AlfalfaGEDB | MS.gene012143

M. sativa cultivar XinJiangDaYe / MS.gene012143

KEGG: K06184
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0008144 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00005.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012143.t1	XP_024629125.1	99	715	5	1	1	715	1	713	0.00E+00	1158.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012143.t1	Q9M1H3	75.8	724	165	3	1	715	1	723	1.8e-282	973.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012143.t1	G7LB54	99.0	715	5	1	1	715	54	766	0.0e+00	1158.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene028666	MS.gene012143	PPI
MS.gene044268	MS.gene012143	PPI
MS.gene050086	MS.gene012143	PPI
MS.gene054719	MS.gene012143	PPI
MS.gene25771	MS.gene012143	PPI
MS.gene31234	MS.gene012143	PPI
MS.gene40858	MS.gene012143	PPI
MS.gene69745	MS.gene012143	PPI
MS.gene70530	MS.gene012143	PPI
MS.gene98065	MS.gene012143	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012143.t1	MTR_8g075040	99.161	715	4	1	1	715	54	766	0.0	1440
MS.gene012143.t1	MTR_7g018380	98.182	715	13	0	1	715	1	715	0.0	1431
MS.gene012143.t1	MTR_1g066620	91.622	561	45	2	156	715	2	561	0.0	1057
MS.gene012143.t1	MTR_3g080970	39.645	676	358	14	41	705	74	710	1.72e-154	465
MS.gene012143.t1	MTR_2g095440	41.155	554	293	6	152	705	62	582	1.77e-149	448
MS.gene012143.t1	MTR_2g095440	40.942	552	293	6	154	705	4	522	1.53e-148	443
MS.gene012143.t1	MTR_2g095440	41.091	550	291	6	156	705	12	528	1.84e-148	443
MS.gene012143.t1	MTR_4g057795	41.155	554	293	7	152	705	62	582	4.14e-146	439
MS.gene012143.t1	MTR_4g057795	40.873	504	265	7	202	705	2	472	1.36e-129	393
MS.gene012143.t1	MTR_3g095010	29.561	592	366	14	144	715	96	656	5.17e-62	220

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012143.t1	AT3G54540	78.404	727	141	6	1	715	1	723	0.0	1136
MS.gene012143.t1	AT3G54540	78.404	727	141	6	1	715	1	723	0.0	1136
MS.gene012143.t1	AT1G64550	39.435	672	346	14	52	705	83	711	5.80e-156	469
MS.gene012143.t1	AT5G60790	41.441	555	290	7	152	705	67	587	7.54e-147	441
MS.gene012143.t1	AT5G64840	28.998	569	367	9	145	703	89	630	7.44e-65	228
MS.gene012143.t1	AT5G09930	30.366	573	356	14	144	703	74	616	6.18e-62	220
MS.gene012143.t1	AT1G67940	32.558	215	103	9	161	366	37	218	2.75e-13	71.2
MS.gene012143.t1	AT3G28345	30.556	216	124	7	481	673	988	1200	3.79e-13	73.9
MS.gene012143.t1	AT2G36910	30.097	206	109	7	487	666	367	563	4.54e-13	73.6
MS.gene012143.t1	AT3G28390	31.718	227	112	10	493	691	985	1196	6.75e-13	73.2

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Find 168 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAAGCAAGAGCAA+GGG	0.661346	8.4:-29974033	MS.gene012143:CDS
AAAAGCTGATAAGCCTAAAA+AGG	0.327285	8.4:-29975252	MS.gene012143:CDS
AAATTTCCCTGGAACATTTG+AGG	0.468288	8.4:-29973293	MS.gene012143:CDS
AAGTAGAGGTACCACACAAG+TGG	0.606298	8.4:-29973987	MS.gene012143:CDS
AAGTGGAGGTGTGAGTTCAG+TGG	0.595199	8.4:+29973930	None:intergenic
AATATAGCTTCTGGTGAAGA+AGG	0.461252	8.4:-29974624	MS.gene012143:CDS
AATCCTTTAGTGGCGGCTGG+AGG	0.632477	8.4:-29974440	MS.gene012143:CDS
AATGAAGTTTCAAATCATGC+AGG	0.564833	8.4:+29974229	None:intergenic
ACACTGCTGAATCTTCTAGC+TGG	0.589769	8.4:-29973781	MS.gene012143:CDS
ACATCAATATTCTTAGGTAC+CGG	0.565113	8.4:+29974756	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTGATAAGCCTAAAA+AGG	-	chr8.4:29973359-29973378	MS.gene012143:CDS	30.0%
AATGAAGTTTCAAATCATGC+AGG	+	chr8.4:29974385-29974404	None:intergenic	30.0%
ACATCAATATTCTTAGGTAC+CGG	+	chr8.4:29973858-29973877	None:intergenic	30.0%
AGAAGGACATCAATATTCTT+AGG	+	chr8.4:29973864-29973883	None:intergenic	30.0%
ATATCTCATGGAAAACGTTA+TGG	-	chr8.4:29973768-29973787	MS.gene012143:CDS	30.0%
ATGAACAATTACAACTGATG+GGG	-	chr8.4:29974069-29974088	MS.gene012143:CDS	30.0%
GAAAACGTTATGGTTTGATT+GGG	-	chr8.4:29973778-29973797	MS.gene012143:CDS	30.0%
GATCTACAAAATATAGCTTC+TGG	-	chr8.4:29973978-29973997	MS.gene012143:CDS	30.0%
GGATAAAGATGATACTAATG+AGG	-	chr8.4:29974013-29974032	MS.gene012143:CDS	30.0%
GTATGAACAATTACAACTGA+TGG	-	chr8.4:29974067-29974086	MS.gene012143:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	29973243	29975390	29973243	ID=MS.gene012143
chr8.4	mRNA	29973243	29975390	29973243	ID=MS.gene012143.t1;Parent=MS.gene012143
chr8.4	exon	29973243	29975390	29973243	ID=MS.gene012143.t1.exon1;Parent=MS.gene012143.t1
chr8.4	CDS	29973243	29975390	29973243	ID=cds.MS.gene012143.t1;Parent=MS.gene012143.t1

Gene Sequence

>MS.gene012143

ATGGGTAAGAAAAAGTCAGAGGATGCAGGTCCATCTTCAAAGGCTAAACCAGGTAGCAAAGATGTTTCTAAGAAGGAAAAGTTTTCTGTCTCTGCCATGTTGGCAGGTATGGATGAAAAAGCTGATAAGCCTAAAAAGGCATCTTCGAATAAGGCGAAGCCAAAACCTGCCCCGAAAGCTTCTGCATACACTGATGATATTGATCTTCCTCCCTCTGATGATGATGAGTCTGAAGAGGAGCAAGAGGAAAAGCATAGGCCAGATTTGAAGCCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGAGAAAAGAAAGATATTTTAGCTGCCCATGTGGCTGAACAGGCAAAGAAGGAAGCTCTTAGGGATGATCGTGATGCTTTCACTGTTGTAATTGGAAGTCGGGCTTCAGTGCTTGATGGAGACGATGGTGCTGATGCTAATGTCAAAGATATAACGATAGAAAATTTTTCTGTGGCTGCTCGGGGTAAAGAACTTCTGAAGAATACTTCAGTGAAGATATCTCATGGAAAACGTTATGGTTTGATTGGGCCGAATGGAATGGGCAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTATTAAAATTCGACAAAAAGTTGCTGATCTACAAAATATAGCTTCTGGTGAAGAAGGCATGGATAAAGATGATACTAATGAGGAAGAGGATGCGGGAGAAAAGCTAGCAGAGCTGTATGAACAATTACAACTGATGGGGTCTGATGCTGCTGAATCTCAAGCGTCAAAGATTTTAGCTGGTCTGGGTTTTACAAAGGACATGCAGGGCCGTCCTACAAAATCCTTTAGTGGCGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACTTGAGGGCTGTTCTGTGGCTAGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCACACGATAGAGATTTTCTCAATACAGTGTGCTCTGAGATTATTCACCTGCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGAGTGGGTATGAACAGCGTCGTAGAGAAGCGAATAAGAAGTATGAGACTTTTGACAAGCAATTGAAAGCAGCTAGAAGAACCGGGAACAAGGCTCAACAAGATAAGGTGAAGGACCGAGCTAAGTTCGCAGCAGCGAAGGAATCGAAAAGCAAAAGCAAGAGCAAGGGTAAGGTTGATGAGGATGAGACCCAAGTAGAGGTACCACACAAGTGGAGGGACTACAGCGTGGAGTTCCACTTTCCTGAACCCACTGAACTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGTTACCCAAACCGAGAGGATTTTAGGCTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATCGTTGGGCCTAATGGTGCTGGAAAATCTACACTGCTGAATCTTCTAGCTGGTGATTTGGTTCCAAGTGAAGGTGAAGTTCGAAGAAGTCAGAAGTTGAGGATAGGGAGATATTCCCAACACTTTGTGGACCTACTAACAATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAGGGGCTTAGTAAGCAAGAGGCTGTTCGTGCAAAACTTGGTAAATATGGGCTACCTAGTCATAACCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTATTCACATCGATATCCATGTCAAGACCTCACATTTTATTGTTAGATGAACCTACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCTGATGCGCTGGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCATGTGTCTGTGATGATGAAGAACGGAGTCAAATATGGGTTGTTGAAGATGGCACTGTTAGAAATTTCCCTGGAACATTTGAGGATTACAAGGAAGATCTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA

Protein sequence

>MS.gene012143.t1

MGKKKSEDAGPSSKAKPGSKDVSKKEKFSVSAMLAGMDEKADKPKKASSNKAKPKPAPKASAYTDDIDLPPSDDDESEEEQEEKHRPDLKPLEVSIAEKELKKREKKDILAAHVAEQAKKEALRDDRDAFTVVIGSRASVLDGDDGADANVKDITIENFSVAARGKELLKNTSVKISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANVELIKIRQKVADLQNIASGEEGMDKDDTNEEEDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDLKLHFYRGNFDAFESGYEQRRREANKKYETFDKQLKAARRTGNKAQQDKVKDRAKFAAAKESKSKSKSKGKVDEDETQVEVPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKYGLPSHNHLTPIVKLSGGQKARVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISCVCDDEERSQIWVVEDGTVRNFPGTFEDYKEDLLKEIKAEVDD