ! | TCCGTCCTTGTTTATTCTTG+TGG | + | chr3.3:9172773-9172792 | MS.gene046213:intron | 40.0% |
| ! | TTCTGATTTTCACCACTACG+AGG | - | chr3.3:9172078-9172097 | None:intergenic | 40.0% |
| !! | AACATGAGCTTTAAGGCACT+CGG | - | chr3.3:9172349-9172368 | None:intergenic | 40.0% |
| !! | CCACTTTTGCAATTCTCGAT+AGG | - | chr3.3:9171991-9172010 | None:intergenic | 40.0% |
| !!! | ATTTTGGGATTGCATCGCTT+TGG | - | chr3.3:9170602-9170621 | None:intergenic | 40.0% |
| AAAGAACTCCAATATGCGCG+AGG | + | chr3.3:9171653-9171672 | MS.gene046213:intron | 45.0% | |
| AAGAATTCAGGTCAAGGCCA+AGG | + | chr3.3:9172871-9172890 | MS.gene046213:CDS | 45.0% | |
| ACAAGGACGGACAACTTACA+AGG | - | chr3.3:9172764-9172783 | None:intergenic | 45.0% | |
| ACCAACATTTCTACTGTGGG+AGG | - | chr3.3:9172918-9172937 | None:intergenic | 45.0% | |
| ACCTTTCCACAGCCAATTTC+AGG | - | chr3.3:9172114-9172133 | None:intergenic | 45.0% | |
| AGAATTCAGGTCAAGGCCAA+GGG | + | chr3.3:9172872-9172891 | MS.gene046213:CDS | 45.0% | |
| AGCTCGCCTTACAATCTTCA+AGG | - | chr3.3:9171906-9171925 | None:intergenic | 45.0% | |
| CAAGGACGGACAACTTACAA+GGG | - | chr3.3:9172763-9172782 | None:intergenic | 45.0% | |
| CAAGTAAAGCCGTTTGTGTG+TGG | + | chr3.3:9172660-9172679 | MS.gene046213:CDS | 45.0% | |
| CCACAGTAGAAATGTTGGTC+AGG | + | chr3.3:9172919-9172938 | MS.gene046213:CDS | 45.0% | |
| CCTGACCAACATTTCTACTG+TGG | - | chr3.3:9172922-9172941 | None:intergenic | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | + | chr3.3:9170636-9170655 | MS.gene046213:CDS | 45.0% | |
| CGTCACCTTCTACAACATCA+AGG | + | chr3.3:9171949-9171968 | MS.gene046213:CDS | 45.0% | |
| GCAAACCTCATCCCACAATT+AGG | - | chr3.3:9172690-9172709 | None:intergenic | 45.0% | |
| GCAATGCCAATGTATGATGG+AGG | - | chr3.3:9172533-9172552 | None:intergenic | 45.0% | |
| GGCCTTGGTGAAATAGTATC+AGG | + | chr3.3:9171686-9171705 | MS.gene046213:intron | 45.0% | |
| GGTTTCCTAATTGTGGGATG+AGG | + | chr3.3:9172682-9172701 | MS.gene046213:CDS | 45.0% | |
| GTATGTCCTGAAATTGGCTG+TGG | + | chr3.3:9172105-9172124 | MS.gene046213:CDS | 45.0% | |
| GTCACGCTCAATTCAAAACG+AGG | + | chr3.3:9171751-9171770 | MS.gene046213:intron | 45.0% | |
| GTGTGTGGGTTTCCTAATTG+TGG | + | chr3.3:9172675-9172694 | MS.gene046213:CDS | 45.0% | |
| TAAGGCGAGCTACAGAAGAA+AGG | + | chr3.3:9171915-9171934 | MS.gene046213:CDS | 45.0% | |
| TATGCAAAGCCATTCCCTTG+AGG | + | chr3.3:9171207-9171226 | MS.gene046213:CDS | 45.0% | |
| TCCTCCCACAGTAGAAATGT+TGG | + | chr3.3:9172914-9172933 | MS.gene046213:CDS | 45.0% | |
| TCCTGAAATTGGCTGTGGAA+AGG | + | chr3.3:9172110-9172129 | MS.gene046213:CDS | 45.0% | |
| TGTCGCAGGTCACATATTGA+TGG | - | chr3.3:9172380-9172399 | None:intergenic | 45.0% | |
| TTCAAACCACCCTCTGATTC+AGG | - | chr3.3:9171127-9171146 | None:intergenic | 45.0% | |
| ! | ATGCCAATGTATGATGGAGG+AGG | - | chr3.3:9172530-9172549 | None:intergenic | 45.0% |
| ! | ATTTTCACCACTACGAGGAG+GGG | - | chr3.3:9172073-9172092 | None:intergenic | 45.0% |
| ! | GATTTTCACCACTACGAGGA+GGG | - | chr3.3:9172074-9172093 | None:intergenic | 45.0% |
| ! | TGATTTTCACCACTACGAGG+AGG | - | chr3.3:9172075-9172094 | None:intergenic | 45.0% |
| ! | TTTTGAATTGAGCGTGACCG+AGG | - | chr3.3:9171749-9171768 | None:intergenic | 45.0% |
| ACTGAACCTGAATCAGAGGG+TGG | + | chr3.3:9171118-9171137 | MS.gene046213:CDS | 50.0% | |
| ATGTGACCTGCGACACTTGT+GGG | + | chr3.3:9172385-9172404 | MS.gene046213:CDS | 50.0% | |
| CCTCCTGAGAAGCTTCATCA+AGG | + | chr3.3:9171717-9171736 | MS.gene046213:intron | 50.0% | |
| CCTTGATGAAGCTTCTCAGG+AGG | - | chr3.3:9171720-9171739 | None:intergenic | 50.0% | |
| GAATTCAGGTCAAGGCCAAG+GGG | + | chr3.3:9172873-9172892 | MS.gene046213:CDS | 50.0% | |
| TATGTGACCTGCGACACTTG+TGG | + | chr3.3:9172384-9172403 | MS.gene046213:CDS | 50.0% | |
| ! | GCAGGTCACATATTGATGGC+AGG | - | chr3.3:9172376-9172395 | None:intergenic | 50.0% |
| !! | AATTGCTGGCTTCGTGTGTG+CGG | - | chr3.3:9172446-9172465 | None:intergenic | 50.0% |
| AGTTCTACCCCTCCTCGTAG+TGG | + | chr3.3:9172063-9172082 | MS.gene046213:CDS | 55.0% | |
| GAAGTGGTGTGCTTAGAGCC+TGG | + | chr3.3:9172300-9172319 | MS.gene046213:CDS | 55.0% | |
| TTTCTCTTCACCCCTCCCCT+TGG | - | chr3.3:9172891-9172910 | None:intergenic | 55.0% | |
| ! | CTTAGTCCCACAAGTGTCGC+AGG | - | chr3.3:9172394-9172413 | None:intergenic | 55.0% |
| GCGTGATGCCTCGCGCATAT+TGG | - | chr3.3:9171664-9171683 | None:intergenic | 60.0% | |
| TCAGGTCAAGGCCAAGGGGA+GGG | + | chr3.3:9172877-9172896 | MS.gene046213:CDS | 60.0% | |
| TTCAGGTCAAGGCCAAGGGG+AGG | + | chr3.3:9172876-9172895 | MS.gene046213:CDS | 60.0% | |
| ! | TATGCGCGAGGCATCACGCT+TGG | + | chr3.3:9171665-9171684 | MS.gene046213:intron | 60.0% |
| CAGGTCAAGGCCAAGGGGAG+GGG | + | chr3.3:9172878-9172897 | MS.gene046213:CDS | 65.0% | |
| ! | CGAGGCATCACGCTTGGCCT+TGG | + | chr3.3:9171671-9171690 | MS.gene046213:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 9170585 | 9173001 | 9170585 | ID=MS.gene046213 |
| chr3.3 | mRNA | 9170585 | 9173001 | 9170585 | ID=MS.gene046213.t1;Parent=MS.gene046213 |
| chr3.3 | exon | 9170585 | 9170713 | 9170585 | ID=MS.gene046213.t1.exon1;Parent=MS.gene046213.t1 |
| chr3.3 | CDS | 9170585 | 9170713 | 9170585 | ID=cds.MS.gene046213.t1;Parent=MS.gene046213.t1 |
| chr3.3 | exon | 9171091 | 9171228 | 9171091 | ID=MS.gene046213.t1.exon2;Parent=MS.gene046213.t1 |
| chr3.3 | CDS | 9171091 | 9171228 | 9171091 | ID=cds.MS.gene046213.t1;Parent=MS.gene046213.t1 |
| chr3.3 | exon | 9171886 | 9172177 | 9171886 | ID=MS.gene046213.t1.exon3;Parent=MS.gene046213.t1 |
| chr3.3 | CDS | 9171886 | 9172177 | 9171886 | ID=cds.MS.gene046213.t1;Parent=MS.gene046213.t1 |
| chr3.3 | exon | 9172283 | 9172518 | 9172283 | ID=MS.gene046213.t1.exon4;Parent=MS.gene046213.t1 |
| chr3.3 | CDS | 9172283 | 9172518 | 9172283 | ID=cds.MS.gene046213.t1;Parent=MS.gene046213.t1 |
| chr3.3 | exon | 9172621 | 9172764 | 9172621 | ID=MS.gene046213.t1.exon5;Parent=MS.gene046213.t1 |
| chr3.3 | CDS | 9172621 | 9172764 | 9172621 | ID=cds.MS.gene046213.t1;Parent=MS.gene046213.t1 |
| chr3.3 | exon | 9172849 | 9173001 | 9172849 | ID=MS.gene046213.t1.exon6;Parent=MS.gene046213.t1 |
| chr3.3 | CDS | 9172849 | 9173001 | 9172849 | ID=cds.MS.gene046213.t1;Parent=MS.gene046213.t1 |
| Gene Sequence |
| Protein sequence |
