AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028666

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028666.t1 MTR_2g095440 98.487 595 4 1 1 595 1 590 0.0 1211
MS.gene028666.t1 MTR_2g095440 99.431 527 3 0 69 595 4 530 0.0 1093
MS.gene028666.t1 MTR_2g095440 99.810 525 1 0 71 595 12 536 0.0 1091
MS.gene028666.t1 MTR_4g057795 89.748 556 57 0 40 595 35 590 0.0 1060
MS.gene028666.t1 MTR_4g057795 89.562 479 50 0 117 595 2 480 0.0 914
MS.gene028666.t1 MTR_3g080970 42.486 539 285 6 67 584 173 707 2.27e-152 455
MS.gene028666.t1 MTR_7g018380 40.541 555 289 6 67 584 152 702 4.53e-147 441
MS.gene028666.t1 MTR_8g075040 41.591 553 284 7 67 584 205 753 4.45e-145 438
MS.gene028666.t1 MTR_1g066620 42.000 550 280 10 71 584 2 548 1.88e-144 429
MS.gene028666.t1 MTR_3g095010 30.654 535 347 8 65 579 102 632 2.92e-70 240
MS.gene028666.t1 MTR_3g095010 26.316 247 149 4 69 311 433 650 2.59e-19 92.4
MS.gene028666.t1 MTR_4g109720 26.122 245 128 9 384 593 391 617 5.42e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028666.t1 AT5G60790 84.767 558 85 0 38 595 38 595 0.0 1014
MS.gene028666.t1 AT3G54540 43.494 561 271 10 67 588 161 714 1.43e-155 464
MS.gene028666.t1 AT3G54540 43.494 561 271 10 67 588 161 714 1.43e-155 464
MS.gene028666.t1 AT1G64550 43.519 540 279 6 67 584 173 708 2.96e-154 460
MS.gene028666.t1 AT5G64840 30.420 572 373 8 30 579 56 624 4.30e-74 250
MS.gene028666.t1 AT5G64840 27.350 234 139 5 69 299 425 630 1.85e-17 86.7
MS.gene028666.t1 AT5G09930 30.561 553 357 9 51 583 69 614 2.70e-72 245
MS.gene028666.t1 AT5G09930 24.066 241 138 4 69 299 411 616 2.74e-15 79.7

Find 154 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCCCAAGATTTCCTTAA+TGG 0.133001 2.1:+8121039 MS.gene028666:CDS
GAAGAAATTTGACCGTATTT+TGG 0.193189 2.1:+8121005 MS.gene028666:CDS
ATCCTTTCTTCCTCATTTCC+AGG 0.254068 2.1:-8121651 None:intergenic
ATCCTCTCTCTAGGGATATT+CGG 0.262407 2.1:+8118289 MS.gene028666:CDS
CGCCACCGCTTCATCGAAAA+AGG 0.269459 2.1:+8118179 MS.gene028666:CDS
TCTGAGTTGGAGCTAAATTA+TGG 0.275758 2.1:+8119605 MS.gene028666:CDS
AGAGCAGCTATTGGGAAGTT+TGG 0.294434 2.1:+8121675 MS.gene028666:CDS
GGAGAAAGAAGCTGAAATTC+TGG 0.295585 2.1:+8119919 MS.gene028666:CDS
CCCACCTGTTCTCCAGTTTG+TGG 0.300584 2.1:+8121368 MS.gene028666:CDS
TGACGAGGAAAGGTTGAAAT+TGG 0.301469 2.1:+8119898 MS.gene028666:CDS
AAGGAATACATTGCACGATT+TGG 0.328195 2.1:+8121207 MS.gene028666:CDS
GATAGTGTTGCTAACGGAAT+TGG 0.333903 2.1:+8118219 MS.gene028666:CDS
ATCAGGTGGCCCATGAGATA+TGG 0.335843 2.1:+8121916 MS.gene028666:CDS
GGTGATTTGGTTCCTTTAGA+TGG 0.339333 2.1:+8121522 MS.gene028666:CDS
GAAGCTTATGACAGGTGATT+TGG 0.339539 2.1:+8121509 MS.gene028666:CDS
TTCTTGTAGATGAGATTATC+AGG 0.347827 2.1:-8121411 None:intergenic
CAGATGGGAAGGTGATATTA+TGG 0.351979 2.1:+8121962 MS.gene028666:CDS
TATTTGTGCAGACACCATTA+AGG 0.358821 2.1:-8121053 None:intergenic
CAGTTTGTGGAGGTGACATT+TGG 0.361508 2.1:+8121381 MS.gene028666:CDS
GAATGGTTGGGTTCATAAAC+AGG 0.363149 2.1:-8120223 None:intergenic
TTTGTTCCCATCCTCTCTCT+AGG 0.366717 2.1:+8118280 MS.gene028666:CDS
CGTGCTCTTCCCAGCTCCAT+TGG 0.366938 2.1:-8121481 None:intergenic
TGTTCAGACACGTGCTGAAC+TGG 0.372673 2.1:+8121131 MS.gene028666:CDS
TCCTCTCTCTAGGGATATTC+GGG 0.375863 2.1:+8118290 MS.gene028666:CDS
GGGATACCAAGGTGATTTGT+AGG 0.378062 2.1:-8120260 None:intergenic
ATGGGATGGTGGCATGGTTC+TGG 0.379571 2.1:+8121869 MS.gene028666:CDS
CTCTGACATGTCTGCGTTGG+AGG 0.384118 2.1:+8119862 MS.gene028666:CDS
GTGCAATGCGAAGGTGATTA+TGG 0.388699 2.1:-8121557 None:intergenic
CCATCCGATAAATTTCTCAT+AGG 0.393413 2.1:-8121723 None:intergenic
ATAGTGTTGCTAACGGAATT+GGG 0.394864 2.1:+8118220 MS.gene028666:CDS
TGTCAGAGGCTTCAATTTCC+CGG 0.399457 2.1:-8119847 None:intergenic
TCGATATCTAAATGATTAGT+TGG 0.399920 2.1:-8121813 None:intergenic
GAAAGGATGAGAGCAGCTAT+TGG 0.409176 2.1:+8121666 MS.gene028666:CDS
TCTACGCTACTTACAGCAAT+AGG 0.411200 2.1:+8119776 MS.gene028666:CDS
TCTACAAGAACATCGACTTC+GGG 0.411849 2.1:+8121424 MS.gene028666:CDS
CTGGTTGGACCCAATGGAGC+TGG 0.414943 2.1:+8121471 MS.gene028666:CDS
ACCTCCACAAACTGGAGAAC+AGG 0.416071 2.1:-8121372 None:intergenic
TTCAGACGTTATGGTTTGCT+TGG 0.417788 2.1:+8119734 MS.gene028666:intron
CATAATATCACCTTCCCATC+TGG 0.420837 2.1:-8121961 None:intergenic
ATATCCATGTGGTCTGGAAT+AGG 0.420995 2.1:-8119812 None:intergenic
AGACACCATTAAGGAAATCT+TGG 0.427382 2.1:-8121044 None:intergenic
GATGCCTATGAGAAATTTAT+CGG 0.431894 2.1:+8121719 MS.gene028666:CDS
TGGATATTTATCACCTTAGC+CGG 0.433721 2.1:+8119828 MS.gene028666:CDS
CCCACCTGTACTGCTTCATC+TGG 0.435159 2.1:-8121161 None:intergenic
AATCACCTGTCATAAGCTTC+AGG 0.435857 2.1:-8121506 None:intergenic
ATTGGGAAGTTTGGATTGTC+GGG 0.439397 2.1:+8121684 MS.gene028666:CDS
GGGTCCAACCAGAGCAATCC+TGG 0.440264 2.1:-8121460 None:intergenic
TCTTTATCAGTTACTTTCCA+TGG 0.449572 2.1:+8119563 MS.gene028666:CDS
TCCTTTCTTCCTCATTTCCA+GGG 0.450321 2.1:-8121650 None:intergenic
GACTCCAGGATTGCTCTGGT+TGG 0.450992 2.1:+8121456 MS.gene028666:CDS
CAAATGTCACCTCCACAAAC+TGG 0.453285 2.1:-8121380 None:intergenic
GGATTTCAAGCTGCACCTAA+AGG 0.456483 2.1:+8121983 MS.gene028666:CDS
TATTGGGAAGTTTGGATTGT+CGG 0.456601 2.1:+8121683 MS.gene028666:CDS
TAGCCGAGGCATTGAATGAA+TGG 0.457369 2.1:+8121850 MS.gene028666:CDS
AAAGGATGAGAGCAGCTATT+GGG 0.460692 2.1:+8121667 MS.gene028666:CDS
TTTCTGGTGGATGGAGAATG+AGG 0.462028 2.1:+8120183 MS.gene028666:CDS
CAGCAAGTGAGGCTGTCTAT+AGG 0.465288 2.1:-8121778 None:intergenic
TTGTTCCCATCCTCTCTCTA+GGG 0.465863 2.1:+8118281 MS.gene028666:CDS
ACCCTGGAAATGAGGAAGAA+AGG 0.466407 2.1:+8121649 MS.gene028666:CDS
GTGCTCTTCCCAGCTCCATT+GGG 0.466440 2.1:-8121480 None:intergenic
GAGAAAGAAGCTGAAATTCT+GGG 0.473580 2.1:+8119920 MS.gene028666:CDS
TTTGGTTCCTTTAGATGGCA+TGG 0.476128 2.1:+8121527 MS.gene028666:CDS
TCAGGTGGCCCATGAGATAT+GGG 0.476686 2.1:+8121917 MS.gene028666:CDS
AGGCTTCAATTTCCCGGCTA+AGG 0.478428 2.1:-8119841 None:intergenic
TGATAAATATCCATGTGGTC+TGG 0.478691 2.1:-8119818 None:intergenic
TCTTCTCTTTACTCTGAGCT+TGG 0.478713 2.1:-8121254 None:intergenic
AGCTGAAATTCTGGGAGCAC+AGG 0.481031 2.1:+8119928 MS.gene028666:CDS
TTTAGACTCCAGGATTGCTC+TGG 0.486928 2.1:+8121452 MS.gene028666:CDS
TTTGGAAGCATGTGTGTGGC+TGG 0.492300 2.1:+8120972 MS.gene028666:CDS
CAAGCTGCACCTAAAGGAAA+AGG 0.496432 2.1:+8121989 MS.gene028666:CDS
TCGGGGTCGATTTAGACTCC+AGG 0.496794 2.1:+8121442 MS.gene028666:CDS
TGGTTTCAACAAGCAGATGC+AGG 0.504046 2.1:+8120142 MS.gene028666:CDS
ATCTACAAGAACATCGACTT+CGG 0.504426 2.1:+8121423 MS.gene028666:CDS
AGAACCAGATGAAGCAGTAC+AGG 0.507231 2.1:+8121157 MS.gene028666:CDS
AGGTTCGTCAAGTAGAAGAA+TGG 0.508275 2.1:-8120240 None:intergenic
GAATATCCCTAGAGAGAGGA+TGG 0.511159 2.1:-8118287 None:intergenic
TTGCTTGGATTGAACGGCTG+TGG 0.511780 2.1:+8119749 MS.gene028666:CDS
ATTGCTCTGGTTGGACCCAA+TGG 0.513877 2.1:+8121465 MS.gene028666:CDS
TCATTAGTTGTGACGAGGAA+AGG 0.515894 2.1:+8119888 MS.gene028666:CDS
CGACGAACCATGCCATCTAA+AGG 0.517489 2.1:-8121534 None:intergenic
GTGAAATCACAACCAAAATA+CGG 0.518081 2.1:-8121017 None:intergenic
GACACCATTAAGGAAATCTT+GGG 0.522650 2.1:-8121043 None:intergenic
TCTAATAGTTGATTCTGAGT+TGG 0.522759 2.1:+8119592 MS.gene028666:CDS
CCCTCCTCTCTTTGCAGCGG+CGG 0.522773 2.1:-8118148 None:intergenic
ATCCCATTCATTCAATGCCT+CGG 0.523753 2.1:-8121853 None:intergenic
GAAGCAGTACAGGTGGGAGC+AGG 0.526521 2.1:+8121167 MS.gene028666:CDS
TGGATTGTCGGGTAAAGCAC+AGG 0.529724 2.1:+8121695 MS.gene028666:CDS
AGCCGAGGCATTGAATGAAT+GGG 0.531518 2.1:+8121851 MS.gene028666:CDS
TTATTTATGTTCCAGGAGGA+TGG 0.532051 2.1:+8120026 MS.gene028666:intron
CAGCACACACCCATATCTCA+TGG 0.540856 2.1:-8121926 None:intergenic
GCCGCCGCTGCAAAGAGAGG+AGG 0.541617 2.1:+8118147 MS.gene028666:CDS
AGCCTCTGACATGTCTGCGT+TGG 0.547223 2.1:+8119859 MS.gene028666:CDS
CAACTATTAGATCATGTCCA+TGG 0.547850 2.1:-8119580 None:intergenic
AAAAGAGTACCCTGGAAATG+AGG 0.547885 2.1:+8121641 MS.gene028666:CDS
TATGGTTTGCTTGGATTGAA+CGG 0.549563 2.1:+8119743 MS.gene028666:CDS
ACCTGTTCTCCAGTTTGTGG+AGG 0.551730 2.1:+8121371 MS.gene028666:CDS
GCTGCCGCCGCTGCAAAGAG+AGG 0.556803 2.1:+8118144 MS.gene028666:CDS
ATATCTGATCGGACATGCAC+GGG 0.557255 2.1:+8118252 MS.gene028666:CDS
GGAGCAGATTGCCTCAATGA+AGG 0.557274 2.1:+8121188 MS.gene028666:CDS
CGTCAAGTAGAAGAATGGTT+GGG 0.557741 2.1:-8120235 None:intergenic
TGGTTGGACCCAATGGAGCT+GGG 0.558985 2.1:+8121472 MS.gene028666:CDS
TGCAATGTATTCCTTCATTG+AGG 0.559633 2.1:-8121199 None:intergenic
CGCTGCAAAGAGAGGAGGGA+AGG 0.560162 2.1:+8118152 MS.gene028666:CDS
CCGCCGCTGCAAAGAGAGGA+GGG 0.562371 2.1:+8118148 MS.gene028666:CDS
AAAGGCGTCGGAGAAGGCGG+TGG 0.562809 2.1:+8118197 MS.gene028666:CDS
AGTTGGAGCTAAATTATGGA+AGG 0.564374 2.1:+8119609 MS.gene028666:CDS
ACCAGATGAAGCAGTACAGG+TGG 0.568916 2.1:+8121160 MS.gene028666:CDS
ACGTTCCTGAAGCTTATGAC+AGG 0.572055 2.1:+8121501 MS.gene028666:CDS
TCGTCAAGTAGAAGAATGGT+TGG 0.572278 2.1:-8120236 None:intergenic
CAGATTTGGAAGCATGTGTG+TGG 0.572711 2.1:+8120968 MS.gene028666:intron
CTGATCAAACAGTGACCAGA+TGG 0.574106 2.1:+8121946 MS.gene028666:CDS
CCTATGAGAAATTTATCGGA+TGG 0.574573 2.1:+8121723 MS.gene028666:CDS
GGATATTTATCACCTTAGCC+GGG 0.580006 2.1:+8119829 MS.gene028666:CDS
GATATCTGATCGGACATGCA+CGG 0.582650 2.1:+8118251 MS.gene028666:CDS
CACAAACTGGAGAACAGGTG+GGG 0.584349 2.1:-8121367 None:intergenic
TCCACAAACTGGAGAACAGG+TGG 0.586563 2.1:-8121369 None:intergenic
ATGTTCCAGGAGGATGGTGG+TGG 0.591374 2.1:+8120032 MS.gene028666:intron
TACATTGCACGATTTGGCCA+TGG 0.600697 2.1:+8121213 MS.gene028666:CDS
TTTATGTTCCAGGAGGATGG+TGG 0.602285 2.1:+8120029 MS.gene028666:intron
CCACAAACTGGAGAACAGGT+GGG 0.611917 2.1:-8121368 None:intergenic
CTTCCCTCCTCTCTTTGCAG+CGG 0.612014 2.1:-8118151 None:intergenic
GAATGAATGGGATGGTGGCA+TGG 0.612616 2.1:+8121863 MS.gene028666:CDS
CTGCACCTAAAGGAAAAGGC+GGG 0.612988 2.1:+8121993 MS.gene028666:CDS
GAAATTTATCGGATGGACAA+AGG 0.614374 2.1:+8121730 MS.gene028666:CDS
TCATCTAATAGCAGCAAGTG+AGG 0.614956 2.1:-8121789 None:intergenic
GCGCGGTGGACTTACAGAGA+AGG 0.616834 2.1:+8121293 MS.gene028666:CDS
TAGTGTTGCTAACGGAATTG+GGG 0.617899 2.1:+8118221 MS.gene028666:CDS
CTACAAGAACATCGACTTCG+GGG 0.621409 2.1:+8121425 MS.gene028666:CDS
GACGAACCTACAAATCACCT+TGG 0.623677 2.1:+8120254 MS.gene028666:CDS
GCTTCCTATTCCAGACCACA+TGG 0.623990 2.1:+8119808 MS.gene028666:CDS
GCTGCACCTAAAGGAAAAGG+CGG 0.625202 2.1:+8121992 MS.gene028666:CDS
ACAAACTGGAGAACAGGTGG+GGG 0.628419 2.1:-8121366 None:intergenic
AGCACACACCCATATCTCAT+GGG 0.630239 2.1:-8121925 None:intergenic
CAAACAGTGACCAGATGGGA+AGG 0.631024 2.1:+8121951 MS.gene028666:CDS
AATATCCCTAGAGAGAGGAT+GGG 0.634635 2.1:-8118286 None:intergenic
GACAATTGACTCGTTAGCCG+AGG 0.636847 2.1:+8121836 MS.gene028666:CDS
CGGTGGACTTACAGAGAAGG+TGG 0.640373 2.1:+8121296 MS.gene028666:CDS
GGGATATTCAGATATCTGAT+CGG 0.640506 2.1:+8118241 MS.gene028666:CDS
GGAGTCGCGTGATCTTTGCA+TGG 0.644084 2.1:+8121751 MS.gene028666:CDS
GGTGAAATTGTGCAATGCGA+AGG 0.646343 2.1:-8121566 None:intergenic
TGATCAAACAGTGACCAGAT+GGG 0.653848 2.1:+8121947 MS.gene028666:CDS
GGCTGTCATTAGTTGTGACG+AGG 0.658773 2.1:+8119883 MS.gene028666:CDS
CCAGATGAAGCAGTACAGGT+GGG 0.659061 2.1:+8121161 MS.gene028666:CDS
GCGGTGGATAGTGTTGCTAA+CGG 0.662681 2.1:+8118213 MS.gene028666:CDS
ACCCGAATATCCCTAGAGAG+AGG 0.667222 2.1:-8118291 None:intergenic
CTCCAACGCAGACATGTCAG+AGG 0.671580 2.1:-8119861 None:intergenic
GCATTGAATGAATGGGATGG+TGG 0.687430 2.1:+8121858 MS.gene028666:CDS
TTTATGATAAAAGAGTACCC+TGG 0.697631 2.1:+8121633 MS.gene028666:CDS
GAGGCATTGAATGAATGGGA+TGG 0.699572 2.1:+8121855 MS.gene028666:CDS
GGAAGCATGTGTGTGGCTGG+AGG 0.706083 2.1:+8120975 MS.gene028666:CDS
AATGGTTGGGTTCATAAACA+GGG 0.707136 2.1:-8120222 None:intergenic
TAAGGTGATAAATATCCATG+TGG 0.717137 2.1:-8119823 None:intergenic
GGTCTGGAATAGGAAGCTCA+CGG 0.726335 2.1:-8119802 None:intergenic
GTTTCCCCACATCAACAAAG+CGG 0.731629 2.1:-8121341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTAATTAATTGTTATT+CGG + chr2.1:8118361-8118380 MS.gene028666:intron 10.0%
!! ATAATAAATATTTGCAGATT+TGG + chr2.1:8120954-8120973 MS.gene028666:intron 15.0%
!! GACAATTAAATGTATTTATA+TGG - chr2.1:8119475-8119494 None:intergenic 15.0%
!! TAATAATTAATTGAGAATCT+GGG - chr2.1:8119226-8119245 None:intergenic 15.0%
!! TTAATAATTAATTGAGAATC+TGG - chr2.1:8119227-8119246 None:intergenic 15.0%
!! TTCAATATTGAACAATAAAA+AGG + chr2.1:8119440-8119459 MS.gene028666:intron 15.0%
!!! AAAAAAACTAACACAATTTT+TGG - chr2.1:8118602-8118621 None:intergenic 15.0%
!!! AATTATTAATCCCATATTTT+CGG + chr2.1:8119238-8119257 MS.gene028666:intron 15.0%
!!! ACTTTTATTAACAAAATTAC+GGG + chr2.1:8118671-8118690 MS.gene028666:intron 15.0%
!!! GACTTTTATTAACAAAATTA+CGG + chr2.1:8118670-8118689 MS.gene028666:intron 15.0%
!!! GTTATTGATTAGTTTAATTT+TGG + chr2.1:8118331-8118350 MS.gene028666:intron 15.0%
!!! TACATTAACATCTAATTTTA+TGG + chr2.1:8120705-8120724 MS.gene028666:intron 15.0%
!!! TCAAAATCAATTTTTGTATT+AGG + chr2.1:8119041-8119060 MS.gene028666:intron 15.0%
!! AGAATTATGTTGAAATTTGA+AGG - chr2.1:8119106-8119125 None:intergenic 20.0%
!! GAACATAAATAAATAAAGTG+TGG - chr2.1:8120018-8120037 None:intergenic 20.0%
!! TAAGTCAGAAGATATAAATA+TGG - chr2.1:8119650-8119669 None:intergenic 20.0%
!! TTTCTTACTGTAATATTTGT+TGG + chr2.1:8119687-8119706 MS.gene028666:intron 20.0%
!! TTTGTTCTTTATGTTATGTA+TGG + chr2.1:8118401-8118420 MS.gene028666:intron 20.0%
!!! AAAAAAAAGCTTCTCTTTTA+AGG + chr2.1:8118808-8118827 MS.gene028666:intron 20.0%
!!! AAGAGAAGCTTTTTTTTTTT+TGG - chr2.1:8118805-8118824 None:intergenic 20.0%
!!! AAGCTTTTTTTTTTTTGGAA+TGG - chr2.1:8118800-8118819 None:intergenic 20.0%
!!! ACACTTCAAATTATTTTTCA+TGG - chr2.1:8119016-8119035 None:intergenic 20.0%
!!! ACTTTATTTATTTATGTTCC+AGG + chr2.1:8120019-8120038 MS.gene028666:intron 20.0%
!!! ATTAACATCTAATTTTATGG+AGG + chr2.1:8120708-8120727 MS.gene028666:intron 20.0%
!!! TTTTTCAATTGAAAATGATC+TGG + chr2.1:8119134-8119153 MS.gene028666:intron 20.0%
! AAAAACATTGCAAGATATGA+AGG - chr2.1:8120849-8120868 None:intergenic 25.0%
! AAAACATTGCAAGATATGAA+GGG - chr2.1:8120848-8120867 None:intergenic 25.0%
! ATATCTTCTGACTTATGAAT+AGG + chr2.1:8119655-8119674 MS.gene028666:intron 25.0%
! GTATGCTTTGATAAAACATT+TGG + chr2.1:8120540-8120559 MS.gene028666:intron 25.0%
! TAAGTGTTTATGCTATAATC+TGG - chr2.1:8118720-8118739 None:intergenic 25.0%
! TCAGACTAAATTCAATGTAT+TGG + chr2.1:8120810-8120829 MS.gene028666:intron 25.0%
! TCGATATCTAAATGATTAGT+TGG - chr2.1:8121816-8121835 None:intergenic 25.0%
! TCTATGACTTGAGTTTATAA+AGG - chr2.1:8118652-8118671 None:intergenic 25.0%
! TTATTTATTTATGTTCCAGG+AGG + chr2.1:8120022-8120041 MS.gene028666:intron 25.0%
! TTTCAACATAATTCTTGTCT+TGG + chr2.1:8119111-8119130 MS.gene028666:intron 25.0%
!! AAAGCATCATCATAACTAAA+AGG - chr2.1:8120791-8120810 None:intergenic 25.0%
!! AATGAAAGAGTTACTCTTTT+CGG - chr2.1:8120292-8120311 None:intergenic 25.0%
!! ACTGTTTTCATAATCTATTC+TGG + chr2.1:8118836-8118855 MS.gene028666:intron 25.0%
!! GTTGTATTCTATTGACATTT+TGG + chr2.1:8119516-8119535 MS.gene028666:intron 25.0%
!!! ATAAACAGAGATTTTGACAT+GGG - chr2.1:8119396-8119415 None:intergenic 25.0%
!!! TAACTTATTTTCAGACGTTA+TGG + chr2.1:8119725-8119744 MS.gene028666:intron 25.0%
!!! TTTTTAATTGAAGGTCACAT+GGG + chr2.1:8120395-8120414 MS.gene028666:intron 25.0%
!!! TTTTTTAATTGAAGGTCACA+TGG + chr2.1:8120394-8120413 MS.gene028666:intron 25.0%
AAAAAGCTGAAGTTCTATAC+TGG + chr2.1:8121093-8121112 MS.gene028666:CDS 30.0%
AAATAGAAGATGCAAGTGAA+TGG - chr2.1:8120651-8120670 None:intergenic 30.0%
ATCCATGTCTTATACTTGAT+AGG - chr2.1:8120446-8120465 None:intergenic 30.0%
CAGTCATAATAATCAGAACT+AGG - chr2.1:8118985-8119004 None:intergenic 30.0%
CATATATTGCATTGTATCTC+TGG + chr2.1:8119174-8119193 MS.gene028666:intron 30.0%
GACCAAAAGATTAGACTATA+AGG - chr2.1:8120897-8120916 None:intergenic 30.0%
GATGCCTATGAGAAATTTAT+CGG + chr2.1:8121719-8121738 MS.gene028666:CDS 30.0%
GTGAAATCACAACCAAAATA+CGG - chr2.1:8121020-8121039 None:intergenic 30.0%
GTTTGAAAAATTACCACCAA+GGG - chr2.1:8118963-8118982 None:intergenic 30.0%
TAAATTATTGTAGCTAGCGT+GGG + chr2.1:8119304-8119323 MS.gene028666:intron 30.0%
TAAGGTGATAAATATCCATG+TGG - chr2.1:8119826-8119845 None:intergenic 30.0%
TCAATGCATAAAACATGACA+AGG - chr2.1:8120337-8120356 None:intergenic 30.0%
TCTTACTCTGATATAGTCTT+GGG + chr2.1:8120750-8120769 MS.gene028666:intron 30.0%
TTCTTACTCTGATATAGTCT+TGG + chr2.1:8120749-8120768 MS.gene028666:intron 30.0%
TTCTTGTAGATGAGATTATC+AGG - chr2.1:8121414-8121433 None:intergenic 30.0%
TTGATGCTTTGTATCATCAT+GGG + chr2.1:8120595-8120614 MS.gene028666:intron 30.0%
TTTCATAAGTACTTACCGAA+CGG + chr2.1:8118886-8118905 MS.gene028666:intron 30.0%
TTTGATGCTTTGTATCATCA+TGG + chr2.1:8120594-8120613 MS.gene028666:intron 30.0%
! AACAATGAACAGAGTTGATT+TGG + chr2.1:8118492-8118511 MS.gene028666:intron 30.0%
! ATATAGTCTTGGGTAGTTAT+CGG + chr2.1:8120760-8120779 MS.gene028666:intron 30.0%
! ATGAAAGAGTTACTCTTTTC+GGG - chr2.1:8120291-8120310 None:intergenic 30.0%
! GAAGAAATTTGACCGTATTT+TGG + chr2.1:8121005-8121024 MS.gene028666:CDS 30.0%
! GGTACTCTTTTATCATAAAC+TGG - chr2.1:8121632-8121651 None:intergenic 30.0%
! GTCCTTATAGTCTAATCTTT+TGG + chr2.1:8120892-8120911 MS.gene028666:intron 30.0%
! TCTAATAGTTGATTCTGAGT+TGG + chr2.1:8119592-8119611 MS.gene028666:CDS 30.0%
! TCTTTATCAGTTACTTTCCA+TGG + chr2.1:8119563-8119582 MS.gene028666:CDS 30.0%
! TGATTTTAGGCTCATAAATC+AGG + chr2.1:8121899-8121918 MS.gene028666:CDS 30.0%
!! CATAAACAGAGATTTTGACA+TGG - chr2.1:8119397-8119416 None:intergenic 30.0%
!! GCTGAAATTTTATTTGGTCT+TGG + chr2.1:8120122-8120141 MS.gene028666:CDS 30.0%
!! GGATGATTAGTTCTTTTGTA+GGG + chr2.1:8118422-8118441 MS.gene028666:intron 30.0%
!! TGCTTTGAGTTAAGTTTTCT+TGG + chr2.1:8120516-8120535 MS.gene028666:intron 30.0%
!! TGGATGATTAGTTCTTTTGT+AGG + chr2.1:8118421-8118440 MS.gene028666:intron 30.0%
!! TTCTGGTTAGTCATGATTTT+AGG + chr2.1:8121886-8121905 MS.gene028666:CDS 30.0%
!! TTTATGATAAAAGAGTACCC+TGG + chr2.1:8121633-8121652 MS.gene028666:CDS 30.0%
!!! AATTTTTGGTGCTGAAAAAC+GGG - chr2.1:8118588-8118607 None:intergenic 30.0%
!!! CAATTTTTGGTGCTGAAAAA+CGG - chr2.1:8118589-8118608 None:intergenic 30.0%
!!! GACTCGTGTTTTTTAATTGA+AGG + chr2.1:8120386-8120405 MS.gene028666:intron 30.0%
AAGGAATACATTGCACGATT+TGG + chr2.1:8121207-8121226 MS.gene028666:CDS 35.0%
AATGGTTGGGTTCATAAACA+GGG - chr2.1:8120225-8120244 None:intergenic 35.0%
ACGAACAAACTAGAACTAGA+AGG - chr2.1:8120479-8120498 None:intergenic 35.0%
AGACACCATTAAGGAAATCT+TGG - chr2.1:8121047-8121066 None:intergenic 35.0%
AGAGAAGACTCTTGCAAAAA+TGG + chr2.1:8121269-8121288 MS.gene028666:CDS 35.0%
AGTTGGAGCTAAATTATGGA+AGG + chr2.1:8119609-8119628 MS.gene028666:CDS 35.0%
CAACTATTAGATCATGTCCA+TGG - chr2.1:8119583-8119602 None:intergenic 35.0%
CCATCCGATAAATTTCTCAT+AGG - chr2.1:8121726-8121745 None:intergenic 35.0%
CCGTAAAAGCAAAACAACTT+GGG - chr2.1:8119989-8120008 None:intergenic 35.0%
CCTATGAGAAATTTATCGGA+TGG + chr2.1:8121723-8121742 MS.gene028666:CDS 35.0%
CGAACAAACTAGAACTAGAA+GGG - chr2.1:8120478-8120497 None:intergenic 35.0%
CTAAATTATTGTAGCTAGCG+TGG + chr2.1:8119303-8119322 MS.gene028666:intron 35.0%
CTTAACTCAAAGCAACATAG+AGG - chr2.1:8120510-8120529 None:intergenic 35.0%
CTTGACTGAAAAACTAGACT+TGG + chr2.1:8121593-8121612 MS.gene028666:CDS 35.0%
GAAATATTACCTACCTCTGA+AGG - chr2.1:8119423-8119442 None:intergenic 35.0%
GAAATTTATCGGATGGACAA+AGG + chr2.1:8121730-8121749 MS.gene028666:CDS 35.0%
GACACCATTAAGGAAATCTT+GGG - chr2.1:8121046-8121065 None:intergenic 35.0%
GAGAAAGAAGCTGAAATTCT+GGG + chr2.1:8119920-8119939 MS.gene028666:CDS 35.0%
GCCAAAATGATTTCACTCTT+CGG - chr2.1:8118543-8118562 None:intergenic 35.0%
GCGTTACATTTATCCAATCA+GGG - chr2.1:8118565-8118584 None:intergenic 35.0%
GCTTTGATAAAACATTTGGC+AGG + chr2.1:8120544-8120563 MS.gene028666:intron 35.0%
GGGATATTCAGATATCTGAT+CGG + chr2.1:8118241-8118260 MS.gene028666:CDS 35.0%
GGTTTGAAAAATTACCACCA+AGG - chr2.1:8118964-8118983 None:intergenic 35.0%
GTTGAAATTTGAAGGACACA+AGG - chr2.1:8119098-8119117 None:intergenic 35.0%
TAAGCACTTATAAACCCGTT+CGG - chr2.1:8118904-8118923 None:intergenic 35.0%
TATTGGGAAGTTTGGATTGT+CGG + chr2.1:8121683-8121702 MS.gene028666:CDS 35.0%
TATTTGTGCAGACACCATTA+AGG - chr2.1:8121056-8121075 None:intergenic 35.0%
TCCGTAAAAGCAAAACAACT+TGG - chr2.1:8119990-8120009 None:intergenic 35.0%
TCTGGAAAAAAAGAGAGAAC+TGG + chr2.1:8119192-8119211 MS.gene028666:intron 35.0%
TCTGTTTATGAATCCTTCAG+AGG + chr2.1:8119407-8119426 MS.gene028666:intron 35.0%
TGATAAATATCCATGTGGTC+TGG - chr2.1:8119821-8119840 None:intergenic 35.0%
TGCAATGTATTCCTTCATTG+AGG - chr2.1:8121202-8121221 None:intergenic 35.0%
TGCCTATCAAGTATAAGACA+TGG + chr2.1:8120441-8120460 MS.gene028666:intron 35.0%
TGGATATTTATCACCTTAGC+CGG + chr2.1:8119828-8119847 MS.gene028666:CDS 35.0%
TTATTTATGTTCCAGGAGGA+TGG + chr2.1:8120026-8120045 MS.gene028666:intron 35.0%
TTCATAAGTACTTACCGAAC+GGG + chr2.1:8118887-8118906 MS.gene028666:intron 35.0%
TTTATGAATCCTTCAGAGGT+AGG + chr2.1:8119411-8119430 MS.gene028666:intron 35.0%
! AAGAAGACACGTGATTTTTC+TGG + chr2.1:8120167-8120186 MS.gene028666:CDS 35.0%
! ATAGTGTTGCTAACGGAATT+GGG + chr2.1:8118220-8118239 MS.gene028666:CDS 35.0%
! CACTTGAACGAGTTTTTGAA+CGG + chr2.1:8120060-8120079 MS.gene028666:CDS 35.0%
! TCCGAAGAGTGAAATCATTT+TGG + chr2.1:8118539-8118558 MS.gene028666:intron 35.0%
! TCTGAGTTGGAGCTAAATTA+TGG + chr2.1:8119605-8119624 MS.gene028666:CDS 35.0%
! TGAAAGAGTTACTCTTTTCG+GGG - chr2.1:8120290-8120309 None:intergenic 35.0%
! TTTTAGGCTCATAAATCAGG+TGG + chr2.1:8121902-8121921 MS.gene028666:CDS 35.0%
!! ATCTACAAGAACATCGACTT+CGG + chr2.1:8121423-8121442 MS.gene028666:CDS 35.0%
!! CCCAAGTTGTTTTGCTTTTA+CGG + chr2.1:8119986-8120005 MS.gene028666:intron 35.0%
!! CGTGCTGCTGAAATTTTATT+TGG + chr2.1:8120116-8120135 MS.gene028666:CDS 35.0%
!! CTAGTTCTAGTTTGTTCGTT+GGG + chr2.1:8120480-8120499 MS.gene028666:intron 35.0%
!! TATGGTTTGCTTGGATTGAA+CGG + chr2.1:8119743-8119762 MS.gene028666:CDS 35.0%
!! TCTAGTTCTAGTTTGTTCGT+TGG + chr2.1:8120479-8120498 MS.gene028666:intron 35.0%
!!! ATTTTTGGTGCTGAAAAACG+GGG - chr2.1:8118587-8118606 None:intergenic 35.0%
!!! TCAGCTTTTTGTTTTGCATG+TGG - chr2.1:8121083-8121102 None:intergenic 35.0%
AAAGGATGAGAGCAGCTATT+GGG + chr2.1:8121667-8121686 MS.gene028666:CDS 40.0%
AATATCCCTAGAGAGAGGAT+GGG - chr2.1:8118289-8118308 None:intergenic 40.0%
AATCACCTGTCATAAGCTTC+AGG - chr2.1:8121509-8121528 None:intergenic 40.0%
AGGTTCGTCAAGTAGAAGAA+TGG - chr2.1:8120243-8120262 None:intergenic 40.0%
ATCCCATTCATTCAATGCCT+CGG - chr2.1:8121856-8121875 None:intergenic 40.0%
ATCCTTTCTTCCTCATTTCC+AGG - chr2.1:8121654-8121673 None:intergenic 40.0%
ATGCCAGTGTCCGAAAATAT+GGG - chr2.1:8119251-8119270 None:intergenic 40.0%
ATTGGGAAGTTTGGATTGTC+GGG + chr2.1:8121684-8121703 MS.gene028666:CDS 40.0%
CACTCCCAAGATTTCCTTAA+TGG + chr2.1:8121039-8121058 MS.gene028666:CDS 40.0%
CAGATGGGAAGGTGATATTA+TGG + chr2.1:8121962-8121981 MS.gene028666:CDS 40.0%
CATAATATCACCTTCCCATC+TGG - chr2.1:8121964-8121983 None:intergenic 40.0%
CGTCAAGTAGAAGAATGGTT+GGG - chr2.1:8120238-8120257 None:intergenic 40.0%
GAAAAAAGCTGCTCAGAAGA+AGG + chr2.1:8118122-8118141 MS.gene028666:CDS 40.0%
GAAGCTTATGACAGGTGATT+TGG + chr2.1:8121509-8121528 MS.gene028666:CDS 40.0%
GAATGGTTGGGTTCATAAAC+AGG - chr2.1:8120226-8120245 None:intergenic 40.0%
GGAGAAAGAAGCTGAAATTC+TGG + chr2.1:8119919-8119938 MS.gene028666:CDS 40.0%
GGATATTTATCACCTTAGCC+GGG + chr2.1:8119829-8119848 MS.gene028666:CDS 40.0%
GGCGTTACATTTATCCAATC+AGG - chr2.1:8118566-8118585 None:intergenic 40.0%
TATGCCAGTGTCCGAAAATA+TGG - chr2.1:8119252-8119271 None:intergenic 40.0%
TCATCTAATAGCAGCAAGTG+AGG - chr2.1:8121792-8121811 None:intergenic 40.0%
TCATTAGTTGTGACGAGGAA+AGG + chr2.1:8119888-8119907 MS.gene028666:CDS 40.0%
TCCTTTCTTCCTCATTTCCA+GGG - chr2.1:8121653-8121672 None:intergenic 40.0%
TCGTCAAGTAGAAGAATGGT+TGG - chr2.1:8120239-8120258 None:intergenic 40.0%
TCTACGCTACTTACAGCAAT+AGG + chr2.1:8119776-8119795 MS.gene028666:CDS 40.0%
TCTTCTCTTTACTCTGAGCT+TGG - chr2.1:8121257-8121276 None:intergenic 40.0%
TGACGAGGAAAGGTTGAAAT+TGG + chr2.1:8119898-8119917 MS.gene028666:CDS 40.0%
TGATCAAACAGTGACCAGAT+GGG + chr2.1:8121947-8121966 MS.gene028666:CDS 40.0%
TTTGGTCGTATAGCATAGCT+GGG + chr2.1:8120910-8120929 MS.gene028666:intron 40.0%
! AAGACACGTGATTTTTCTGG+TGG + chr2.1:8120170-8120189 MS.gene028666:CDS 40.0%
! AATCCCATATTTTCGGACAC+TGG + chr2.1:8119245-8119264 MS.gene028666:intron 40.0%
! AATTTCAGCAGCACGCTTTT+CGG - chr2.1:8120111-8120130 None:intergenic 40.0%
! ATAAACCCGCCTTTTCCTTT+AGG - chr2.1:8122001-8122020 None:intergenic 40.0%
! ATATCCATGTGGTCTGGAAT+AGG - chr2.1:8119815-8119834 None:intergenic 40.0%
! ATCCTCTCTCTAGGGATATT+CGG + chr2.1:8118289-8118308 MS.gene028666:CDS 40.0%
! GATAGTGTTGCTAACGGAAT+TGG + chr2.1:8118219-8118238 MS.gene028666:CDS 40.0%
! TAGTGTTGCTAACGGAATTG+GGG + chr2.1:8118221-8118240 MS.gene028666:CDS 40.0%
! TTTGGTTCCTTTAGATGGCA+TGG + chr2.1:8121527-8121546 MS.gene028666:CDS 40.0%
! TTTTGGTCGTATAGCATAGC+TGG + chr2.1:8120909-8120928 MS.gene028666:intron 40.0%
!! AAAAGAGTACCCTGGAAATG+AGG + chr2.1:8121641-8121660 MS.gene028666:CDS 40.0%
!! AGATTTTGACATGGGCTACA+TGG - chr2.1:8119388-8119407 None:intergenic 40.0%
!! AGTTTTCCGCTTTGTTGATG+TGG + chr2.1:8121335-8121354 MS.gene028666:CDS 40.0%
!! CTAGTTTTTCAGTCAAGTGC+TGG - chr2.1:8121590-8121609 None:intergenic 40.0%
!! GAAATCATTTTGGCCCTGAT+TGG + chr2.1:8118549-8118568 MS.gene028666:intron 40.0%
!! GGTGATTTGGTTCCTTTAGA+TGG + chr2.1:8121522-8121541 MS.gene028666:CDS 40.0%
!! GTTTTCCGCTTTGTTGATGT+GGG + chr2.1:8121336-8121355 MS.gene028666:CDS 40.0%
!! TCTACAAGAACATCGACTTC+GGG + chr2.1:8121424-8121443 MS.gene028666:CDS 40.0%
!! TTCAGACGTTATGGTTTGCT+TGG + chr2.1:8119734-8119753 MS.gene028666:intron 40.0%
!! TTTTCCGCTTTGTTGATGTG+GGG + chr2.1:8121337-8121356 MS.gene028666:CDS 40.0%
AAGTGAATCCATCAGACCCT+TGG + chr2.1:8118944-8118963 MS.gene028666:intron 45.0%
AATTACCACCAAGGGTCTGA+TGG - chr2.1:8118955-8118974 None:intergenic 45.0%
ACCCTGGAAATGAGGAAGAA+AGG + chr2.1:8121649-8121668 MS.gene028666:CDS 45.0%
ACGTTCCTGAAGCTTATGAC+AGG + chr2.1:8121501-8121520 MS.gene028666:CDS 45.0%
ACTCTTGCAAAAATGGAGCG+CGG + chr2.1:8121276-8121295 MS.gene028666:CDS 45.0%
AGAACCAGATGAAGCAGTAC+AGG + chr2.1:8121157-8121176 MS.gene028666:CDS 45.0%
AGAGCAGCTATTGGGAAGTT+TGG + chr2.1:8121675-8121694 MS.gene028666:CDS 45.0%
AGCACACACCCATATCTCAT+GGG - chr2.1:8121928-8121947 None:intergenic 45.0%
ATATCTGATCGGACATGCAC+GGG + chr2.1:8118252-8118271 MS.gene028666:CDS 45.0%
CAAATGTCACCTCCACAAAC+TGG - chr2.1:8121383-8121402 None:intergenic 45.0%
CAAGCTGCACCTAAAGGAAA+AGG + chr2.1:8121989-8122008 MS.gene028666:CDS 45.0%
CAGTTTGTGGAGGTGACATT+TGG + chr2.1:8121381-8121400 MS.gene028666:CDS 45.0%
CTGATCAAACAGTGACCAGA+TGG + chr2.1:8121946-8121965 MS.gene028666:CDS 45.0%
GAAAGGATGAGAGCAGCTAT+TGG + chr2.1:8121666-8121685 MS.gene028666:CDS 45.0%
GAACACCTAGTCAAGCAGTT+GGG + chr2.1:8119342-8119361 MS.gene028666:intron 45.0%
GAATATCCCTAGAGAGAGGA+TGG - chr2.1:8118290-8118309 None:intergenic 45.0%
GACGAACCTACAAATCACCT+TGG + chr2.1:8120254-8120273 MS.gene028666:CDS 45.0%
GATATCTGATCGGACATGCA+CGG + chr2.1:8118251-8118270 MS.gene028666:CDS 45.0%
GCATTGAATGAATGGGATGG+TGG + chr2.1:8121858-8121877 MS.gene028666:CDS 45.0%
GGATTTCAAGCTGCACCTAA+AGG + chr2.1:8121983-8122002 MS.gene028666:CDS 45.0%
GGTGAAATTGTGCAATGCGA+AGG - chr2.1:8121569-8121588 None:intergenic 45.0%
GTGCAATGCGAAGGTGATTA+TGG - chr2.1:8121560-8121579 None:intergenic 45.0%
GTTTCCCCACATCAACAAAG+CGG - chr2.1:8121344-8121363 None:intergenic 45.0%
TGAACACCTAGTCAAGCAGT+TGG + chr2.1:8119341-8119360 MS.gene028666:intron 45.0%
TGGTTTCAACAAGCAGATGC+AGG + chr2.1:8120142-8120161 MS.gene028666:CDS 45.0%
TGTCAGAGGCTTCAATTTCC+CGG - chr2.1:8119850-8119869 None:intergenic 45.0%
TTGTTCCCATCCTCTCTCTA+GGG + chr2.1:8118281-8118300 MS.gene028666:CDS 45.0%
TTTAGACTCCAGGATTGCTC+TGG + chr2.1:8121452-8121471 MS.gene028666:CDS 45.0%
TTTATGTTCCAGGAGGATGG+TGG + chr2.1:8120029-8120048 MS.gene028666:intron 45.0%
TTTGTTCCCATCCTCTCTCT+AGG + chr2.1:8118280-8118299 MS.gene028666:CDS 45.0%
! CAGATTTGGAAGCATGTGTG+TGG + chr2.1:8120968-8120987 MS.gene028666:intron 45.0%
! GGGATACCAAGGTGATTTGT+AGG - chr2.1:8120263-8120282 None:intergenic 45.0%
! TACATTGCACGATTTGGCCA+TGG + chr2.1:8121213-8121232 MS.gene028666:CDS 45.0%
! TCCTCTCTCTAGGGATATTC+GGG + chr2.1:8118290-8118309 MS.gene028666:CDS 45.0%
! TGAACGAGTTTTTGAACGGC+TGG + chr2.1:8120064-8120083 MS.gene028666:CDS 45.0%
! TTTCTGGTGGATGGAGAATG+AGG + chr2.1:8120183-8120202 MS.gene028666:CDS 45.0%
! TTTTGAACGGCTGGAAGCTA+TGG + chr2.1:8120073-8120092 MS.gene028666:CDS 45.0%
!! AGCCGAGGCATTGAATGAAT+GGG + chr2.1:8121851-8121870 MS.gene028666:CDS 45.0%
!! AGTTACTCTTTTCGGGGAAG+AGG - chr2.1:8120284-8120303 None:intergenic 45.0%
!! CACGTGATTTTTCTGGTGGA+TGG + chr2.1:8120174-8120193 MS.gene028666:CDS 45.0%
!! CTACAAGAACATCGACTTCG+GGG + chr2.1:8121425-8121444 MS.gene028666:CDS 45.0%
!! GAGGCATTGAATGAATGGGA+TGG + chr2.1:8121855-8121874 MS.gene028666:CDS 45.0%
!! GTTACTCTTTTCGGGGAAGA+GGG - chr2.1:8120283-8120302 None:intergenic 45.0%
!! TAGCCGAGGCATTGAATGAA+TGG + chr2.1:8121850-8121869 MS.gene028666:CDS 45.0%
!! TTCTAGTTTGTTCGTTGGGC+AGG + chr2.1:8120484-8120503 MS.gene028666:intron 45.0%
!!! CTGAGCAGCTTTTTTCTTGC+TGG - chr2.1:8118118-8118137 None:intergenic 45.0%
!!! GAGCTAGTTTTGCTGATCCA+TGG - chr2.1:8121233-8121252 None:intergenic 45.0%
ACAAACTGGAGAACAGGTGG+GGG - chr2.1:8121369-8121388 None:intergenic 50.0%
ACCAGATGAAGCAGTACAGG+TGG + chr2.1:8121160-8121179 MS.gene028666:CDS 50.0%
ACCCGAATATCCCTAGAGAG+AGG - chr2.1:8118294-8118313 None:intergenic 50.0%
ACCTCCACAAACTGGAGAAC+AGG - chr2.1:8121375-8121394 None:intergenic 50.0%
ACCTGTTCTCCAGTTTGTGG+AGG + chr2.1:8121371-8121390 MS.gene028666:CDS 50.0%
AGGCTTCAATTTCCCGGCTA+AGG - chr2.1:8119844-8119863 None:intergenic 50.0%
ATCAGGTGGCCCATGAGATA+TGG + chr2.1:8121916-8121935 MS.gene028666:CDS 50.0%
ATTGCTCTGGTTGGACCCAA+TGG + chr2.1:8121465-8121484 MS.gene028666:CDS 50.0%
CAAACAGTGACCAGATGGGA+AGG + chr2.1:8121951-8121970 MS.gene028666:CDS 50.0%
CACAAACTGGAGAACAGGTG+GGG - chr2.1:8121370-8121389 None:intergenic 50.0%
CAGCAAGTGAGGCTGTCTAT+AGG - chr2.1:8121781-8121800 None:intergenic 50.0%
CAGCACACACCCATATCTCA+TGG - chr2.1:8121929-8121948 None:intergenic 50.0%
CCACAAACTGGAGAACAGGT+GGG - chr2.1:8121371-8121390 None:intergenic 50.0%
CCAGATGAAGCAGTACAGGT+GGG + chr2.1:8121161-8121180 MS.gene028666:CDS 50.0%
CGACGAACCATGCCATCTAA+AGG - chr2.1:8121537-8121556 None:intergenic 50.0%
CTGCACCTAAAGGAAAAGGC+GGG + chr2.1:8121993-8122012 MS.gene028666:CDS 50.0%
GCTGCACCTAAAGGAAAAGG+CGG + chr2.1:8121992-8122011 MS.gene028666:CDS 50.0%
GCTTCCTATTCCAGACCACA+TGG + chr2.1:8119808-8119827 MS.gene028666:CDS 50.0%
GGAGCAGATTGCCTCAATGA+AGG + chr2.1:8121188-8121207 MS.gene028666:CDS 50.0%
GGCTGTCATTAGTTGTGACG+AGG + chr2.1:8119883-8119902 MS.gene028666:CDS 50.0%
TCAGGTGGCCCATGAGATAT+GGG + chr2.1:8121917-8121936 MS.gene028666:CDS 50.0%
TCCACAAACTGGAGAACAGG+TGG - chr2.1:8121372-8121391 None:intergenic 50.0%
TGAATCCATCAGACCCTTGG+TGG + chr2.1:8118947-8118966 MS.gene028666:intron 50.0%
TGGATTGTCGGGTAAAGCAC+AGG + chr2.1:8121695-8121714 MS.gene028666:CDS 50.0%
TGTTCAGACACGTGCTGAAC+TGG + chr2.1:8121131-8121150 MS.gene028666:CDS 50.0%
TTGCTTGGATTGAACGGCTG+TGG + chr2.1:8119749-8119768 MS.gene028666:CDS 50.0%
! AGCTGAAATTCTGGGAGCAC+AGG + chr2.1:8119928-8119947 MS.gene028666:CDS 50.0%
! CGCTTCATCGAAAAAGGCGT+CGG + chr2.1:8118185-8118204 MS.gene028666:CDS 50.0%
! GAATGAATGGGATGGTGGCA+TGG + chr2.1:8121863-8121882 MS.gene028666:CDS 50.0%
! GCGGTGGATAGTGTTGCTAA+CGG + chr2.1:8118213-8118232 MS.gene028666:CDS 50.0%
! GGTCTGGAATAGGAAGCTCA+CGG - chr2.1:8119805-8119824 None:intergenic 50.0%
! TTTGGAAGCATGTGTGTGGC+TGG + chr2.1:8120972-8120991 MS.gene028666:CDS 50.0%
!! ATCGAAAAAGGCGTCGGAGA+AGG + chr2.1:8118191-8118210 MS.gene028666:CDS 50.0%
!! GACAATTGACTCGTTAGCCG+AGG + chr2.1:8121836-8121855 MS.gene028666:CDS 50.0%
!!! CGACGCCTTTTTCGATGAAG+CGG - chr2.1:8118187-8118206 None:intergenic 50.0%
!!! CTTTTTCGATGAAGCGGTGG+CGG - chr2.1:8118181-8118200 None:intergenic 50.0%
ACCAGCCCAACTGCTTGACT+AGG - chr2.1:8119350-8119369 None:intergenic 55.0%
ACCTAGTCAAGCAGTTGGGC+TGG + chr2.1:8119346-8119365 MS.gene028666:intron 55.0%
AGCCTCTGACATGTCTGCGT+TGG + chr2.1:8119859-8119878 MS.gene028666:CDS 55.0%
CCCACCTGTACTGCTTCATC+TGG - chr2.1:8121164-8121183 None:intergenic 55.0%
CCCACCTGTTCTCCAGTTTG+TGG + chr2.1:8121368-8121387 MS.gene028666:CDS 55.0%
CGCCACCGCTTCATCGAAAA+AGG + chr2.1:8118179-8118198 MS.gene028666:CDS 55.0%
CTCCAACGCAGACATGTCAG+AGG - chr2.1:8119864-8119883 None:intergenic 55.0%
CTCTGACATGTCTGCGTTGG+AGG + chr2.1:8119862-8119881 MS.gene028666:CDS 55.0%
CTTCCCTCCTCTCTTTGCAG+CGG - chr2.1:8118154-8118173 None:intergenic 55.0%
CTTGCAAAAATGGAGCGCGG+TGG + chr2.1:8121279-8121298 MS.gene028666:CDS 55.0%
GACTCCAGGATTGCTCTGGT+TGG + chr2.1:8121456-8121475 MS.gene028666:CDS 55.0%
GGAGTCGCGTGATCTTTGCA+TGG + chr2.1:8121751-8121770 MS.gene028666:CDS 55.0%
GTGCTCTTCCCAGCTCCATT+GGG - chr2.1:8121483-8121502 None:intergenic 55.0%
TGGTTGGACCCAATGGAGCT+GGG + chr2.1:8121472-8121491 MS.gene028666:CDS 55.0%
TTCGGGGAAGAGGGATACCA+AGG - chr2.1:8120274-8120293 None:intergenic 55.0%
! ATGGGATGGTGGCATGGTTC+TGG + chr2.1:8121869-8121888 MS.gene028666:CDS 55.0%
! ATGTTCCAGGAGGATGGTGG+TGG + chr2.1:8120032-8120051 MS.gene028666:intron 55.0%
! CGGTGGACTTACAGAGAAGG+TGG + chr2.1:8121296-8121315 MS.gene028666:CDS 55.0%
! TCGGGGTCGATTTAGACTCC+AGG + chr2.1:8121442-8121461 MS.gene028666:CDS 55.0%
!! AGCAGTTGGGCTGGTAGCAA+TGG + chr2.1:8119355-8119374 MS.gene028666:intron 55.0%
!! GAAAAAGGCGTCGGAGAAGG+CGG + chr2.1:8118194-8118213 MS.gene028666:CDS 55.0%
!!! CGCCTTTTTCGATGAAGCGG+TGG - chr2.1:8118184-8118203 None:intergenic 55.0%
CGCTGCAAAGAGAGGAGGGA+AGG + chr2.1:8118152-8118171 MS.gene028666:CDS 60.0%
CGTGCTCTTCCCAGCTCCAT+TGG - chr2.1:8121484-8121503 None:intergenic 60.0%
CTGGTTGGACCCAATGGAGC+TGG + chr2.1:8121471-8121490 MS.gene028666:CDS 60.0%
CTTCACCACCACCATCCTCC+TGG - chr2.1:8120040-8120059 None:intergenic 60.0%
GAAGCAGTACAGGTGGGAGC+AGG + chr2.1:8121167-8121186 MS.gene028666:CDS 60.0%
GGCTGTGCTGTGCTGTGCTT+TGG + chr2.1:8120616-8120635 MS.gene028666:intron 60.0%
GGGTCCAACCAGAGCAATCC+TGG - chr2.1:8121463-8121482 None:intergenic 60.0%
! GCGCGGTGGACTTACAGAGA+AGG + chr2.1:8121293-8121312 MS.gene028666:CDS 60.0%
! GGAAGCATGTGTGTGGCTGG+AGG + chr2.1:8120975-8120994 MS.gene028666:CDS 60.0%
CCCTCCTCTCTTTGCAGCGG+CGG - chr2.1:8118151-8118170 None:intergenic 65.0%
CCGCCGCTGCAAAGAGAGGA+GGG + chr2.1:8118148-8118167 MS.gene028666:CDS 65.0%
!! AAAGGCGTCGGAGAAGGCGG+TGG + chr2.1:8118197-8118216 MS.gene028666:CDS 65.0%
GCCGCCGCTGCAAAGAGAGG+AGG + chr2.1:8118147-8118166 MS.gene028666:CDS 70.0%
GCTGCCGCCGCTGCAAAGAG+AGG + chr2.1:8118144-8118163 MS.gene028666:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 8118102 8122028 8118102 ID=MS.gene028666
chr2.1 mRNA 8118102 8122028 8118102 ID=MS.gene028666.t1;Parent=MS.gene028666
chr2.1 exon 8118102 8118311 8118102 ID=MS.gene028666.t1.exon1;Parent=MS.gene028666.t1
chr2.1 CDS 8118102 8118311 8118102 ID=cds.MS.gene028666.t1;Parent=MS.gene028666.t1
chr2.1 exon 8119557 8119630 8119557 ID=MS.gene028666.t1.exon2;Parent=MS.gene028666.t1
chr2.1 CDS 8119557 8119630 8119557 ID=cds.MS.gene028666.t1;Parent=MS.gene028666.t1
chr2.1 exon 8119739 8119949 8119739 ID=MS.gene028666.t1.exon3;Parent=MS.gene028666.t1
chr2.1 CDS 8119739 8119949 8119739 ID=cds.MS.gene028666.t1;Parent=MS.gene028666.t1
chr2.1 exon 8120041 8120275 8120041 ID=MS.gene028666.t1.exon4;Parent=MS.gene028666.t1
chr2.1 CDS 8120041 8120275 8120041 ID=cds.MS.gene028666.t1;Parent=MS.gene028666.t1
chr2.1 exon 8120971 8122028 8120971 ID=MS.gene028666.t1.exon5;Parent=MS.gene028666.t1
chr2.1 CDS 8120971 8122028 8120971 ID=cds.MS.gene028666.t1;Parent=MS.gene028666.t1
Gene Sequence

>MS.gene028666

ATGGTTTCTGAAGCCAGCAAGAAAAAAGCTGCTCAGAAGAAGGCTGCCGCCGCTGCAAAGAGAGGAGGGAAGGTTGCCGCCACCGCTTCATCGAAAAAGGCGTCGGAGAAGGCGGTGGATAGTGTTGCTAACGGAATTGGGGATATTCAGATATCTGATCGGACATGCACGGGAGTTCTTTGTTCCCATCCTCTCTCTAGGGATATTCGGGTTAGTAATTCATCATCGTGTTATTGATTAGTTTAATTTTGGTTGATTTAGATTTAATTAATTGTTATTCGGTGTTTTTGTTTTGTTGATTTGTTCTTTATGTTATGTATGGATGATTAGTTCTTTTGTAGGGTTAAATGAAAGTGATTAATTAGTATAACTTTTGATATTGAACAGTAAAACAATGAACAGAGTTGATTTGGAAGAAAGAAAGATAGAAACTGATTTCCGAAGAGTGAAATCATTTTGGCCCTGATTGGATAAATGTAACGCCCCGTTTTTCAGCACCAAAAATTGTGTTAGTTTTTTTTTTTTTTAAACGAAAGAATAAATAAAACCTTTATAAACTCAAGTCATAGACTTTTATTAACAAAATTACGGGTCTTACAATAAACATCTTAATTTCCAGATTATAGCATAAACACTTATAAAAAGCTGTTTTTATATCACATCACGATAAAGAAAGTCAAATTGTTTTCTTTTTGCCATTCCAAAAAAAAAAAAGCTTCTCTTTTAAGGTATTGACTGTTTTCATAATCTATTCTGGAGAGCTTATGAATATGTCATAAGCTGTTTTCATAAGTACTTACCGAACGGGTTTATAAGTGCTTATTTAGTAGATAAACTCAAGTAAGTGAATCCATCAGACCCTTGGTGGTAATTTTTCAAACCTAGTTCTGATTATTATGACTGAAATTAGACCATGAAAAATAATTTGAAGTGTTTAGATCAAAATCAATTTTTGTATTAGGTTCAGCTAATGAGTTTAGTTTGAGTATTTTTCCTTGTGTCCTTCAAATTTCAACATAATTCTTGTCTTGGTTTTTCAATTGAAAATGATCTGGCTTACTTTTGTATTGAACATATATTGCATTGTATCTCTGGAAAAAAAGAGAGAACTGGATATTATACCCAGATTCTCAATTAATTATTAATCCCATATTTTCGGACACTGGCATAGACATTCTCACTTTAGATAGTAGTCTTACTTCTAAATTATTGTAGCTAGCGTGGGTGCGTGCATGTATTTGAACACCTAGTCAAGCAGTTGGGCTGGTAGCAATGGCTTTCTACCATGTAGCCCATGTCAAAATCTCTGTTTATGAATCCTTCAGAGGTAGGTAATATTTCAATATTGAACAATAAAAAGGATATTTCTACCATATAAATACATTTAATTGTCAATGCATTTAAAATGATCAATGTTGTATTCTATTGACATTTTGGTTTATGCTGCGATGACAGATAGAATCTTTATCAGTTACTTTCCATGGACATGATCTAATAGTTGATTCTGAGTTGGAGCTAAATTATGGAAGGTTTGTCAATTGTCATCCATATTTATATCTTCTGACTTATGAATAGGATGTTATCATTTCTTACTGTAATATTTGTTGGTGATTGTGTTTTCTTTAACTTATTTTCAGACGTTATGGTTTGCTTGGATTGAACGGCTGTGGAAAATCTACGCTACTTACAGCAATAGGTTGCCGTGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCGTTGGAGGCTGTCATTAGTTGTGACGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAATTCTGGGAGCACAGGTATGTTTTAAGTACTTTGACATCTTAACTTTTACGCCCAAGTTGTTTTGCTTTTACGGATTAGTCCACACTTTATTTATTTATGTTCCAGGAGGATGGTGGTGGTGAAGCACTTGAACGAGTTTTTGAACGGCTGGAAGCTATGGATGCATCAACTGCCGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGATGGAGAATGAGGATTGCTTTAGCACGAGCCCTGTTTATGAACCCAACCATTCTTCTACTTGACGAACCTACAAATCACCTTGGTATCCCTCTTCCCCGAAAAGAGTAACTCTTTCATTTGTGACTAAATGATCATTTTTACCTTGTCATGTTTTATGCATTGATTTGCATGCGATGATTCTCTTTGCGAGCAGACTCGTGTTTTTTAATTGAAGGTCACATGGGTTCTTTATATGTTGTTTCAATTATGCCTATCAAGTATAAGACATGGATAGTATTGAACCCTTCTAGTTCTAGTTTGTTCGTTGGGCAGGCCTCTATGTTGCTTTGAGTTAAGTTTTCTTGGTGTATGCTTTGATAAAACATTTGGCAGGATTTCATCAAGTTCTGAGAATATATCTTTTGATGCTTTGTATCATCATGGGCTGTGCTGTGCTGTGCTTTGGATGCTGCTTCCATTCACTTGCATCTTCTATTTCTTTGATCGTTATTTGTATTGTGTCTCTGCTTTCTACATTAACATCTAATTTTATGGAGGTCACATTTTTCTCAAGACTTCTTACTCTGATATAGTCTTGGGTAGTTATCGGTGTCACCTTTTAGTTATGATGATGCTTTCAGACTAAATTCAATGTATTGGCTTTCTCTGTTTCCCTTCATATCTTGCAATGTTTTTTGTTATTTATTTTCATAGCATCTGTCCTTATAGTCTAATCTTTTGGTCGTATAGCATAGCTGGGTTCATATATATTTTTTTTTTTATAATAAATATTTGCAGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAATTTGACCGTATTTTGGTTGTGATTTCACACTCCCAAGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAGGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCACGATTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAGACTCTTGCAAAAATGGAGCGCGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTGATGTGGGGAAACTTCCCCCACCTGTTCTCCAGTTTGTGGAGGTGACATTTGGCTACACTCCTGATAATCTCATCTACAAGAACATCGACTTCGGGGTCGATTTAGACTCCAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGCACGTTCCTGAAGCTTATGACAGGTGATTTGGTTCCTTTAGATGGCATGGTTCGTCGCCATAATCACCTTCGCATTGCACAATTTCACCAGCACTTGACTGAAAAACTAGACTTGGAACTGTCTGCTCTCCAGTTTATGATAAAAGAGTACCCTGGAAATGAGGAAGAAAGGATGAGAGCAGCTATTGGGAAGTTTGGATTGTCGGGTAAAGCACAGGTGATGCCTATGAGAAATTTATCGGATGGACAAAGGAGTCGCGTGATCTTTGCATGGTTAGCCTATAGACAGCCTCACTTGCTGCTATTAGATGAACCAACTAATCATTTAGATATCGAGACAATTGACTCGTTAGCCGAGGCATTGAATGAATGGGATGGTGGCATGGTTCTGGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAACAGTGACCAGATGGGAAGGTGATATTATGGATTTCAAGCTGCACCTAAAGGAAAAGGCGGGTTTATCTGACTGA
Protein sequence

>MS.gene028666.t1

MVSEASKKKAAQKKAAAAAKRGGKVAATASSKKASEKAVDSVANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLKLEKEAEILGAQEDGGGEALERVFERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKLHLKEKAGLSD