Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93729.t1 | XP_024635969.1 | 95.1 | 364 | 17 | 1 | 1 | 363 | 1 | 364 | 3.60E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93729.t1 | Q84MZ4 | 40.4 | 389 | 179 | 4 | 14 | 350 | 15 | 402 | 2.1e-61 | 237.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93729.t1 | A0A2Z6M9M5 | 76.6 | 384 | 68 | 2 | 1 | 363 | 1 | 383 | 3.7e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene93729.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055166 | MS.gene93729 | 0.82953 | 4.89E-55 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93729.t1 | MTR_8g039590 | 78.049 | 41 | 8 | 1 | 314 | 354 | 26 | 65 | 2.55e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93729.t1 | AT1G72050 | 55.013 | 389 | 122 | 3 | 14 | 350 | 15 | 402 | 1.01e-147 | 424 |
| MS.gene93729.t1 | AT1G72050 | 55.013 | 389 | 122 | 3 | 14 | 350 | 30 | 417 | 1.24e-147 | 424 |
| MS.gene93729.t1 | AT1G72050 | 54.777 | 314 | 90 | 2 | 88 | 350 | 2 | 314 | 1.81e-118 | 346 |
| MS.gene93729.t1 | AT1G72050 | 52.536 | 276 | 80 | 1 | 88 | 312 | 2 | 277 | 6.70e-99 | 296 |
Find 68 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.068375 | 3.2:-7164574 | None:intergenic |
| AATTGATGTGGGATGTAATT+AGG | 0.159176 | 3.2:-7164639 | None:intergenic |
| AAGATTTAACATGAGCTTTA+AGG | 0.205162 | 3.2:-7166538 | None:intergenic |
| ACCTTTCCACAGCCAATTTC+AGG | 0.226103 | 3.2:-7166272 | None:intergenic |
| ATTGATGTGGGATGTAATTA+GGG | 0.319248 | 3.2:-7164638 | None:intergenic |
| AAGAAGCTGATGAAGAATTC+AGG | 0.351513 | 3.2:+7167042 | MS.gene93729:CDS |
| GCAAACCTCATTCCACAATT+AGG | 0.364679 | 3.2:-7166870 | None:intergenic |
| AAATTCACATTTAAATGCTT+CGG | 0.389923 | 3.2:-7166654 | None:intergenic |
| CCACAGTAGAAATGTTAGTT+AGG | 0.390467 | 3.2:+7167102 | MS.gene93729:CDS |
| CAGTTTGTATGTCCTGAAAT+TGG | 0.397925 | 3.2:+7166260 | MS.gene93729:CDS |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 3.2:-7164606 | None:intergenic |
| TTTCTCTTCACCCCTCCCCT+TGG | 0.432023 | 3.2:-7167071 | None:intergenic |
| AGAGAACTTGTTATTCGTGC+AGG | 0.446937 | 3.2:+7167151 | MS.gene93729:CDS |
| TTCAAACCACCCTCTGATTG+AGG | 0.447189 | 3.2:-7165100 | None:intergenic |
| AAATGCTTCGGAGGAACTGC+TGG | 0.448941 | 3.2:-7166642 | None:intergenic |
| ATGTAGCCTTGAAGATTGTA+AGG | 0.454317 | 3.2:+7166058 | MS.gene93729:CDS |
| AGCATTTAAATGTGAATTTG+AGG | 0.455222 | 3.2:+7166658 | MS.gene93729:CDS |
| GTGTGTGGGTTTCCTAATTG+TGG | 0.466837 | 3.2:+7166858 | MS.gene93729:CDS |
| CGGCTTTACTTGAAAGTGTA+CGG | 0.472717 | 3.2:-7166832 | None:intergenic |
| AGCTTGCCTTACAATCTTCA+AGG | 0.479189 | 3.2:-7166064 | None:intergenic |
| ATGTGAACTGTGACACTTGT+GGG | 0.479574 | 3.2:+7166570 | MS.gene93729:CDS |
| CAAGTAAAGCCGTTTGTGTG+TGG | 0.487892 | 3.2:+7166843 | MS.gene93729:CDS |
| CAGGTCAAGGCCAAGGGGAG+GGG | 0.490449 | 3.2:+7167061 | MS.gene93729:CDS |
| TGTCACAGTTCACATATTGA+TGG | 0.505697 | 3.2:-7166562 | None:intergenic |
| GCATTTAAATGTGAATTTGA+GGG | 0.510756 | 3.2:+7166659 | MS.gene93729:CDS |
| CCTGTCGAGAATTGCAAAAG+TGG | 0.512625 | 3.2:+7166149 | MS.gene93729:CDS |
| TCAGGTCAAGGCCAAGGGGA+GGG | 0.518065 | 3.2:+7167060 | MS.gene93729:CDS |
| TCTTCAAGGCTACATACAAA+TGG | 0.524961 | 3.2:-7166050 | None:intergenic |
| AACATGAGCTTTAAGGCACT+CGG | 0.529952 | 3.2:-7166531 | None:intergenic |
| AAGTAAAGCCGTTTGTGTGT+GGG | 0.534040 | 3.2:+7166844 | MS.gene93729:CDS |
| TGAAACTGAACCTCAATCAG+AGG | 0.544355 | 3.2:+7165090 | MS.gene93729:CDS |
| AAGAATTCAGGTCAAGGCCA+AGG | 0.544513 | 3.2:+7167054 | MS.gene93729:CDS |
| GTATGTCCTGAAATTGGCTG+TGG | 0.551180 | 3.2:+7166266 | MS.gene93729:CDS |
| TAAGGCAAGCTACAGAAGAA+AGG | 0.551380 | 3.2:+7166076 | MS.gene93729:CDS |
| TTCACATTTAAATGCTTCGG+AGG | 0.553444 | 3.2:-7166651 | None:intergenic |
| GGTTTCCTAATTGTGGAATG+AGG | 0.556382 | 3.2:+7166865 | MS.gene93729:CDS |
| TTAGGAAACCCACACACAAA+CGG | 0.558755 | 3.2:-7166852 | None:intergenic |
| CTAACTAACATTTCTACTGT+GGG | 0.561562 | 3.2:-7167101 | None:intergenic |
| CGTCACCTTCTACAACATCA+AGG | 0.564236 | 3.2:+7166110 | MS.gene93729:CDS |
| AGTTCTCTAATTGACTAGGT+GGG | 0.566365 | 3.2:-7167136 | None:intergenic |
| CCTAACTAACATTTCTACTG+TGG | 0.575540 | 3.2:-7167102 | None:intergenic |
| CCACATCAATTCTGAACACA+AGG | 0.577487 | 3.2:+7164651 | MS.gene93729:CDS |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 3.2:+7164595 | MS.gene93729:CDS |
| TTCAGGTCAAGGCCAAGGGG+AGG | 0.583372 | 3.2:+7167059 | MS.gene93729:CDS |
| AAGTTCTCTAATTGACTAGG+TGG | 0.584481 | 3.2:-7167137 | None:intergenic |
| AGAATTCAGGTCAAGGCCAA+GGG | 0.585579 | 3.2:+7167055 | MS.gene93729:CDS |
| GAAGTGGTGTGCTTAGAGCC+TGG | 0.587135 | 3.2:+7166485 | MS.gene93729:CDS |
| AACTGCTGGCTTCATGTGTG+CGG | 0.588715 | 3.2:-7166628 | None:intergenic |
| CAGAAGCATGAAGATTCTCA+TGG | 0.597767 | 3.2:+7166317 | MS.gene93729:CDS |
| CCTTGTGTTCAGAATTGATG+TGG | 0.601822 | 3.2:-7164651 | None:intergenic |
| AACTGAAGAAGAATATGAAG+AGG | 0.602793 | 3.2:+7166600 | MS.gene93729:CDS |
| TCCTGAAATTGGCTGTGGAA+AGG | 0.608455 | 3.2:+7166271 | MS.gene93729:CDS |
| GTTCTCTAATTGACTAGGTG+GGG | 0.608887 | 3.2:-7167135 | None:intergenic |
| GTCACCTTCTACAACATCAA+GGG | 0.613362 | 3.2:+7166111 | MS.gene93729:CDS |
| TTTGAAAGCTAATACTTGTG+AGG | 0.617741 | 3.2:+7165117 | MS.gene93729:CDS |
| TAGGCTCGAAACAATTGAAG+TGG | 0.632928 | 3.2:+7166469 | MS.gene93729:CDS |
| CTGATGAAGAATTCAGGTCA+AGG | 0.636136 | 3.2:+7167048 | MS.gene93729:CDS |
| ACTAACATTTCTACTGTGGG+AGG | 0.639382 | 3.2:-7167098 | None:intergenic |
| AGTTCTACCCCTCCTCGTAG+TGG | 0.640750 | 3.2:+7166224 | MS.gene93729:CDS |
| TAATTGAACAGATACCTCGA+GGG | 0.641297 | 3.2:-7165197 | None:intergenic |
| GAAACTGAACCTCAATCAGA+GGG | 0.642449 | 3.2:+7165091 | MS.gene93729:CDS |
| CTTGTGTTCAGAATTGATGT+GGG | 0.647147 | 3.2:-7164650 | None:intergenic |
| AACAAGTTCTCTAATTGACT+AGG | 0.656480 | 3.2:-7167140 | None:intergenic |
| GCTAATACTTGTGAGGAATG+TGG | 0.673142 | 3.2:+7165124 | MS.gene93729:CDS |
| GAATTCAGGTCAAGGCCAAG+GGG | 0.693128 | 3.2:+7167056 | MS.gene93729:CDS |
| ACTGAACCTCAATCAGAGGG+TGG | 0.697506 | 3.2:+7165094 | MS.gene93729:CDS |
| TATGTGAACTGTGACACTTG+TGG | 0.719735 | 3.2:+7166569 | MS.gene93729:CDS |
| TATGCAAAGTCATTCCCTCG+AGG | 0.752078 | 3.2:+7165183 | MS.gene93729:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATGAATTTGTATATT+TGG | + | chr3.2:7165650-7165669 | MS.gene93729:intron | 10.0% |
| !! | AATGATCTATAAAATAATTA+TGG | + | chr3.2:7165764-7165783 | MS.gene93729:intron | 10.0% |
| !! | TTATACTTTATAATTCATTT+AGG | + | chr3.2:7165291-7165310 | MS.gene93729:intron | 10.0% |
| !!! | TTTAAAATTACTAATTGTTT+AGG | + | chr3.2:7164921-7164940 | MS.gene93729:intron | 10.0% |
| !! | ATAAACTAGTTAAATTTAGA+AGG | - | chr3.2:7165275-7165294 | None:intergenic | 15.0% |
| !! | CAAGATTTATTTCATATATA+GGG | + | chr3.2:7167011-7167030 | MS.gene93729:intron | 15.0% |
| !! | TAAAAACTGTAACAAAAATT+TGG | - | chr3.2:7166756-7166775 | None:intergenic | 15.0% |
| !! | TATAAACTAGTTAAATTTAG+AGG | - | chr3.2:7165276-7165295 | None:intergenic | 15.0% |
| !! | TCAAGATTTATTTCATATAT+AGG | + | chr3.2:7167010-7167029 | MS.gene93729:intron | 15.0% |
| !!! | AGTTTTAGTTTTATGAATTT+AGG | + | chr3.2:7164895-7164914 | MS.gene93729:intron | 15.0% |
| !!! | ATGTTTTATATGTTTAGTTT+TGG | + | chr3.2:7165607-7165626 | MS.gene93729:intron | 15.0% |
| !!! | ATTTTTTTGATGTGAATTTT+AGG | + | chr3.2:7165045-7165064 | MS.gene93729:intron | 15.0% |
| !!! | GTTTTAGTTTTATGAATTTA+GGG | + | chr3.2:7164896-7164915 | MS.gene93729:intron | 15.0% |
| !! | AAATTCACATTTAAATGCTT+CGG | - | chr3.2:7166657-7166676 | None:intergenic | 20.0% |
| !! | TATCATTAAATTCGTTTGTA+TGG | + | chr3.2:7165563-7165582 | MS.gene93729:intron | 20.0% |
| !! | TATTAGCAAAATCAAAAGAA+AGG | - | chr3.2:7166350-7166369 | None:intergenic | 20.0% |
| !!! | ACTCAAAATTTGTTCATTTT+CGG | - | chr3.2:7164742-7164761 | None:intergenic | 20.0% |
| !!! | ATGAACAAATTTTGAGTATT+AGG | + | chr3.2:7164745-7164764 | MS.gene93729:intron | 20.0% |
| !!! | GATCTATAGTTTTAACTAAA+TGG | + | chr3.2:7164701-7164720 | MS.gene93729:intron | 20.0% |
| !!! | TGAACAAATTTTGAGTATTA+GGG | + | chr3.2:7164746-7164765 | MS.gene93729:intron | 20.0% |
| !!! | TGAATTTGTATATTTGGTTT+TGG | + | chr3.2:7165656-7165675 | MS.gene93729:intron | 20.0% |
| !!! | TTGTTTTTGATAAAACACTA+TGG | + | chr3.2:7165457-7165476 | MS.gene93729:intron | 20.0% |
| !!! | TTTTTAAAGAAATAGAACTC+TGG | - | chr3.2:7165683-7165702 | None:intergenic | 20.0% |
| ! | AAGATTTAACATGAGCTTTA+AGG | - | chr3.2:7166541-7166560 | None:intergenic | 25.0% |
| ! | AGCATTTAAATGTGAATTTG+AGG | + | chr3.2:7166658-7166677 | MS.gene93729:CDS | 25.0% |
| ! | GAAGAAAAGCAAAACAATTA+GGG | - | chr3.2:7164805-7164824 | None:intergenic | 25.0% |
| ! | GCATTTAAATGTGAATTTGA+GGG | + | chr3.2:7166659-7166678 | MS.gene93729:CDS | 25.0% |
| ! | GTTATTGTTGAAATTCAGTA+AGG | + | chr3.2:7165530-7165549 | MS.gene93729:intron | 25.0% |
| ! | GTTGTGTATACTTGAATATT+GGG | + | chr3.2:7165356-7165375 | MS.gene93729:intron | 25.0% |
| ! | TGAAGAAAAGCAAAACAATT+AGG | - | chr3.2:7164806-7164825 | None:intergenic | 25.0% |
| ! | TGTTGTGTATACTTGAATAT+TGG | + | chr3.2:7165355-7165374 | MS.gene93729:intron | 25.0% |
| ! | TTATGCAATTATAGCTTCTA+TGG | + | chr3.2:7164974-7164993 | MS.gene93729:intron | 25.0% |
| ! | TTGTGTATACTTGAATATTG+GGG | + | chr3.2:7165357-7165376 | MS.gene93729:intron | 25.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | - | chr3.2:7164576-7164595 | None:intergenic | 25.0% |
| !! | TTTTTGATGTGAATTTTAGG+AGG | + | chr3.2:7165048-7165067 | MS.gene93729:intron | 25.0% |
| !!! | CAGTTTTTAACTTCAAAATG+TGG | + | chr3.2:7166767-7166786 | MS.gene93729:intron | 25.0% |
| !!! | TATTAGGGTTTTGTTTGTTA+AGG | + | chr3.2:7164761-7164780 | MS.gene93729:intron | 25.0% |
| !!! | TTTTTTAAGAAAAAGAACCC+TGG | - | chr3.2:7165634-7165653 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGATTTGTTACAG+AGG | + | chr3.2:7166027-7166046 | MS.gene93729:intron | 25.0% |
| AACAAGTTCTCTAATTGACT+AGG | - | chr3.2:7167143-7167162 | None:intergenic | 30.0% | |
| AACTGAAGAAGAATATGAAG+AGG | + | chr3.2:7166600-7166619 | MS.gene93729:CDS | 30.0% | |
| AAGAAATTGAGTAACCCATT+GGG | - | chr3.2:7164856-7164875 | None:intergenic | 30.0% | |
| AATTGATGTGGGATGTAATT+AGG | - | chr3.2:7164642-7164661 | None:intergenic | 30.0% | |
| ATTGATGTGGGATGTAATTA+GGG | - | chr3.2:7164641-7164660 | None:intergenic | 30.0% | |
| CTAACTAACATTTCTACTGT+GGG | - | chr3.2:7167104-7167123 | None:intergenic | 30.0% | |
| TAAGAAATTGAGTAACCCAT+TGG | - | chr3.2:7164857-7164876 | None:intergenic | 30.0% | |
| TATGTGTGATTGATTGTGTA+TGG | + | chr3.2:7165002-7165021 | MS.gene93729:intron | 30.0% | |
| TTACACCACAAGAATAAACA+AGG | - | chr3.2:7166964-7166983 | None:intergenic | 30.0% | |
| TTGTTGAAATTCAGTAAGGA+TGG | + | chr3.2:7165534-7165553 | MS.gene93729:intron | 30.0% | |
| TTTGAAAGCTAATACTTGTG+AGG | + | chr3.2:7165117-7165136 | MS.gene93729:CDS | 30.0% | |
| ! | ACATTATAGTGTGAAAGCAT+TGG | + | chr3.2:7165787-7165806 | MS.gene93729:intron | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | - | chr3.2:7164577-7164596 | None:intergenic | 30.0% |
| !! | CTAAAGATACATGTTTTTGC+AGG | + | chr3.2:7165719-7165738 | MS.gene93729:intron | 30.0% |
| !! | TTCTACAGTTTTAACCCAAT+GGG | + | chr3.2:7164839-7164858 | MS.gene93729:intron | 30.0% |
| !! | TTTCTACAGTTTTAACCCAA+TGG | + | chr3.2:7164838-7164857 | MS.gene93729:intron | 30.0% |
| !!! | ATATGTTTAGTTTTGGTCCA+GGG | + | chr3.2:7165614-7165633 | MS.gene93729:intron | 30.0% |
| !!! | GGATGTAATTAGGGTTTTTT+TGG | - | chr3.2:7164632-7164651 | None:intergenic | 30.0% |
| !!! | TATATGTTTAGTTTTGGTCC+AGG | + | chr3.2:7165613-7165632 | MS.gene93729:intron | 30.0% |
| AAAACCTTCATTCTGCAGTT+AGG | + | chr3.2:7166450-7166469 | MS.gene93729:intron | 35.0% | |
| AACAAACTGCAAACAGTTGA+TGG | - | chr3.2:7166389-7166408 | None:intergenic | 35.0% | |
| AACCTGATACTATTTCACCA+AGG | - | chr3.2:7165857-7165876 | None:intergenic | 35.0% | |
| AAGAAGCTGATGAAGAATTC+AGG | + | chr3.2:7167042-7167061 | MS.gene93729:CDS | 35.0% | |
| AAGTTCTCTAATTGACTAGG+TGG | - | chr3.2:7167140-7167159 | None:intergenic | 35.0% | |
| ACCACAAGAATAAACAAGGA+CGG | - | chr3.2:7166960-7166979 | None:intergenic | 35.0% | |
| AGTTCTCTAATTGACTAGGT+GGG | - | chr3.2:7167139-7167158 | None:intergenic | 35.0% | |
| ATAATTGAACAGATACCTCG+AGG | - | chr3.2:7165201-7165220 | None:intergenic | 35.0% | |
| CAGTTTGTATGTCCTGAAAT+TGG | + | chr3.2:7166260-7166279 | MS.gene93729:CDS | 35.0% | |
| CATATTGGAGTTCTTTGTCT+GGG | - | chr3.2:7165815-7165834 | None:intergenic | 35.0% | |
| CCACAGTAGAAATGTTAGTT+AGG | + | chr3.2:7167102-7167121 | MS.gene93729:CDS | 35.0% | |
| CCTAACTAACATTTCTACTG+TGG | - | chr3.2:7167105-7167124 | None:intergenic | 35.0% | |
| CTTGTGTTCAGAATTGATGT+GGG | - | chr3.2:7164653-7164672 | None:intergenic | 35.0% | |
| GTGAAAAATTTCATGCAACC+AGG | - | chr3.2:7166506-7166525 | None:intergenic | 35.0% | |
| TAATTGAACAGATACCTCGA+GGG | - | chr3.2:7165200-7165219 | None:intergenic | 35.0% | |
| TCTTCAAGGCTACATACAAA+TGG | - | chr3.2:7166053-7166072 | None:intergenic | 35.0% | |
| TGGTGAAATAGTATCAGGTT+GGG | + | chr3.2:7165857-7165876 | MS.gene93729:intron | 35.0% | |
| TGTATGCAATGCTAGTATGA+TGG | - | chr3.2:7166721-7166740 | None:intergenic | 35.0% | |
| TGTCACAGTTCACATATTGA+TGG | - | chr3.2:7166565-7166584 | None:intergenic | 35.0% | |
| TGTGTCTCTTGTTCTTATCA+AGG | + | chr3.2:7165954-7165973 | MS.gene93729:intron | 35.0% | |
| TTCACATTTAAATGCTTCGG+AGG | - | chr3.2:7166654-7166673 | None:intergenic | 35.0% | |
| TTGGTGAAATAGTATCAGGT+TGG | + | chr3.2:7165856-7165875 | MS.gene93729:intron | 35.0% | |
| ! | ATGTAGCCTTGAAGATTGTA+AGG | + | chr3.2:7166058-7166077 | MS.gene93729:CDS | 35.0% |
| ! | TTTAGAAGGCTCTAATACAC+AGG | - | chr3.2:7165261-7165280 | None:intergenic | 35.0% |
| ! | TTTTCCCTTGATGTTGTAGA+AGG | - | chr3.2:7166118-7166137 | None:intergenic | 35.0% |
| !! | ATGTGAATTTTAGGAGGAGA+TGG | + | chr3.2:7165054-7165073 | MS.gene93729:intron | 35.0% |
| !!! | ATTTTGGGATTGCATCGTTT+TGG | - | chr3.2:7164561-7164580 | None:intergenic | 35.0% |
| AAGTAAAGCCGTTTGTGTGT+GGG | + | chr3.2:7166844-7166863 | MS.gene93729:CDS | 40.0% | |
| AATCCTTGATGAAGCTTCTC+AGG | - | chr3.2:7165889-7165908 | None:intergenic | 40.0% | |
| ACTAACATTTCTACTGTGGG+AGG | - | chr3.2:7167101-7167120 | None:intergenic | 40.0% | |
| AGCTTGCCTTACAATCTTCA+AGG | - | chr3.2:7166067-7166086 | None:intergenic | 40.0% | |
| ATCTACAGATACCGCAGAAT+TGG | - | chr3.2:7164609-7164628 | None:intergenic | 40.0% | |
| ATGCAATGCTAGTATGATGG+AGG | - | chr3.2:7166718-7166737 | None:intergenic | 40.0% | |
| ATGTGAACTGTGACACTTGT+GGG | + | chr3.2:7166570-7166589 | MS.gene93729:CDS | 40.0% | |
| CCACATCAATTCTGAACACA+AGG | + | chr3.2:7164651-7164670 | MS.gene93729:CDS | 40.0% | |
| CCTTGTGTTCAGAATTGATG+TGG | - | chr3.2:7164654-7164673 | None:intergenic | 40.0% | |
| CTGATGAAGAATTCAGGTCA+AGG | + | chr3.2:7167048-7167067 | MS.gene93729:CDS | 40.0% | |
| GAAACTGAACCTCAATCAGA+GGG | + | chr3.2:7165091-7165110 | MS.gene93729:CDS | 40.0% | |
| GCAAACCTCATTCCACAATT+AGG | - | chr3.2:7166873-7166892 | None:intergenic | 40.0% | |
| GCATATTGGAGTTCTTTGTC+TGG | - | chr3.2:7165816-7165835 | None:intergenic | 40.0% | |
| GCTAATACTTGTGAGGAATG+TGG | + | chr3.2:7165124-7165143 | MS.gene93729:CDS | 40.0% | |
| GGTTTCCTAATTGTGGAATG+AGG | + | chr3.2:7166865-7166884 | MS.gene93729:CDS | 40.0% | |
| GTCACCTTCTACAACATCAA+GGG | + | chr3.2:7166111-7166130 | MS.gene93729:CDS | 40.0% | |
| GTTCTCTAATTGACTAGGTG+GGG | - | chr3.2:7167138-7167157 | None:intergenic | 40.0% | |
| TAAGGCAAGCTACAGAAGAA+AGG | + | chr3.2:7166076-7166095 | MS.gene93729:CDS | 40.0% | |
| TAGGCTCGAAACAATTGAAG+TGG | + | chr3.2:7166469-7166488 | MS.gene93729:CDS | 40.0% | |
| TATGTGAACTGTGACACTTG+TGG | + | chr3.2:7166569-7166588 | MS.gene93729:CDS | 40.0% | |
| TGAAACTGAACCTCAATCAG+AGG | + | chr3.2:7165090-7165109 | MS.gene93729:CDS | 40.0% | |
| TTAGGAAACCCACACACAAA+CGG | - | chr3.2:7166855-7166874 | None:intergenic | 40.0% | |
| ! | AAGCTTTATCCCACTAAGTG+GGG | - | chr3.2:7165506-7165525 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | - | chr3.2:7165507-7165526 | None:intergenic | 40.0% |
| ! | CAGAAGCATGAAGATTCTCA+TGG | + | chr3.2:7166317-7166336 | MS.gene93729:CDS | 40.0% |
| ! | CGGCTTTACTTGAAAGTGTA+CGG | - | chr3.2:7166835-7166854 | None:intergenic | 40.0% |
| ! | TCCGTCCTTGTTTATTCTTG+TGG | + | chr3.2:7166956-7166975 | MS.gene93729:intron | 40.0% |
| ! | TTCTGATTTTCACCACTACG+AGG | - | chr3.2:7166239-7166258 | None:intergenic | 40.0% |
| !! | AACATGAGCTTTAAGGCACT+CGG | - | chr3.2:7166534-7166553 | None:intergenic | 40.0% |
| !! | AGAGAACTTGTTATTCGTGC+AGG | + | chr3.2:7167151-7167170 | MS.gene93729:CDS | 40.0% |
| AAAGAACTCCAATATGCGCG+AGG | + | chr3.2:7165819-7165838 | MS.gene93729:intron | 45.0% | |
| AAGAATTCAGGTCAAGGCCA+AGG | + | chr3.2:7167054-7167073 | MS.gene93729:CDS | 45.0% | |
| ACAAGGACGGACAACTTACA+AGG | - | chr3.2:7166947-7166966 | None:intergenic | 45.0% | |
| ACCTTTCCACAGCCAATTTC+AGG | - | chr3.2:7166275-7166294 | None:intergenic | 45.0% | |
| AGAATTCAGGTCAAGGCCAA+GGG | + | chr3.2:7167055-7167074 | MS.gene93729:CDS | 45.0% | |
| CAAGGACGGACAACTTACAA+GGG | - | chr3.2:7166946-7166965 | None:intergenic | 45.0% | |
| CAAGTAAAGCCGTTTGTGTG+TGG | + | chr3.2:7166843-7166862 | MS.gene93729:CDS | 45.0% | |
| CCACTTAGTGGGATAAAGCT+TGG | + | chr3.2:7165505-7165524 | MS.gene93729:intron | 45.0% | |
| CCTGTCGAGAATTGCAAAAG+TGG | + | chr3.2:7166149-7166168 | MS.gene93729:CDS | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | + | chr3.2:7164595-7164614 | MS.gene93729:CDS | 45.0% | |
| CGTCACCTTCTACAACATCA+AGG | + | chr3.2:7166110-7166129 | MS.gene93729:CDS | 45.0% | |
| GCTTCATCAAGGATTTGCCT+CGG | + | chr3.2:7165894-7165913 | MS.gene93729:intron | 45.0% | |
| GGCCTTGGTGAAATAGTATC+AGG | + | chr3.2:7165852-7165871 | MS.gene93729:intron | 45.0% | |
| GTATGTCCTGAAATTGGCTG+TGG | + | chr3.2:7166266-7166285 | MS.gene93729:CDS | 45.0% | |
| GTCACGCTCAATTCAATACG+AGG | + | chr3.2:7165916-7165935 | MS.gene93729:intron | 45.0% | |
| GTGTGTGGGTTTCCTAATTG+TGG | + | chr3.2:7166858-7166877 | MS.gene93729:CDS | 45.0% | |
| TATGCAAAGTCATTCCCTCG+AGG | + | chr3.2:7165183-7165202 | MS.gene93729:CDS | 45.0% | |
| TATTGAATTGAGCGTGACCG+AGG | - | chr3.2:7165914-7165933 | None:intergenic | 45.0% | |
| TCCTGAAATTGGCTGTGGAA+AGG | + | chr3.2:7166271-7166290 | MS.gene93729:CDS | 45.0% | |
| TTCAAACCACCCTCTGATTG+AGG | - | chr3.2:7165103-7165122 | None:intergenic | 45.0% | |
| TTTATCCCACTAAGTGGGGT+TGG | - | chr3.2:7165502-7165521 | None:intergenic | 45.0% | |
| ! | ATTTTCACCACTACGAGGAG+GGG | - | chr3.2:7166234-7166253 | None:intergenic | 45.0% |
| ! | CAATGCTAGTATGATGGAGG+AGG | - | chr3.2:7166715-7166734 | None:intergenic | 45.0% |
| ! | CCAAGCTTTATCCCACTAAG+TGG | - | chr3.2:7165508-7165527 | None:intergenic | 45.0% |
| ! | GATTTTCACCACTACGAGGA+GGG | - | chr3.2:7166235-7166254 | None:intergenic | 45.0% |
| ! | TGATTTTCACCACTACGAGG+AGG | - | chr3.2:7166236-7166255 | None:intergenic | 45.0% |
| !! | CCACTTTTGCAATTCTCGAC+AGG | - | chr3.2:7166152-7166171 | None:intergenic | 45.0% |
| AAATGCTTCGGAGGAACTGC+TGG | - | chr3.2:7166645-7166664 | None:intergenic | 50.0% | |
| ACTGAACCTCAATCAGAGGG+TGG | + | chr3.2:7165094-7165113 | MS.gene93729:CDS | 50.0% | |
| ATGTAGCCAACCCCACTTAG+TGG | + | chr3.2:7165493-7165512 | MS.gene93729:intron | 50.0% | |
| CAAGGCTGATCTGCAGTTGT+CGG | + | chr3.2:7165972-7165991 | MS.gene93729:intron | 50.0% | |
| CCTCCTGAGAAGCTTCATCA+AGG | + | chr3.2:7165883-7165902 | MS.gene93729:intron | 50.0% | |
| CCTTGATGAAGCTTCTCAGG+AGG | - | chr3.2:7165886-7165905 | None:intergenic | 50.0% | |
| CGAGCCTAACTGCAGAATGA+AGG | - | chr3.2:7166457-7166476 | None:intergenic | 50.0% | |
| GAATTCAGGTCAAGGCCAAG+GGG | + | chr3.2:7167056-7167075 | MS.gene93729:CDS | 50.0% | |
| TGTAGCCAACCCCACTTAGT+GGG | + | chr3.2:7165494-7165513 | MS.gene93729:intron | 50.0% | |
| !! | AACTGCTGGCTTCATGTGTG+CGG | - | chr3.2:7166631-7166650 | None:intergenic | 50.0% |
| AGTTCTACCCCTCCTCGTAG+TGG | + | chr3.2:7166224-7166243 | MS.gene93729:CDS | 55.0% | |
| GAAGTGGTGTGCTTAGAGCC+TGG | + | chr3.2:7166485-7166504 | MS.gene93729:CDS | 55.0% | |
| TTTCTCTTCACCCCTCCCCT+TGG | - | chr3.2:7167074-7167093 | None:intergenic | 55.0% | |
| GCGTGATGCCTCGCGCATAT+TGG | - | chr3.2:7165830-7165849 | None:intergenic | 60.0% | |
| TCAGGTCAAGGCCAAGGGGA+GGG | + | chr3.2:7167060-7167079 | MS.gene93729:CDS | 60.0% | |
| TTCAGGTCAAGGCCAAGGGG+AGG | + | chr3.2:7167059-7167078 | MS.gene93729:CDS | 60.0% | |
| ! | TATGCGCGAGGCATCACGCT+TGG | + | chr3.2:7165831-7165850 | MS.gene93729:intron | 60.0% |
| CAGGTCAAGGCCAAGGGGAG+GGG | + | chr3.2:7167061-7167080 | MS.gene93729:CDS | 65.0% | |
| ! | CGAGGCATCACGCTTGGCCT+TGG | + | chr3.2:7165837-7165856 | MS.gene93729:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 7164544 | 7167184 | 7164544 | ID=MS.gene93729 |
| chr3.2 | mRNA | 7164544 | 7167184 | 7164544 | ID=MS.gene93729.t1;Parent=MS.gene93729 |
| chr3.2 | exon | 7164544 | 7164672 | 7164544 | ID=MS.gene93729.t1.exon1;Parent=MS.gene93729.t1 |
| chr3.2 | CDS | 7164544 | 7164672 | 7164544 | ID=cds.MS.gene93729.t1;Parent=MS.gene93729.t1 |
| chr3.2 | exon | 7165067 | 7165204 | 7165067 | ID=MS.gene93729.t1.exon2;Parent=MS.gene93729.t1 |
| chr3.2 | CDS | 7165067 | 7165204 | 7165067 | ID=cds.MS.gene93729.t1;Parent=MS.gene93729.t1 |
| chr3.2 | exon | 7166047 | 7166338 | 7166047 | ID=MS.gene93729.t1.exon3;Parent=MS.gene93729.t1 |
| chr3.2 | CDS | 7166047 | 7166338 | 7166047 | ID=cds.MS.gene93729.t1;Parent=MS.gene93729.t1 |
| chr3.2 | exon | 7166468 | 7166703 | 7166468 | ID=MS.gene93729.t1.exon4;Parent=MS.gene93729.t1 |
| chr3.2 | CDS | 7166468 | 7166703 | 7166468 | ID=cds.MS.gene93729.t1;Parent=MS.gene93729.t1 |
| chr3.2 | exon | 7166804 | 7166947 | 7166804 | ID=MS.gene93729.t1.exon5;Parent=MS.gene93729.t1 |
| chr3.2 | CDS | 7166804 | 7166947 | 7166804 | ID=cds.MS.gene93729.t1;Parent=MS.gene93729.t1 |
| chr3.2 | exon | 7167032 | 7167184 | 7167032 | ID=MS.gene93729.t1.exon6;Parent=MS.gene93729.t1 |
| chr3.2 | CDS | 7167032 | 7167184 | 7167032 | ID=cds.MS.gene93729.t1;Parent=MS.gene93729.t1 |
| Gene Sequence |
| Protein sequence |
