Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039628.t1 | XP_024635969.1 | 94.5 | 364 | 19 | 1 | 1 | 363 | 1 | 364 | 1.30E-158 | 569.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039628.t1 | Q84MZ4 | 39.8 | 389 | 181 | 4 | 14 | 350 | 15 | 402 | 8.8e-60 | 232.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039628.t1 | A0A2Z6M9M5 | 76.6 | 384 | 68 | 2 | 1 | 363 | 1 | 383 | 5.4e-135 | 490.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene039628.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039628.t1 | MTR_8g039590 | 78.049 | 41 | 8 | 1 | 314 | 354 | 26 | 65 | 2.55e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039628.t1 | AT1G72050 | 54.756 | 389 | 123 | 3 | 14 | 350 | 15 | 402 | 1.71e-147 | 423 |
| MS.gene039628.t1 | AT1G72050 | 54.756 | 389 | 123 | 3 | 14 | 350 | 30 | 417 | 1.96e-147 | 423 |
| MS.gene039628.t1 | AT1G72050 | 54.459 | 314 | 91 | 2 | 88 | 350 | 2 | 314 | 4.09e-118 | 345 |
| MS.gene039628.t1 | AT1G72050 | 52.174 | 276 | 81 | 1 | 88 | 312 | 2 | 277 | 1.40e-98 | 295 |
Find 69 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTAATATCTCTGAATTT+TGG | 0.068375 | 3.1:-9770940 | None:intergenic |
| AATTGATGTGGGATGTAATT+AGG | 0.159176 | 3.1:-9771005 | None:intergenic |
| AGGATTTAACATGAGCTTTA+AGG | 0.225594 | 3.1:-9772717 | None:intergenic |
| ACCTTTCCACAGCCAATTTC+AGG | 0.226103 | 3.1:-9772461 | None:intergenic |
| TTCAAACCAGCCTCTGATTC+AGG | 0.234528 | 3.1:-9771458 | None:intergenic |
| ATTGATGTGGGATGTAATTA+GGG | 0.319248 | 3.1:-9771004 | None:intergenic |
| AAGAAGCTGATGAAGAATTC+AGG | 0.351513 | 3.1:+9773259 | MS.gene039628:CDS |
| GCAAACCTCATTCCACAATT+AGG | 0.364679 | 3.1:-9773051 | None:intergenic |
| CCACAGTAGAAATGTTAGTT+AGG | 0.390467 | 3.1:+9773319 | MS.gene039628:CDS |
| CAGTTTGTATGTCCTGAAAT+TGG | 0.397925 | 3.1:+9772449 | MS.gene039628:CDS |
| ATCTACAGATACCGCAGAAT+TGG | 0.415201 | 3.1:-9770972 | None:intergenic |
| TTTCTCTTCACCCCTCCCCT+TGG | 0.432023 | 3.1:-9773288 | None:intergenic |
| AGAGAACTTGTTATTCGTGC+AGG | 0.446937 | 3.1:+9773368 | MS.gene039628:CDS |
| AAATGCTTCAGTGGAACTGC+TGG | 0.457734 | 3.1:-9772821 | None:intergenic |
| AGCATTTAAATGTGAATTTG+AGG | 0.461808 | 3.1:+9772837 | MS.gene039628:CDS |
| ATGTAGCCTTGAAGATTGTA+AGG | 0.466096 | 3.1:+9772247 | MS.gene039628:CDS |
| GTGTGTGGGTTTCCTAATTG+TGG | 0.466837 | 3.1:+9773039 | MS.gene039628:CDS |
| CGGCTTTACTTGAAAGTGTA+CGG | 0.472717 | 3.1:-9773013 | None:intergenic |
| ATGTGAACTGTGACACTTGT+GGG | 0.479574 | 3.1:+9772749 | MS.gene039628:CDS |
| CCTATTGAGAACTGCAAAAG+TGG | 0.483825 | 3.1:+9772338 | MS.gene039628:CDS |
| CAAGTAAAGCCGTTTGTGTG+TGG | 0.487892 | 3.1:+9773024 | MS.gene039628:CDS |
| CAGGTCAAGGCCAAGGGGAG+GGG | 0.490449 | 3.1:+9773278 | MS.gene039628:CDS |
| AGCTCGCCTTACAATCTTCA+AGG | 0.496505 | 3.1:-9772253 | None:intergenic |
| GGATAAAGCAAGAGTTGAAA+CGG | 0.505148 | 3.1:+9771433 | MS.gene039628:CDS |
| TGTCACAGTTCACATATTGA+TGG | 0.511542 | 3.1:-9772741 | None:intergenic |
| TCAGGTCAAGGCCAAGGGGA+GGG | 0.518065 | 3.1:+9773277 | MS.gene039628:CDS |
| TTCACATTTAAATGCTTCAG+TGG | 0.520846 | 3.1:-9772830 | None:intergenic |
| TCTTCAAGGCTACATACAAA+TGG | 0.524961 | 3.1:-9772239 | None:intergenic |
| AACATGAGCTTTAAGGCACT+CGG | 0.529952 | 3.1:-9772710 | None:intergenic |
| AAGTAAAGCCGTTTGTGTGT+GGG | 0.534040 | 3.1:+9773025 | MS.gene039628:CDS |
| ACAGTTCACATATTGATGGC+AGG | 0.543929 | 3.1:-9772737 | None:intergenic |
| AAGAATTCAGGTCAAGGCCA+AGG | 0.544513 | 3.1:+9773271 | MS.gene039628:CDS |
| GTATGTCCTGAAATTGGCTG+TGG | 0.551180 | 3.1:+9772455 | MS.gene039628:CDS |
| GGTTTCCTAATTGTGGAATG+AGG | 0.556382 | 3.1:+9773046 | MS.gene039628:CDS |
| CGTCACCTTCTACAACATCA+AGG | 0.557665 | 3.1:+9772299 | MS.gene039628:CDS |
| TTAGGAAACCCACACACAAA+CGG | 0.558755 | 3.1:-9773033 | None:intergenic |
| CTAACTAACATTTCTACTGT+GGG | 0.561562 | 3.1:-9773318 | None:intergenic |
| GCATTTAAATGTGAATTTGA+GGG | 0.563687 | 3.1:+9772838 | MS.gene039628:CDS |
| AGTTCTCTAATTGACTAGGT+GGG | 0.566365 | 3.1:-9773353 | None:intergenic |
| GAACAAATACCTCAAGGGAA+TGG | 0.572995 | 3.1:-9771550 | None:intergenic |
| ACGGAACCTGAATCAGAGGC+TGG | 0.573226 | 3.1:+9771452 | MS.gene039628:CDS |
| CCTAACTAACATTTCTACTG+TGG | 0.575540 | 3.1:-9773319 | None:intergenic |
| CCACATCAATTCTGAACACA+AGG | 0.577487 | 3.1:+9771017 | MS.gene039628:CDS |
| CGCTATTACTGCCAATTCTG+CGG | 0.581521 | 3.1:+9770961 | MS.gene039628:CDS |
| TTCAGGTCAAGGCCAAGGGG+AGG | 0.583372 | 3.1:+9773276 | MS.gene039628:CDS |
| AACTGCTGGCTTCATGTGTG+CGG | 0.584149 | 3.1:-9772807 | None:intergenic |
| AAGTTCTCTAATTGACTAGG+TGG | 0.584481 | 3.1:-9773354 | None:intergenic |
| AGAATTCAGGTCAAGGCCAA+GGG | 0.585579 | 3.1:+9773272 | MS.gene039628:CDS |
| GAAGTGGTGTGCTTAGAGCC+TGG | 0.587135 | 3.1:+9772664 | MS.gene039628:CDS |
| TAAGGCGAGCTACAGAAGAA+AGG | 0.590587 | 3.1:+9772265 | MS.gene039628:CDS |
| TGATTGAACAAATACCTCAA+GGG | 0.597579 | 3.1:-9771555 | None:intergenic |
| CAGAAGCATGAAGATTCTCA+TGG | 0.597767 | 3.1:+9772506 | MS.gene039628:CDS |
| CCTTGTGTTCAGAATTGATG+TGG | 0.601822 | 3.1:-9771017 | None:intergenic |
| AACTGAAGAAGAATATGAAG+AGG | 0.602793 | 3.1:+9772779 | MS.gene039628:CDS |
| TTTGAAAGCTAATACTTGTG+AGG | 0.603167 | 3.1:+9771475 | MS.gene039628:CDS |
| TCCTGAAATTGGCTGTGGAA+AGG | 0.608455 | 3.1:+9772460 | MS.gene039628:CDS |
| GTTCTCTAATTGACTAGGTG+GGG | 0.608887 | 3.1:-9773352 | None:intergenic |
| GTCACCTTCTACAACATCAA+GGG | 0.613362 | 3.1:+9772300 | MS.gene039628:CDS |
| TAGGCTCGAAACAATTGAAG+TGG | 0.632928 | 3.1:+9772648 | MS.gene039628:CDS |
| CTGATGAAGAATTCAGGTCA+AGG | 0.636136 | 3.1:+9773265 | MS.gene039628:CDS |
| ACTAACATTTCTACTGTGGG+AGG | 0.639382 | 3.1:-9773315 | None:intergenic |
| AGTTCTACCCCTCCTCGTAG+TGG | 0.640750 | 3.1:+9772413 | MS.gene039628:CDS |
| TGAAACGGAACCTGAATCAG+AGG | 0.646705 | 3.1:+9771448 | MS.gene039628:CDS |
| CTTGTGTTCAGAATTGATGT+GGG | 0.647147 | 3.1:-9771016 | None:intergenic |
| AACAAGTTCTCTAATTGACT+AGG | 0.656480 | 3.1:-9773357 | None:intergenic |
| TATGCAAAGCCATTCCCTTG+AGG | 0.666726 | 3.1:+9771541 | MS.gene039628:CDS |
| GCTAATACTTGTGAGGAATG+TGG | 0.673142 | 3.1:+9771482 | MS.gene039628:CDS |
| GAATTCAGGTCAAGGCCAAG+GGG | 0.693128 | 3.1:+9773273 | MS.gene039628:CDS |
| TATGTGAACTGTGACACTTG+TGG | 0.719735 | 3.1:+9772748 | MS.gene039628:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATCTATAAAATTATTA+TGG | + | chr3.1:9771948-9771967 | MS.gene039628:intron | 10.0% |
| !! | TAAAAAATGTAACAAAAATT+TGG | - | chr3.1:9772937-9772956 | None:intergenic | 10.0% |
| !! | CAAGATTTATTTCATATATA+GGG | + | chr3.1:9773228-9773247 | MS.gene039628:intron | 15.0% |
| !! | GTTGAAAATTATAATTGTTT+AGG | + | chr3.1:9771281-9771300 | MS.gene039628:intron | 15.0% |
| !! | TCAAGATTTATTTCATATAT+AGG | + | chr3.1:9773227-9773246 | MS.gene039628:intron | 15.0% |
| !!! | ACATTTTTTATGTGAATTTT+AGG | + | chr3.1:9771403-9771422 | MS.gene039628:intron | 15.0% |
| !!! | TTGTTGTAAATATTTGTTAT+TGG | + | chr3.1:9771702-9771721 | MS.gene039628:intron | 15.0% |
| !!! | TTTTCAGTTTTATGATTTTA+GGG | + | chr3.1:9771256-9771275 | MS.gene039628:intron | 15.0% |
| !! | ATATATGAAATAAACAAGGA+CGG | - | chr3.1:9773141-9773160 | None:intergenic | 20.0% |
| !! | CCTTATATATGAAATAAACA+AGG | - | chr3.1:9773145-9773164 | None:intergenic | 20.0% |
| !! | TCTAGAAAAGTAAAACAATT+AGG | - | chr3.1:9771173-9771192 | None:intergenic | 20.0% |
| !! | TTGTGTATAATTGTTTAATG+TGG | + | chr3.1:9771630-9771649 | MS.gene039628:intron | 20.0% |
| !!! | ATCTATAGTTTTAACCAAAT+GGG | + | chr3.1:9771068-9771087 | MS.gene039628:intron | 20.0% |
| !!! | ATGAACAAATTTTGAGTATT+AGG | + | chr3.1:9771112-9771131 | MS.gene039628:intron | 20.0% |
| !!! | ATTTTTTGAAGAAAATTGAG+TGG | - | chr3.1:9771094-9771113 | None:intergenic | 20.0% |
| !!! | CCTTGTTTATTTCATATATA+AGG | + | chr3.1:9773142-9773161 | MS.gene039628:intron | 20.0% |
| !!! | CTTTTCAGTTTTATGATTTT+AGG | + | chr3.1:9771255-9771274 | MS.gene039628:intron | 20.0% |
| !!! | TGAACAAATTTTGAGTATTA+GGG | + | chr3.1:9771113-9771132 | MS.gene039628:intron | 20.0% |
| !!! | TTTTTTATGTGAATTTTAGG+AGG | + | chr3.1:9771406-9771425 | MS.gene039628:intron | 20.0% |
| ! | AGCAAATTCATATTAGCAAA+AGG | - | chr3.1:9772539-9772558 | None:intergenic | 25.0% |
| ! | AGCATTTAAATGTGAATTTG+AGG | + | chr3.1:9772837-9772856 | MS.gene039628:CDS | 25.0% |
| ! | GCATTTAAATGTGAATTTGA+GGG | + | chr3.1:9772838-9772857 | MS.gene039628:CDS | 25.0% |
| ! | GTTCAATCATAAATATCACA+TGG | + | chr3.1:9771569-9771588 | MS.gene039628:intron | 25.0% |
| ! | TATCTACAGTTTAACCTAAT+GGG | + | chr3.1:9771205-9771224 | MS.gene039628:intron | 25.0% |
| ! | TTATCTACAGTTTAACCTAA+TGG | + | chr3.1:9771204-9771223 | MS.gene039628:intron | 25.0% |
| ! | TTATGCAATTATAGCTTCTA+TGG | + | chr3.1:9771334-9771353 | MS.gene039628:intron | 25.0% |
| !! | CACTTGTTAATTTATTCATG+AGG | + | chr3.1:9771771-9771790 | MS.gene039628:intron | 25.0% |
| !! | GTCTAATATCTCTGAATTTT+GGG | - | chr3.1:9770942-9770961 | None:intergenic | 25.0% |
| !! | TTTGCAGTAAAATGTTTTGT+CGG | - | chr3.1:9773182-9773201 | None:intergenic | 25.0% |
| !!! | CATTTTTTAACTTCCAAATG+TGG | + | chr3.1:9772948-9772967 | MS.gene039628:intron | 25.0% |
| !!! | GATCTATAGTTTTAACCAAA+TGG | + | chr3.1:9771067-9771086 | MS.gene039628:intron | 25.0% |
| !!! | TATTAGGGTTTTGTTTGTTA+AGG | + | chr3.1:9771128-9771147 | MS.gene039628:intron | 25.0% |
| AACAAGTTCTCTAATTGACT+AGG | - | chr3.1:9773360-9773379 | None:intergenic | 30.0% | |
| AACTGAAGAAGAATATGAAG+AGG | + | chr3.1:9772779-9772798 | MS.gene039628:CDS | 30.0% | |
| AAGAAATTGATTGACCCATT+AGG | - | chr3.1:9771222-9771241 | None:intergenic | 30.0% | |
| AATTGATGTGGGATGTAATT+AGG | - | chr3.1:9771008-9771027 | None:intergenic | 30.0% | |
| AGGATTTAACATGAGCTTTA+AGG | - | chr3.1:9772720-9772739 | None:intergenic | 30.0% | |
| ATGATTGAACAAATACCTCA+AGG | - | chr3.1:9771559-9771578 | None:intergenic | 30.0% | |
| ATTGATGTGGGATGTAATTA+GGG | - | chr3.1:9771007-9771026 | None:intergenic | 30.0% | |
| CTAACTAACATTTCTACTGT+GGG | - | chr3.1:9773321-9773340 | None:intergenic | 30.0% | |
| TATGTGTGATTGATTGTGTA+TGG | + | chr3.1:9771362-9771381 | MS.gene039628:intron | 30.0% | |
| TGATTGAACAAATACCTCAA+GGG | - | chr3.1:9771558-9771577 | None:intergenic | 30.0% | |
| TTCACATTTAAATGCTTCAG+TGG | - | chr3.1:9772833-9772852 | None:intergenic | 30.0% | |
| TTTGAAAGCTAATACTTGTG+AGG | + | chr3.1:9771475-9771494 | MS.gene039628:CDS | 30.0% | |
| ! | ACATCGTTTGATAGTTTGTA+TGG | + | chr3.1:9771799-9771818 | MS.gene039628:intron | 30.0% |
| ! | ACATTATAGTGTGAAAGCAT+TGG | + | chr3.1:9771971-9771990 | MS.gene039628:intron | 30.0% |
| ! | CGTCTAATATCTCTGAATTT+TGG | - | chr3.1:9770943-9770962 | None:intergenic | 30.0% |
| ! | GATATGCATGTTTCTATGTT+TGG | + | chr3.1:9771836-9771855 | MS.gene039628:intron | 30.0% |
| ! | TCACTCATTCATACTTTTCA+AGG | - | chr3.1:9771882-9771901 | None:intergenic | 30.0% |
| !! | TTTCTTGTGATTTGTTACAG+AGG | + | chr3.1:9772216-9772235 | MS.gene039628:intron | 30.0% |
| !!! | GGATGTAATTAGGGTTTTTT+TGG | - | chr3.1:9770998-9771017 | None:intergenic | 30.0% |
| AAAACCTTCATTCTGCAGTT+AGG | + | chr3.1:9772629-9772648 | MS.gene039628:intron | 35.0% | |
| AACAAACTGCAAACACTTGA+TGG | - | chr3.1:9772568-9772587 | None:intergenic | 35.0% | |
| AACCTGATACTATTTCACCA+AGG | - | chr3.1:9772041-9772060 | None:intergenic | 35.0% | |
| AAGAAGCTGATGAAGAATTC+AGG | + | chr3.1:9773259-9773278 | MS.gene039628:CDS | 35.0% | |
| AAGTTCTCTAATTGACTAGG+TGG | - | chr3.1:9773357-9773376 | None:intergenic | 35.0% | |
| AGTTCTCTAATTGACTAGGT+GGG | - | chr3.1:9773356-9773375 | None:intergenic | 35.0% | |
| CAGTTTGTATGTCCTGAAAT+TGG | + | chr3.1:9772449-9772468 | MS.gene039628:CDS | 35.0% | |
| CATATTGGAGTTCTTTGTCT+GGG | - | chr3.1:9771999-9772018 | None:intergenic | 35.0% | |
| CCACAGTAGAAATGTTAGTT+AGG | + | chr3.1:9773319-9773338 | MS.gene039628:CDS | 35.0% | |
| CCTAACTAACATTTCTACTG+TGG | - | chr3.1:9773322-9773341 | None:intergenic | 35.0% | |
| CTTGTGTTCAGAATTGATGT+GGG | - | chr3.1:9771019-9771038 | None:intergenic | 35.0% | |
| GGATAAAGCAAGAGTTGAAA+CGG | + | chr3.1:9771433-9771452 | MS.gene039628:CDS | 35.0% | |
| GTGAAAAATTTCATGCAACC+AGG | - | chr3.1:9772685-9772704 | None:intergenic | 35.0% | |
| TCTTCAAGGCTACATACAAA+TGG | - | chr3.1:9772242-9772261 | None:intergenic | 35.0% | |
| TGGTGAAATAGTATCAGGTT+GGG | + | chr3.1:9772041-9772060 | MS.gene039628:intron | 35.0% | |
| TGTATGCAATGCTAGTATGA+TGG | - | chr3.1:9772900-9772919 | None:intergenic | 35.0% | |
| TGTCACAGTTCACATATTGA+TGG | - | chr3.1:9772744-9772763 | None:intergenic | 35.0% | |
| TGTTGAAGCAAATCCACATT+TGG | - | chr3.1:9772964-9772983 | None:intergenic | 35.0% | |
| TTGGTGAAATAGTATCAGGT+TGG | + | chr3.1:9772040-9772059 | MS.gene039628:intron | 35.0% | |
| ! | ATGTAGCCTTGAAGATTGTA+AGG | + | chr3.1:9772247-9772266 | MS.gene039628:CDS | 35.0% |
| ! | CATGTTTCTATGTTTGGTGA+TGG | + | chr3.1:9771842-9771861 | MS.gene039628:intron | 35.0% |
| ! | TTTTCCCTTGATGTTGTAGA+AGG | - | chr3.1:9772307-9772326 | None:intergenic | 35.0% |
| !! | ATGTGAATTTTAGGAGGAGA+TGG | + | chr3.1:9771412-9771431 | MS.gene039628:intron | 35.0% |
| !! | CTGAAGATACATGTTTTTGC+AGG | + | chr3.1:9771903-9771922 | MS.gene039628:intron | 35.0% |
| !!! | ATTTTGGGATTGCATCGTTT+TGG | - | chr3.1:9770927-9770946 | None:intergenic | 35.0% |
| AAGTAAAGCCGTTTGTGTGT+GGG | + | chr3.1:9773025-9773044 | MS.gene039628:CDS | 40.0% | |
| AATCCTTGATGAAGCTTCTC+AGG | - | chr3.1:9772073-9772092 | None:intergenic | 40.0% | |
| ACTAACATTTCTACTGTGGG+AGG | - | chr3.1:9773318-9773337 | None:intergenic | 40.0% | |
| AGAAAATTGAGTGGCCCATT+TGG | - | chr3.1:9771085-9771104 | None:intergenic | 40.0% | |
| ATCTACAGATACCGCAGAAT+TGG | - | chr3.1:9770975-9770994 | None:intergenic | 40.0% | |
| ATGCAATGCTAGTATGATGG+AGG | - | chr3.1:9772897-9772916 | None:intergenic | 40.0% | |
| ATGTGAACTGTGACACTTGT+GGG | + | chr3.1:9772749-9772768 | MS.gene039628:CDS | 40.0% | |
| CCACATCAATTCTGAACACA+AGG | + | chr3.1:9771017-9771036 | MS.gene039628:CDS | 40.0% | |
| CCTATTGAGAACTGCAAAAG+TGG | + | chr3.1:9772338-9772357 | MS.gene039628:CDS | 40.0% | |
| CCTTGTGTTCAGAATTGATG+TGG | - | chr3.1:9771020-9771039 | None:intergenic | 40.0% | |
| CTGATGAAGAATTCAGGTCA+AGG | + | chr3.1:9773265-9773284 | MS.gene039628:CDS | 40.0% | |
| GAACAAATACCTCAAGGGAA+TGG | - | chr3.1:9771553-9771572 | None:intergenic | 40.0% | |
| GCAAACCTCATTCCACAATT+AGG | - | chr3.1:9773054-9773073 | None:intergenic | 40.0% | |
| GCATATTGGAGTTCTTTGTC+TGG | - | chr3.1:9772000-9772019 | None:intergenic | 40.0% | |
| GCTAATACTTGTGAGGAATG+TGG | + | chr3.1:9771482-9771501 | MS.gene039628:CDS | 40.0% | |
| GGTTTCCTAATTGTGGAATG+AGG | + | chr3.1:9773046-9773065 | MS.gene039628:CDS | 40.0% | |
| GTCACCTTCTACAACATCAA+GGG | + | chr3.1:9772300-9772319 | MS.gene039628:CDS | 40.0% | |
| GTTCTCTAATTGACTAGGTG+GGG | - | chr3.1:9773355-9773374 | None:intergenic | 40.0% | |
| TAGGCTCGAAACAATTGAAG+TGG | + | chr3.1:9772648-9772667 | MS.gene039628:CDS | 40.0% | |
| TATGTGAACTGTGACACTTG+TGG | + | chr3.1:9772748-9772767 | MS.gene039628:CDS | 40.0% | |
| TTAGGAAACCCACACACAAA+CGG | - | chr3.1:9773036-9773055 | None:intergenic | 40.0% | |
| ! | ACAGTTCACATATTGATGGC+AGG | - | chr3.1:9772740-9772759 | None:intergenic | 40.0% |
| ! | CAGAAGCATGAAGATTCTCA+TGG | + | chr3.1:9772506-9772525 | MS.gene039628:CDS | 40.0% |
| ! | CGGCTTTACTTGAAAGTGTA+CGG | - | chr3.1:9773016-9773035 | None:intergenic | 40.0% |
| ! | CTTCATCAAGGATTTTGCCT+CGG | + | chr3.1:9772079-9772098 | MS.gene039628:intron | 40.0% |
| ! | TTCTGATTTTCACCACTACG+AGG | - | chr3.1:9772428-9772447 | None:intergenic | 40.0% |
| !! | AACATGAGCTTTAAGGCACT+CGG | - | chr3.1:9772713-9772732 | None:intergenic | 40.0% |
| !! | AGAGAACTTGTTATTCGTGC+AGG | + | chr3.1:9773368-9773387 | MS.gene039628:CDS | 40.0% |
| !! | CCACTTTTGCAGTTCTCAAT+AGG | - | chr3.1:9772341-9772360 | None:intergenic | 40.0% |
| AAAGAACTCCAATATGCGCG+AGG | + | chr3.1:9772003-9772022 | MS.gene039628:intron | 45.0% | |
| AAATGCTTCAGTGGAACTGC+TGG | - | chr3.1:9772824-9772843 | None:intergenic | 45.0% | |
| AAGAATTCAGGTCAAGGCCA+AGG | + | chr3.1:9773271-9773290 | MS.gene039628:CDS | 45.0% | |
| ACAAGGACGGACAACTTACA+AGG | - | chr3.1:9773128-9773147 | None:intergenic | 45.0% | |
| ACCTTTCCACAGCCAATTTC+AGG | - | chr3.1:9772464-9772483 | None:intergenic | 45.0% | |
| AGAATTCAGGTCAAGGCCAA+GGG | + | chr3.1:9773272-9773291 | MS.gene039628:CDS | 45.0% | |
| AGCTCGCCTTACAATCTTCA+AGG | - | chr3.1:9772256-9772275 | None:intergenic | 45.0% | |
| CAAGGACGGACAACTTACAA+GGG | - | chr3.1:9773127-9773146 | None:intergenic | 45.0% | |
| CAAGTAAAGCCGTTTGTGTG+TGG | + | chr3.1:9773024-9773043 | MS.gene039628:CDS | 45.0% | |
| CGCTATTACTGCCAATTCTG+CGG | + | chr3.1:9770961-9770980 | MS.gene039628:CDS | 45.0% | |
| CGTCACCTTCTACAACATCA+AGG | + | chr3.1:9772299-9772318 | MS.gene039628:CDS | 45.0% | |
| GGCCTTGGTGAAATAGTATC+AGG | + | chr3.1:9772036-9772055 | MS.gene039628:intron | 45.0% | |
| GTATGTCCTGAAATTGGCTG+TGG | + | chr3.1:9772455-9772474 | MS.gene039628:CDS | 45.0% | |
| GTCACGCTCAATTCAAAACG+AGG | + | chr3.1:9772101-9772120 | MS.gene039628:intron | 45.0% | |
| GTGTGTGGGTTTCCTAATTG+TGG | + | chr3.1:9773039-9773058 | MS.gene039628:CDS | 45.0% | |
| TAAGGCGAGCTACAGAAGAA+AGG | + | chr3.1:9772265-9772284 | MS.gene039628:CDS | 45.0% | |
| TATGCAAAGCCATTCCCTTG+AGG | + | chr3.1:9771541-9771560 | MS.gene039628:CDS | 45.0% | |
| TCCTGAAATTGGCTGTGGAA+AGG | + | chr3.1:9772460-9772479 | MS.gene039628:CDS | 45.0% | |
| TGAAACGGAACCTGAATCAG+AGG | + | chr3.1:9771448-9771467 | MS.gene039628:CDS | 45.0% | |
| TTCAAACCAGCCTCTGATTC+AGG | - | chr3.1:9771461-9771480 | None:intergenic | 45.0% | |
| ! | ATTTTCACCACTACGAGGAG+GGG | - | chr3.1:9772423-9772442 | None:intergenic | 45.0% |
| ! | CAATGCTAGTATGATGGAGG+AGG | - | chr3.1:9772894-9772913 | None:intergenic | 45.0% |
| ! | GATTTTCACCACTACGAGGA+GGG | - | chr3.1:9772424-9772443 | None:intergenic | 45.0% |
| ! | TGATTTTCACCACTACGAGG+AGG | - | chr3.1:9772425-9772444 | None:intergenic | 45.0% |
| ! | TTTTGAATTGAGCGTGACCG+AGG | - | chr3.1:9772099-9772118 | None:intergenic | 45.0% |
| CCTCCTGAGAAGCTTCATCA+AGG | + | chr3.1:9772067-9772086 | MS.gene039628:intron | 50.0% | |
| CCTTGATGAAGCTTCTCAGG+AGG | - | chr3.1:9772070-9772089 | None:intergenic | 50.0% | |
| CGAGCCTAACTGCAGAATGA+AGG | - | chr3.1:9772636-9772655 | None:intergenic | 50.0% | |
| GAATTCAGGTCAAGGCCAAG+GGG | + | chr3.1:9773273-9773292 | MS.gene039628:CDS | 50.0% | |
| !! | AACTGCTGGCTTCATGTGTG+CGG | - | chr3.1:9772810-9772829 | None:intergenic | 50.0% |
| ACGGAACCTGAATCAGAGGC+TGG | + | chr3.1:9771452-9771471 | MS.gene039628:CDS | 55.0% | |
| AGTTCTACCCCTCCTCGTAG+TGG | + | chr3.1:9772413-9772432 | MS.gene039628:CDS | 55.0% | |
| GAAGTGGTGTGCTTAGAGCC+TGG | + | chr3.1:9772664-9772683 | MS.gene039628:CDS | 55.0% | |
| TTTCTCTTCACCCCTCCCCT+TGG | - | chr3.1:9773291-9773310 | None:intergenic | 55.0% | |
| GCGTGATGCCTCGCGCATAT+TGG | - | chr3.1:9772014-9772033 | None:intergenic | 60.0% | |
| TCAGGTCAAGGCCAAGGGGA+GGG | + | chr3.1:9773277-9773296 | MS.gene039628:CDS | 60.0% | |
| TTCAGGTCAAGGCCAAGGGG+AGG | + | chr3.1:9773276-9773295 | MS.gene039628:CDS | 60.0% | |
| ! | TATGCGCGAGGCATCACGCT+TGG | + | chr3.1:9772015-9772034 | MS.gene039628:intron | 60.0% |
| CAGGTCAAGGCCAAGGGGAG+GGG | + | chr3.1:9773278-9773297 | MS.gene039628:CDS | 65.0% | |
| ! | CGAGGCATCACGCTTGGCCT+TGG | + | chr3.1:9772021-9772040 | MS.gene039628:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 9770910 | 9773401 | 9770910 | ID=MS.gene039628 |
| chr3.1 | mRNA | 9770910 | 9773401 | 9770910 | ID=MS.gene039628.t1;Parent=MS.gene039628 |
| chr3.1 | exon | 9770910 | 9771038 | 9770910 | ID=MS.gene039628.t1.exon1;Parent=MS.gene039628.t1 |
| chr3.1 | CDS | 9770910 | 9771038 | 9770910 | ID=cds.MS.gene039628.t1;Parent=MS.gene039628.t1 |
| chr3.1 | exon | 9771425 | 9771562 | 9771425 | ID=MS.gene039628.t1.exon2;Parent=MS.gene039628.t1 |
| chr3.1 | CDS | 9771425 | 9771562 | 9771425 | ID=cds.MS.gene039628.t1;Parent=MS.gene039628.t1 |
| chr3.1 | exon | 9772236 | 9772527 | 9772236 | ID=MS.gene039628.t1.exon3;Parent=MS.gene039628.t1 |
| chr3.1 | CDS | 9772236 | 9772527 | 9772236 | ID=cds.MS.gene039628.t1;Parent=MS.gene039628.t1 |
| chr3.1 | exon | 9772647 | 9772882 | 9772647 | ID=MS.gene039628.t1.exon4;Parent=MS.gene039628.t1 |
| chr3.1 | CDS | 9772647 | 9772882 | 9772647 | ID=cds.MS.gene039628.t1;Parent=MS.gene039628.t1 |
| chr3.1 | exon | 9772985 | 9773128 | 9772985 | ID=MS.gene039628.t1.exon5;Parent=MS.gene039628.t1 |
| chr3.1 | CDS | 9772985 | 9773128 | 9772985 | ID=cds.MS.gene039628.t1;Parent=MS.gene039628.t1 |
| chr3.1 | exon | 9773249 | 9773401 | 9773249 | ID=MS.gene039628.t1.exon6;Parent=MS.gene039628.t1 |
| chr3.1 | CDS | 9773249 | 9773401 | 9773249 | ID=cds.MS.gene039628.t1;Parent=MS.gene039628.t1 |
| Gene Sequence |
| Protein sequence |
