Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63929.t1 | XP_024635969.1 | 95.1 | 364 | 17 | 1 | 1 | 363 | 1 | 364 | 7.90E-161 | 576.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63929.t1 | Q84MZ4 | 39.6 | 389 | 182 | 4 | 14 | 350 | 15 | 402 | 5.2e-60 | 233.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63929.t1 | A0A2Z6M9M5 | 76.8 | 384 | 67 | 2 | 1 | 363 | 1 | 383 | 2.9e-136 | 494.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63929.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63929.t1 | MTR_8g039590 | 78.049 | 41 | 8 | 1 | 314 | 354 | 26 | 65 | 2.55e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63929.t1 | AT1G72050 | 54.242 | 389 | 125 | 3 | 14 | 350 | 15 | 402 | 3.19e-146 | 420 |
| MS.gene63929.t1 | AT1G72050 | 54.242 | 389 | 125 | 3 | 14 | 350 | 30 | 417 | 3.90e-146 | 420 |
| MS.gene63929.t1 | AT1G72050 | 53.822 | 314 | 93 | 2 | 88 | 350 | 2 | 314 | 5.48e-117 | 342 |
| MS.gene63929.t1 | AT1G72050 | 51.449 | 276 | 83 | 1 | 88 | 312 | 2 | 277 | 2.39e-97 | 292 |
Find 73 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.068375 | 3.4:-10151404 | None:intergenic |
| AATTGATGTGGGATGTAATT+AGG | 0.159176 | 3.4:-10151469 | None:intergenic |
| AGGATTTAACATGAGCTTTA+AGG | 0.225594 | 3.4:-10153165 | None:intergenic |
| ACCTTTCCACAGCCAATTTC+AGG | 0.226103 | 3.4:-10152923 | None:intergenic |
| TTCAAACCAGCCTCTGATTC+AGG | 0.234528 | 3.4:-10151921 | None:intergenic |
| ATTGATGTGGGATGTAATTA+GGG | 0.319248 | 3.4:-10151468 | None:intergenic |
| AAATGCTTCGGATGAATTGC+TGG | 0.347801 | 3.4:-10153269 | None:intergenic |
| AAGAAGCTGATGAAGAATTC+AGG | 0.351513 | 3.4:+10153670 | MS.gene63929:CDS |
| GCAAACCTCATCCCACAATT+AGG | 0.363573 | 3.4:-10153498 | None:intergenic |
| CAGTTTGTATGTCCTGAAAT+TGG | 0.397925 | 3.4:+10152911 | MS.gene63929:CDS |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 3.4:-10151436 | None:intergenic |
| GTGTGTGGGTTTCCTAATTG+TGG | 0.422735 | 3.4:+10153486 | MS.gene63929:CDS |
| AGAGAACTTGTTATTTGTGC+AGG | 0.423861 | 3.4:+10153779 | MS.gene63929:CDS |
| AAACTGACATTTAAATGCTT+CGG | 0.427935 | 3.4:-10153281 | None:intergenic |
| TTTCTCTTCACCCCTCCCCT+TGG | 0.432023 | 3.4:-10153699 | None:intergenic |
| ATGTTACCTGCGACACTTGT+GGG | 0.436396 | 3.4:+10153197 | MS.gene63929:CDS |
| ATGTAGCCTTGAAGATTGTA+AGG | 0.466096 | 3.4:+10152709 | MS.gene63929:CDS |
| CCACAGTAGAAATGTTGGTT+AGG | 0.467382 | 3.4:+10153730 | MS.gene63929:CDS |
| TGTGTGGGTTTCCTAATTGT+GGG | 0.470341 | 3.4:+10153487 | MS.gene63929:CDS |
| AGCATTTAAATGTCAGTTTG+AGG | 0.474911 | 3.4:+10153285 | MS.gene63929:CDS |
| GCATTTAAATGTCAGTTTGA+GGG | 0.484487 | 3.4:+10153286 | MS.gene63929:CDS |
| CAGGTCAAGGCCAAGGGGAG+GGG | 0.490449 | 3.4:+10153689 | MS.gene63929:CDS |
| TGTCGCAGGTAACATATTGA+TGG | 0.494319 | 3.4:-10153189 | None:intergenic |
| AGCTCGCCTTACAATCTTCA+AGG | 0.496505 | 3.4:-10152715 | None:intergenic |
| CCTATCGAGAATTGCAAAAG+TGG | 0.504025 | 3.4:+10152800 | MS.gene63929:CDS |
| GGACAAAGCAAGAGTTGAAA+CGG | 0.516703 | 3.4:+10151896 | MS.gene63929:CDS |
| TCAGGTCAAGGCCAAGGGGA+GGG | 0.518065 | 3.4:+10153688 | MS.gene63929:CDS |
| CTAACCAACATTTCTACTGT+GGG | 0.523055 | 3.4:-10153729 | None:intergenic |
| TCTTCAAGGCTACATACAAA+TGG | 0.524961 | 3.4:-10152701 | None:intergenic |
| CAAGTAAAGCCGTTTGTGTG+TGG | 0.530955 | 3.4:+10153471 | MS.gene63929:CDS |
| GGTTTCCTAATTGTGGGATG+AGG | 0.531394 | 3.4:+10153493 | MS.gene63929:CDS |
| CTTAGTCCCACAAGTGTCGC+AGG | 0.534089 | 3.4:-10153203 | None:intergenic |
| AACATGAGCTTTAAGGCACT+CGG | 0.538697 | 3.4:-10153158 | None:intergenic |
| AAGAATTCAGGTCAAGGCCA+AGG | 0.544513 | 3.4:+10153682 | MS.gene63929:CDS |
| AAGTAAAGCCGTTTGTGTGT+GGG | 0.550967 | 3.4:+10153472 | MS.gene63929:CDS |
| GTATGTCCTGAAATTGGCTG+TGG | 0.551180 | 3.4:+10152917 | MS.gene63929:CDS |
| CGTCACCTTCTACAACATCA+AGG | 0.557665 | 3.4:+10152761 | MS.gene63929:CDS |
| TTAGGAAACCCACACACAAA+CGG | 0.558755 | 3.4:-10153480 | None:intergenic |
| AGTTCTCTAATTGACTAGGT+GGG | 0.566365 | 3.4:-10153764 | None:intergenic |
| AACCAACATTTCTACTGTGG+GGG | 0.572337 | 3.4:-10153727 | None:intergenic |
| GAACAAATACCTCAAGGGAA+TGG | 0.572995 | 3.4:-10152013 | None:intergenic |
| ACGGAACCTGAATCAGAGGC+TGG | 0.573226 | 3.4:+10151915 | MS.gene63929:CDS |
| GCAGGTAACATATTGATGGC+AGG | 0.575689 | 3.4:-10153185 | None:intergenic |
| CCACATCAATTCTGAACACA+AGG | 0.577487 | 3.4:+10151481 | MS.gene63929:CDS |
| TATGTTACCTGCGACACTTG+TGG | 0.581009 | 3.4:+10153196 | MS.gene63929:CDS |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 3.4:+10151425 | MS.gene63929:CDS |
| TTCAGGTCAAGGCCAAGGGG+AGG | 0.583372 | 3.4:+10153687 | MS.gene63929:CDS |
| AAGTTCTCTAATTGACTAGG+TGG | 0.584481 | 3.4:-10153765 | None:intergenic |
| TAATTGAACAAATACCTCAA+GGG | 0.585198 | 3.4:-10152018 | None:intergenic |
| AGAATTCAGGTCAAGGCCAA+GGG | 0.585579 | 3.4:+10153683 | MS.gene63929:CDS |
| GAAGTGGTGTGCTTAGAGCC+TGG | 0.587135 | 3.4:+10153112 | MS.gene63929:CDS |
| CCTAACCAACATTTCTACTG+TGG | 0.589537 | 3.4:-10153730 | None:intergenic |
| TAAGGCGAGCTACAGAAGAA+AGG | 0.590587 | 3.4:+10152727 | MS.gene63929:CDS |
| TAGGCTTGATACAATTGAAG+TGG | 0.594031 | 3.4:+10153096 | MS.gene63929:CDS |
| CCTTGTGTTCAGAATTGATG+TGG | 0.601822 | 3.4:-10151481 | None:intergenic |
| AACTGAAGAAGAATATGAAG+AGG | 0.602793 | 3.4:+10153227 | MS.gene63929:CDS |
| TTTGAAAGCTAATACTTGTG+AGG | 0.603167 | 3.4:+10151938 | MS.gene63929:CDS |
| TAATCTTCATAAGCATGAGA+AGG | 0.603913 | 3.4:+10153437 | MS.gene63929:CDS |
| TCCTGAAATTGGCTGTGGAA+AGG | 0.608455 | 3.4:+10152922 | MS.gene63929:CDS |
| GTTCTCTAATTGACTAGGTG+GGG | 0.608887 | 3.4:-10153763 | None:intergenic |
| CAGAAGCATGAAGATTCTCA+TGG | 0.611902 | 3.4:+10152968 | MS.gene63929:CDS |
| GTCACCTTCTACAACATCAA+GGG | 0.613362 | 3.4:+10152762 | MS.gene63929:CDS |
| AATTGCTGGCTTCGTGTGTG+CGG | 0.618486 | 3.4:-10153255 | None:intergenic |
| ACCAACATTTCTACTGTGGG+GGG | 0.621015 | 3.4:-10153726 | None:intergenic |
| CTGATGAAGAATTCAGGTCA+AGG | 0.636136 | 3.4:+10153676 | MS.gene63929:CDS |
| AGTTCTACCCCTCCTCGTAG+TGG | 0.640750 | 3.4:+10152875 | MS.gene63929:CDS |
| TGAAACGGAACCTGAATCAG+AGG | 0.646705 | 3.4:+10151911 | MS.gene63929:CDS |
| CTTGTGTTCAGAATTGATGT+GGG | 0.647147 | 3.4:-10151480 | None:intergenic |
| AACAAGTTCTCTAATTGACT+AGG | 0.649660 | 3.4:-10153768 | None:intergenic |
| TAACCAACATTTCTACTGTG+GGG | 0.659300 | 3.4:-10153728 | None:intergenic |
| TATGCAAAGCCATTCCCTTG+AGG | 0.666726 | 3.4:+10152004 | MS.gene63929:CDS |
| GCTAATACTTGTGAGGAATG+TGG | 0.673142 | 3.4:+10151945 | MS.gene63929:CDS |
| GAATTCAGGTCAAGGCCAAG+GGG | 0.693128 | 3.4:+10153684 | MS.gene63929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATCTATAAAATAATTA+TGG | + | chr3.4:10152410-10152429 | MS.gene63929:intron | 10.0% |
| !! | ACTTTCATAAATCTAAATAA+AGG | - | chr3.4:10153038-10153057 | None:intergenic | 15.0% |
| !! | GTTGAAAATTATAATTGTTT+AGG | + | chr3.4:10151744-10151763 | MS.gene63929:intron | 15.0% |
| !! | TAACAAGTGAATTATTATAA+AGG | - | chr3.4:10152222-10152241 | None:intergenic | 15.0% |
| !! | TTAAAAAATGTAACAAACTT+TGG | - | chr3.4:10153385-10153404 | None:intergenic | 15.0% |
| !!! | ACATTTTTTATGTGAATTTT+AGG | + | chr3.4:10151866-10151885 | MS.gene63929:intron | 15.0% |
| !!! | TTGTTGTAAATATTTGTTAT+TGG | + | chr3.4:10152164-10152183 | MS.gene63929:intron | 15.0% |
| !!! | TTTTCAGTTTTATGATTTTA+GGG | + | chr3.4:10151719-10151738 | MS.gene63929:intron | 15.0% |
| !! | AAATGAACAAATTGAGTATT+AGG | + | chr3.4:10151574-10151593 | MS.gene63929:intron | 20.0% |
| !! | AATGAACAAATTGAGTATTA+GGG | + | chr3.4:10151575-10151594 | MS.gene63929:intron | 20.0% |
| !! | CAAGATTTACTTCATATATA+GGG | + | chr3.4:10153639-10153658 | MS.gene63929:intron | 20.0% |
| !! | TCAAGATTTACTTCATATAT+AGG | + | chr3.4:10153638-10153657 | MS.gene63929:intron | 20.0% |
| !! | TCTAGAAAAGTAAAACAATT+AGG | - | chr3.4:10151635-10151654 | None:intergenic | 20.0% |
| !! | TTGTGTATAATTGTTTAATG+TGG | + | chr3.4:10152093-10152112 | MS.gene63929:intron | 20.0% |
| !!! | ATCTATAGTTTTAACCAAAT+GGG | + | chr3.4:10151532-10151551 | MS.gene63929:intron | 20.0% |
| !!! | ATTTTTTATACCACAAGAAT+AGG | - | chr3.4:10153597-10153616 | None:intergenic | 20.0% |
| !!! | ATTTTTTGAAGAAAATTGAG+TGG | - | chr3.4:10151558-10151577 | None:intergenic | 20.0% |
| !!! | CATTTTTTAACTTCTAATTG+TGG | + | chr3.4:10153395-10153414 | MS.gene63929:intron | 20.0% |
| !!! | CTTTTCAGTTTTATGATTTT+AGG | + | chr3.4:10151718-10151737 | MS.gene63929:intron | 20.0% |
| !!! | TTTTTTATGTGAATTTTAGG+AGG | + | chr3.4:10151869-10151888 | MS.gene63929:intron | 20.0% |
| ! | AAACTGACATTTAAATGCTT+CGG | - | chr3.4:10153284-10153303 | None:intergenic | 25.0% |
| ! | AGTTGACAAAATTGAAAGAA+AGG | - | chr3.4:10153001-10153020 | None:intergenic | 25.0% |
| ! | ATAATTGAACAAATACCTCA+AGG | - | chr3.4:10152022-10152041 | None:intergenic | 25.0% |
| ! | GTTCAATTATAAACATCACA+TGG | + | chr3.4:10152032-10152051 | MS.gene63929:intron | 25.0% |
| ! | TAATTGAACAAATACCTCAA+GGG | - | chr3.4:10152021-10152040 | None:intergenic | 25.0% |
| ! | TTATGCAATTATAGCTTCTA+TGG | + | chr3.4:10151797-10151816 | MS.gene63929:intron | 25.0% |
| !! | CACTTGTTAATTTATTCATG+AGG | + | chr3.4:10152233-10152252 | MS.gene63929:intron | 25.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | - | chr3.4:10151406-10151425 | None:intergenic | 25.0% |
| !!! | GATCTATAGTTTTAACCAAA+TGG | + | chr3.4:10151531-10151550 | MS.gene63929:intron | 25.0% |
| !!! | TATTAGGGTTTTGTTTGTTA+AGG | + | chr3.4:10151590-10151609 | MS.gene63929:intron | 25.0% |
| AAAACCTTTATTCTGCAGTT+AGG | + | chr3.4:10153077-10153096 | MS.gene63929:intron | 30.0% | |
| AACAAGTTCTCTAATTGACT+AGG | - | chr3.4:10153771-10153790 | None:intergenic | 30.0% | |
| AACTGAAGAAGAATATGAAG+AGG | + | chr3.4:10153227-10153246 | MS.gene63929:CDS | 30.0% | |
| AATTGATGTGGGATGTAATT+AGG | - | chr3.4:10151472-10151491 | None:intergenic | 30.0% | |
| AGCATTTAAATGTCAGTTTG+AGG | + | chr3.4:10153285-10153304 | MS.gene63929:CDS | 30.0% | |
| AGGATTTAACATGAGCTTTA+AGG | - | chr3.4:10153168-10153187 | None:intergenic | 30.0% | |
| ATCTACAGTTTAAACCTACT+GGG | + | chr3.4:10151668-10151687 | MS.gene63929:intron | 30.0% | |
| ATTGATGTGGGATGTAATTA+GGG | - | chr3.4:10151471-10151490 | None:intergenic | 30.0% | |
| GCATTTAAATGTCAGTTTGA+GGG | + | chr3.4:10153286-10153305 | MS.gene63929:CDS | 30.0% | |
| TAATCTTCATAAGCATGAGA+AGG | + | chr3.4:10153437-10153456 | MS.gene63929:CDS | 30.0% | |
| TATCTACAGTTTAAACCTAC+TGG | + | chr3.4:10151667-10151686 | MS.gene63929:intron | 30.0% | |
| TATGTGTGATTGATTGTGTA+TGG | + | chr3.4:10151825-10151844 | MS.gene63929:intron | 30.0% | |
| TTTGAAAGCTAATACTTGTG+AGG | + | chr3.4:10151938-10151957 | MS.gene63929:CDS | 30.0% | |
| ! | ACATCGTTTGATAGTTTGTA+TGG | + | chr3.4:10152261-10152280 | MS.gene63929:intron | 30.0% |
| ! | ACATTATAGTGTGAAAGCAT+TGG | + | chr3.4:10152433-10152452 | MS.gene63929:intron | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | - | chr3.4:10151407-10151426 | None:intergenic | 30.0% |
| ! | GATATGCATGTTTCTATGTT+TGG | + | chr3.4:10152298-10152317 | MS.gene63929:intron | 30.0% |
| ! | TCACTCATTCATACTTTTCA+AGG | - | chr3.4:10152344-10152363 | None:intergenic | 30.0% |
| !! | TTTCTTGTGATTTGTTACAG+AGG | + | chr3.4:10152678-10152697 | MS.gene63929:intron | 30.0% |
| !!! | ATTTTGGGATTTCATCGTTT+TGG | - | chr3.4:10151391-10151410 | None:intergenic | 30.0% |
| !!! | GGATGTAATTAGGGTTTTTT+TGG | - | chr3.4:10151462-10151481 | None:intergenic | 30.0% |
| !!! | GGTTTTGTTTGTTAAGGTTT+AGG | + | chr3.4:10151596-10151615 | MS.gene63929:intron | 30.0% |
| AACCTGATACTATTTCACCA+AGG | - | chr3.4:10152503-10152522 | None:intergenic | 35.0% | |
| AAGAAGCTGATGAAGAATTC+AGG | + | chr3.4:10153670-10153689 | MS.gene63929:CDS | 35.0% | |
| AAGTTCTCTAATTGACTAGG+TGG | - | chr3.4:10153768-10153787 | None:intergenic | 35.0% | |
| AGTTCTCTAATTGACTAGGT+GGG | - | chr3.4:10153767-10153786 | None:intergenic | 35.0% | |
| CAGTTTGTATGTCCTGAAAT+TGG | + | chr3.4:10152911-10152930 | MS.gene63929:CDS | 35.0% | |
| CATATTGGAGTTCTTTGTCT+GGG | - | chr3.4:10152461-10152480 | None:intergenic | 35.0% | |
| CTAACCAACATTTCTACTGT+GGG | - | chr3.4:10153732-10153751 | None:intergenic | 35.0% | |
| CTTGTGTTCAGAATTGATGT+GGG | - | chr3.4:10151483-10151502 | None:intergenic | 35.0% | |
| GTGAAAAATTTCATGCAACC+AGG | - | chr3.4:10153133-10153152 | None:intergenic | 35.0% | |
| TAACCAACATTTCTACTGTG+GGG | - | chr3.4:10153731-10153750 | None:intergenic | 35.0% | |
| TAGGCTTGATACAATTGAAG+TGG | + | chr3.4:10153096-10153115 | MS.gene63929:CDS | 35.0% | |
| TATGCAATGCCAATGTATGA+TGG | - | chr3.4:10153348-10153367 | None:intergenic | 35.0% | |
| TCTTCAAGGCTACATACAAA+TGG | - | chr3.4:10152704-10152723 | None:intergenic | 35.0% | |
| TGGTGAAATAGTATCAGGTT+GGG | + | chr3.4:10152503-10152522 | MS.gene63929:intron | 35.0% | |
| TTATACCACAAGAATAGGCA+TGG | - | chr3.4:10153592-10153611 | None:intergenic | 35.0% | |
| TTGGTGAAATAGTATCAGGT+TGG | + | chr3.4:10152502-10152521 | MS.gene63929:intron | 35.0% | |
| ! | AAGGGCAAAAAGATGTTTTG+CGG | - | chr3.4:10153556-10153575 | None:intergenic | 35.0% |
| ! | ATGTAGCCTTGAAGATTGTA+AGG | + | chr3.4:10152709-10152728 | MS.gene63929:CDS | 35.0% |
| ! | CATGTTTCTATGTTTGGTGA+TGG | + | chr3.4:10152304-10152323 | MS.gene63929:intron | 35.0% |
| ! | TTTTCCCTTGATGTTGTAGA+AGG | - | chr3.4:10152769-10152788 | None:intergenic | 35.0% |
| !! | AGAGAACTTGTTATTTGTGC+AGG | + | chr3.4:10153779-10153798 | MS.gene63929:CDS | 35.0% |
| !! | ATGTGAATTTTAGGAGGAGA+TGG | + | chr3.4:10151875-10151894 | MS.gene63929:intron | 35.0% |
| !! | CTGAAGATACATGTTTTTGC+AGG | + | chr3.4:10152365-10152384 | MS.gene63929:intron | 35.0% |
| AAATGCTTCGGATGAATTGC+TGG | - | chr3.4:10153272-10153291 | None:intergenic | 40.0% | |
| AACCAACATTTCTACTGTGG+GGG | - | chr3.4:10153730-10153749 | None:intergenic | 40.0% | |
| AAGTAAAGCCGTTTGTGTGT+GGG | + | chr3.4:10153472-10153491 | MS.gene63929:CDS | 40.0% | |
| AATCCTTGATGAAGCTTCTC+AGG | - | chr3.4:10152535-10152554 | None:intergenic | 40.0% | |
| AGAAAATTGAGTGGCCCATT+TGG | - | chr3.4:10151549-10151568 | None:intergenic | 40.0% | |
| ATACCTCCTCCATCATACAT+TGG | + | chr3.4:10153336-10153355 | MS.gene63929:intron | 40.0% | |
| ATCTACAGATACCGCAGAAT+TGG | - | chr3.4:10151439-10151458 | None:intergenic | 40.0% | |
| CAAGCCTAACTGCAGAATAA+AGG | - | chr3.4:10153084-10153103 | None:intergenic | 40.0% | |
| CCACATCAATTCTGAACACA+AGG | + | chr3.4:10151481-10151500 | MS.gene63929:CDS | 40.0% | |
| CCTAACCAACATTTCTACTG+TGG | - | chr3.4:10153733-10153752 | None:intergenic | 40.0% | |
| CCTATCGAGAATTGCAAAAG+TGG | + | chr3.4:10152800-10152819 | MS.gene63929:CDS | 40.0% | |
| CCTTGTGTTCAGAATTGATG+TGG | - | chr3.4:10151484-10151503 | None:intergenic | 40.0% | |
| CTGATGAAGAATTCAGGTCA+AGG | + | chr3.4:10153676-10153695 | MS.gene63929:CDS | 40.0% | |
| GAACAAATACCTCAAGGGAA+TGG | - | chr3.4:10152016-10152035 | None:intergenic | 40.0% | |
| GCATATTGGAGTTCTTTGTC+TGG | - | chr3.4:10152462-10152481 | None:intergenic | 40.0% | |
| GCTAATACTTGTGAGGAATG+TGG | + | chr3.4:10151945-10151964 | MS.gene63929:CDS | 40.0% | |
| GGACAAAGCAAGAGTTGAAA+CGG | + | chr3.4:10151896-10151915 | MS.gene63929:CDS | 40.0% | |
| GTCACCTTCTACAACATCAA+GGG | + | chr3.4:10152762-10152781 | MS.gene63929:CDS | 40.0% | |
| GTTCTCTAATTGACTAGGTG+GGG | - | chr3.4:10153766-10153785 | None:intergenic | 40.0% | |
| TAGAAATTGAGTGACCCAGT+AGG | - | chr3.4:10151685-10151704 | None:intergenic | 40.0% | |
| TGTCGCAGGTAACATATTGA+TGG | - | chr3.4:10153192-10153211 | None:intergenic | 40.0% | |
| TGTGTGGGTTTCCTAATTGT+GGG | + | chr3.4:10153487-10153506 | MS.gene63929:CDS | 40.0% | |
| TTAGGAAACCCACACACAAA+CGG | - | chr3.4:10153483-10153502 | None:intergenic | 40.0% | |
| ! | CAGAAGCATGAAGATTCTCA+TGG | + | chr3.4:10152968-10152987 | MS.gene63929:CDS | 40.0% |
| ! | CCACAGTAGAAATGTTGGTT+AGG | + | chr3.4:10153730-10153749 | MS.gene63929:CDS | 40.0% |
| ! | CTTCATCAAGGATTTTGCCT+CGG | + | chr3.4:10152541-10152560 | MS.gene63929:intron | 40.0% |
| ! | TTCTGATTTTCACCACTACG+AGG | - | chr3.4:10152890-10152909 | None:intergenic | 40.0% |
| !! | AACATGAGCTTTAAGGCACT+CGG | - | chr3.4:10153161-10153180 | None:intergenic | 40.0% |
| !! | CCACTTTTGCAATTCTCGAT+AGG | - | chr3.4:10152803-10152822 | None:intergenic | 40.0% |
| AAAGAACTCCAATATGCGCG+AGG | + | chr3.4:10152465-10152484 | MS.gene63929:intron | 45.0% | |
| AAGAATTCAGGTCAAGGCCA+AGG | + | chr3.4:10153682-10153701 | MS.gene63929:CDS | 45.0% | |
| ACCAACATTTCTACTGTGGG+GGG | - | chr3.4:10153729-10153748 | None:intergenic | 45.0% | |
| ACCACAAGAATAGGCATGGA+CGG | - | chr3.4:10153588-10153607 | None:intergenic | 45.0% | |
| ACCTTTCCACAGCCAATTTC+AGG | - | chr3.4:10152926-10152945 | None:intergenic | 45.0% | |
| AGAATTCAGGTCAAGGCCAA+GGG | + | chr3.4:10153683-10153702 | MS.gene63929:CDS | 45.0% | |
| AGCTCGCCTTACAATCTTCA+AGG | - | chr3.4:10152718-10152737 | None:intergenic | 45.0% | |
| ATGTTACCTGCGACACTTGT+GGG | + | chr3.4:10153197-10153216 | MS.gene63929:CDS | 45.0% | |
| CAAGTAAAGCCGTTTGTGTG+TGG | + | chr3.4:10153471-10153490 | MS.gene63929:CDS | 45.0% | |
| CATGGACGGAGAACTTACAA+GGG | - | chr3.4:10153574-10153593 | None:intergenic | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | + | chr3.4:10151425-10151444 | MS.gene63929:CDS | 45.0% | |
| CGTCACCTTCTACAACATCA+AGG | + | chr3.4:10152761-10152780 | MS.gene63929:CDS | 45.0% | |
| GCAAACCTCATCCCACAATT+AGG | - | chr3.4:10153501-10153520 | None:intergenic | 45.0% | |
| GCAATGCCAATGTATGATGG+AGG | - | chr3.4:10153345-10153364 | None:intergenic | 45.0% | |
| GGCCTTGGTGAAATAGTATC+AGG | + | chr3.4:10152498-10152517 | MS.gene63929:intron | 45.0% | |
| GGTTTCCTAATTGTGGGATG+AGG | + | chr3.4:10153493-10153512 | MS.gene63929:CDS | 45.0% | |
| GTATGTCCTGAAATTGGCTG+TGG | + | chr3.4:10152917-10152936 | MS.gene63929:CDS | 45.0% | |
| GTCACGCTCAATTCAAAACG+AGG | + | chr3.4:10152563-10152582 | MS.gene63929:intron | 45.0% | |
| GTGTGTGGGTTTCCTAATTG+TGG | + | chr3.4:10153486-10153505 | MS.gene63929:CDS | 45.0% | |
| TAAGGCGAGCTACAGAAGAA+AGG | + | chr3.4:10152727-10152746 | MS.gene63929:CDS | 45.0% | |
| TATGCAAAGCCATTCCCTTG+AGG | + | chr3.4:10152004-10152023 | MS.gene63929:CDS | 45.0% | |
| TATGTTACCTGCGACACTTG+TGG | + | chr3.4:10153196-10153215 | MS.gene63929:CDS | 45.0% | |
| TCCTGAAATTGGCTGTGGAA+AGG | + | chr3.4:10152922-10152941 | MS.gene63929:CDS | 45.0% | |
| TGAAACGGAACCTGAATCAG+AGG | + | chr3.4:10151911-10151930 | MS.gene63929:CDS | 45.0% | |
| TTCAAACCAGCCTCTGATTC+AGG | - | chr3.4:10151924-10151943 | None:intergenic | 45.0% | |
| ! | ATGCCAATGTATGATGGAGG+AGG | - | chr3.4:10153342-10153361 | None:intergenic | 45.0% |
| ! | ATTTTCACCACTACGAGGAG+GGG | - | chr3.4:10152885-10152904 | None:intergenic | 45.0% |
| ! | GATTTTCACCACTACGAGGA+GGG | - | chr3.4:10152886-10152905 | None:intergenic | 45.0% |
| ! | GCAGGTAACATATTGATGGC+AGG | - | chr3.4:10153188-10153207 | None:intergenic | 45.0% |
| ! | TGATTTTCACCACTACGAGG+AGG | - | chr3.4:10152887-10152906 | None:intergenic | 45.0% |
| ! | TTTTGAATTGAGCGTGACCG+AGG | - | chr3.4:10152561-10152580 | None:intergenic | 45.0% |
| CCTCCTGAGAAGCTTCATCA+AGG | + | chr3.4:10152529-10152548 | MS.gene63929:intron | 50.0% | |
| CCTTGATGAAGCTTCTCAGG+AGG | - | chr3.4:10152532-10152551 | None:intergenic | 50.0% | |
| GAATTCAGGTCAAGGCCAAG+GGG | + | chr3.4:10153684-10153703 | MS.gene63929:CDS | 50.0% | |
| GCATGGACGGAGAACTTACA+AGG | - | chr3.4:10153575-10153594 | None:intergenic | 50.0% | |
| TCCCCCCACAGTAGAAATGT+TGG | + | chr3.4:10153725-10153744 | MS.gene63929:CDS | 50.0% | |
| TCCGTCCATGCCTATTCTTG+TGG | + | chr3.4:10153584-10153603 | MS.gene63929:intron | 50.0% | |
| !! | AATTGCTGGCTTCGTGTGTG+CGG | - | chr3.4:10153258-10153277 | None:intergenic | 50.0% |
| ACGGAACCTGAATCAGAGGC+TGG | + | chr3.4:10151915-10151934 | MS.gene63929:CDS | 55.0% | |
| AGTTCTACCCCTCCTCGTAG+TGG | + | chr3.4:10152875-10152894 | MS.gene63929:CDS | 55.0% | |
| GAAGTGGTGTGCTTAGAGCC+TGG | + | chr3.4:10153112-10153131 | MS.gene63929:CDS | 55.0% | |
| TTTCTCTTCACCCCTCCCCT+TGG | - | chr3.4:10153702-10153721 | None:intergenic | 55.0% | |
| ! | CTTAGTCCCACAAGTGTCGC+AGG | - | chr3.4:10153206-10153225 | None:intergenic | 55.0% |
| GCGTGATGCCTCGCGCATAT+TGG | - | chr3.4:10152476-10152495 | None:intergenic | 60.0% | |
| TCAGGTCAAGGCCAAGGGGA+GGG | + | chr3.4:10153688-10153707 | MS.gene63929:CDS | 60.0% | |
| TTCAGGTCAAGGCCAAGGGG+AGG | + | chr3.4:10153687-10153706 | MS.gene63929:CDS | 60.0% | |
| ! | TATGCGCGAGGCATCACGCT+TGG | + | chr3.4:10152477-10152496 | MS.gene63929:intron | 60.0% |
| CAGGTCAAGGCCAAGGGGAG+GGG | + | chr3.4:10153689-10153708 | MS.gene63929:CDS | 65.0% | |
| ! | CGAGGCATCACGCTTGGCCT+TGG | + | chr3.4:10152483-10152502 | MS.gene63929:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 10151374 | 10153812 | 10151374 | ID=MS.gene63929 |
| chr3.4 | mRNA | 10151374 | 10153812 | 10151374 | ID=MS.gene63929.t1;Parent=MS.gene63929 |
| chr3.4 | exon | 10151374 | 10151502 | 10151374 | ID=MS.gene63929.t1.exon1;Parent=MS.gene63929.t1 |
| chr3.4 | CDS | 10151374 | 10151502 | 10151374 | ID=cds.MS.gene63929.t1;Parent=MS.gene63929.t1 |
| chr3.4 | exon | 10151888 | 10152025 | 10151888 | ID=MS.gene63929.t1.exon2;Parent=MS.gene63929.t1 |
| chr3.4 | CDS | 10151888 | 10152025 | 10151888 | ID=cds.MS.gene63929.t1;Parent=MS.gene63929.t1 |
| chr3.4 | exon | 10152698 | 10152989 | 10152698 | ID=MS.gene63929.t1.exon3;Parent=MS.gene63929.t1 |
| chr3.4 | CDS | 10152698 | 10152989 | 10152698 | ID=cds.MS.gene63929.t1;Parent=MS.gene63929.t1 |
| chr3.4 | exon | 10153095 | 10153330 | 10153095 | ID=MS.gene63929.t1.exon4;Parent=MS.gene63929.t1 |
| chr3.4 | CDS | 10153095 | 10153330 | 10153095 | ID=cds.MS.gene63929.t1;Parent=MS.gene63929.t1 |
| chr3.4 | exon | 10153432 | 10153575 | 10153432 | ID=MS.gene63929.t1.exon5;Parent=MS.gene63929.t1 |
| chr3.4 | CDS | 10153432 | 10153575 | 10153432 | ID=cds.MS.gene63929.t1;Parent=MS.gene63929.t1 |
| chr3.4 | exon | 10153660 | 10153812 | 10153660 | ID=MS.gene63929.t1.exon6;Parent=MS.gene63929.t1 |
| chr3.4 | CDS | 10153660 | 10153812 | 10153660 | ID=cds.MS.gene63929.t1;Parent=MS.gene63929.t1 |
| Gene Sequence |
| Protein sequence |
