Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050086.t1 | XP_013455966.1 | 99.8 | 555 | 1 | 0 | 36 | 590 | 36 | 590 | 0.00E+00 | 1110.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050086.t1 | Q9FJH6 | 85.6 | 550 | 79 | 0 | 41 | 590 | 46 | 595 | 9.7e-282 | 970.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050086.t1 | A0A072UJY1 | 99.8 | 555 | 1 | 0 | 36 | 590 | 36 | 590 | 0.0e+00 | 1110.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene050086 | 0.815405 | 9.40E-52 | -1.69E-46 |
| MS.gene050085 | MS.gene050086 | 0.82983 | 4.13E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70530 | MS.gene050086 | PPI |
| MS.gene049356 | MS.gene050086 | PPI |
| MS.gene050681 | MS.gene050086 | PPI |
| MS.gene31035 | MS.gene050086 | PPI |
| MS.gene30914 | MS.gene050086 | PPI |
| MS.gene013379 | MS.gene050086 | PPI |
| MS.gene025871 | MS.gene050086 | PPI |
| MS.gene024403 | MS.gene050086 | PPI |
| MS.gene25771 | MS.gene050086 | PPI |
| MS.gene029857 | MS.gene050086 | PPI |
| MS.gene44209 | MS.gene050086 | PPI |
| MS.gene28880 | MS.gene050086 | PPI |
| MS.gene22732 | MS.gene050086 | PPI |
| MS.gene050086 | MS.gene012143 | PPI |
| MS.gene92023 | MS.gene050086 | PPI |
| MS.gene073773 | MS.gene050086 | PPI |
| MS.gene69745 | MS.gene050086 | PPI |
| MS.gene017600 | MS.gene050086 | PPI |
| MS.gene050086 | MS.gene24579 | PPI |
| MS.gene44789 | MS.gene050086 | PPI |
| MS.gene06475 | MS.gene050086 | PPI |
| MS.gene044268 | MS.gene050086 | PPI |
| MS.gene022057 | MS.gene050086 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050086.t1 | MTR_4g057795 | 99.831 | 590 | 1 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1221 |
| MS.gene050086.t1 | MTR_2g095440 | 89.322 | 590 | 63 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1082 |
| MS.gene050086.t1 | MTR_2g095440 | 90.286 | 525 | 51 | 0 | 66 | 590 | 12 | 536 | 0.0 | 1007 |
| MS.gene050086.t1 | MTR_2g095440 | 89.943 | 527 | 53 | 0 | 64 | 590 | 4 | 530 | 0.0 | 1006 |
| MS.gene050086.t1 | MTR_4g057795 | 99.792 | 480 | 1 | 0 | 111 | 590 | 1 | 480 | 0.0 | 1000 |
| MS.gene050086.t1 | MTR_3g080970 | 43.382 | 544 | 283 | 6 | 62 | 584 | 173 | 712 | 9.76e-156 | 464 |
| MS.gene050086.t1 | MTR_7g018380 | 40.179 | 560 | 290 | 6 | 62 | 582 | 152 | 705 | 8.47e-144 | 433 |
| MS.gene050086.t1 | MTR_8g075040 | 41.547 | 556 | 286 | 8 | 62 | 582 | 205 | 756 | 8.58e-143 | 432 |
| MS.gene050086.t1 | MTR_1g066620 | 41.667 | 552 | 285 | 9 | 66 | 582 | 2 | 551 | 2.78e-141 | 421 |
| MS.gene050086.t1 | MTR_3g095010 | 29.202 | 589 | 386 | 9 | 11 | 574 | 50 | 632 | 5.39e-70 | 239 |
| MS.gene050086.t1 | MTR_3g095010 | 26.316 | 247 | 149 | 4 | 64 | 306 | 433 | 650 | 1.90e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050086.t1 | AT5G60790 | 84.588 | 558 | 86 | 0 | 33 | 590 | 38 | 595 | 0.0 | 1009 |
| MS.gene050086.t1 | AT1G64550 | 44.404 | 545 | 277 | 6 | 62 | 584 | 173 | 713 | 3.92e-158 | 470 |
| MS.gene050086.t1 | AT3G54540 | 42.602 | 561 | 276 | 9 | 62 | 583 | 161 | 714 | 3.61e-152 | 455 |
| MS.gene050086.t1 | AT3G54540 | 42.602 | 561 | 276 | 9 | 62 | 583 | 161 | 714 | 3.61e-152 | 455 |
| MS.gene050086.t1 | AT5G64840 | 31.079 | 547 | 354 | 8 | 60 | 586 | 94 | 637 | 6.11e-75 | 252 |
| MS.gene050086.t1 | AT5G09930 | 31.047 | 554 | 353 | 8 | 46 | 578 | 69 | 614 | 1.49e-73 | 248 |
| MS.gene050086.t1 | AT5G09930 | 25.726 | 241 | 134 | 7 | 64 | 294 | 411 | 616 | 1.79e-15 | 80.5 |
| MS.gene050086.t1 | AT3G28860 | 28.856 | 201 | 128 | 6 | 81 | 276 | 1030 | 1220 | 1.97e-11 | 67.8 |
| MS.gene050086.t1 | AT1G28010 | 30.342 | 234 | 123 | 8 | 375 | 581 | 1006 | 1226 | 8.35e-11 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGTACATAATAAAATT+TGG | - | 33213:10854-10873 | None:intergenic | 10.0% |
| !! | ATTACTTTGAATAATTTAGT+GGG | + | 33213:11929-11948 | MS.gene050086:intron | 15.0% |
| !! | CAGATTTATATGTATAAATT+TGG | + | 33213:10125-10144 | MS.gene050086:intron | 15.0% |
| !! | TTTGTAACAGATTATAAAAA+AGG | - | 33213:11875-11894 | None:intergenic | 15.0% |
| !!! | GTATGTGATTTTTTTTTTTT+TGG | + | 33213:10402-10421 | MS.gene050086:intron | 15.0% |
| !!! | TTTTTATAATCTGTTACAAA+CGG | + | 33213:11875-11894 | MS.gene050086:intron | 15.0% |
| !!! | TTTTTTAATGATTTGAGTTA+TGG | + | 33213:11787-11806 | MS.gene050086:intron | 15.0% |
| !! | AATTAAGAAAATTTCTACCT+TGG | + | 33213:10335-10354 | MS.gene050086:intron | 20.0% |
| !! | ATAAACAAAGAAAAAAGACT+AGG | - | 33213:11624-11643 | None:intergenic | 20.0% |
| !! | CACTAAATTATTCAAAGTAA+TGG | - | 33213:11930-11949 | None:intergenic | 20.0% |
| !! | CATTACTTTGAATAATTTAG+TGG | + | 33213:11928-11947 | MS.gene050086:intron | 20.0% |
| !! | TAAAAAAACAGAGTAAGAAA+TGG | - | 33213:11680-11699 | None:intergenic | 20.0% |
| !! | TATAATTTCGTCATCATTAA+AGG | - | 33213:10226-10245 | None:intergenic | 20.0% |
| !! | TTGCTAACTTTGAATAAATT+TGG | + | 33213:11196-11215 | MS.gene050086:intron | 20.0% |
| !!! | AAGGTAGAAATTTTCTTAAT+TGG | - | 33213:10336-10355 | None:intergenic | 20.0% |
| !!! | AAGTTGATATATGATTGAAT+CGG | + | 33213:10197-10216 | MS.gene050086:intron | 20.0% |
| !!! | ACTATCATTTTATTTAATGC+GGG | + | 33213:12212-12231 | MS.gene050086:intron | 20.0% |
| !!! | ATCTTAATCATTTTGATTGA+TGG | + | 33213:10163-10182 | MS.gene050086:intron | 20.0% |
| !!! | ATTTTGTTCAAAAGGATTTA+GGG | - | 33213:11901-11920 | None:intergenic | 20.0% |
| !!! | CACTATCATTTTATTTAATG+CGG | + | 33213:12211-12230 | MS.gene050086:intron | 20.0% |
| !!! | TAGTTAGTTGATAAATGTAT+AGG | - | 33213:12389-12408 | None:intergenic | 20.0% |
| !!! | TATTTTGTTCAAAAGGATTT+AGG | - | 33213:11902-11921 | None:intergenic | 20.0% |
| !!! | TTGTTTAAATCTGAAGTTAA+TGG | + | 33213:9975-9994 | MS.gene050086:intron | 20.0% |
| ! | AATCAGTGATATGAAGATTT+CGG | + | 33213:9797-9816 | MS.gene050086:CDS | 25.0% |
| ! | AATTGGAGTTAAATTATGGA+AGG | + | 33213:10783-10802 | MS.gene050086:CDS | 25.0% |
| ! | AGTTAATGGTGATTATGTAT+TGG | + | 33213:9989-10008 | MS.gene050086:intron | 25.0% |
| ! | ATAAATTTCAGACAAACAAG+AGG | - | 33213:11489-11508 | None:intergenic | 25.0% |
| ! | CTATTGTTTGTTTACAGATT+TGG | + | 33213:12406-12425 | MS.gene050086:intron | 25.0% |
| ! | CTTTGAATAAATTTGGTTAC+AGG | + | 33213:11203-11222 | MS.gene050086:intron | 25.0% |
| ! | TAATAAAATTTGGCTGTACT+CGG | - | 33213:10844-10863 | None:intergenic | 25.0% |
| ! | TATGGTTTACTTGGATTAAA+TGG | + | 33213:10931-10950 | MS.gene050086:CDS | 25.0% |
| ! | TCAATATCCAAATGATTAGT+TGG | - | 33213:13268-13287 | None:intergenic | 25.0% |
| ! | TCTGAATTGGAGTTAAATTA+TGG | + | 33213:10779-10798 | MS.gene050086:CDS | 25.0% |
| ! | TGCATAATACAGACATAAAA+GGG | - | 33213:12193-12212 | None:intergenic | 25.0% |
| !! | AATTTTCTTAATTGGCCAAA+AGG | - | 33213:10328-10347 | None:intergenic | 25.0% |
| !! | AGCAAAAAACTTAAGCTTTT+GGG | - | 33213:10255-10274 | None:intergenic | 25.0% |
| !! | ATTTTCTTAATTGGCCAAAA+GGG | - | 33213:10327-10346 | None:intergenic | 25.0% |
| !! | GGCAAAATATTTTGTTCAAA+AGG | - | 33213:11909-11928 | None:intergenic | 25.0% |
| !! | TAGCAAAAAACTTAAGCTTT+TGG | - | 33213:10256-10275 | None:intergenic | 25.0% |
| !! | TAGTTTATTGTTGTTAGCAT+GGG | + | 33213:10498-10517 | MS.gene050086:intron | 25.0% |
| !! | TTAGTTTATTGTTGTTAGCA+TGG | + | 33213:10497-10516 | MS.gene050086:intron | 25.0% |
| !!! | ATGCTTTACTATGTCTTTTT+TGG | + | 33213:12113-12132 | MS.gene050086:intron | 25.0% |
| !!! | CTATCATTTTATTTAATGCG+GGG | + | 33213:12213-12232 | MS.gene050086:intron | 25.0% |
| !!! | GCTTTAACTATGTCTTTTTT+TGG | + | 33213:12068-12087 | MS.gene050086:intron | 25.0% |
| !!! | TATCATTTTATTTAATGCGG+GGG | + | 33213:12214-12233 | MS.gene050086:intron | 25.0% |
| AACGTTCATAAATACGTTCA+AGG | - | 33213:11248-11267 | None:intergenic | 30.0% | |
| AAGGAATATATTGCTCGATT+TGG | + | 33213:12659-12678 | MS.gene050086:CDS | 30.0% | |
| AAGTTACCAAGATGATTAGT+TGG | - | 33213:11447-11466 | None:intergenic | 30.0% | |
| ACGTTCATAAATACGTTCAA+GGG | - | 33213:11247-11266 | None:intergenic | 30.0% | |
| AGCAATATATTCCTTCATGT+TGG | - | 33213:12654-12673 | None:intergenic | 30.0% | |
| ATTCACTCATCATAAACTGA+AGG | - | 33213:13081-13100 | None:intergenic | 30.0% | |
| ATTGCAGATAGAGTCTTTAT+CGG | + | 33213:10724-10743 | MS.gene050086:intron | 30.0% | |
| CAAAACTTACTTCAGAAAAC+TGG | - | 33213:12835-12854 | None:intergenic | 30.0% | |
| CTATGAAGAATTTGTCTGAT+GGG | + | 33213:13176-13195 | MS.gene050086:CDS | 30.0% | |
| GCATAATACAGACATAAAAG+GGG | - | 33213:12192-12211 | None:intergenic | 30.0% | |
| GGAAAAAACACTAGCAAAAA+TGG | + | 33213:12721-12740 | MS.gene050086:CDS | 30.0% | |
| GTGCATAATACAGACATAAA+AGG | - | 33213:12194-12213 | None:intergenic | 30.0% | |
| TAAATTTGGTTACAGGATGA+TGG | + | 33213:11210-11229 | MS.gene050086:intron | 30.0% | |
| TAATGGTTACATTCACAACA+TGG | - | 33213:10578-10597 | None:intergenic | 30.0% | |
| TACCTCCAAAAAATTGGAAT+AGG | - | 33213:10605-10624 | None:intergenic | 30.0% | |
| TGAACGTATTTATGAACGTT+TGG | + | 33213:11248-11267 | MS.gene050086:CDS | 30.0% | |
| TGGAAATGTTTAGTATTTCG+CGG | + | 33213:10422-10441 | MS.gene050086:intron | 30.0% | |
| TTACTTGGATTAAATGGTTG+TGG | + | 33213:10937-10956 | MS.gene050086:CDS | 30.0% | |
| TTCACTCATCATAAACTGAA+GGG | - | 33213:13080-13099 | None:intergenic | 30.0% | |
| TTGATATATGATTGAATCGG+TGG | + | 33213:10200-10219 | MS.gene050086:intron | 30.0% | |
| ! | GAAGAAGTTTGAACGTATTT+TGG | + | 33213:12457-12476 | MS.gene050086:CDS | 30.0% |
| ! | TTTTTGTAGATGAGATTCTC+AGG | - | 33213:12866-12885 | None:intergenic | 30.0% |
| !! | ATCTACAAAAACATCGACTT+TGG | + | 33213:12875-12894 | MS.gene050086:CDS | 30.0% |
| !! | TCTACAAAAACATCGACTTT+GGG | + | 33213:12876-12895 | MS.gene050086:CDS | 30.0% |
| !! | TCTCATTGTTGATTCTGAAT+TGG | + | 33213:10766-10785 | MS.gene050086:CDS | 30.0% |
| !!! | AAGCTTAAGTTTTTTGCTAC+TGG | + | 33213:10257-10276 | MS.gene050086:intron | 30.0% |
| !!! | CAGTTTTCTGAAGTAAGTTT+TGG | + | 33213:12833-12852 | MS.gene050086:CDS | 30.0% |
| !!! | TATTCCAATTTTTTGGAGGT+AGG | + | 33213:10604-10623 | MS.gene050086:intron | 30.0% |
| !!! | TCTTTATCGGTTACTTTTCA+TGG | + | 33213:10737-10756 | MS.gene050086:CDS | 30.0% |
| AAATGAGGAAGAGAAGATGA+GGG | + | 33213:13108-13127 | MS.gene050086:CDS | 35.0% | |
| AAATTGGAATAGGCGAGTAA+TGG | - | 33213:10595-10614 | None:intergenic | 35.0% | |
| AAGAAGCTGAAGATTTACAC+TGG | + | 33213:12545-12564 | MS.gene050086:CDS | 35.0% | |
| ACAACCTACCTCCAAAAAAT+TGG | - | 33213:10611-10630 | None:intergenic | 35.0% | |
| CAATCATTGGTAAGAGTTTC+AGG | - | 33213:10883-10902 | None:intergenic | 35.0% | |
| CACTTGAGTTCTTTCTTCTT+AGG | - | 33213:10376-10395 | None:intergenic | 35.0% | |
| CATGCAGTAAACGACAATTA+TGG | + | 33213:10633-10652 | MS.gene050086:intron | 35.0% | |
| CCATCAGACAAATTCTTCAT+AGG | - | 33213:13178-13197 | None:intergenic | 35.0% | |
| CCTATGAAGAATTTGTCTGA+TGG | + | 33213:13175-13194 | MS.gene050086:CDS | 35.0% | |
| GATATTGAGCAATTCGAAGA+TGG | - | 33213:13018-13037 | None:intergenic | 35.0% | |
| GATGAACCAACTAATCATCT+TGG | + | 33213:11438-11457 | MS.gene050086:CDS | 35.0% | |
| GATTAATGAGCCTAAAGTCA+TGG | - | 33213:13351-13370 | None:intergenic | 35.0% | |
| GTGATATGAAGATTTCGGAT+CGG | + | 33213:9802-9821 | MS.gene050086:CDS | 35.0% | |
| TACATGCAAATGATTGTGTC+TGG | - | 33213:11991-12010 | None:intergenic | 35.0% | |
| TATTTGTGCAGACACCATTA+AGG | - | 33213:12508-12527 | None:intergenic | 35.0% | |
| TCAAAGCAAATCGCAATCAT+TGG | - | 33213:10896-10915 | None:intergenic | 35.0% | |
| TCATAACCTGTGATGAAGAA+AGG | + | 33213:11076-11095 | MS.gene050086:CDS | 35.0% | |
| TCATCAAGTAGAAGAATGGT+GGG | - | 33213:11423-11442 | None:intergenic | 35.0% | |
| TGACTTTAGGCTCATTAATC+AGG | + | 33213:13351-13370 | MS.gene050086:CDS | 35.0% | |
| TGATCAGAAAGTGACCAAAT+GGG | + | 33213:13399-13418 | MS.gene050086:CDS | 35.0% | |
| TGATGAAGAAAGGTTGCAAT+TGG | + | 33213:11086-11105 | MS.gene050086:CDS | 35.0% | |
| TGATGCAATATTTCCATGAC+TGG | + | 33213:12256-12275 | MS.gene050086:intron | 35.0% | |
| TGGTTCATCAAGTAGAAGAA+TGG | - | 33213:11427-11446 | None:intergenic | 35.0% | |
| TTCATCAAGTAGAAGAATGG+TGG | - | 33213:11424-11443 | None:intergenic | 35.0% | |
| TTTATGATGAGTGAATACCC+TGG | + | 33213:13085-13104 | MS.gene050086:CDS | 35.0% | |
| ! | AAGAAGACTCGTGATTTTTC+TGG | + | 33213:11351-11370 | MS.gene050086:CDS | 35.0% |
| ! | AATATTTCCATGACTGGTTG+GGG | + | 33213:12262-12281 | MS.gene050086:intron | 35.0% |
| ! | ATCCTCTCTCTAGAGATATT+CGG | + | 33213:9850-9869 | MS.gene050086:CDS | 35.0% |
| ! | CAATATTTCCATGACTGGTT+GGG | + | 33213:12261-12280 | MS.gene050086:intron | 35.0% |
| ! | GCTTGTCATGTTTATGCTTT+TGG | + | 33213:11584-11603 | MS.gene050086:intron | 35.0% |
| ! | TATTGAGACAATTGACTCCT+TGG | + | 33213:13282-13301 | MS.gene050086:CDS | 35.0% |
| ! | TGATTTTCTTCCAGACGTTA+TGG | + | 33213:10913-10932 | MS.gene050086:intron | 35.0% |
| !! | AGCTTAATGATTTGCCCTTT+TGG | + | 33213:10310-10329 | MS.gene050086:intron | 35.0% |
| !! | CTACAAAAACATCGACTTTG+GGG | + | 33213:12877-12896 | MS.gene050086:CDS | 35.0% |
| !! | TATATTGCTCGATTTGGTCA+TGG | + | 33213:12665-12684 | MS.gene050086:CDS | 35.0% |
| !!! | ACTCGCCTATTCCAATTTTT+TGG | + | 33213:10597-10616 | MS.gene050086:intron | 35.0% |
| AAACAAGAGGAGTTCTTTCC+AGG | - | 33213:11476-11495 | None:intergenic | 40.0% | |
| AACAAGAGGAGTTCTTTCCA+GGG | - | 33213:11475-11494 | None:intergenic | 40.0% | |
| AATTCTTCATAGGCATCACC+TGG | - | 33213:13168-13187 | None:intergenic | 40.0% | |
| ACACTAGCAAAAATGGAACG+AGG | + | 33213:12728-12747 | MS.gene050086:CDS | 40.0% | |
| ACTTCAGAAAACTGGAGAAC+AGG | - | 33213:12827-12846 | None:intergenic | 40.0% | |
| AGACACCATTAAGGAAATCC+TGG | - | 33213:12499-12518 | None:intergenic | 40.0% | |
| AGAGTCGAGTAATCTTTGCA+TGG | + | 33213:13203-13222 | MS.gene050086:CDS | 40.0% | |
| ATATCCATGTGCTCAGGAAT+CGG | - | 33213:11003-11022 | None:intergenic | 40.0% | |
| ATCTTCTCTTCCTCATTTCC+AGG | - | 33213:13106-13125 | None:intergenic | 40.0% | |
| ATTCTTCATAGGCATCACCT+GGG | - | 33213:13167-13186 | None:intergenic | 40.0% | |
| CATCAAGTAGAAGAATGGTG+GGG | - | 33213:11422-11441 | None:intergenic | 40.0% | |
| CATTCCCAGGATTTCCTTAA+TGG | + | 33213:12491-12510 | MS.gene050086:CDS | 40.0% | |
| CATTCCTATTGCAGTAAGCA+GGG | - | 33213:10971-10990 | None:intergenic | 40.0% | |
| CTGATCAGAAAGTGACCAAA+TGG | + | 33213:13398-13417 | MS.gene050086:CDS | 40.0% | |
| CTTTAGGCTCATTAATCAGG+TGG | + | 33213:13354-13373 | MS.gene050086:CDS | 40.0% | |
| GAAATGAGGAAGAGAAGATG+AGG | + | 33213:13107-13126 | MS.gene050086:CDS | 40.0% | |
| GACACCATTAAGGAAATCCT+GGG | - | 33213:12498-12517 | None:intergenic | 40.0% | |
| GATCAATATGTTCAGACTCG+TGG | + | 33213:12575-12594 | MS.gene050086:CDS | 40.0% | |
| GCAATATTTCCATGACTGGT+TGG | + | 33213:12260-12279 | MS.gene050086:intron | 40.0% | |
| GCTGAAATCTTAGATGGTCT+TGG | + | 33213:11306-11325 | MS.gene050086:CDS | 40.0% | |
| GGAGAAAGAAGCTGAAACTT+TGG | + | 33213:11107-11126 | MS.gene050086:CDS | 40.0% | |
| GGATATTCATCACCTTAGCA+GGG | + | 33213:11017-11036 | MS.gene050086:CDS | 40.0% | |
| GGATGAGCCAACTAATCATT+TGG | + | 33213:13258-13277 | MS.gene050086:CDS | 40.0% | |
| TCAGCTTCTTACTTTGCATG+TGG | - | 33213:12535-12554 | None:intergenic | 40.0% | |
| TCATCCAGAAGTAGCAATTG+AGG | - | 33213:13244-13263 | None:intergenic | 40.0% | |
| TCCAAGTAAACCATAACGTC+TGG | - | 33213:10926-10945 | None:intergenic | 40.0% | |
| TCCAGACGTTATGGTTTACT+TGG | + | 33213:10922-10941 | MS.gene050086:intron | 40.0% | |
| TCTTCTCTTCCTCATTTCCA+GGG | - | 33213:13105-13124 | None:intergenic | 40.0% | |
| TGATGAATATCCATGTGCTC+AGG | - | 33213:11009-11028 | None:intergenic | 40.0% | |
| TGCTCAATATCATCAGCACT+TGG | + | 33213:13027-13046 | MS.gene050086:CDS | 40.0% | |
| TGCTTACTGCAATAGGAATG+CGG | + | 33213:10971-10990 | MS.gene050086:CDS | 40.0% | |
| TGGATATTCATCACCTTAGC+AGG | + | 33213:11016-11035 | MS.gene050086:CDS | 40.0% | |
| TTCTTCCAAAGCAGCTGATA+AGG | + | 33213:9764-9783 | MS.gene050086:CDS | 40.0% | |
| TTGCAACCTTTCTTCATCAC+AGG | - | 33213:11085-11104 | None:intergenic | 40.0% | |
| TTTGTTTCCTAGTGATGGCA+TGG | + | 33213:12979-12998 | MS.gene050086:CDS | 40.0% | |
| ! | AAGACTCGTGATTTTTCTGG+AGG | + | 33213:11354-11373 | MS.gene050086:CDS | 40.0% |
| ! | ATTTGGTTACAGGATGATGG+AGG | + | 33213:11213-11232 | MS.gene050086:intron | 40.0% |
| ! | CTGGCTTAATGTTGTTGGTT+TGG | + | 33213:10462-10481 | MS.gene050086:intron | 40.0% |
| ! | TCCTCTCTCTAGAGATATTC+GGG | + | 33213:9851-9870 | MS.gene050086:CDS | 40.0% |
| ! | TGCTTGTTAGCCATGACTTT+AGG | + | 33213:13338-13357 | MS.gene050086:CDS | 40.0% |
| !! | GGATTTCAAGAAGCATCTGA+AGG | + | 33213:13435-13454 | MS.gene050086:CDS | 40.0% |
| !! | GGTGATTTGTTTCCTAGTGA+TGG | + | 33213:12974-12993 | MS.gene050086:CDS | 40.0% |
| !! | TGCTTCTGGCTTAATGTTGT+TGG | + | 33213:10457-10476 | MS.gene050086:intron | 40.0% |
| !!! | ATTTCTACCTTGGTTTTGCG+CGG | + | 33213:10345-10364 | MS.gene050086:intron | 40.0% |
| !!! | CGCCTATTCCAATTTTTTGG+AGG | + | 33213:10600-10619 | MS.gene050086:intron | 40.0% |
| ACACTGCTGAAGCTAATGAC+AGG | + | 33213:12953-12972 | MS.gene050086:CDS | 45.0% | |
| ACCAGATGAAGCAGTACAAG+TGG | + | 33213:12612-12631 | MS.gene050086:CDS | 45.0% | |
| AGAAAACTGGAGAACAGGAG+GGG | - | 33213:12822-12841 | None:intergenic | 45.0% | |
| AGAAGATGAGGGCTGCTATT+GGG | + | 33213:13119-13138 | MS.gene050086:CDS | 45.0% | |
| AGCTTTCTTCTTGCTAGCGT+CGG | - | 33213:9688-9707 | None:intergenic | 45.0% | |
| AGGCTTCAATTTCCCTGCTA+AGG | - | 33213:11032-11051 | None:intergenic | 45.0% | |
| AGTATTCCGCTTCACTGATG+TGG | + | 33213:12787-12806 | MS.gene050086:CDS | 45.0% | |
| ATCCCACTCATTCAATGCCT+CGG | - | 33213:13308-13327 | None:intergenic | 45.0% | |
| ATTGCTCTGGTTGGACCAAA+TGG | + | 33213:12917-12936 | MS.gene050086:CDS | 45.0% | |
| ATTTCGGATCGGACTTGTAC+TGG | + | 33213:9813-9832 | MS.gene050086:CDS | 45.0% | |
| CAAATGGGAGGGTGACATTA+TGG | + | 33213:13414-13433 | MS.gene050086:CDS | 45.0% | |
| CAGAAAACTGGAGAACAGGA+GGG | - | 33213:12823-12842 | None:intergenic | 45.0% | |
| CAGAAAGTGACCAAATGGGA+GGG | + | 33213:13403-13422 | MS.gene050086:CDS | 45.0% | |
| CAGATTTGGAAGCTTGTGTG+TGG | + | 33213:12420-12439 | MS.gene050086:intron | 45.0% | |
| CATAATGTCACCCTCCCATT+TGG | - | 33213:13416-13435 | None:intergenic | 45.0% | |
| CCAGATGAAGCAGTACAAGT+GGG | + | 33213:12613-12632 | MS.gene050086:CDS | 45.0% | |
| CTAGCAAAAATGGAACGAGG+TGG | + | 33213:12731-12750 | MS.gene050086:CDS | 45.0% | |
| CTCATCATAAACTGAAGGGC+AGG | - | 33213:13076-13095 | None:intergenic | 45.0% | |
| CTTGGCTGAGAAATTGGACT+TGG | + | 33213:13045-13064 | MS.gene050086:CDS | 45.0% | |
| GAGTGAATACCCTGGAAATG+AGG | + | 33213:13093-13112 | MS.gene050086:CDS | 45.0% | |
| GCATTCCTATTGCAGTAAGC+AGG | - | 33213:10972-10991 | None:intergenic | 45.0% | |
| GCTTACTGCAATAGGAATGC+GGG | + | 33213:10972-10991 | MS.gene050086:CDS | 45.0% | |
| GGTTGTGATATCACATTCCC+AGG | + | 33213:12478-12497 | MS.gene050086:CDS | 45.0% | |
| GGTTTAGTGAGTCTTGCTTC+TGG | + | 33213:10443-10462 | MS.gene050086:intron | 45.0% | |
| GTACTCTTTCCAGCACCATT+TGG | - | 33213:12935-12954 | None:intergenic | 45.0% | |
| GTATTCCGCTTCACTGATGT+GGG | + | 33213:12788-12807 | MS.gene050086:CDS | 45.0% | |
| TCAGAAAACTGGAGAACAGG+AGG | - | 33213:12824-12843 | None:intergenic | 45.0% | |
| TCAGAAAGTGACCAAATGGG+AGG | + | 33213:13402-13421 | MS.gene050086:CDS | 45.0% | |
| TCAGCACTTGGCTGAGAAAT+TGG | + | 33213:13039-13058 | MS.gene050086:CDS | 45.0% | |
| TCTACCCTGCTTACTGCAAT+AGG | + | 33213:10964-10983 | MS.gene050086:CDS | 45.0% | |
| TTCCAATGCAGACATGTCAG+AGG | - | 33213:11052-11071 | None:intergenic | 45.0% | |
| ! | ACAGCCTCAATTGCTACTTC+TGG | + | 33213:13237-13256 | MS.gene050086:CDS | 45.0% |
| ! | ACCCGAATATCTCTAGAGAG+AGG | - | 33213:9855-9874 | None:intergenic | 45.0% |
| ! | CGTGCTGCTGAAATCTTAGA+TGG | + | 33213:11300-11319 | MS.gene050086:CDS | 45.0% |
| ! | GTTTTCCCACATCAGTGAAG+CGG | - | 33213:12796-12815 | None:intergenic | 45.0% |
| ! | TCTTGGTAACTTCTCTTCCC+TGG | + | 33213:11455-11474 | MS.gene050086:intron | 45.0% |
| ! | TTCTGCGGTTGATGCATCTA+GGG | - | 33213:11277-11296 | None:intergenic | 45.0% |
| ! | TTGGGGTTGACTTAGACTCT+AGG | + | 33213:12894-12913 | MS.gene050086:CDS | 45.0% |
| ! | TTTCTGCGGTTGATGCATCT+AGG | - | 33213:11278-11297 | None:intergenic | 45.0% |
| !! | CTCGTGATTTTTCTGGAGGA+TGG | + | 33213:11358-11377 | MS.gene050086:CDS | 45.0% |
| !! | CTTAGACTCTAGGATTGCTC+TGG | + | 33213:12904-12923 | MS.gene050086:CDS | 45.0% |
| !!! | TGGTTTTGACAAGCAGATGC+AGG | + | 33213:11326-11345 | MS.gene050086:CDS | 45.0% |
| !!! | TTTTTTCCTTGCTCTGTGCC+TGG | - | 33213:12709-12728 | None:intergenic | 45.0% |
| !!! | AGTTTATTTATTTATTTTTA+TGG | + | 33213:11172-11191 | MS.gene050086:intron | 5.0% |
| AAAACTGGAGAACAGGAGGG+GGG | - | 33213:12820-12839 | None:intergenic | 50.0% | |
| ACTTCCGATTCCTGAGCACA+TGG | + | 33213:10996-11015 | MS.gene050086:CDS | 50.0% | |
| AGCCTCTGACATGTCTGCAT+TGG | + | 33213:11047-11066 | MS.gene050086:CDS | 50.0% | |
| AGCGACCTTATCAGCTGCTT+TGG | - | 33213:9772-9791 | None:intergenic | 50.0% | |
| AGCTGAAACTTTGGCTGCTC+AGG | + | 33213:11116-11135 | MS.gene050086:CDS | 50.0% | |
| ATCAGGTGGCGCATGAGATA+TGG | + | 33213:13368-13387 | MS.gene050086:CDS | 50.0% | |
| ATGCTACGTACCCATCAGCT+CGG | - | 33213:10545-10564 | None:intergenic | 50.0% | |
| ATTGGGAGGTTTGGACTGAC+AGG | + | 33213:13136-13155 | MS.gene050086:CDS | 50.0% | |
| CCCACTTGTACTGCTTCATC+TGG | - | 33213:12616-12635 | None:intergenic | 50.0% | |
| GAAAACTGGAGAACAGGAGG+GGG | - | 33213:12821-12840 | None:intergenic | 50.0% | |
| GAAACATCCCCAACCAGTCA+TGG | - | 33213:12272-12291 | None:intergenic | 50.0% | |
| GAAGCAGTACAAGTGGGAAC+AGG | + | 33213:12619-12638 | MS.gene050086:CDS | 50.0% | |
| GAGAAGATGAGGGCTGCTAT+TGG | + | 33213:13118-13137 | MS.gene050086:CDS | 50.0% | |
| GCATTGAATGAGTGGGATGG+CGG | + | 33213:13310-13329 | MS.gene050086:CDS | 50.0% | |
| GGAGCAGATTGCCAACATGA+AGG | + | 33213:12640-12659 | MS.gene050086:CDS | 50.0% | |
| TCAGGTGGCGCATGAGATAT+GGG | + | 33213:13369-13388 | MS.gene050086:CDS | 50.0% | |
| TGTTCAGACTCGTGGTGACT+TGG | + | 33213:12583-12602 | MS.gene050086:CDS | 50.0% | |
| TTCAGCAAAACTAGCTCGCC+AGG | + | 33213:12688-12707 | MS.gene050086:CDS | 50.0% | |
| ! | AGCTGATGGGTACGTAGCAT+GGG | + | 33213:10545-10564 | MS.gene050086:intron | 50.0% |
| ! | TTCAGCAGCACGCTTTTCTG+CGG | - | 33213:11292-11311 | None:intergenic | 50.0% |
| !! | AGCTGCTTTGGAAGAAGCAG+CGG | - | 33213:9760-9779 | None:intergenic | 50.0% |
| !! | CAAGAAGCATCTGAAGGCGA+AGG | + | 33213:13441-13460 | MS.gene050086:CDS | 50.0% |
| !! | GACTCTAGGATTGCTCTGGT+TGG | + | 33213:12908-12927 | MS.gene050086:CDS | 50.0% |
| !! | GAGGCATTGAATGAGTGGGA+TGG | + | 33213:13307-13326 | MS.gene050086:CDS | 50.0% |
| !! | TGGTTACAGGATGATGGAGG+TGG | + | 33213:11216-11235 | MS.gene050086:intron | 50.0% |
| AAGCATCTGAAGGCGAAGGC+GGG | + | 33213:13445-13464 | MS.gene050086:CDS | 55.0% | |
| AGATGAGGGCTGCTATTGGG+AGG | + | 33213:13122-13141 | MS.gene050086:CDS | 55.0% | |
| AGGGCTGCTATTGGGAGGTT+TGG | + | 33213:13127-13146 | MS.gene050086:CDS | 55.0% | |
| CGCTTGACCATGCCATCACT+AGG | - | 33213:12989-13008 | None:intergenic | 55.0% | |
| CTCATTCAATGCCTCGGCCA+AGG | - | 33213:13302-13321 | None:intergenic | 55.0% | |
| CTGGTTGGACCAAATGGTGC+TGG | + | 33213:12923-12942 | MS.gene050086:CDS | 55.0% | |
| CTTACCACCACGTTTAGCGG+CGG | - | 33213:9730-9749 | None:intergenic | 55.0% | |
| GGCCTTACCACCACGTTTAG+CGG | - | 33213:9733-9752 | None:intergenic | 55.0% | |
| GGTTGAACCGCGCAAAACCA+AGG | - | 33213:10355-10374 | None:intergenic | 55.0% | |
| TGGACTGACAGGTAAAGCCC+AGG | + | 33213:13147-13166 | MS.gene050086:CDS | 55.0% | |
| TTTGGAAGAAGCAGCGGCTG+CGG | - | 33213:9754-9773 | None:intergenic | 55.0% | |
| ! | ACGAGGTGGACTCACAGAGA+AGG | + | 33213:12745-12764 | MS.gene050086:CDS | 55.0% |
| ! | GAAGCATCTGAAGGCGAAGG+CGG | + | 33213:13444-13463 | MS.gene050086:CDS | 55.0% |
| ! | GACAATTGACTCCTTGGCCG+AGG | + | 33213:13288-13307 | MS.gene050086:CDS | 55.0% |
| ! | GAGCTGATGGGTACGTAGCA+TGG | + | 33213:10544-10563 | MS.gene050086:intron | 55.0% |
| !! | GGCCGAGGCATTGAATGAGT+GGG | + | 33213:13303-13322 | MS.gene050086:CDS | 55.0% |
| !! | TGGCCGAGGCATTGAATGAG+TGG | + | 33213:13302-13321 | MS.gene050086:CDS | 55.0% |
| AGCATCTGAAGGCGAAGGCG+GGG | + | 33213:13446-13465 | MS.gene050086:CDS | 60.0% | |
| CGCCGCTAAACGTGGTGGTA+AGG | + | 33213:9728-9747 | MS.gene050086:CDS | 60.0% | |
| GAAGGCGAAGGCGGGGATAT+TGG | + | 33213:13453-13472 | MS.gene050086:CDS | 60.0% | |
| GAGCGTCTAGCCGAGCTGAT+GGG | + | 33213:10532-10551 | MS.gene050086:intron | 60.0% | |
| TGAGCGTCTAGCCGAGCTGA+TGG | + | 33213:10531-10550 | MS.gene050086:intron | 60.0% | |
| ! | GAATGAGTGGGATGGCGGCA+TGG | + | 33213:13315-13334 | MS.gene050086:CDS | 60.0% |
| ACCACCACGTTTAGCGGCGG+CGG | - | 33213:9727-9746 | None:intergenic | 65.0% | |
| AGCTCGCCAGGCACAGAGCA+AGG | + | 33213:12700-12719 | MS.gene050086:CDS | 65.0% | |
| ACCACGTTTAGCGGCGGCGG+CGG | - | 33213:9724-9743 | None:intergenic | 70.0% | |
| GCCGCCGCCGCTAAACGTGG+TGG | + | 33213:9723-9742 | MS.gene050086:CDS | 75.0% | |
| ! | GCCGCCGCCGCCGCTAAACG+TGG | + | 33213:9720-9739 | MS.gene050086:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 33213 | gene | 9678 | 13480 | 9678 | ID=MS.gene050086 |
| 33213 | mRNA | 9678 | 13480 | 9678 | ID=MS.gene050086.t1;Parent=MS.gene050086 |
| 33213 | exon | 9678 | 9872 | 9678 | ID=MS.gene050086.t1.exon1;Parent=MS.gene050086.t1 |
| 33213 | CDS | 9678 | 9872 | 9678 | ID=cds.MS.gene050086.t1;Parent=MS.gene050086.t1 |
| 33213 | exon | 10731 | 10804 | 10731 | ID=MS.gene050086.t1.exon2;Parent=MS.gene050086.t1 |
| 33213 | CDS | 10731 | 10804 | 10731 | ID=cds.MS.gene050086.t1;Parent=MS.gene050086.t1 |
| 33213 | exon | 10927 | 11137 | 10927 | ID=MS.gene050086.t1.exon3;Parent=MS.gene050086.t1 |
| 33213 | CDS | 10927 | 11137 | 10927 | ID=cds.MS.gene050086.t1;Parent=MS.gene050086.t1 |
| 33213 | exon | 11225 | 11459 | 11225 | ID=MS.gene050086.t1.exon4;Parent=MS.gene050086.t1 |
| 33213 | CDS | 11225 | 11459 | 11225 | ID=cds.MS.gene050086.t1;Parent=MS.gene050086.t1 |
| 33213 | exon | 12423 | 13480 | 12423 | ID=MS.gene050086.t1.exon5;Parent=MS.gene050086.t1 |
| 33213 | CDS | 12423 | 13480 | 12423 | ID=cds.MS.gene050086.t1;Parent=MS.gene050086.t1 |
| Gene Sequence |
| Protein sequence |
