AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61079

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61079.t1 MTR_8g039590 85.714 49 5 1 333 379 26 74 1.46e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61079.t1 AT1G72050 54.731 391 118 3 34 368 30 417 1.15e-143 414
MS.gene61079.t1 AT1G72050 54.731 391 118 3 34 368 15 402 1.37e-143 414
MS.gene61079.t1 AT1G72050 52.396 313 98 1 107 368 2 314 5.08e-108 320
MS.gene61079.t1 AT1G72050 50.000 276 87 1 107 331 2 277 1.66e-89 273

Find 82 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTTATGTGTGGCTTTC+CGG 0.141577 8.2:+60566449 MS.gene61079:CDS
GCCTTCCCACAGCCAGTTTC+CGG 0.199994 8.2:-60565630 None:intergenic
ACAATTCAGGTCAAGGAATA+TGG 0.231171 8.2:+60566650 MS.gene61079:CDS
GGTGTTTCATTGTGATTATA+AGG 0.329936 8.2:+60566013 MS.gene61079:CDS
AAGAAACTGATGAACAATTC+AGG 0.331946 8.2:+60566637 MS.gene61079:CDS
CGTCTAATGTCTCTGAAAAT+AGG 0.343462 8.2:-60562945 None:intergenic
ATCCGGAAAGCCACACATAA+AGG 0.343962 8.2:-60566451 None:intergenic
CCTTCCCACAGCCAGTTTCC+GGG 0.360391 8.2:-60565629 None:intergenic
TAATGTTTCTTAGGTAGAAA+TGG 0.365582 8.2:+60564609 MS.gene61079:intron
AGGATTTAGTGTGTGCTCTA+AGG 0.367395 8.2:-60565893 None:intergenic
TCATCAATAGTACAAATATA+TGG 0.375996 8.2:-60565408 None:intergenic
CAGCACGTGTGCCCGGAAAC+TGG 0.376933 8.2:+60565618 MS.gene61079:CDS
TTGTACTATTGATGATTGTC+AGG 0.388063 8.2:+60565416 MS.gene61079:CDS
AGAGGTAATTAAGGTCTTCT+TGG 0.389367 8.2:-60563000 None:intergenic
ATTGATGTGAGAGGTAATTA+AGG 0.392920 8.2:-60563009 None:intergenic
GTCAATACTGTGGCATCTCC+AGG 0.399551 8.2:+60562976 MS.gene61079:CDS
CACCTCCGCAAGCATGAAAC+TGG 0.408795 8.2:+60565978 MS.gene61079:CDS
TAAGCAACTCTAGTTGAGTT+GGG 0.414283 8.2:-60566731 None:intergenic
TAAAGGGTTTATCTTGCAAA+TGG 0.421702 8.2:-60566434 None:intergenic
GTACAAAATTGAATACTTGT+AGG 0.431705 8.2:+60564668 MS.gene61079:CDS
TCCGGAAAGCCACACATAAA+GGG 0.445795 8.2:-60566450 None:intergenic
TCGTGGTTGCAATTCTCAAT+TGG 0.456821 8.2:-60565507 None:intergenic
CTACAGTTGAAATGTTGGTT+AGG 0.459027 8.2:+60566694 MS.gene61079:CDS
GACTTTGCATATGCTGCAAT+AGG 0.471700 8.2:-60564723 None:intergenic
GAATCATCCATCCCTGTGTT+CGG 0.472511 8.2:-60562903 None:intergenic
AAGTCTCACAGTTCACATAC+TGG 0.472897 8.2:-60565920 None:intergenic
ATAAGCAACTCTAGTTGAGT+TGG 0.481173 8.2:-60566732 None:intergenic
TCAGAAGCAGCACGTGTGCC+CGG 0.481855 8.2:+60565611 MS.gene61079:CDS
CGTCATCTTCTACAACATGA+TGG 0.491419 8.2:+60565468 MS.gene61079:CDS
ATGTGAACTGTGAGACTTGT+GGG 0.494220 8.2:+60565925 MS.gene61079:CDS
CAATTCAGGTCAAGGAATAT+GGG 0.495529 8.2:+60566651 MS.gene61079:CDS
GCAAATCTCATGCCACAATC+CGG 0.501297 8.2:-60566468 None:intergenic
GGAATTTCTTACACTTGAGA+AGG 0.505878 8.2:-60566048 None:intergenic
TACAAAATTGAATACTTGTA+GGG 0.508830 8.2:+60564669 MS.gene61079:CDS
TGAAAGAGATCAAGAAGCAC+AGG 0.510409 8.2:+60564645 MS.gene61079:CDS
GTAAAACTCTTCATACAGCC+AGG 0.516686 8.2:-60565858 None:intergenic
TCAACTAGAGTTGCTTATGA+AGG 0.516835 8.2:+60566737 MS.gene61079:CDS
GAGGTAGTGTGCTTATACCC+TGG 0.518727 8.2:+60565840 MS.gene61079:CDS
GTCATCTTCTACAACATGAT+GGG 0.523277 8.2:+60565469 MS.gene61079:CDS
GTAGAAGATGACGATTCAAA+TGG 0.524054 8.2:-60565458 None:intergenic
ATGTGTGGCTTTCCGGATTG+TGG 0.527229 8.2:+60566456 MS.gene61079:CDS
AACTACCAGTTTCATGCTTG+CGG 0.529209 8.2:-60565983 None:intergenic
CTAACCAACATTTCAACTGT+AGG 0.530712 8.2:-60566693 None:intergenic
TAATCTTTGTAAGCATGTAA+AGG 0.532789 8.2:+60566407 MS.gene61079:CDS
ATATGCTGCAATAGGTAGGC+AGG 0.535542 8.2:-60564715 None:intergenic
CCCGGAAACTGGCTGTGGGA+AGG 0.537986 8.2:+60565629 MS.gene61079:CDS
GCATTTCGTGATTGCTTCTG+CGG 0.544786 8.2:-60562881 None:intergenic
GAGGGTAAAGACATGCGAAC+CGG 0.547091 8.2:-60566523 None:intergenic
GTGTGCCCGGAAACTGGCTG+TGG 0.547157 8.2:+60565624 MS.gene61079:CDS
AATTAAGGTCTTCTTGGACC+TGG 0.548998 8.2:-60562994 None:intergenic
GTGTCCTACAGTTGAAATGT+TGG 0.550000 8.2:+60566689 MS.gene61079:CDS
AGTTAAGCTGGAATCAATAG+AGG 0.553788 8.2:+60565821 MS.gene61079:intron
CAAGATAAACCCTTTATGTG+TGG 0.564425 8.2:+60566441 MS.gene61079:CDS
ATCACGAAATGCCGAACACA+GGG 0.569190 8.2:+60562892 MS.gene61079:CDS
TCAGGCAAGTTACAGAAGAA+AGG 0.570386 8.2:+60565434 MS.gene61079:CDS
AATCACGAAATGCCGAACAC+AGG 0.575106 8.2:+60562891 MS.gene61079:CDS
CTGATGAACAATTCAGGTCA+AGG 0.577968 8.2:+60566643 MS.gene61079:CDS
ACAGTTCACATACTGGTGGC+AGG 0.578620 8.2:-60565913 None:intergenic
AAGCAACTCTAGTTGAGTTG+GGG 0.578730 8.2:-60566730 None:intergenic
TTCCCTTCAATGAAAAGTCG+TGG 0.581276 8.2:-60565524 None:intergenic
CAACTAGAGTTGCTTATGAA+GGG 0.588443 8.2:+60566738 MS.gene61079:CDS
CGAAATGCCGAACACAGGGA+TGG 0.600088 8.2:+60562896 MS.gene61079:CDS
TTTGCTTCGAGTTCTTCCGA+TGG 0.602164 8.2:-60562858 None:intergenic
TTGCATATGCTGCAATAGGT+AGG 0.603520 8.2:-60564719 None:intergenic
AAACATGACAAGACATGTCA+AGG 0.604864 8.2:+60565545 MS.gene61079:CDS
GAGAAGCACAAAGATTCTCA+TGG 0.608696 8.2:+60565675 MS.gene61079:CDS
TAACAAACTCAGAATGCCAT+CGG 0.620391 8.2:+60562842 None:intergenic
TGTCAAGGAGTTTCATAACA+AGG 0.621209 8.2:+60565560 MS.gene61079:CDS
TACCAGTTTCATGCTTGCGG+AGG 0.627576 8.2:-60565980 None:intergenic
TTCAGGTCAAGGAATATGGG+AGG 0.631501 8.2:+60566654 MS.gene61079:CDS
AGCAACTCTAGTTGAGTTGG+GGG 0.634857 8.2:-60566729 None:intergenic
TCATCTTCTACAACATGATG+GGG 0.636389 8.2:+60565470 MS.gene61079:CDS
TATGCAAAGTCATTCACTTG+AGG 0.637403 8.2:+60564735 MS.gene61079:CDS
TTGAATACTTGTAGGGAATG+TGG 0.640544 8.2:+60564676 MS.gene61079:CDS
TAAAACTCTTCATACAGCCA+GGG 0.647065 8.2:-60565857 None:intergenic
TGAAACTGGTAGTTCATCAG+AGG 0.652430 8.2:+60565992 MS.gene61079:CDS
TCAGGTCAAGGAATATGGGA+GGG 0.653102 8.2:+60566655 MS.gene61079:CDS
TGTGCCCGGAAACTGGCTGT+GGG 0.676199 8.2:+60565625 MS.gene61079:CDS
TCTCACAGTTCACATACTGG+TGG 0.715768 8.2:-60565917 None:intergenic
GAAAGAGATCAAGAAGCACA+GGG 0.736934 8.2:+60564646 MS.gene61079:CDS
TATGTGAACTGTGAGACTTG+TGG 0.750818 8.2:+60565924 MS.gene61079:CDS
ATGATGAGAATTGATGTGAG+AGG 0.763772 8.2:-60563018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATAATGAGATAAAT+CGG - chr8.2:60564809-60564828 None:intergenic 10.0%
!! GTATAGATAAAAAAAAAATT+GGG + chr8.2:60564910-60564929 MS.gene61079:intron 10.0%
!! TGTATAGATAAAAAAAAAAT+TGG + chr8.2:60564909-60564928 MS.gene61079:intron 10.0%
!! TATCTCATTATATATTTCTT+TGG + chr8.2:60564812-60564831 MS.gene61079:intron 15.0%
!! TATTTATACTATTATCCATT+AGG + chr8.2:60563550-60563569 MS.gene61079:intron 15.0%
!!! CTTATTAAGTTATTAGTTTA+TGG + chr8.2:60565346-60565365 MS.gene61079:intron 15.0%
!!! TTTTTTGAAATTCATTTCAA+TGG + chr8.2:60564866-60564885 MS.gene61079:intron 15.0%
!! ATACTGAATTTACAAAATAG+AGG - chr8.2:60564376-60564395 None:intergenic 20.0%
!! TAAATATGATTTGATATCTC+CGG + chr8.2:60563264-60563283 MS.gene61079:intron 20.0%
!! TAATATAACAGATTCTTTAC+AGG - chr8.2:60566563-60566582 None:intergenic 20.0%
!! TACAAAATTGAATACTTGTA+GGG + chr8.2:60564669-60564688 MS.gene61079:CDS 20.0%
!! TACTGAATTTACAAAATAGA+GGG - chr8.2:60564375-60564394 None:intergenic 20.0%
!! TCATCAATAGTACAAATATA+TGG - chr8.2:60565411-60565430 None:intergenic 20.0%
!! TTATAATTAGTTCATGCTTT+AGG + chr8.2:60564936-60564955 MS.gene61079:intron 20.0%
!! TTATCTATACAGAAATTTCA+AGG - chr8.2:60564900-60564919 None:intergenic 20.0%
!!! CAGCAATTTGTATTTTATTT+TGG - chr8.2:60563163-60563182 None:intergenic 20.0%
!!! CTTTAGATTTTGTTAAAATC+TGG + chr8.2:60564962-60564981 MS.gene61079:intron 20.0%
!!! GTTTTCAAAACTCTAAATAA+AGG - chr8.2:60565764-60565783 None:intergenic 20.0%
!!! TATGTTTTTCTATCAAAATG+TGG + chr8.2:60563680-60563699 MS.gene61079:intron 20.0%
!!! TTTACATTTTTCACATTATC+TGG + chr8.2:60563217-60563236 MS.gene61079:intron 20.0%
!!! TTTTGAAAACATGTTAAGTA+CGG + chr8.2:60565774-60565793 MS.gene61079:intron 20.0%
! AAAGTAATTGTTAGGAAACA+TGG + chr8.2:60563424-60563443 MS.gene61079:intron 25.0%
! AAATTCACAAATCATGTCAA+AGG - chr8.2:60564057-60564076 None:intergenic 25.0%
! AAGAGCGATTATAATTCTAA+TGG + chr8.2:60564570-60564589 MS.gene61079:intron 25.0%
! AATTTACAAAATAGAGGGAA+AGG - chr8.2:60564370-60564389 None:intergenic 25.0%
! AGTGTTTAGAAACAAATTGA+AGG - chr8.2:60563067-60563086 None:intergenic 25.0%
! CAAGATAAACTCATCAAAAT+TGG + chr8.2:60566595-60566614 MS.gene61079:intron 25.0%
! GTAAGTGTAATTGTATACAA+TGG + chr8.2:60563628-60563647 MS.gene61079:intron 25.0%
! GTACAAAATTGAATACTTGT+AGG + chr8.2:60564668-60564687 MS.gene61079:CDS 25.0%
! GTTGACTAATAATGTTTCTT+AGG + chr8.2:60564600-60564619 MS.gene61079:intron 25.0%
! TAAAGATTCATGCTTACAAA+TGG - chr8.2:60564172-60564191 None:intergenic 25.0%
! TAATATCAACAAGTGTTACA+GGG - chr8.2:60565060-60565079 None:intergenic 25.0%
! TAATCGTCAAAACTTAATGT+GGG + chr8.2:60564278-60564297 MS.gene61079:intron 25.0%
! TAATCTTTGTAAGCATGTAA+AGG + chr8.2:60566407-60566426 MS.gene61079:CDS 25.0%
! TAATGTTTCTTAGGTAGAAA+TGG + chr8.2:60564609-60564628 MS.gene61079:intron 25.0%
! TATTGGAAATATAGGATTAG+TGG - chr8.2:60563585-60563604 None:intergenic 25.0%
! TCAAATTCAGCTATATAACA+AGG + chr8.2:60566173-60566192 MS.gene61079:intron 25.0%
! TGGATTACTATTGGAAATAT+AGG - chr8.2:60563593-60563612 None:intergenic 25.0%
! TTAATCGTCAAAACTTAATG+TGG + chr8.2:60564277-60564296 MS.gene61079:intron 25.0%
! TTAGAAACAAATTGAAGGAA+AGG - chr8.2:60563062-60563081 None:intergenic 25.0%
! TTGATAGAAAAACATATCTG+TGG - chr8.2:60563676-60563695 None:intergenic 25.0%
! TTGTAGTAAATTGTGTATCA+TGG + chr8.2:60564496-60564515 MS.gene61079:intron 25.0%
!! TTGAAGTTTGACTTTCTAAA+CGG - chr8.2:60564132-60564151 None:intergenic 25.0%
!!! ATTTAAGTAGCCTTATATAG+TGG - chr8.2:60564842-60564861 None:intergenic 25.0%
!!! CAAAAAGTTGTATTTTGAAC+TGG - chr8.2:60563781-60563800 None:intergenic 25.0%
!!! TAGGTAAAATGGATTACTAT+TGG - chr8.2:60563602-60563621 None:intergenic 25.0%
AAGAAACTGATGAACAATTC+AGG + chr8.2:60566637-60566656 MS.gene61079:CDS 30.0%
AATGAGATAAATCGGTAGTT+AGG - chr8.2:60564801-60564820 None:intergenic 30.0%
AGAGATAACCATGAAAAATC+CGG + chr8.2:60566504-60566523 MS.gene61079:CDS 30.0%
ATTGATGTGAGAGGTAATTA+AGG - chr8.2:60563012-60563031 None:intergenic 30.0%
CAACCTATGAAACATCAATA+CGG - chr8.2:60563386-60563405 None:intergenic 30.0%
CAATTACACTTACAAGAGTT+AGG - chr8.2:60563621-60563640 None:intergenic 30.0%
CTAATATCAACAAGTGTTAC+AGG - chr8.2:60565061-60565080 None:intergenic 30.0%
CTTACAAGAGTTAGGTAAAA+TGG - chr8.2:60563613-60563632 None:intergenic 30.0%
GAAACAACGTTGTTAAATAG+CGG - chr8.2:60566303-60566322 None:intergenic 30.0%
GGTGTTTCATTGTGATTATA+AGG + chr8.2:60566013-60566032 MS.gene61079:CDS 30.0%
TAAAGGGTTTATCTTGCAAA+TGG - chr8.2:60566437-60566456 None:intergenic 30.0%
TTGTCAAATAGCATCTATAG+TGG - chr8.2:60566207-60566226 None:intergenic 30.0%
! AACAATCACGATCAGTTTTA+AGG - chr8.2:60566077-60566096 None:intergenic 30.0%
! ACTTTGAGTTATCATGATGT+AGG - chr8.2:60563961-60563980 None:intergenic 30.0%
! ATCTGAATAATTTTCGCCAT+CGG + chr8.2:60564216-60564235 MS.gene61079:intron 30.0%
! CTTTTCTCTTATTCCTTCTA+TGG - chr8.2:60563453-60563472 None:intergenic 30.0%
! TCTCTCTGAAAGTAATTGTT+AGG + chr8.2:60563416-60563435 MS.gene61079:intron 30.0%
! TGTGTATCATGGATTAATAG+TGG + chr8.2:60564507-60564526 MS.gene61079:intron 30.0%
! TTGTACTATTGATGATTGTC+AGG + chr8.2:60565416-60565435 MS.gene61079:CDS 30.0%
! TTTTCGACTTTGGTAAATCA+AGG + chr8.2:60563137-60563156 MS.gene61079:intron 30.0%
!! AGTTGTTTGATTTTCGACTT+TGG + chr8.2:60563127-60563146 MS.gene61079:intron 30.0%
!! ATGAAAAGTACCTACTAATG+GGG + chr8.2:60563516-60563535 MS.gene61079:intron 30.0%
!! CTGAAGATACATATTTTTGC+AGG + chr8.2:60565093-60565112 MS.gene61079:intron 30.0%
!! CTGAATTTTAACATCAACAG+AGG - chr8.2:60565595-60565614 None:intergenic 30.0%
!! GATGAAAAGTACCTACTAAT+GGG + chr8.2:60563515-60563534 MS.gene61079:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG - chr8.2:60564481-60564500 None:intergenic 30.0%
!! TGATGAAAAGTACCTACTAA+TGG + chr8.2:60563514-60563533 MS.gene61079:intron 30.0%
!!! CATTTTTTTACTTCTTCCAG+AGG + chr8.2:60565385-60565404 MS.gene61079:intron 30.0%
!!! CTTTTAATTTACCTCTCTTG+TGG + chr8.2:60566365-60566384 MS.gene61079:intron 30.0%
AAACATGACAAGACATGTCA+AGG + chr8.2:60565545-60565564 MS.gene61079:CDS 35.0%
ACAATTCAGGTCAAGGAATA+TGG + chr8.2:60566650-60566669 MS.gene61079:CDS 35.0%
AGAGGTAATTAAGGTCTTCT+TGG - chr8.2:60563003-60563022 None:intergenic 35.0%
AGTTAAGCTGGAATCAATAG+AGG + chr8.2:60565821-60565840 MS.gene61079:intron 35.0%
ATAAGCAACTCTAGTTGAGT+TGG - chr8.2:60566735-60566754 None:intergenic 35.0%
ATGATGAGAATTGATGTGAG+AGG - chr8.2:60563021-60563040 None:intergenic 35.0%
ATGTCATTGCATGTCTAAAC+TGG - chr8.2:60563806-60563825 None:intergenic 35.0%
CAACTAGAGTTGCTTATGAA+GGG + chr8.2:60566738-60566757 MS.gene61079:CDS 35.0%
CAAGATAAACCCTTTATGTG+TGG + chr8.2:60566441-60566460 MS.gene61079:CDS 35.0%
CAATTCAGGTCAAGGAATAT+GGG + chr8.2:60566651-60566670 MS.gene61079:CDS 35.0%
CTAACCAACATTTCAACTGT+AGG - chr8.2:60566696-60566715 None:intergenic 35.0%
GGAATTTCTTACACTTGAGA+AGG - chr8.2:60566051-60566070 None:intergenic 35.0%
GTAGAAGATGACGATTCAAA+TGG - chr8.2:60565461-60565480 None:intergenic 35.0%
GTCATCTTCTACAACATGAT+GGG + chr8.2:60565469-60565488 MS.gene61079:CDS 35.0%
TAAAACTCTTCATACAGCCA+GGG - chr8.2:60565860-60565879 None:intergenic 35.0%
TAAGCAACTCTAGTTGAGTT+GGG - chr8.2:60566734-60566753 None:intergenic 35.0%
TAGGTAGAAATGGAAAAAGC+AGG + chr8.2:60564619-60564638 MS.gene61079:intron 35.0%
TAGTACAAATATATGGCCTC+TGG - chr8.2:60565404-60565423 None:intergenic 35.0%
TAGTGGTATACTAGTCCTAA+TGG - chr8.2:60563568-60563587 None:intergenic 35.0%
TAGTGTGATACCTCATGATT+TGG + chr8.2:60563930-60563949 MS.gene61079:intron 35.0%
TATGCAAAGTCATTCACTTG+AGG + chr8.2:60564735-60564754 MS.gene61079:CDS 35.0%
TCAACTAGAGTTGCTTATGA+AGG + chr8.2:60566737-60566756 MS.gene61079:CDS 35.0%
TCACATTATCTGGTCATGTA+CGG + chr8.2:60563227-60563246 MS.gene61079:intron 35.0%
TCATCTTCTACAACATGATG+GGG + chr8.2:60565470-60565489 MS.gene61079:CDS 35.0%
TGTCAAGGAGTTTCATAACA+AGG + chr8.2:60565560-60565579 MS.gene61079:CDS 35.0%
TTCACAAATCATGTCAAAGG+TGG - chr8.2:60564054-60564073 None:intergenic 35.0%
TTGAATACTTGTAGGGAATG+TGG + chr8.2:60564676-60564695 MS.gene61079:CDS 35.0%
TTGAATCATAACCACAAGAG+AGG - chr8.2:60566379-60566398 None:intergenic 35.0%
TTGACTTTCTAAACGGTGTT+TGG - chr8.2:60564125-60564144 None:intergenic 35.0%
! AACCACGACTTTTCATTGAA+GGG + chr8.2:60565522-60565541 MS.gene61079:CDS 35.0%
! CGTCTAATGTCTCTGAAAAT+AGG - chr8.2:60562948-60562967 None:intergenic 35.0%
! CTACAGTTGAAATGTTGGTT+AGG + chr8.2:60566694-60566713 MS.gene61079:CDS 35.0%
! CTTTGGAAGACCACTATATA+AGG + chr8.2:60564829-60564848 MS.gene61079:intron 35.0%
! GTAGGATTTTCCAAATCATG+AGG - chr8.2:60563943-60563962 None:intergenic 35.0%
! TATGTTTTCTGCAGTTAAGC+TGG + chr8.2:60565809-60565828 MS.gene61079:intron 35.0%
!! ATCAAAATTGGTTTGTGCAG+GGG + chr8.2:60566607-60566626 MS.gene61079:intron 35.0%
!! CATCAAAATTGGTTTGTGCA+GGG + chr8.2:60566606-60566625 MS.gene61079:intron 35.0%
!! TCATCAAAATTGGTTTGTGC+AGG + chr8.2:60566605-60566624 MS.gene61079:intron 35.0%
!!! CGCTATTTTTGTCAATACTG+TGG + chr8.2:60562966-60562985 MS.gene61079:CDS 35.0%
!!! GCACATTTTAATTGAAGACG+TGG + chr8.2:60566097-60566116 MS.gene61079:intron 35.0%
AACTACCAGTTTCATGCTTG+CGG - chr8.2:60565986-60566005 None:intergenic 40.0%
AAGTCTCACAGTTCACATAC+TGG - chr8.2:60565923-60565942 None:intergenic 40.0%
AATTAAGGTCTTCTTGGACC+TGG - chr8.2:60562997-60563016 None:intergenic 40.0%
AATTCACGGTTCTCTAGCAA+GGG + chr8.2:60564005-60564024 MS.gene61079:intron 40.0%
ACAGGACATAGAAACTTACG+AGG - chr8.2:60566545-60566564 None:intergenic 40.0%
AGGATTTAGTGTGTGCTCTA+AGG - chr8.2:60565896-60565915 None:intergenic 40.0%
ATGACTTCCATCAGCAATGT+TGG - chr8.2:60563295-60563314 None:intergenic 40.0%
ATGTGAACTGTGAGACTTGT+GGG + chr8.2:60565925-60565944 MS.gene61079:CDS 40.0%
CACTCATGGCTTATTCTTGT+TGG + chr8.2:60565310-60565329 MS.gene61079:intron 40.0%
CAGGACATAGAAACTTACGA+GGG - chr8.2:60566544-60566563 None:intergenic 40.0%
CATATTCTGCTACACTACAG+TGG + chr8.2:60564439-60564458 MS.gene61079:intron 40.0%
CCTATGAAACATCAATACGG+AGG - chr8.2:60563383-60563402 None:intergenic 40.0%
CGTCATCTTCTACAACATGA+TGG + chr8.2:60565468-60565487 MS.gene61079:CDS 40.0%
CTGATGAACAATTCAGGTCA+AGG + chr8.2:60566643-60566662 MS.gene61079:CDS 40.0%
GACTTTGCATATGCTGCAAT+AGG - chr8.2:60564726-60564745 None:intergenic 40.0%
GTAAAACTCTTCATACAGCC+AGG - chr8.2:60565861-60565880 None:intergenic 40.0%
GTCAGATATGACACTGACAT+TGG - chr8.2:60563361-60563380 None:intergenic 40.0%
GTGTCCTACAGTTGAAATGT+TGG + chr8.2:60566689-60566708 MS.gene61079:CDS 40.0%
TATGTGAACTGTGAGACTTG+TGG + chr8.2:60565924-60565943 MS.gene61079:CDS 40.0%
TCAGGCAAGTTACAGAAGAA+AGG + chr8.2:60565434-60565453 MS.gene61079:CDS 40.0%
TCGTGGTTGCAATTCTCAAT+TGG - chr8.2:60565510-60565529 None:intergenic 40.0%
TGAAACTGGTAGTTCATCAG+AGG + chr8.2:60565992-60566011 MS.gene61079:CDS 40.0%
TGATTGCCACATGAAAACCT+TGG + chr8.2:60563728-60563747 MS.gene61079:intron 40.0%
TTCCCTTCAATGAAAAGTCG+TGG - chr8.2:60565527-60565546 None:intergenic 40.0%
TTGCATATGCTGCAATAGGT+AGG - chr8.2:60564722-60564741 None:intergenic 40.0%
! AAGCAACTCTAGTTGAGTTG+GGG - chr8.2:60566733-60566752 None:intergenic 40.0%
! AAGGTTTTCATGTGGCAATC+AGG - chr8.2:60563729-60563748 None:intergenic 40.0%
! CAACCACGACTTTTCATTGA+AGG + chr8.2:60565521-60565540 MS.gene61079:CDS 40.0%
! CCTCCGTATTGATGTTTCAT+AGG + chr8.2:60563380-60563399 MS.gene61079:intron 40.0%
! GAAAGAGATCAAGAAGCACA+GGG + chr8.2:60564646-60564665 MS.gene61079:CDS 40.0%
! GAGAAGCACAAAGATTCTCA+TGG + chr8.2:60565675-60565694 MS.gene61079:CDS 40.0%
! TCTTATGGTTAAGAGCGTGA+TGG + chr8.2:60564312-60564331 MS.gene61079:intron 40.0%
! TGAAAGAGATCAAGAAGCAC+AGG + chr8.2:60564645-60564664 MS.gene61079:CDS 40.0%
! TGACTTGATGGATCAGTATC+AGG + chr8.2:60565211-60565230 MS.gene61079:intron 40.0%
! TGATGGATCAGTATCAGGTA+GGG + chr8.2:60565216-60565235 MS.gene61079:intron 40.0%
! TTGATGGATCAGTATCAGGT+AGG + chr8.2:60565215-60565234 MS.gene61079:intron 40.0%
!! AAAAGTACCTACTAATGGGG+TGG + chr8.2:60563519-60563538 MS.gene61079:intron 40.0%
!! TCAAAATTGGTTTGTGCAGG+GGG + chr8.2:60566608-60566627 MS.gene61079:intron 40.0%
!!! TCACGATCAGTTTTAAGGCT+AGG - chr8.2:60566072-60566091 None:intergenic 40.0%
!!! TTGGCAGTTTTGTTCACTCA+TGG + chr8.2:60565296-60565315 MS.gene61079:intron 40.0%
AATCACGAAATGCCGAACAC+AGG + chr8.2:60562891-60562910 MS.gene61079:CDS 45.0%
ACCCTTTATGTGTGGCTTTC+CGG + chr8.2:60566449-60566468 MS.gene61079:CDS 45.0%
ATATGCTGCAATAGGTAGGC+AGG - chr8.2:60564718-60564737 None:intergenic 45.0%
ATCACGAAATGCCGAACACA+GGG + chr8.2:60562892-60562911 MS.gene61079:CDS 45.0%
ATCCGGAAAGCCACACATAA+AGG - chr8.2:60566454-60566473 None:intergenic 45.0%
CAATTCACGGTTCTCTAGCA+AGG + chr8.2:60564004-60564023 MS.gene61079:intron 45.0%
CATTATCTGGTCATGTACGG+CGG + chr8.2:60563230-60563249 MS.gene61079:intron 45.0%
CTCTTGAGAAGCTCCATCAA+GGG + chr8.2:60565243-60565262 MS.gene61079:intron 45.0%
CTGTTGTCAATCGCGAATTG+TGG + chr8.2:60566135-60566154 MS.gene61079:intron 45.0%
CTTGCTAGAGAACCGTGAAT+TGG - chr8.2:60564006-60564025 None:intergenic 45.0%
CTTGTAACCACCCCATTAGT+AGG - chr8.2:60563529-60563548 None:intergenic 45.0%
GAAGTTGTAGCGTGAAGCAT+TGG + chr8.2:60565153-60565172 MS.gene61079:intron 45.0%
GAATCATCCATCCCTGTGTT+CGG - chr8.2:60562906-60562925 None:intergenic 45.0%
GCAAATCTCATGCCACAATC+CGG - chr8.2:60566471-60566490 None:intergenic 45.0%
GCATTTCGTGATTGCTTCTG+CGG - chr8.2:60562884-60562903 None:intergenic 45.0%
GGAAACATGGCATCCATAGA+AGG + chr8.2:60563437-60563456 MS.gene61079:intron 45.0%
GGTTCGCACAAACCAATTCA+CGG + chr8.2:60563991-60564010 MS.gene61079:intron 45.0%
TCAGGTCAAGGAATATGGGA+GGG + chr8.2:60566655-60566674 MS.gene61079:CDS 45.0%
TCCGGAAAGCCACACATAAA+GGG - chr8.2:60566453-60566472 None:intergenic 45.0%
TCTCACAGTTCACATACTGG+TGG - chr8.2:60565920-60565939 None:intergenic 45.0%
TGATCCAGTGTCGTATACTG+TGG + chr8.2:60565004-60565023 MS.gene61079:intron 45.0%
TGGGAGTTTGAGAGCTCTTA+TGG + chr8.2:60564297-60564316 MS.gene61079:intron 45.0%
TTCAGGTCAAGGAATATGGG+AGG + chr8.2:60566654-60566673 MS.gene61079:CDS 45.0%
! CATGCGAACCGGATTTTTCA+TGG - chr8.2:60566515-60566534 None:intergenic 45.0%
! CCACTATTTTCCACGATGTG+CGG - chr8.2:60564413-60564432 None:intergenic 45.0%
! TTTGCTTCGAGTTCTTCCGA+TGG - chr8.2:60562861-60562880 None:intergenic 45.0%
! TTTTGAATGGAGCGTGACTG+AGG - chr8.2:60565271-60565290 None:intergenic 45.0%
!! ACTGCCAACCTCGTTTTGAA+TGG - chr8.2:60565284-60565303 None:intergenic 45.0%
!! AGCAACTCTAGTTGAGTTGG+GGG - chr8.2:60566732-60566751 None:intergenic 45.0%
!! ATCAGCAATGTTGGTGCTAC+CGG - chr8.2:60563286-60563305 None:intergenic 45.0%
!! GTGAATTGGTTTGTGCGAAC+CGG - chr8.2:60563992-60564011 None:intergenic 45.0%
!! TAACTCAAAGTACCGCGAAC+CGG + chr8.2:60563970-60563989 MS.gene61079:intron 45.0%
!!! GTGCTGTTTTCTCGGTCTTT+GGG + chr8.2:60564238-60564257 MS.gene61079:intron 45.0%
!!! TGCTGTTTTCTCGGTCTTTG+GGG + chr8.2:60564239-60564258 MS.gene61079:intron 45.0%
!! ATATTAAAATCATAAAATTA+TGG + chr8.2:60565131-60565150 MS.gene61079:intron 5.0%
ACAGTTCACATACTGGTGGC+AGG - chr8.2:60565916-60565935 None:intergenic 50.0%
ATGTGTGGCTTTCCGGATTG+TGG + chr8.2:60566456-60566475 MS.gene61079:CDS 50.0%
CAGTCCACAGTATACGACAC+TGG - chr8.2:60565011-60565030 None:intergenic 50.0%
CCGCACATCGTGGAAAATAG+TGG + chr8.2:60564410-60564429 MS.gene61079:intron 50.0%
CCTCTTGAGAAGCTCCATCA+AGG + chr8.2:60565242-60565261 MS.gene61079:intron 50.0%
CCTTGATGGAGCTTCTCAAG+AGG - chr8.2:60565245-60565264 None:intergenic 50.0%
CGCTCCATTCAAAACGAGGT+TGG + chr8.2:60565277-60565296 MS.gene61079:intron 50.0%
CTCAGACTCCAAAATGCGTG+AGG + chr8.2:60565178-60565197 MS.gene61079:intron 50.0%
GAGGGTAAAGACATGCGAAC+CGG - chr8.2:60566526-60566545 None:intergenic 50.0%
GAGGTAGTGTGCTTATACCC+TGG + chr8.2:60565840-60565859 MS.gene61079:CDS 50.0%
GGTAGCACCAACATTGCTGA+TGG + chr8.2:60563285-60563304 MS.gene61079:intron 50.0%
GTCAATACTGTGGCATCTCC+AGG + chr8.2:60562976-60562995 MS.gene61079:CDS 50.0%
GTCACGCTCCATTCAAAACG+AGG + chr8.2:60565273-60565292 MS.gene61079:intron 50.0%
TACCAGTTTCATGCTTGCGG+AGG - chr8.2:60565983-60566002 None:intergenic 50.0%
! TGGCAGCCAAGGTTTTCATG+TGG - chr8.2:60563737-60563756 None:intergenic 50.0%
!! GGCAGCATGGTTTGACTTGA+TGG + chr8.2:60565199-60565218 MS.gene61079:intron 50.0%
!!! GGTGCTGTTTTCTCGGTCTT+TGG + chr8.2:60564237-60564256 MS.gene61079:intron 50.0%
CACAGATACTGCACGCACTG+AGG + chr8.2:60563755-60563774 MS.gene61079:intron 55.0%
CACCTCCGCAAGCATGAAAC+TGG + chr8.2:60565978-60565997 MS.gene61079:CDS 55.0%
CCAAAATGCGTGAGGCAGCA+TGG + chr8.2:60565186-60565205 MS.gene61079:intron 55.0%
CGAAATGCCGAACACAGGGA+TGG + chr8.2:60562896-60562915 MS.gene61079:CDS 55.0%
CTCAGTGCGTGCAGTATCTG+TGG - chr8.2:60563757-60563776 None:intergenic 55.0%
TGCAGTATCTGTGGCAGCCA+AGG - chr8.2:60563748-60563767 None:intergenic 55.0%
! CCATGCTGCCTCACGCATTT+TGG - chr8.2:60565189-60565208 None:intergenic 55.0%
! GACCGAGAAAACAGCACCGA+TGG - chr8.2:60564235-60564254 None:intergenic 55.0%
!!! CGCCATCGGTGCTGTTTTCT+CGG + chr8.2:60564230-60564249 MS.gene61079:intron 55.0%
AGTGCTGTCACCGCACATCG+TGG + chr8.2:60564400-60564419 MS.gene61079:intron 60.0%
CCTTCCCACAGCCAGTTTCC+GGG - chr8.2:60565632-60565651 None:intergenic 60.0%
GCCTTCCCACAGCCAGTTTC+CGG - chr8.2:60565633-60565652 None:intergenic 60.0%
TCAGAAGCAGCACGTGTGCC+CGG + chr8.2:60565611-60565630 MS.gene61079:CDS 60.0%
TGTGCCCGGAAACTGGCTGT+GGG + chr8.2:60565625-60565644 MS.gene61079:CDS 60.0%
! CGTGACTGAGGCACCCTTGA+TGG - chr8.2:60565259-60565278 None:intergenic 60.0%
!! GGTTTGTGCGAACCGGTTCG+CGG - chr8.2:60563985-60564004 None:intergenic 60.0%
CAGCACGTGTGCCCGGAAAC+TGG + chr8.2:60565618-60565637 MS.gene61079:CDS 65.0%
CCCGGAAACTGGCTGTGGGA+AGG + chr8.2:60565629-60565648 MS.gene61079:CDS 65.0%
GTGTGCCCGGAAACTGGCTG+TGG + chr8.2:60565624-60565643 MS.gene61079:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 60562855 60566770 60562855 ID=MS.gene61079
chr8.2 mRNA 60562855 60566770 60562855 ID=MS.gene61079.t1;Parent=MS.gene61079
chr8.2 exon 60562855 60563043 60562855 ID=MS.gene61079.t1.exon1;Parent=MS.gene61079.t1
chr8.2 CDS 60562855 60563043 60562855 ID=cds.MS.gene61079.t1;Parent=MS.gene61079.t1
chr8.2 exon 60564622 60564756 60564622 ID=MS.gene61079.t1.exon2;Parent=MS.gene61079.t1
chr8.2 CDS 60564622 60564756 60564622 ID=cds.MS.gene61079.t1;Parent=MS.gene61079.t1
chr8.2 exon 60565405 60565696 60565405 ID=MS.gene61079.t1.exon3;Parent=MS.gene61079.t1
chr8.2 CDS 60565405 60565696 60565405 ID=cds.MS.gene61079.t1;Parent=MS.gene61079.t1
chr8.2 exon 60565823 60566058 60565823 ID=MS.gene61079.t1.exon4;Parent=MS.gene61079.t1
chr8.2 CDS 60565823 60566058 60565823 ID=cds.MS.gene61079.t1;Parent=MS.gene61079.t1
chr8.2 exon 60566402 60566545 60566402 ID=MS.gene61079.t1.exon5;Parent=MS.gene61079.t1
chr8.2 CDS 60566402 60566545 60566402 ID=cds.MS.gene61079.t1;Parent=MS.gene61079.t1
chr8.2 exon 60566627 60566770 60566627 ID=MS.gene61079.t1.exon6;Parent=MS.gene61079.t1
chr8.2 CDS 60566627 60566770 60566627 ID=cds.MS.gene61079.t1;Parent=MS.gene61079.t1
Gene Sequence

>MS.gene61079

ATGCCATCGGAAGAACTCGAAGCAAACCGCAGAAGCAATCACGAAATGCCGAACACAGGGATGGATGATTCATTTGAAAGTAACGAAAGACCTATTTTCAGAGACATTAGACGCTATTTTTGTCAATACTGTGGCATCTCCAGGTCCAAGAAGACCTTAATTACCTCTCACATCAATTCTCATCATCAAGTATATTTTTCTATTCCTTTCCTTCAATTTGTTTCTAAACACTTCGTCTGAATTGATAGATTTTAAGTTCGATTTTCTAATTGAGTTGTTTGATTTTCGACTTTGGTAAATCAAGGCCAAAATAAAATACAAATTGCTGATTGCTTGAATGCAAATAATCAAAATCAAAATACTTTACATTTTTCACATTATCTGGTCATGTACGGCGGCGATATGTGTTTAAATATGATTTGATATCTCCGGTAGCACCAACATTGCTGATGGAAGTCATGCGTGTTTGATCGTGTCTGACACAACACTCACACATGTCAATGCCAATGTCAGTGTCATATCTGACCTCCGTATTGATGTTTCATAGGTTGACATACGATTTCTCTCTGAAAGTAATTGTTAGGAAACATGGCATCCATAGAAGGAATAAGAGAAAAGTAATGAACTCTTTTGTATTGATGAGAATAAAAAGTTACAAATGATGAAAAGTACCTACTAATGGGGTGGTTACAAGTTATTTATACTATTATCCATTAGGACTAGTATACCACTAATCCTATATTTCCAATAGTAATCCATTTTACCTAACTCTTGTAAGTGTAATTGTATACAATGGCAAATGTGCATACTCAATTTCTCCACAGATATGTTTTTCTATCAAAATGTGGTAATAATATGATGCAATGAAACACCTGATTGCCACATGAAAACCTTGGCTGCCACAGATACTGCACGCACTGAGGCCAGTTCAAAATACAACTTTTTGAACCAGTTTAGACATGCAATGACATTTGTATACACTGACATTTTTAAGAACTAATCTACACAAGTTATCGATTTTAGTAACTAAATTTTACATTGATTCATTTCAAAGTTTAGTTAATTTTGCGAGTGATAGTGTGATACCTCATGATTTGGAAAATCCTACATCATGATAACTCAAAGTACCGCGAACCGGTTCGCACAAACCAATTCACGGTTCTCTAGCAAGGGTAGCGAATTCTGTGACTATGCTACCACCTTTGACATGATTTGTGAATTTTTTCATTTCAAATGCATTTTTTTCAATTATGAAGTTTCAAATATTCCAAACACCGTTTAGAAAGTCAAACTTCAAATTCATGAAAAGAAAAACCATTTGTAAGCATGAATCTTTATATCTAGCTATAAGAGAGCTGCATATCTGAATAATTTTCGCCATCGGTGCTGTTTTCTCGGTCTTTGGGGTGATAGTTCTATTTATTAATCGTCAAAACTTAATGTGGGAGTTTGAGAGCTCTTATGGTTAAGAGCGTGATGGATAAACACACAAGACATTTTCTAACTTTTTGACCTTTCCCTCTATTTTGTAAATTCAGTATAATCAGTGCTGTCACCGCACATCGTGGAAAATAGTGGTTTCTTCATATTCTGCTACACTACAGTGGTATAGCACTGCTACAGCCGCTATTTGACAACACTTTGTAGTAAATTGTGTATCATGGATTAATAGTGGTTTATTGAAATTTCACTACACTATGAGATCGCTATTTGACAAGAGCGATTATAATTCTAATGGTTATGTTGTTGACTAATAATGTTTCTTAGGTAGAAATGGAAAAAGCAGGACTTGAAAGAGATCAAGAAGCACAGGGTACAAAATTGAATACTTGTAGGGAATGTGGTGCGAGTTTTAAAAAACCTGCCTACCTATTGCAGCATATGCAAAGTCATTCACTTGAGGTATTTACTGACGATATAGTAAGATGACAGCATTCTAATGTCCTAACTACCGATTTATCTCATTATATATTTCTTTGGAAGACCACTATATAAGGCTACTTAAATTGTGTTTTTTGAAATTCATTTCAATGGATTATGTTCCTTGAAATTTCTGTATAGATAAAAAAAAAATTGGGAGATTATAATTAGTTCATGCTTTAGGTATCTTTAGATTTTGTTAAAATCTGGTTACATATGTCTTTATGTTTGATCCAGTGTCGTATACTGTGGACTGTCTTAGTCAGCTCAATGAATTACGATCCCTGTAACACTTGTTGATATTAGTTTTTACATCAACTGAAGATACATATTTTTGCAGGAAAGTATATTCTATGATATTAAAATCATAAAATTATGGAAGTTGTAGCGTGAAGCATTGGATCTCAGACTCCAAAATGCGTGAGGCAGCATGGTTTGACTTGATGGATCAGTATCAGGTAGGGAGACCTCTTGAGAAGCTCCATCAAGGGTGCCTCAGTCACGCTCCATTCAAAACGAGGTTGGCAGTTTTGTTCACTCATGGCTTATTCTTGTTGGAGCACATTTAATGCTTATTAAGTTATTAGTTTATGGTTTTCTAGCTTTTTAACATTTTTTTACTTCTTCCAGAGGCCATATATTTGTACTATTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGAATCGTCATCTTCTACAACATGATGGGGAAAAATTTAAATGTCCAATTGAGAATTGCAACCACGACTTTTCATTGAAGGGAAACATGACAAGACATGTCAAGGAGTTTCATAACAAGGATTCTTCTACCTCTGTTGATGTTAAAATTCAGAAGCAGCACGTGTGCCCGGAAACTGGCTGTGGGAAGGCTTTCAAATTTGCATCAAAGCTAGAGAAGCACAAAGATTCTCATGGTAAACTTCATTTCAATATTTGATATTTATGAGCAAGTTCTTCATGTGTTGTACATAATTTGATCCTTTATTTAGAGTTTTGAAAACATGTTAAGTACGGTTTTGAAGACTGTATGTTTTCTGCAGTTAAGCTGGAATCAATAGAGGTAGTGTGCTTATACCCTGGCTGTATGAAGAGTTTTACGAATCTTCAGTGCCTTAGAGCACACACTAAATCCTGCCACCAGTATGTGAACTGTGAGACTTGTGGGAAAAAGCAACTGCGTAAGAACATTAAAAGACACCTCCGCAAGCATGAAACTGGTAGTTCATCAGAGGTGTTTCATTGTGATTATAAGGATTGTAGCAGCACCTTCTCAAGTGTAAGAAATTCCTAGCCTTAAAACTGATCGTGATTGTTGCACATTTTAATTGAAGACGTGGAATTTTTTAAACTCACTGTTGTCAATCGCGAATTGTGGAAAATAGCTTTTTGTTCAAATTCAGCTATATAACAAGGATATCGTTCCACTATAGATGCTATTTGACAATATTTTGTACTAAATAGCATTGTAGAACAATTGCGATCTGATCAAATTTCGCTACGCTATAATGCTGCTGTATCCGCTATTTAACAACGTTGTTTCAACGATGTTTCAGTTTAAACATTTGTACATCAATTTTTCTTGCTTTTAATTTACCTCTCTTGTGGTTATGATTCAACAGAAATCTAATCTTTGTAAGCATGTAAAGGCTGTCCATTTGCAAGATAAACCCTTTATGTGTGGCTTTCCGGATTGTGGCATGAGATTTGCTTATAAACATGTGAGAGATAACCATGAAAAATCCGGTTCGCATGTCTTTACCCTCGTAAGTTTCTATGTCCTGTAAAGAATCTGTTATATTATCTACATACATGCAAGATAAACTCATCAAAATTGGTTTGTGCAGGGGGATTTTGAAGAAACTGATGAACAATTCAGGTCAAGGAATATGGGAGGGAGAAAGAGAAAGTGTCCTACAGTTGAAATGTTGGTTAGGAAGAGAGTTGCACCCCCAACTCAACTAGAGTTGCTTATGAAGGGTGTTGAGTAG
Protein sequence

>MS.gene61079.t1

MPSEELEANRRSNHEMPNTGMDDSFESNERPIFRDIRRYFCQYCGISRSKKTLITSHINSHHQVEMEKAGLERDQEAQGTKLNTCRECGASFKKPAYLLQHMQSHSLERPYICTIDDCQASYRRKDHLNRHLLQHDGEKFKCPIENCNHDFSLKGNMTRHVKEFHNKDSSTSVDVKIQKQHVCPETGCGKAFKFASKLEKHKDSHVKLESIEVVCLYPGCMKSFTNLQCLRAHTKSCHQYVNCETCGKKQLRKNIKRHLRKHETGSSSEVFHCDYKDCSSTFSSKSNLCKHVKAVHLQDKPFMCGFPDCGMRFAYKHVRDNHEKSGSHVFTLGDFEETDEQFRSRNMGGRKRKCPTVEMLVRKRVAPPTQLELLMKGVE