Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01283.t1 | XP_003593373.1 | 94.4 | 124 | 7 | 0 | 1 | 124 | 1 | 124 | 6.70E-59 | 236.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01283.t1 | Q8LDI5 | 67.0 | 112 | 37 | 0 | 9 | 120 | 2 | 113 | 5.5e-38 | 158.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01283.t1 | B7FIZ6 | 94.4 | 124 | 7 | 0 | 1 | 124 | 1 | 124 | 4.8e-59 | 236.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene74758 | MS.gene01283 | PPI |
MS.gene014475 | MS.gene01283 | PPI |
MS.gene064706 | MS.gene01283 | PPI |
MS.gene043301 | MS.gene01283 | PPI |
MS.gene27271 | MS.gene01283 | PPI |
MS.gene42302 | MS.gene01283 | PPI |
MS.gene69451 | MS.gene01283 | PPI |
MS.gene24227 | MS.gene01283 | PPI |
MS.gene79654 | MS.gene01283 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01283.t1 | MTR_2g010750 | 94.355 | 124 | 7 | 0 | 1 | 124 | 1 | 124 | 4.39e-84 | 241 |
MS.gene01283.t1 | MTR_4g081380 | 59.322 | 118 | 48 | 0 | 5 | 122 | 6 | 123 | 2.91e-50 | 156 |
MS.gene01283.t1 | MTR_2g082590 | 60.714 | 112 | 44 | 0 | 8 | 119 | 9 | 120 | 1.76e-49 | 154 |
MS.gene01283.t1 | MTR_2g010750 | 89.873 | 79 | 8 | 0 | 1 | 79 | 1 | 79 | 2.98e-48 | 150 |
MS.gene01283.t1 | MTR_2g082590 | 54.400 | 125 | 44 | 1 | 8 | 119 | 9 | 133 | 1.52e-45 | 144 |
MS.gene01283.t1 | MTR_4g081380 | 62.857 | 70 | 26 | 0 | 5 | 74 | 6 | 75 | 6.50e-28 | 98.6 |
MS.gene01283.t1 | MTR_8g005320 | 37.500 | 112 | 70 | 0 | 1 | 112 | 18 | 129 | 3.48e-26 | 95.5 |
MS.gene01283.t1 | MTR_1g023140 | 40.385 | 104 | 62 | 0 | 9 | 112 | 6 | 109 | 9.40e-26 | 94.0 |
MS.gene01283.t1 | MTR_8g006685 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 4.60e-25 | 94.7 |
MS.gene01283.t1 | MTR_8g006560 | 37.500 | 112 | 70 | 0 | 1 | 112 | 87 | 198 | 4.60e-25 | 94.7 |
MS.gene01283.t1 | MTR_7g073680 | 35.897 | 117 | 75 | 0 | 2 | 118 | 17 | 133 | 8.38e-25 | 92.0 |
MS.gene01283.t1 | MTR_3g112410 | 40.000 | 105 | 63 | 0 | 8 | 112 | 5 | 109 | 9.49e-25 | 91.3 |
MS.gene01283.t1 | MTR_7g009070 | 39.362 | 94 | 57 | 0 | 20 | 113 | 37 | 130 | 1.93e-24 | 90.9 |
MS.gene01283.t1 | MTR_5g021180 | 39.640 | 111 | 67 | 0 | 8 | 118 | 7 | 117 | 4.77e-24 | 89.7 |
MS.gene01283.t1 | MTR_5g037950 | 39.048 | 105 | 64 | 0 | 9 | 113 | 19 | 123 | 7.37e-18 | 73.9 |
MS.gene01283.t1 | MTR_8g107460 | 31.731 | 104 | 71 | 0 | 9 | 112 | 254 | 357 | 3.61e-17 | 75.9 |
MS.gene01283.t1 | MTR_5g037930 | 36.190 | 105 | 67 | 0 | 9 | 113 | 20 | 124 | 5.63e-16 | 68.9 |
MS.gene01283.t1 | MTR_5g037890 | 38.095 | 105 | 65 | 0 | 9 | 113 | 18 | 122 | 1.19e-15 | 68.2 |
MS.gene01283.t1 | MTR_1g098660 | 34.091 | 88 | 56 | 2 | 28 | 113 | 75 | 162 | 4.81e-14 | 65.1 |
MS.gene01283.t1 | MTR_4g088905 | 33.708 | 89 | 59 | 0 | 24 | 112 | 14 | 102 | 2.24e-13 | 65.5 |
MS.gene01283.t1 | MTR_8g059015 | 35.632 | 87 | 54 | 2 | 32 | 116 | 90 | 176 | 3.86e-12 | 60.1 |
MS.gene01283.t1 | MTR_7g102130 | 29.630 | 81 | 55 | 1 | 32 | 112 | 46 | 124 | 4.00e-12 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01283.t1 | AT1G11530 | 66.964 | 112 | 37 | 0 | 9 | 120 | 2 | 113 | 3.57e-52 | 160 |
MS.gene01283.t1 | AT3G51030 | 40.952 | 105 | 62 | 0 | 8 | 112 | 5 | 109 | 2.16e-26 | 95.5 |
MS.gene01283.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.53e-25 | 94.0 |
MS.gene01283.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.53e-25 | 94.0 |
MS.gene01283.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 4.07e-25 | 93.2 |
MS.gene01283.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 4.07e-25 | 93.2 |
MS.gene01283.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 4.07e-25 | 93.2 |
MS.gene01283.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.12e-24 | 91.3 |
MS.gene01283.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.12e-24 | 91.3 |
MS.gene01283.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.12e-24 | 91.3 |
MS.gene01283.t1 | AT5G39950 | 36.111 | 108 | 69 | 0 | 5 | 112 | 21 | 128 | 3.09e-22 | 85.5 |
MS.gene01283.t1 | AT1G45145 | 34.906 | 106 | 69 | 0 | 7 | 112 | 3 | 108 | 1.50e-21 | 83.2 |
MS.gene01283.t1 | AT1G59730 | 37.864 | 103 | 64 | 0 | 11 | 113 | 23 | 125 | 2.66e-20 | 80.5 |
MS.gene01283.t1 | AT1G19730 | 39.362 | 94 | 56 | 1 | 20 | 112 | 17 | 110 | 3.58e-20 | 79.7 |
MS.gene01283.t1 | AT5G42980 | 33.962 | 106 | 70 | 0 | 8 | 113 | 4 | 109 | 9.60e-19 | 75.9 |
MS.gene01283.t1 | AT1G69880 | 28.571 | 112 | 80 | 0 | 7 | 118 | 35 | 146 | 1.91e-17 | 73.6 |
MS.gene01283.t1 | AT3G17880 | 31.132 | 106 | 73 | 0 | 7 | 112 | 261 | 366 | 2.88e-16 | 73.6 |
MS.gene01283.t1 | AT3G17880 | 31.132 | 106 | 73 | 0 | 7 | 112 | 268 | 373 | 2.95e-16 | 73.6 |
MS.gene01283.t1 | AT1G43560 | 34.066 | 91 | 58 | 2 | 29 | 117 | 74 | 164 | 1.66e-13 | 63.5 |
MS.gene01283.t1 | AT1G76760 | 33.333 | 87 | 56 | 2 | 29 | 113 | 79 | 165 | 2.27e-13 | 63.5 |
MS.gene01283.t1 | AT4G32580 | 32.143 | 84 | 57 | 0 | 29 | 112 | 19 | 102 | 3.16e-13 | 62.8 |
MS.gene01283.t1 | AT4G04950 | 34.146 | 82 | 54 | 0 | 31 | 112 | 21 | 102 | 5.15e-13 | 64.7 |
MS.gene01283.t1 | AT3G15360 | 36.047 | 86 | 53 | 2 | 33 | 116 | 106 | 191 | 8.42e-13 | 62.4 |
MS.gene01283.t1 | AT1G52990 | 29.167 | 96 | 67 | 1 | 22 | 116 | 218 | 313 | 1.68e-12 | 62.8 |
MS.gene01283.t1 | AT3G53220 | 25.893 | 112 | 81 | 1 | 1 | 112 | 13 | 122 | 2.88e-12 | 59.7 |
MS.gene01283.t1 | AT2G35010 | 29.524 | 105 | 72 | 1 | 11 | 113 | 86 | 190 | 1.18e-11 | 59.3 |
MS.gene01283.t1 | AT2G35010 | 29.524 | 105 | 72 | 1 | 11 | 113 | 86 | 190 | 1.18e-11 | 59.3 |
MS.gene01283.t1 | AT1G31020 | 28.829 | 111 | 77 | 1 | 5 | 113 | 45 | 155 | 3.18e-11 | 57.4 |
Find 22 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTCACTTTGCTGCTTCA+TGG | 0.226032 | 2.2:+70808264 | MS.gene01283:CDS |
GAGATTAAGAAAAGGATAGA+AGG | 0.306679 | 2.2:+70809820 | MS.gene01283:CDS |
ACAGAGAGAAACAGAAAATC+TGG | 0.372687 | 2.2:-70808341 | None:intergenic |
GAGAATTCTGATTAGAAGCT+TGG | 0.402282 | 2.2:-70808136 | None:intergenic |
GGCCACTAGGAATGATATAA+AGG | 0.411501 | 2.2:+70809729 | MS.gene01283:CDS |
TGATTGATTCTTTGCAATCA+TGG | 0.469609 | 2.2:+70808099 | MS.gene01283:CDS |
AGATTAAGAAAAGGATAGAA+GGG | 0.491722 | 2.2:+70809821 | MS.gene01283:CDS |
CGGTTCAGGAGGTGGCCACT+AGG | 0.510920 | 2.2:+70809716 | MS.gene01283:intron |
GCTGAAGGATGGTGCTCCAT+TGG | 0.519133 | 2.2:+70809771 | MS.gene01283:CDS |
AGAATCAATCACCACTACCT+TGG | 0.527546 | 2.2:-70808087 | None:intergenic |
GCAAAACAAGTCCAAGGTAG+TGG | 0.548033 | 2.2:+70808076 | MS.gene01283:CDS |
GATTGATTCTTTGCAATCAT+GGG | 0.549324 | 2.2:+70808100 | MS.gene01283:CDS |
ATCCAGAGGAGATTAAGAAA+AGG | 0.550537 | 2.2:+70809812 | MS.gene01283:CDS |
AATGGAATCATAGCCACTGA+TGG | 0.585805 | 2.2:-70808293 | None:intergenic |
GCACCAACTATCTTGTCCAA+TGG | 0.587312 | 2.2:-70809787 | None:intergenic |
TTCATGGTGCATGCCATCAG+TGG | 0.591969 | 2.2:+70808280 | MS.gene01283:CDS |
GCTCCATTGGACAAGATAGT+TGG | 0.601256 | 2.2:+70809784 | MS.gene01283:CDS |
TGCCTTTATATCATTCCTAG+TGG | 0.613641 | 2.2:-70809731 | None:intergenic |
CATAGAGCAAAACAAGTCCA+AGG | 0.613866 | 2.2:+70808070 | MS.gene01283:CDS |
TGTTGATGTTGATGAAGTCA+AGG | 0.653275 | 2.2:+70808361 | MS.gene01283:CDS |
CTAGGCAATTGATTCGCGAG+TGG | 0.669856 | 2.2:-70809854 | None:intergenic |
GATAGTTGGTGCTAATCCAG+AGG | 0.694394 | 2.2:+70809798 | MS.gene01283:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTAGTTATACATATATAT+AGG | + | chr2.2:70809329-70809348 | MS.gene01283:intron | 15.0% |
!!! | AAATGCATTGAAATTTTTTT+GGG | + | chr2.2:70809692-70809711 | MS.gene01283:intron | 15.0% |
!!! | TAAATGCATTGAAATTTTTT+TGG | + | chr2.2:70809691-70809710 | MS.gene01283:intron | 15.0% |
!! | GACTGTTTATAAAGAATTAA+AGG | - | chr2.2:70808202-70808221 | None:intergenic | 20.0% |
!! | GTGTTTATTTAGATATGTAA+TGG | - | chr2.2:70808476-70808495 | None:intergenic | 20.0% |
!! | TACAAGAATTGAAAACAAAT+GGG | - | chr2.2:70808399-70808418 | None:intergenic | 20.0% |
!!! | AATGCATTGAAATTTTTTTG+GGG | + | chr2.2:70809693-70809712 | MS.gene01283:intron | 20.0% |
!!! | ATTATATGACTGAATTTTGT+TGG | - | chr2.2:70808722-70808741 | None:intergenic | 20.0% |
!!! | CAATGTTTTTAAAACTTACT+CGG | + | chr2.2:70808175-70808194 | MS.gene01283:intron | 20.0% |
! | AAAATAAAAACAGCAATCTC+TGG | + | chr2.2:70808943-70808962 | MS.gene01283:intron | 25.0% |
! | AATGTTCTCATAACAGTAAA+AGG | - | chr2.2:70808602-70808621 | None:intergenic | 25.0% |
! | AGATTAAGAAAAGGATAGAA+GGG | + | chr2.2:70809821-70809840 | MS.gene01283:CDS | 25.0% |
! | ATGATATATGAGAACATCAT+TGG | + | chr2.2:70808568-70808587 | MS.gene01283:intron | 25.0% |
! | CTACAAGAATTGAAAACAAA+TGG | - | chr2.2:70808400-70808419 | None:intergenic | 25.0% |
! | TCATATCTATATCCACAAAA+AGG | - | chr2.2:70808552-70808571 | None:intergenic | 25.0% |
! | TTACTGTTATGAGAACATTA+TGG | + | chr2.2:70808603-70808622 | MS.gene01283:intron | 25.0% |
!! | TGAAACAGAAAAGTTTTTGT+TGG | + | chr2.2:70809631-70809650 | MS.gene01283:intron | 25.0% |
!!! | GATTGCTGTTTTTATTTTGA+AGG | - | chr2.2:70808941-70808960 | None:intergenic | 25.0% |
ATGGTATCAGTACAGAATTT+AGG | - | chr2.2:70808991-70809010 | None:intergenic | 30.0% | |
ATTCCTCATGAACAACTAAA+TGG | + | chr2.2:70808906-70808925 | MS.gene01283:intron | 30.0% | |
ATTCTCTACAGATATAACCT+GGG | + | chr2.2:70809125-70809144 | MS.gene01283:intron | 30.0% | |
GAGATTAAGAAAAGGATAGA+AGG | + | chr2.2:70809820-70809839 | MS.gene01283:CDS | 30.0% | |
GGTTTAATATTGTGTACTGA+TGG | + | chr2.2:70809664-70809683 | MS.gene01283:intron | 30.0% | |
TCAATGCATGAAAATAAGAC+AGG | - | chr2.2:70809614-70809633 | None:intergenic | 30.0% | |
TCAGTAAACATTTGACAAGA+CGG | - | chr2.2:70809476-70809495 | None:intergenic | 30.0% | |
TCTAATCACCATAATGATGT+CGG | - | chr2.2:70808784-70808803 | None:intergenic | 30.0% | |
TCTCATAACAGTAAAAGGTT+TGG | - | chr2.2:70808597-70808616 | None:intergenic | 30.0% | |
TGGTATCAGTACAGAATTTA+GGG | - | chr2.2:70808990-70809009 | None:intergenic | 30.0% | |
TTTAGATATGTAATGGTACG+AGG | - | chr2.2:70808469-70808488 | None:intergenic | 30.0% | |
! | ACATTGAAACTTTGACTTAC+AGG | - | chr2.2:70808161-70808180 | None:intergenic | 30.0% |
! | ATTTGAAATCTGGCTTAAAG+GGG | + | chr2.2:70809158-70809177 | MS.gene01283:intron | 30.0% |
! | GAGGAATATTTAAAACGAGA+CGG | - | chr2.2:70808893-70808912 | None:intergenic | 30.0% |
! | GATTGATTCTTTGCAATCAT+GGG | + | chr2.2:70808100-70808119 | MS.gene01283:CDS | 30.0% |
! | GATTTGAAATCTGGCTTAAA+GGG | + | chr2.2:70809157-70809176 | MS.gene01283:intron | 30.0% |
! | GTTTTTGTTGGTGTGATTAA+TGG | + | chr2.2:70809643-70809662 | MS.gene01283:intron | 30.0% |
! | TGATTGATTCTTTGCAATCA+TGG | + | chr2.2:70808099-70808118 | MS.gene01283:CDS | 30.0% |
! | TTCAAGTTCCAATTTCCAAT+TGG | - | chr2.2:70808856-70808875 | None:intergenic | 30.0% |
AAAAACAGCAATCTCTGGTT+TGG | + | chr2.2:70808948-70808967 | MS.gene01283:intron | 35.0% | |
AAAGGAAAAGCTCAATTCAC+AGG | - | chr2.2:70809447-70809466 | None:intergenic | 35.0% | |
AAATGTTTACCGTTTCTACG+CGG | + | chr2.2:70809525-70809544 | MS.gene01283:intron | 35.0% | |
ACAGAGAGAAACAGAAAATC+TGG | - | chr2.2:70808344-70808363 | None:intergenic | 35.0% | |
ACTTGGGATACTGTTCTTTA+TGG | - | chr2.2:70809010-70809029 | None:intergenic | 35.0% | |
ATCCAGAGGAGATTAAGAAA+AGG | + | chr2.2:70809812-70809831 | MS.gene01283:CDS | 35.0% | |
ATGGAAATCCGACATCATTA+TGG | + | chr2.2:70808773-70808792 | MS.gene01283:intron | 35.0% | |
ATTAGTTATCCGCGTAGAAA+CGG | - | chr2.2:70809537-70809556 | None:intergenic | 35.0% | |
CAACCATTTAGTTGTTCATG+AGG | - | chr2.2:70808912-70808931 | None:intergenic | 35.0% | |
CAGTTGCAACTTGTAGTAAA+AGG | - | chr2.2:70808694-70808713 | None:intergenic | 35.0% | |
CTATGTCGAGTCAAAATCAA+TGG | - | chr2.2:70809238-70809257 | None:intergenic | 35.0% | |
CTCTGATACCATCTAAAGAA+CGG | + | chr2.2:70809266-70809285 | MS.gene01283:intron | 35.0% | |
CTGTAGAGAATCAATTTCAG+TGG | - | chr2.2:70809116-70809135 | None:intergenic | 35.0% | |
GAGAATTCTGATTAGAAGCT+TGG | - | chr2.2:70808139-70808158 | None:intergenic | 35.0% | |
GATGCGAATTCTTCGAAAAA+TGG | - | chr2.2:70808314-70808333 | None:intergenic | 35.0% | |
GATTCTCTACAGATATAACC+TGG | + | chr2.2:70809124-70809143 | MS.gene01283:intron | 35.0% | |
TCCTTCAGCAACAAAAATGT+TGG | - | chr2.2:70809760-70809779 | None:intergenic | 35.0% | |
TCGAGTCAAAATCAATGGTA+CGG | - | chr2.2:70809233-70809252 | None:intergenic | 35.0% | |
TGCAGGTACAAAAAACCAAT+GGG | + | chr2.2:70809205-70809224 | MS.gene01283:intron | 35.0% | |
TGCCTTTATATCATTCCTAG+TGG | - | chr2.2:70809734-70809753 | None:intergenic | 35.0% | |
TTCTACGCGGATAACTAATA+TGG | + | chr2.2:70809538-70809557 | MS.gene01283:intron | 35.0% | |
TTGCAGGTACAAAAAACCAA+TGG | + | chr2.2:70809204-70809223 | MS.gene01283:intron | 35.0% | |
TTTGAGAGAATCTGCTTGTA+TGG | + | chr2.2:70808811-70808830 | MS.gene01283:intron | 35.0% | |
! | ACATTTTTGTTGCTGAAGGA+TGG | + | chr2.2:70809760-70809779 | MS.gene01283:CDS | 35.0% |
! | AGTGTCCATTGTAGAGTATT+CGG | + | chr2.2:70808750-70808769 | MS.gene01283:intron | 35.0% |
! | ATCCTTTTCTTAATCTCCTC+TGG | - | chr2.2:70809817-70809836 | None:intergenic | 35.0% |
! | GGATTTGAAATCTGGCTTAA+AGG | + | chr2.2:70809156-70809175 | MS.gene01283:intron | 35.0% |
! | TGGAAGTCAAAACCTTTTTG+TGG | + | chr2.2:70808537-70808556 | MS.gene01283:intron | 35.0% |
! | TGTCATTGATCATGTCACTT+GGG | - | chr2.2:70809026-70809045 | None:intergenic | 35.0% |
! | TGTTGATGTTGATGAAGTCA+AGG | + | chr2.2:70808361-70808380 | MS.gene01283:CDS | 35.0% |
! | TTATGGTGCCAATTGGAAAT+TGG | + | chr2.2:70808845-70808864 | MS.gene01283:intron | 35.0% |
! | TTTGAAATCTGGCTTAAAGG+GGG | + | chr2.2:70809159-70809178 | MS.gene01283:intron | 35.0% |
!! | AGCATGATGGATTTGAAATC+TGG | + | chr2.2:70809148-70809167 | MS.gene01283:intron | 35.0% |
!! | CAATCTGTTTCTGAGCATTA+GGG | - | chr2.2:70809413-70809432 | None:intergenic | 35.0% |
!! | CAGTCTTCAAATTGATTTGC+TGG | + | chr2.2:70808217-70808236 | MS.gene01283:intron | 35.0% |
!! | GGAACTTGAATTTTAGAGAG+AGG | + | chr2.2:70808866-70808885 | MS.gene01283:intron | 35.0% |
!!! | GCATTGAAATTTTTTTGGGG+CGG | + | chr2.2:70809696-70809715 | MS.gene01283:intron | 35.0% |
AATGCTCAGAAACAGATTGC+TGG | + | chr2.2:70809414-70809433 | MS.gene01283:intron | 40.0% | |
AATGGAATCATAGCCACTGA+TGG | - | chr2.2:70808296-70808315 | None:intergenic | 40.0% | |
AGAATCAATCACCACTACCT+TGG | - | chr2.2:70808090-70808109 | None:intergenic | 40.0% | |
CATAGAGCAAAACAAGTCCA+AGG | + | chr2.2:70808070-70808089 | MS.gene01283:CDS | 40.0% | |
CATCTAAAGAACGGATGGAA+AGG | + | chr2.2:70809275-70809294 | MS.gene01283:intron | 40.0% | |
CTGGGTCTATTTGCATAACA+TGG | - | chr2.2:70809082-70809101 | None:intergenic | 40.0% | |
CTGTCAACTTTCTGTTTGAG+TGG | + | chr2.2:70808517-70808536 | MS.gene01283:intron | 40.0% | |
CTGTCATTGATCATGTCACT+TGG | - | chr2.2:70809027-70809046 | None:intergenic | 40.0% | |
CTTTCCATCCGTTCTTTAGA+TGG | - | chr2.2:70809277-70809296 | None:intergenic | 40.0% | |
GATACCATCTAAAGAACGGA+TGG | + | chr2.2:70809270-70809289 | MS.gene01283:intron | 40.0% | |
GGCCACTAGGAATGATATAA+AGG | + | chr2.2:70809729-70809748 | MS.gene01283:CDS | 40.0% | |
TAACTTATGAGACGTCTTGC+AGG | + | chr2.2:70809188-70809207 | MS.gene01283:intron | 40.0% | |
TCCATCCGAATACTCTACAA+TGG | - | chr2.2:70808758-70808777 | None:intergenic | 40.0% | |
! | GCCAACATTTTTGTTGCTGA+AGG | + | chr2.2:70809756-70809775 | MS.gene01283:CDS | 40.0% |
! | TCCATTGTAGAGTATTCGGA+TGG | + | chr2.2:70808754-70808773 | MS.gene01283:intron | 40.0% |
! | TTGTTCACTTTGCTGCTTCA+TGG | + | chr2.2:70808264-70808283 | MS.gene01283:CDS | 40.0% |
!! | GCAATCTGTTTCTGAGCATT+AGG | - | chr2.2:70809414-70809433 | None:intergenic | 40.0% |
!!! | AAATTTTTTTGGGGCGGTTC+AGG | + | chr2.2:70809702-70809721 | MS.gene01283:intron | 40.0% |
!!! | CTTGGACTTGTTTTGCTCTA+TGG | - | chr2.2:70808072-70808091 | None:intergenic | 40.0% |
AGAATCTGCTTGTATGGCGA+AGG | + | chr2.2:70808817-70808836 | MS.gene01283:intron | 45.0% | |
ATCAATGGTACGGATCCCAT+TGG | - | chr2.2:70809223-70809242 | None:intergenic | 45.0% | |
CGATGTCAAAAGAGTAGCTG+AGG | - | chr2.2:70809056-70809075 | None:intergenic | 45.0% | |
GCAAAACAAGTCCAAGGTAG+TGG | + | chr2.2:70808076-70808095 | MS.gene01283:CDS | 45.0% | |
GCAAATAGACCCAGTCTTCA+CGG | + | chr2.2:70809088-70809107 | MS.gene01283:intron | 45.0% | |
GCACCAACTATCTTGTCCAA+TGG | - | chr2.2:70809790-70809809 | None:intergenic | 45.0% | |
GCTCCATTGGACAAGATAGT+TGG | + | chr2.2:70809784-70809803 | MS.gene01283:CDS | 45.0% | |
TTCAAATCCATCATGCTCCC+AGG | - | chr2.2:70809145-70809164 | None:intergenic | 45.0% | |
TTGACAAGACGGTCGCTAAA+AGG | - | chr2.2:70809465-70809484 | None:intergenic | 45.0% | |
! | GATATAACCTGGGAGCATGA+TGG | + | chr2.2:70809135-70809154 | MS.gene01283:intron | 45.0% |
! | GGTTTGCTTATGGTGCCAAT+TGG | + | chr2.2:70808838-70808857 | MS.gene01283:intron | 45.0% |
! | GTATGGCGAAGGTTTGCTTA+TGG | + | chr2.2:70808828-70808847 | MS.gene01283:intron | 45.0% |
!! | GATAGTTGGTGCTAATCCAG+AGG | + | chr2.2:70809798-70809817 | MS.gene01283:CDS | 45.0% |
ATGTAGCCCACCACACTTAG+TGG | + | chr2.2:70808639-70808658 | MS.gene01283:intron | 50.0% | |
CTTGTCCCACTAAGTGTGGT+GGG | - | chr2.2:70808648-70808667 | None:intergenic | 50.0% | |
TGTAGCCCACCACACTTAGT+GGG | + | chr2.2:70808640-70808659 | MS.gene01283:intron | 50.0% | |
TTCATGGTGCATGCCATCAG+TGG | + | chr2.2:70808280-70808299 | MS.gene01283:CDS | 50.0% | |
! | AAGCCTTGTCCCACTAAGTG+TGG | - | chr2.2:70808652-70808671 | None:intergenic | 50.0% |
!! | CTAGGCAATTGATTCGCGAG+TGG | - | chr2.2:70809857-70809876 | None:intergenic | 50.0% |
!!! | TTTTTTTGGGGCGGTTCAGG+AGG | + | chr2.2:70809705-70809724 | MS.gene01283:intron | 50.0% |
CCACCACACTTAGTGGGACA+AGG | + | chr2.2:70808646-70808665 | MS.gene01283:intron | 55.0% | |
CCTTGTCCCACTAAGTGTGG+TGG | - | chr2.2:70808649-70808668 | None:intergenic | 55.0% | |
GCTGAAGGATGGTGCTCCAT+TGG | + | chr2.2:70809771-70809790 | MS.gene01283:CDS | 55.0% | |
TCAGTGGAGCCGTGAAGACT+GGG | - | chr2.2:70809100-70809119 | None:intergenic | 55.0% | |
TTCAGTGGAGCCGTGAAGAC+TGG | - | chr2.2:70809101-70809120 | None:intergenic | 55.0% | |
!!! | TTTTGGGGCGGTTCAGGAGG+TGG | + | chr2.2:70809708-70809727 | MS.gene01283:intron | 60.0% |
CGGTTCAGGAGGTGGCCACT+AGG | + | chr2.2:70809716-70809735 | MS.gene01283:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 70808062 | 70809876 | 70808062 | ID=MS.gene01283 |
chr2.2 | mRNA | 70808062 | 70809876 | 70808062 | ID=MS.gene01283.t1;Parent=MS.gene01283 |
chr2.2 | exon | 70808062 | 70808160 | 70808062 | ID=MS.gene01283.t1.exon1;Parent=MS.gene01283.t1 |
chr2.2 | CDS | 70808062 | 70808160 | 70808062 | ID=cds.MS.gene01283.t1;Parent=MS.gene01283.t1 |
chr2.2 | exon | 70808260 | 70808382 | 70808260 | ID=MS.gene01283.t1.exon2;Parent=MS.gene01283.t1 |
chr2.2 | CDS | 70808260 | 70808382 | 70808260 | ID=cds.MS.gene01283.t1;Parent=MS.gene01283.t1 |
chr2.2 | exon | 70809724 | 70809876 | 70809724 | ID=MS.gene01283.t1.exon3;Parent=MS.gene01283.t1 |
chr2.2 | CDS | 70809724 | 70809876 | 70809724 | ID=cds.MS.gene01283.t1;Parent=MS.gene01283.t1 |
Gene Sequence |
Protein sequence |