Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70530.t1 | XP_003601462.1 | 85.7 | 816 | 14 | 2 | 1 | 816 | 1 | 713 | 0.00E+00 | 1341.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70530.t1 | Q8H0V6 | 71.6 | 817 | 128 | 3 | 1 | 816 | 1 | 714 | 0.0e+00 | 1144.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70530.t1 | G7J816 | 85.7 | 816 | 14 | 2 | 1 | 816 | 1 | 713 | 0.0e+00 | 1341.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049166 | MS.gene70530 | 0.82017 | 7.90E-53 | -1.69E-46 |
MS.gene050084 | MS.gene70530 | 0.824617 | 7.33E-54 | -1.69E-46 |
MS.gene050085 | MS.gene70530 | 0.84586 | 3.12E-59 | -1.69E-46 |
MS.gene050114 | MS.gene70530 | 0.854018 | 1.63E-61 | -1.69E-46 |
MS.gene050117 | MS.gene70530 | 0.81556 | 8.68E-52 | -1.69E-46 |
MS.gene050277 | MS.gene70530 | 0.801212 | 1.00E-48 | -1.69E-46 |
MS.gene050317 | MS.gene70530 | 0.813707 | 2.23E-51 | -1.69E-46 |
MS.gene050838 | MS.gene70530 | 0.857539 | 1.52E-62 | -1.69E-46 |
MS.gene051003 | MS.gene70530 | 0.822752 | 2.00E-53 | -1.69E-46 |
MS.gene051233 | MS.gene70530 | 0.817442 | 3.29E-52 | -1.69E-46 |
MS.gene051234 | MS.gene70530 | 0.801123 | 1.04E-48 | -1.69E-46 |
MS.gene051245 | MS.gene70530 | 0.809341 | 1.99E-50 | -1.69E-46 |
MS.gene051343 | MS.gene70530 | 0.836803 | 7.55E-57 | -1.69E-46 |
MS.gene051748 | MS.gene70530 | 0.815347 | 9.68E-52 | -1.69E-46 |
MS.gene051756 | MS.gene70530 | 0.846684 | 1.86E-59 | -1.69E-46 |
MS.gene051809 | MS.gene70530 | 0.817963 | 2.51E-52 | -1.69E-46 |
MS.gene051850 | MS.gene70530 | 0.821327 | 4.28E-53 | -1.69E-46 |
MS.gene051903 | MS.gene70530 | 0.801178 | 1.02E-48 | -1.69E-46 |
MS.gene053058 | MS.gene70530 | 0.851026 | 1.16E-60 | -1.69E-46 |
MS.gene053109 | MS.gene70530 | 0.8013 | 9.61E-49 | -1.69E-46 |
MS.gene053952 | MS.gene70530 | 0.80438 | 2.22E-49 | -1.69E-46 |
MS.gene055424 | MS.gene70530 | 0.824595 | 7.41E-54 | -1.69E-46 |
MS.gene056097 | MS.gene70530 | 0.862503 | 4.84E-64 | -1.69E-46 |
MS.gene056181 | MS.gene70530 | 0.825951 | 3.54E-54 | -1.69E-46 |
MS.gene056787 | MS.gene70530 | 0.82169 | 3.53E-53 | -1.69E-46 |
MS.gene056992 | MS.gene70530 | 0.802617 | 5.15E-49 | -1.69E-46 |
MS.gene057094 | MS.gene70530 | 0.857248 | 1.86E-62 | -1.69E-46 |
MS.gene057234 | MS.gene70530 | 0.826941 | 2.06E-54 | -1.69E-46 |
MS.gene057452 | MS.gene70530 | -0.833051 | 6.66E-56 | -1.69E-46 |
MS.gene057999 | MS.gene70530 | 0.80181 | 7.55E-49 | -1.69E-46 |
MS.gene058054 | MS.gene70530 | 0.81008 | 1.38E-50 | -1.69E-46 |
MS.gene058055 | MS.gene70530 | 0.808537 | 2.95E-50 | -1.69E-46 |
MS.gene058238 | MS.gene70530 | 0.816564 | 5.18E-52 | -1.69E-46 |
MS.gene058638 | MS.gene70530 | 0.816085 | 6.63E-52 | -1.69E-46 |
MS.gene058639 | MS.gene70530 | 0.822922 | 1.83E-53 | -1.69E-46 |
MS.gene058646 | MS.gene70530 | 0.800444 | 1.44E-48 | -1.69E-46 |
MS.gene058654 | MS.gene70530 | 0.822726 | 2.03E-53 | -1.69E-46 |
MS.gene058758 | MS.gene70530 | 0.817716 | 2.85E-52 | -1.69E-46 |
MS.gene05880 | MS.gene70530 | 0.813675 | 2.27E-51 | -1.69E-46 |
MS.gene059007 | MS.gene70530 | 0.813627 | 2.33E-51 | -1.69E-46 |
MS.gene059050 | MS.gene70530 | 0.803502 | 3.38E-49 | -1.69E-46 |
MS.gene059146 | MS.gene70530 | 0.803457 | 3.46E-49 | -1.69E-46 |
MS.gene059171 | MS.gene70530 | 0.803604 | 3.22E-49 | -1.69E-46 |
MS.gene060463 | MS.gene70530 | 0.83636 | 9.79E-57 | -1.69E-46 |
MS.gene060465 | MS.gene70530 | 0.843417 | 1.42E-58 | -1.69E-46 |
MS.gene060563 | MS.gene70530 | 0.848557 | 5.68E-60 | -1.69E-46 |
MS.gene061006 | MS.gene70530 | 0.800215 | 1.60E-48 | -1.69E-46 |
MS.gene061055 | MS.gene70530 | 0.80353 | 3.34E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene31234 | MS.gene70530 | PPI |
MS.gene60123 | MS.gene70530 | PPI |
MS.gene70530 | MS.gene050086 | PPI |
MS.gene70530 | MS.gene056232 | PPI |
MS.gene70530 | MS.gene025968 | PPI |
MS.gene70530 | MS.gene28880 | PPI |
MS.gene046194 | MS.gene70530 | PPI |
MS.gene039653 | MS.gene70530 | PPI |
MS.gene70530 | MS.gene050582 | PPI |
MS.gene029857 | MS.gene70530 | PPI |
MS.gene70530 | MS.gene028666 | PPI |
MS.gene70530 | MS.gene44789 | PPI |
MS.gene70530 | MS.gene44209 | PPI |
MS.gene22858 | MS.gene70530 | PPI |
MS.gene92023 | MS.gene70530 | PPI |
MS.gene70530 | MS.gene30914 | PPI |
MS.gene70530 | MS.gene073773 | PPI |
MS.gene017600 | MS.gene70530 | PPI |
MS.gene70530 | MS.gene012143 | PPI |
MS.gene70530 | MS.gene024505 | PPI |
MS.gene70530 | MS.gene65733 | PPI |
MS.gene70530 | MS.gene24579 | PPI |
MS.gene70530 | MS.gene039654 | PPI |
MS.gene70530 | MS.gene016605 | PPI |
MS.gene022057 | MS.gene70530 | PPI |
MS.gene70530 | MS.gene88497 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70530.t1 | MTR_3g080970 | 97.133 | 593 | 10 | 1 | 224 | 816 | 128 | 713 | 0.0 | 1179 |
MS.gene70530.t1 | MTR_3g080970 | 97.619 | 126 | 3 | 0 | 1 | 126 | 1 | 126 | 1.20e-74 | 258 |
MS.gene70530.t1 | MTR_4g057795 | 43.750 | 544 | 281 | 7 | 276 | 815 | 62 | 584 | 9.03e-154 | 462 |
MS.gene70530.t1 | MTR_2g095440 | 43.043 | 539 | 282 | 7 | 276 | 810 | 62 | 579 | 4.75e-151 | 455 |
MS.gene70530.t1 | MTR_2g095440 | 42.831 | 537 | 282 | 7 | 278 | 810 | 4 | 519 | 4.01e-150 | 451 |
MS.gene70530.t1 | MTR_2g095440 | 42.991 | 535 | 280 | 7 | 280 | 810 | 12 | 525 | 1.43e-149 | 449 |
MS.gene70530.t1 | MTR_7g018380 | 41.739 | 575 | 305 | 9 | 259 | 810 | 135 | 702 | 4.21e-148 | 452 |
MS.gene70530.t1 | MTR_1g066620 | 43.806 | 557 | 283 | 13 | 280 | 813 | 2 | 551 | 8.28e-147 | 443 |
MS.gene70530.t1 | MTR_8g075040 | 42.014 | 576 | 306 | 10 | 259 | 813 | 188 | 756 | 1.03e-146 | 450 |
MS.gene70530.t1 | MTR_4g057795 | 44.082 | 490 | 250 | 6 | 331 | 816 | 6 | 475 | 2.56e-137 | 416 |
MS.gene70530.t1 | MTR_3g095010 | 28.649 | 555 | 367 | 10 | 269 | 809 | 97 | 636 | 2.97e-58 | 211 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70530.t1 | AT1G64550 | 84.402 | 577 | 89 | 1 | 241 | 816 | 138 | 714 | 0.0 | 1033 |
MS.gene70530.t1 | AT1G64550 | 77.419 | 124 | 28 | 0 | 1 | 124 | 1 | 124 | 6.51e-55 | 202 |
MS.gene70530.t1 | AT5G60790 | 42.831 | 544 | 286 | 6 | 276 | 815 | 67 | 589 | 1.24e-151 | 457 |
MS.gene70530.t1 | AT3G54540 | 43.993 | 566 | 282 | 13 | 274 | 814 | 159 | 714 | 3.73e-151 | 460 |
MS.gene70530.t1 | AT3G54540 | 43.993 | 566 | 282 | 13 | 274 | 814 | 159 | 714 | 3.73e-151 | 460 |
MS.gene70530.t1 | AT5G64840 | 28.727 | 550 | 355 | 10 | 278 | 809 | 98 | 628 | 2.53e-62 | 223 |
MS.gene70530.t1 | AT5G09930 | 27.145 | 571 | 386 | 12 | 251 | 806 | 56 | 611 | 2.55e-58 | 211 |
MS.gene70530.t1 | AT5G09930 | 32.692 | 104 | 70 | 0 | 423 | 526 | 511 | 614 | 5.17e-12 | 70.1 |
MS.gene70530.t1 | AT4G33460 | 32.394 | 142 | 90 | 3 | 619 | 756 | 58 | 197 | 1.81e-11 | 66.2 |
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATCGCGGCGGTTGTTTA+TGG | 0.196388 | 3.1:+67446889 | None:intergenic |
CTGCAAACGGAGCGGCATTC+AGG | 0.223394 | 3.1:+67449146 | None:intergenic |
GCGCACCAATTATAAGTTTC+AGG | 0.227149 | 3.1:-67441859 | MS.gene70530:intron |
CTGGAGGGCCCATTCTATTT+AGG | 0.229690 | 3.1:-67441672 | MS.gene70530:CDS |
TTGAATCATACTTGGTTAAA+TGG | 0.234380 | 3.1:-67444385 | MS.gene70530:CDS |
CGAGGTCACTTGGGTTCTTT+TGG | 0.235399 | 3.1:-67440222 | MS.gene70530:CDS |
GCAACAAGATCAGAAGGTTT+TGG | 0.273641 | 3.1:-67446721 | MS.gene70530:CDS |
TTCTACCTGAAACTTATAAT+TGG | 0.273984 | 3.1:+67441854 | None:intergenic |
CATTGAGAGAGCCCAGCTTC+TGG | 0.284632 | 3.1:-67445168 | MS.gene70530:CDS |
GGGGAACTACAGCCAAGTTC+TGG | 0.286824 | 3.1:-67441304 | MS.gene70530:CDS |
TTGATCTCCATGCCGTCTTA+TGG | 0.292656 | 3.1:-67444409 | MS.gene70530:CDS |
AGCAAACTTTCGGATAAGTT+TGG | 0.323532 | 3.1:-67449125 | MS.gene70530:CDS |
TATTTAGGAATTTGAACTTT+GGG | 0.326994 | 3.1:-67441657 | MS.gene70530:CDS |
GGTTCTGTTACGCTCTCTTT+TGG | 0.327023 | 3.1:-67445939 | MS.gene70530:CDS |
GTTGTTGGTGTTGGTGGTAT+TGG | 0.331151 | 3.1:-67446672 | MS.gene70530:CDS |
GTGTAATATTTGACAATTCC+TGG | 0.335856 | 3.1:+67445250 | None:intergenic |
ACCGGCTCCGGTTTCTTCTT+CGG | 0.337080 | 3.1:+67449014 | None:intergenic |
CTCCGTTTGCAGCAAACTTT+CGG | 0.342316 | 3.1:-67449135 | MS.gene70530:CDS |
TTAACGATGTAACTTACTAT+TGG | 0.347119 | 3.1:+67449269 | None:intergenic |
TTGAGGTTTAAGTGTGTGTT+GGG | 0.349582 | 3.1:-67446961 | MS.gene70530:intron |
AGGCGGAGGAGGAACGAGAT+AGG | 0.349897 | 3.1:-67446645 | MS.gene70530:CDS |
GAGGATATTACACTCATCTT+AGG | 0.350571 | 3.1:-67437737 | None:intergenic |
TCAGTAGTTCACGAGGTTAT+AGG | 0.367986 | 3.1:-67449317 | MS.gene70530:CDS |
ATTCCTGGGAATGCCGTCTA+TGG | 0.376767 | 3.1:+67445265 | None:intergenic |
TGATGAACAGTTTGCTCAAA+TGG | 0.382086 | 3.1:-67446694 | MS.gene70530:CDS |
GCGGCACCGGCTATGATTAC+AGG | 0.384495 | 3.1:+67446765 | None:intergenic |
GGGGTGCTTGTATACCATCT+TGG | 0.388373 | 3.1:-67446941 | MS.gene70530:CDS |
CACGATGAGCATCTCATCTC+TGG | 0.391097 | 3.1:-67437832 | MS.gene70530:CDS |
AGCTCAGTTAATAGCCAAAC+AGG | 0.393678 | 3.1:-67445138 | MS.gene70530:intron |
ACTATACTTAAGTTAATTGC+TGG | 0.394054 | 3.1:-67441325 | MS.gene70530:CDS |
GTTGCCTTCTTCTGCATCTC+AGG | 0.394494 | 3.1:+67444622 | None:intergenic |
CTATTTAGGAATTTGAACTT+TGG | 0.399684 | 3.1:-67441658 | MS.gene70530:CDS |
CTTATGGCTTGAATCATACT+TGG | 0.400266 | 3.1:-67444393 | MS.gene70530:CDS |
CGAAGGAGAAGCGGCGGCAC+CGG | 0.401180 | 3.1:+67446752 | None:intergenic |
CGCCGCTTCTCCTTCGTTGG+CGG | 0.401576 | 3.1:-67446745 | MS.gene70530:CDS |
GCTGTTGAGGCGCTGATTCA+AGG | 0.402591 | 3.1:-67438004 | MS.gene70530:CDS |
GCAAACTTTCGGATAAGTTT+GGG | 0.402709 | 3.1:-67449124 | MS.gene70530:CDS |
GGTCATGATCTCATTCTTGA+TGG | 0.405003 | 3.1:-67445960 | MS.gene70530:CDS |
ACAAGGGCACTGATGCGAAC+GGG | 0.405045 | 3.1:-67444922 | MS.gene70530:CDS |
CCAATTGCATTTGGCGGAGA+TGG | 0.405699 | 3.1:-67446087 | MS.gene70530:CDS |
GAGCTTCTTCCTCCAGAAGC+TGG | 0.407300 | 3.1:+67445156 | None:intergenic |
GTTTCGGATGAATGAGGGTT+TGG | 0.410635 | 3.1:-67449051 | MS.gene70530:CDS |
TTCAGTCAGCACCATGTTGA+TGG | 0.411812 | 3.1:-67440819 | MS.gene70530:CDS |
TCATCAAGAAGCAACATATC+AGG | 0.412688 | 3.1:+67444538 | None:intergenic |
GTTCAAATTCCTAAATAGAA+TGG | 0.416086 | 3.1:+67441663 | None:intergenic |
GGAGCGGCATTCAGGGAAAT+CGG | 0.420688 | 3.1:+67449154 | None:intergenic |
GCTCAAATGGTTGTTGGTGT+TGG | 0.422104 | 3.1:-67446681 | MS.gene70530:CDS |
GGCGAAGTACCAATTGCATT+TGG | 0.422768 | 3.1:-67446096 | MS.gene70530:CDS |
GTAGATTTACCGATACCATT+TGG | 0.424990 | 3.1:+67441346 | None:intergenic |
CTGTGCAGTGATGCATCATT+TGG | 0.425194 | 3.1:-67441700 | MS.gene70530:intron |
CAACCCATGTACACTTTGTC+AGG | 0.431364 | 3.1:-67440177 | MS.gene70530:intron |
AGCTTCTTCCTCCAGAAGCT+GGG | 0.434425 | 3.1:+67445157 | None:intergenic |
GGGTGCTTGTATACCATCTT+GGG | 0.434893 | 3.1:-67446940 | MS.gene70530:CDS |
AGGGAAATCGGGAACGCATC+CGG | 0.435142 | 3.1:+67449166 | None:intergenic |
GAAGCCTTGCAGCACCGTTT+CGG | 0.435696 | 3.1:-67449067 | MS.gene70530:CDS |
GAGATGGAAGCGGTGAGAGC+AGG | 0.443078 | 3.1:-67446071 | MS.gene70530:CDS |
TGCCGCCGCTTCTCCTTCGT+TGG | 0.444910 | 3.1:-67446748 | MS.gene70530:CDS |
ATCCGAAAGTTTGCTGCAAA+CGG | 0.444920 | 3.1:+67449133 | None:intergenic |
TAAGTTTGGGAAGCATGGTT+TGG | 0.445253 | 3.1:-67449111 | MS.gene70530:CDS |
AATCTCAACGCAGGGCTTGT+TGG | 0.446907 | 3.1:-67445338 | MS.gene70530:intron |
TTCAAATTCCTAAATAGAAT+GGG | 0.447245 | 3.1:+67441664 | None:intergenic |
ACGCCCTCTTGGCATTATAT+CGG | 0.448088 | 3.1:+67442265 | None:intergenic |
GTTTCAGGCTCTGGATCGAC+TGG | 0.448248 | 3.1:-67442051 | MS.gene70530:intron |
TGGAAAACTTACAAGATGAT+TGG | 0.451286 | 3.1:+67439984 | None:intergenic |
AGCGGACCATCCACCGGCTC+CGG | 0.452908 | 3.1:+67449002 | None:intergenic |
TTTGAGGTTTAAGTGTGTGT+TGG | 0.452965 | 3.1:-67446962 | MS.gene70530:intron |
GCAGGGCTTGTTGGTAGAAA+CGG | 0.453343 | 3.1:-67445329 | MS.gene70530:intron |
GAACAGCACACGAACCTGTT+TGG | 0.453729 | 3.1:+67445124 | None:intergenic |
CCATCTCCGCCAAATGCAAT+TGG | 0.455176 | 3.1:+67446087 | None:intergenic |
CATGAATGGCGGTTGTTGAC+GGG | 0.459104 | 3.1:+67446797 | None:intergenic |
TGCAAACGGAGCGGCATTCA+GGG | 0.460739 | 3.1:+67449147 | None:intergenic |
CTAAATAGAATGGGCCCTCC+AGG | 0.462066 | 3.1:+67441673 | None:intergenic |
CGGAAGACAGTCCCAGAACT+TGG | 0.462974 | 3.1:+67441292 | None:intergenic |
AGATAGTGAAATTATCCATA+TGG | 0.465348 | 3.1:+67445991 | None:intergenic |
CACTGTGAAGGATATCCATA+TGG | 0.468849 | 3.1:-67446006 | MS.gene70530:CDS |
GATAATTTCACTATCTCTGT+TGG | 0.470849 | 3.1:-67445984 | MS.gene70530:CDS |
GGTGCGCCTGGTCTATCATC+TGG | 0.471714 | 3.1:+67441875 | None:intergenic |
TCGTGCTTCACACACGCAAC+AGG | 0.477388 | 3.1:+67446044 | None:intergenic |
CAAATGGTTGTTGGTGTTGG+TGG | 0.479436 | 3.1:-67446678 | MS.gene70530:CDS |
CTGGAAGTGTGGAGGAGCTA+TGG | 0.480426 | 3.1:-67437813 | MS.gene70530:CDS |
TTGAACAAGGGACGCCCTCT+TGG | 0.481635 | 3.1:+67442254 | None:intergenic |
GATGCATCATTTGGTTATCC+TGG | 0.482876 | 3.1:-67441691 | MS.gene70530:CDS |
GGAGATCTCCTCGTCGCCGC+CGG | 0.484288 | 3.1:-67449185 | MS.gene70530:CDS |
CTATACTTAAGTTAATTGCT+GGG | 0.484866 | 3.1:-67441324 | MS.gene70530:CDS |
CAGTTTGCTCAAATGGTTGT+TGG | 0.485362 | 3.1:-67446687 | MS.gene70530:CDS |
CAGGGCTTGTTGGTAGAAAC+GGG | 0.486158 | 3.1:-67445328 | MS.gene70530:CDS |
GCACCTTCGCTGAGTATAAG+AGG | 0.493363 | 3.1:-67437756 | MS.gene70530:CDS |
CATATAAAGAAGAGGATTTG+AGG | 0.494310 | 3.1:+67440785 | None:intergenic |
GCTGCAAGGCTTCTTACCGT+TGG | 0.494682 | 3.1:+67449077 | None:intergenic |
GGGAACTACAGCCAAGTTCT+GGG | 0.495305 | 3.1:-67441303 | MS.gene70530:CDS |
CAAGGTCTTGTGTTATTCCA+AGG | 0.495588 | 3.1:-67437986 | MS.gene70530:CDS |
TATACCTGACAAAGTGTACA+TGG | 0.498928 | 3.1:+67440173 | None:intergenic |
CGCCAACGAAGGAGAAGCGG+CGG | 0.502804 | 3.1:+67446746 | None:intergenic |
ATAGGGTGGTTCGTCGCGGC+GGG | 0.507802 | 3.1:-67446627 | MS.gene70530:CDS |
GGCGGAGGAGGAACGAGATA+GGG | 0.507932 | 3.1:-67446644 | MS.gene70530:CDS |
TTTGCAGTGGTTGGACCAAA+TGG | 0.509188 | 3.1:-67441361 | MS.gene70530:intron |
GTGGTATTGGACAGAGGCGG+AGG | 0.510395 | 3.1:-67446659 | MS.gene70530:CDS |
TGTAATATTTGACAATTCCT+GGG | 0.512737 | 3.1:+67445251 | None:intergenic |
CCTGGTCTATCATCTGGAGT+GGG | 0.512756 | 3.1:+67441881 | None:intergenic |
GAGCGGCATTCAGGGAAATC+GGG | 0.512789 | 3.1:+67449155 | None:intergenic |
GCGTGTGTGAAGCACGAGGC+TGG | 0.512904 | 3.1:-67446038 | MS.gene70530:CDS |
CTCTCCTGAGATGCAGAAGA+AGG | 0.514610 | 3.1:-67444626 | MS.gene70530:CDS |
TGAAGCTCCGAAGAAGAAAC+CGG | 0.517022 | 3.1:-67449021 | MS.gene70530:CDS |
AAACTTATAATTGGTGCGCC+TGG | 0.520729 | 3.1:+67441863 | None:intergenic |
GCCGACGAGGATTTCGACTT+CGG | 0.522954 | 3.1:-67449239 | MS.gene70530:CDS |
GACTTCGGCCTCGACGGCGA+AGG | 0.524522 | 3.1:-67449224 | MS.gene70530:CDS |
GTATTGGACAGAGGCGGAGG+AGG | 0.526793 | 3.1:-67446656 | MS.gene70530:CDS |
CCTTGATTCTAGATTGAACA+AGG | 0.531578 | 3.1:+67442241 | None:intergenic |
AGATGGAAGCGGTGAGAGCA+GGG | 0.532113 | 3.1:-67446070 | MS.gene70530:CDS |
CTTAAAAGTTATCTTCGCAA+AGG | 0.533247 | 3.1:+67440038 | None:intergenic |
TCATGAATGGCGGTTGTTGA+CGG | 0.533663 | 3.1:+67446796 | None:intergenic |
TCGGATAAGTTTGGGAAGCA+TGG | 0.536309 | 3.1:-67449116 | MS.gene70530:CDS |
GTGAAGCACGAGGCTGGTGG+TGG | 0.537830 | 3.1:-67446032 | MS.gene70530:CDS |
CATCATTTGGTTATCCTGGA+GGG | 0.538782 | 3.1:-67441687 | MS.gene70530:CDS |
TGGGAAGCATGGTTTGGTGA+AGG | 0.541915 | 3.1:-67449105 | MS.gene70530:CDS |
ATACCATGAGAATGCCTCCT+TGG | 0.542842 | 3.1:+67437969 | None:intergenic |
CTTGTATACCATCTTGGGTG+TGG | 0.543715 | 3.1:-67446935 | MS.gene70530:CDS |
ACAGGAAGATGTATCATGAA+TGG | 0.543796 | 3.1:+67446783 | None:intergenic |
TATACTCAGCGAAGGTGCCA+TGG | 0.544782 | 3.1:+67437761 | None:intergenic |
ATATCGGAACTTGTCAATGA+AGG | 0.546404 | 3.1:+67442281 | None:intergenic |
CGCCGCCAACGAAGGAGAAG+CGG | 0.547186 | 3.1:+67446743 | None:intergenic |
CCTTGTTCAATCTAGAATCA+AGG | 0.547740 | 3.1:-67442241 | MS.gene70530:intron |
GCATTTGGCGGAGATGGAAG+CGG | 0.549745 | 3.1:-67446081 | MS.gene70530:CDS |
ATGCCATAGACGGCATTCCC+AGG | 0.550487 | 3.1:-67445268 | MS.gene70530:CDS |
TCATCAAGCAATATTATATG+TGG | 0.550810 | 3.1:+67440012 | None:intergenic |
GTTGCTTCTTGATGAGCCTA+CGG | 0.554646 | 3.1:-67444530 | MS.gene70530:intron |
GATGCGAACGGGGCAGTGAA+AGG | 0.557433 | 3.1:-67444911 | MS.gene70530:CDS |
CATCTTCCTGTAATCATAGC+CGG | 0.557551 | 3.1:-67446771 | MS.gene70530:CDS |
AATTTCACTATCTCTGTTGG+TGG | 0.557567 | 3.1:-67445981 | MS.gene70530:CDS |
AAACCCTCATTCATCCGAAA+CGG | 0.559447 | 3.1:+67449053 | None:intergenic |
GACAAGGGCACTGATGCGAA+CGG | 0.560701 | 3.1:-67444923 | MS.gene70530:CDS |
GACTGTCTTCCGTTCTGCCA+AGG | 0.562442 | 3.1:-67441281 | MS.gene70530:intron |
GATTTCGACTTCGGCCTCGA+CGG | 0.563886 | 3.1:-67449230 | MS.gene70530:CDS |
AAACTTACAAGATGATTGGA+TGG | 0.564229 | 3.1:+67439988 | None:intergenic |
TATAAATTACCTTGGCAGAA+CGG | 0.565102 | 3.1:+67441272 | None:intergenic |
AGCACCGTTTCGGATGAATG+AGG | 0.566933 | 3.1:-67449057 | MS.gene70530:CDS |
TCCGAAGAAGAAACCGGAGC+CGG | 0.567539 | 3.1:-67449015 | MS.gene70530:CDS |
CCCACTCCAGATGATAGACC+AGG | 0.568463 | 3.1:-67441881 | MS.gene70530:CDS |
TCAGCGAAGGTGCCATGGAA+TGG | 0.568500 | 3.1:+67437766 | None:intergenic |
CAACGCATCATATAAAGAAG+AGG | 0.568867 | 3.1:+67440777 | None:intergenic |
GAATGGTGCCACTCTACCCT+CGG | 0.569604 | 3.1:+67437783 | None:intergenic |
GAAGGTGCTTTCGATGCCCT+CGG | 0.569894 | 3.1:-67449206 | MS.gene70530:CDS |
AAGAAACCGGAGCCGGTGGA+TGG | 0.570965 | 3.1:-67449008 | MS.gene70530:CDS |
AGATCAGACCACACCCAAGA+TGG | 0.571165 | 3.1:+67446927 | None:intergenic |
GCACCGTTTCGGATGAATGA+GGG | 0.573232 | 3.1:-67449056 | MS.gene70530:CDS |
GATAGGGTGGTTCGTCGCGG+CGG | 0.573787 | 3.1:-67446628 | MS.gene70530:CDS |
GCGTTCAAGAGCTCATATGC+AGG | 0.575845 | 3.1:-67444080 | MS.gene70530:intron |
CGGCGGTTGTTTATGGAGAG+AGG | 0.576071 | 3.1:+67446896 | None:intergenic |
GCATCATTTGGTTATCCTGG+AGG | 0.576224 | 3.1:-67441688 | MS.gene70530:CDS |
GGTAGAGTGGCACCATTCCA+TGG | 0.577765 | 3.1:-67437778 | MS.gene70530:CDS |
GGCGGTTGTTTATGGAGAGA+GGG | 0.578946 | 3.1:+67446897 | None:intergenic |
CACGTTGAGCAAGAAGTCGT+TGG | 0.580243 | 3.1:-67445230 | MS.gene70530:CDS |
GTGGTTGGACCAAATGGTAT+CGG | 0.580615 | 3.1:-67441355 | MS.gene70530:CDS |
GAAGTACCAATTGCATTTGG+CGG | 0.583190 | 3.1:-67446093 | MS.gene70530:CDS |
GGCGGCGCAACAAGATCAGA+AGG | 0.585552 | 3.1:-67446727 | MS.gene70530:CDS |
AAGCCGACGGTGACTGTGGT+TGG | 0.588125 | 3.1:+67446831 | None:intergenic |
GACAAAAGCGGACCATCCAC+CGG | 0.588243 | 3.1:+67448996 | None:intergenic |
CAAGGGCACTGATGCGAACG+GGG | 0.588851 | 3.1:-67444921 | MS.gene70530:CDS |
GCCTGGTCTATCATCTGGAG+TGG | 0.590672 | 3.1:+67441880 | None:intergenic |
CATTAATAATTGCATCAACA+TGG | 0.594015 | 3.1:+67442027 | None:intergenic |
GTAGGACTTGGATGCTGTTG+AGG | 0.594285 | 3.1:-67438017 | MS.gene70530:intron |
AGTATTAAGAACACACTGCA+AGG | 0.599569 | 3.1:+67445193 | None:intergenic |
GCATCTCATCTCTGGAAGTG+TGG | 0.601929 | 3.1:-67437824 | MS.gene70530:CDS |
CGAAAGCACCTTCGCCGTCG+AGG | 0.604583 | 3.1:+67449216 | None:intergenic |
GATTGTATCCGAGGGTAGAG+TGG | 0.606856 | 3.1:-67437791 | MS.gene70530:CDS |
AATGCCGTCTATGGCATGCA+TGG | 0.608499 | 3.1:+67445274 | None:intergenic |
ATGAATGAGGGTTTGGATGA+CGG | 0.609893 | 3.1:-67449044 | MS.gene70530:CDS |
AACAACCTTCTTGAGGCACA+TGG | 0.610321 | 3.1:-67445297 | MS.gene70530:CDS |
ATTCAAGCCATAAGACGGCA+TGG | 0.612908 | 3.1:+67444402 | None:intergenic |
GGAGCTATGGATTGTATCCG+AGG | 0.613164 | 3.1:-67437800 | MS.gene70530:CDS |
TCTTGTTGCGCCGCCAACGA+AGG | 0.614177 | 3.1:+67446735 | None:intergenic |
TCATCCGAAACGGTGCTGCA+AGG | 0.615311 | 3.1:+67449063 | None:intergenic |
GAAGAAGAAACCGGAGCCGG+TGG | 0.615475 | 3.1:-67449012 | MS.gene70530:CDS |
ATTCCAAGGAGGCATTCTCA+TGG | 0.616346 | 3.1:-67437972 | MS.gene70530:intron |
ATCTGAGGACAGTACTGACA+AGG | 0.616605 | 3.1:-67444939 | MS.gene70530:CDS |
CTTGTTGGTAGAAACGGGAC+GGG | 0.619268 | 3.1:-67445323 | MS.gene70530:CDS |
TCCCTCTCGATCTCCTCCGA+CGG | 0.619393 | 3.1:-67446866 | MS.gene70530:CDS |
GTTCCGATATAATGCCAAGA+GGG | 0.619421 | 3.1:-67442268 | MS.gene70530:CDS |
GTATGATTCAAGCCATAAGA+CGG | 0.619514 | 3.1:+67444397 | None:intergenic |
AGACGGCATGGAGATCAAGA+TGG | 0.621817 | 3.1:+67444414 | None:intergenic |
ATGGCCATGCATGCCATAGA+CGG | 0.621836 | 3.1:-67445278 | MS.gene70530:CDS |
AGCCGTCGGAGGAGATCGAG+AGG | 0.622044 | 3.1:+67446864 | None:intergenic |
GAACGCATCCGGCGGCGACG+AGG | 0.624290 | 3.1:+67449177 | None:intergenic |
TATACTTAAGTTAATTGCTG+GGG | 0.624643 | 3.1:-67441323 | MS.gene70530:CDS |
GGCGACGAGGAGATCTCCGA+GGG | 0.629004 | 3.1:+67449190 | None:intergenic |
CATGGCCATGTGCCTCAAGA+AGG | 0.629295 | 3.1:+67445292 | None:intergenic |
GAAGTAGACGCAGCCGTCGG+AGG | 0.632555 | 3.1:+67446853 | None:intergenic |
TTTCAGGCTCTGGATCGACT+GGG | 0.640002 | 3.1:-67442050 | MS.gene70530:intron |
GGCTTGAGCAAATATACAAG+AGG | 0.640033 | 3.1:-67444871 | MS.gene70530:CDS |
GCTTGTTGGTAGAAACGGGA+CGG | 0.640562 | 3.1:-67445324 | MS.gene70530:CDS |
GGAGGAGGAACGAGATAGGG+TGG | 0.642334 | 3.1:-67446641 | MS.gene70530:CDS |
TCTCATCTCTGGAAGTGTGG+AGG | 0.644641 | 3.1:-67437821 | MS.gene70530:CDS |
CTGGTCTATCATCTGGAGTG+GGG | 0.646160 | 3.1:+67441882 | None:intergenic |
GTGTTGGTGGTATTGGACAG+AGG | 0.646217 | 3.1:-67446665 | MS.gene70530:CDS |
CGAGATAGGGTGGTTCGTCG+CGG | 0.649068 | 3.1:-67446631 | MS.gene70530:CDS |
TATCCTCTTATACTCAGCGA+AGG | 0.649071 | 3.1:+67437753 | None:intergenic |
TGAGAGAGCCCAGCTTCTGG+AGG | 0.650248 | 3.1:-67445165 | MS.gene70530:CDS |
ACGAGCAGCGTCCATACTTG+CGG | 0.653892 | 3.1:-67444816 | MS.gene70530:intron |
GAAATCGGGAACGCATCCGG+CGG | 0.656003 | 3.1:+67449169 | None:intergenic |
TTGGAAGTAGACGCAGCCGT+CGG | 0.656747 | 3.1:+67446850 | None:intergenic |
TTTGGTGAAGGCGAAACCAA+CGG | 0.658701 | 3.1:-67449093 | MS.gene70530:CDS |
GCCGAAGTCGAAATCCTCGT+CGG | 0.662237 | 3.1:+67449238 | None:intergenic |
TTGGTGGTATTGGACAGAGG+CGG | 0.662325 | 3.1:-67446662 | MS.gene70530:CDS |
AGTCGAAATCCTCGTCGGCG+AGG | 0.663263 | 3.1:+67449243 | None:intergenic |
TGTCTGTTAGAGGGAATCTG+AGG | 0.669440 | 3.1:-67444954 | MS.gene70530:intron |
TGGTGGTGGTCACACTGTGA+AGG | 0.671121 | 3.1:-67446018 | MS.gene70530:CDS |
GAAGCTGAAGATGACAGAGG+TGG | 0.678417 | 3.1:-67449345 | None:intergenic |
CGTTAACGTCCTCGCCGACG+AGG | 0.679637 | 3.1:-67449252 | MS.gene70530:CDS |
CTTCCAACCACAGTCACCGT+CGG | 0.683644 | 3.1:-67446834 | MS.gene70530:CDS |
TGTGTGAAGCACGAGGCTGG+TGG | 0.684119 | 3.1:-67446035 | MS.gene70530:CDS |
AAAGTTTGCTGCAAACGGAG+CGG | 0.685855 | 3.1:+67449138 | None:intergenic |
TGAGGTTTAAGTGTGTGTTG+GGG | 0.687608 | 3.1:-67446960 | MS.gene70530:intron |
GAGCTATGGATTGTATCCGA+GGG | 0.688117 | 3.1:-67437799 | MS.gene70530:CDS |
AAGGAGATGCTATTTCACAA+AGG | 0.688418 | 3.1:-67444892 | MS.gene70530:CDS |
AGATCGAGAGGGATGAATCG+CGG | 0.689477 | 3.1:+67446876 | None:intergenic |
ATACCTGACAAAGTGTACAT+GGG | 0.689854 | 3.1:+67440174 | None:intergenic |
GGAAGATGTATCATGAATGG+CGG | 0.692299 | 3.1:+67446786 | None:intergenic |
GTGTAAGCCGACGGTGACTG+TGG | 0.693467 | 3.1:+67446827 | None:intergenic |
GTTGAAGCTGAAGATGACAG+AGG | 0.696326 | 3.1:-67449348 | None:intergenic |
GCCGTCGGAGGAGATCGAGA+GGG | 0.697997 | 3.1:+67446865 | None:intergenic |
GGACAATGAGTGTAAGCCGA+CGG | 0.702299 | 3.1:+67446818 | None:intergenic |
ATAAGTCAAGTCCATCAACA+TGG | 0.704139 | 3.1:+67440808 | None:intergenic |
GGTCTTGTGTTATTCCAAGG+AGG | 0.704483 | 3.1:-67437983 | MS.gene70530:CDS |
TTATCGCGTTCAGACAAAAG+CGG | 0.705329 | 3.1:+67448984 | None:intergenic |
GGCGAGATCAGTAGTTCACG+AGG | 0.707353 | 3.1:-67449324 | MS.gene70530:CDS |
CTTGATTCTAGATTGAACAA+GGG | 0.709521 | 3.1:+67442242 | None:intergenic |
TGTTGCGTGTGTGAAGCACG+AGG | 0.713473 | 3.1:-67446042 | MS.gene70530:CDS |
TCTGAGGACAGTACTGACAA+GGG | 0.720650 | 3.1:-67444938 | MS.gene70530:CDS |
AGTTCCGATATAATGCCAAG+AGG | 0.723283 | 3.1:-67442269 | MS.gene70530:CDS |
CGGCGACGAGGAGATCTCCG+AGG | 0.725892 | 3.1:+67449189 | None:intergenic |
TCGAGAGGGATGAATCGCGG+CGG | 0.764117 | 3.1:+67446879 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 67437738 | 67449357 | 67437738 | ID=MS.gene70530 |
chr3.1 | mRNA | 67437738 | 67449357 | 67437738 | ID=MS.gene70530.t1;Parent=MS.gene70530 |
chr3.1 | exon | 67448984 | 67449357 | 67448984 | ID=MS.gene70530.t1.exon1;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67448984 | 67449357 | 67448984 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67446617 | 67446971 | 67446617 | ID=MS.gene70530.t1.exon2;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67446617 | 67446971 | 67446617 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67445928 | 67446117 | 67445928 | ID=MS.gene70530.t1.exon3;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67445928 | 67446117 | 67445928 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67445139 | 67445347 | 67445139 | ID=MS.gene70530.t1.exon4;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67445139 | 67445347 | 67445139 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67444817 | 67444966 | 67444817 | ID=MS.gene70530.t1.exon5;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67444817 | 67444966 | 67444817 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67444531 | 67444659 | 67444531 | ID=MS.gene70530.t1.exon6;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67444531 | 67444659 | 67444531 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67444337 | 67444438 | 67444337 | ID=MS.gene70530.t1.exon7;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67444337 | 67444438 | 67444337 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67444081 | 67444227 | 67444081 | ID=MS.gene70530.t1.exon8;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67444081 | 67444227 | 67444081 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67442242 | 67442304 | 67442242 | ID=MS.gene70530.t1.exon9;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67442242 | 67442304 | 67442242 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67442020 | 67442066 | 67442020 | ID=MS.gene70530.t1.exon10;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67442020 | 67442066 | 67442020 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67441860 | 67441919 | 67441860 | ID=MS.gene70530.t1.exon11;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67441860 | 67441919 | 67441860 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67441632 | 67441714 | 67441632 | ID=MS.gene70530.t1.exon12;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67441632 | 67441714 | 67441632 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67441282 | 67441376 | 67441282 | ID=MS.gene70530.t1.exon13;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67441282 | 67441376 | 67441282 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67440770 | 67440856 | 67440770 | ID=MS.gene70530.t1.exon14;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67440770 | 67440856 | 67440770 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67440178 | 67440265 | 67440178 | ID=MS.gene70530.t1.exon15;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67440178 | 67440265 | 67440178 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67439996 | 67440081 | 67439996 | ID=MS.gene70530.t1.exon16;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67439996 | 67440081 | 67439996 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67437973 | 67438035 | 67437973 | ID=MS.gene70530.t1.exon17;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67437973 | 67438035 | 67437973 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
chr3.1 | exon | 67437738 | 67437860 | 67437738 | ID=MS.gene70530.t1.exon18;Parent=MS.gene70530.t1 |
chr3.1 | CDS | 67437738 | 67437860 | 67437738 | ID=cds.MS.gene70530.t1;Parent=MS.gene70530.t1 |
Gene Sequence |
Protein sequence |