Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013037.t1 | RHN59613.1 | 99.1 | 115 | 1 | 0 | 1 | 115 | 32 | 146 | 6.60E-61 | 243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013037.t1 | Q1RMP0 | 38.2 | 110 | 67 | 1 | 7 | 115 | 13 | 122 | 1.9e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013037.t1 | G7JQD3 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 4.8e-61 | 243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26777 | MS.gene013037 | PPI |
| MS.gene013037 | MS.gene39636 | PPI |
| MS.gene022098 | MS.gene013037 | PPI |
| MS.gene013037 | MS.gene053492 | PPI |
| MS.gene013037 | MS.gene97308 | PPI |
| MS.gene013037 | MS.gene047813 | PPI |
| MS.gene013037 | MS.gene68633 | PPI |
| MS.gene013037 | MS.gene95440 | PPI |
| MS.gene013037 | MS.gene064140 | PPI |
| MS.gene013037 | MS.gene030166 | PPI |
| MS.gene26516 | MS.gene013037 | PPI |
| MS.gene43180 | MS.gene013037 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013037.t1 | MTR_3g102420 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 7.30e-83 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013037.t1 | AT3G25940 | 61.739 | 115 | 41 | 1 | 3 | 114 | 4 | 118 | 6.76e-45 | 142 |
| MS.gene013037.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene013037.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene013037.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene013037.t1 | AT1G20065 | 62.069 | 58 | 22 | 0 | 3 | 60 | 4 | 61 | 1.39e-19 | 76.3 |
| MS.gene013037.t1 | AT1G20065 | 56.000 | 50 | 22 | 0 | 3 | 52 | 4 | 53 | 1.69e-12 | 58.9 |
Find 27 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTTCTTCAGATATTAA+AGG | 0.236587 | 3.3:-83656534 | MS.gene013037:intron |
| TAATACCTGTCTGGTATAAA+AGG | 0.289694 | 3.3:+83654208 | None:intergenic |
| CCGCTGTGGTCATCAGTTTC+AGG | 0.290238 | 3.3:-83654056 | MS.gene013037:CDS |
| CAAAACCAAGTGTAACATAA+AGG | 0.353007 | 3.3:-83657620 | MS.gene013037:CDS |
| ACAGAAGGTGCAATTGTCTA+AGG | 0.372837 | 3.3:-83654367 | MS.gene013037:intron |
| CAGGATATCAGAAGGGAACT+TGG | 0.428753 | 3.3:-83654408 | MS.gene013037:CDS |
| CAGATGAGATCGGCGGATGA+AGG | 0.477672 | 3.3:-83654103 | MS.gene013037:CDS |
| AAAACCAAGTGTAACATAAA+GGG | 0.477760 | 3.3:-83657619 | MS.gene013037:intron |
| GAAGTCTCATAATACCTGTC+TGG | 0.504328 | 3.3:+83654199 | None:intergenic |
| TTCTTCAGATATTAAAGGAA+AGG | 0.539999 | 3.3:-83656529 | MS.gene013037:intron |
| CTGAAACTGATGACCACAGC+GGG | 0.546201 | 3.3:+83654057 | None:intergenic |
| TTTCTGTTCTGTCACTTGTG+TGG | 0.551638 | 3.3:-83657691 | MS.gene013037:CDS |
| AGATGAGATCGGCGGATGAA+GGG | 0.551664 | 3.3:-83654102 | MS.gene013037:CDS |
| TGTACCCTTTATGTTACACT+TGG | 0.568759 | 3.3:+83657615 | None:intergenic |
| CAACATGCGTAATCAGTTGA+GGG | 0.573529 | 3.3:+83657652 | None:intergenic |
| CGATCTAATTGAAGAACAGA+AGG | 0.578767 | 3.3:-83654382 | MS.gene013037:CDS |
| GTGGTTGGCAGGATATCAGA+AGG | 0.583152 | 3.3:-83654416 | MS.gene013037:intron |
| TTCCTAATTTCAGATGAGAT+CGG | 0.584414 | 3.3:-83654113 | MS.gene013037:intron |
| GCAACATGCGTAATCAGTTG+AGG | 0.588882 | 3.3:+83657651 | None:intergenic |
| AAGTTACACAATTTCTGCTG+AGG | 0.612146 | 3.3:-83656502 | MS.gene013037:intron |
| TCGCGACCACGTGAATACAT+TGG | 0.631343 | 3.3:+83657715 | None:intergenic |
| CTAATTTCAGATGAGATCGG+CGG | 0.632502 | 3.3:-83654110 | MS.gene013037:intron |
| TTCTACACATGCACCCGCTG+TGG | 0.636738 | 3.3:-83654070 | MS.gene013037:CDS |
| TGGTTGGCAGGATATCAGAA+GGG | 0.653540 | 3.3:-83654415 | MS.gene013037:intron |
| CTTGTGTGGAACAATGCTCA+CGG | 0.660985 | 3.3:-83657677 | MS.gene013037:CDS |
| ACAGTGCCAATGTATTCACG+TGG | 0.744012 | 3.3:-83657721 | None:intergenic |
| CCTGAAACTGATGACCACAG+CGG | 0.764434 | 3.3:+83654056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATGTGAAAATAAAATT+TGG | - | chr3.3:83654312-83654331 | MS.gene013037:intron | 15.0% |
| !! | TAACTATAAATCATTCTTAT+CGG | + | chr3.3:83655900-83655919 | None:intergenic | 15.0% |
| !! | TATATATGGAAATAAACATT+AGG | - | chr3.3:83654624-83654643 | MS.gene013037:intron | 15.0% |
| !!! | ACATTTTTTACAACTTAATA+AGG | + | chr3.3:83654795-83654814 | None:intergenic | 15.0% |
| !!! | ATTCACAAATTATTGATTAT+TGG | - | chr3.3:83657300-83657319 | MS.gene013037:intron | 15.0% |
| !!! | CATTTTTTACAACTTAATAA+GGG | + | chr3.3:83654794-83654813 | None:intergenic | 15.0% |
| !!! | CTGTATTTATTTTTCTTTTT+GGG | - | chr3.3:83655685-83655704 | MS.gene013037:intron | 15.0% |
| !! | AAACATAGTGATATAATCAT+AGG | + | chr3.3:83655344-83655363 | None:intergenic | 20.0% |
| !! | AACTATAAATCATTCTTATC+GGG | + | chr3.3:83655899-83655918 | None:intergenic | 20.0% |
| !! | ATTTAATGACATGATCTTTA+AGG | - | chr3.3:83657436-83657455 | MS.gene013037:intron | 20.0% |
| !! | CAAATAACAACACTTATATA+TGG | - | chr3.3:83654610-83654629 | MS.gene013037:intron | 20.0% |
| !! | GGATATAACATGTTTAAATT+GGG | + | chr3.3:83655312-83655331 | None:intergenic | 20.0% |
| !! | TAAATATAACAGAGCTAATA+TGG | + | chr3.3:83657066-83657085 | None:intergenic | 20.0% |
| !! | TAAATCAAGATATGTTTACT+TGG | + | chr3.3:83657140-83657159 | None:intergenic | 20.0% |
| !! | TATGATTCATCAGTTAAAAT+AGG | - | chr3.3:83655051-83655070 | MS.gene013037:intron | 20.0% |
| !! | TGGATATAACATGTTTAAAT+TGG | + | chr3.3:83655313-83655332 | None:intergenic | 20.0% |
| !!! | AGAAGTATGAATGAATAATT+TGG | - | chr3.3:83657199-83657218 | MS.gene013037:intron | 20.0% |
| !!! | GCTGTATTTATTTTTCTTTT+TGG | - | chr3.3:83655684-83655703 | MS.gene013037:intron | 20.0% |
| !!! | TCCTTTTCATTATTTTTTCT+GGG | + | chr3.3:83655728-83655747 | None:intergenic | 20.0% |
| !!! | TTCCTTTTCATTATTTTTTC+TGG | + | chr3.3:83655729-83655748 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTTCTCTACAA+TGG | - | chr3.3:83656499-83656518 | MS.gene013037:intron | 20.0% |
| ! | AAAACCAAGTGTAACATAAA+GGG | - | chr3.3:83654141-83654160 | MS.gene013037:intron | 25.0% |
| ! | AATAATGAAAAGGAAACTAC+CGG | - | chr3.3:83655734-83655753 | MS.gene013037:intron | 25.0% |
| ! | AGTGATATAATCATAGGATA+GGG | + | chr3.3:83655338-83655357 | None:intergenic | 25.0% |
| ! | ATGACAATTGGAAAAGAATT+TGG | + | chr3.3:83656635-83656654 | None:intergenic | 25.0% |
| ! | ATTCAGTTAGGACTTATAAT+GGG | + | chr3.3:83655202-83655221 | None:intergenic | 25.0% |
| ! | GAAAATAAAATTTGGTCTGT+AGG | - | chr3.3:83654320-83654339 | MS.gene013037:intron | 25.0% |
| ! | TAGTGATATAATCATAGGAT+AGG | + | chr3.3:83655339-83655358 | None:intergenic | 25.0% |
| ! | TGTCATTAAATACATATTGC+AGG | + | chr3.3:83657427-83657446 | None:intergenic | 25.0% |
| ! | TGTTAAGTTTGTAGCTTAAA+TGG | - | chr3.3:83654240-83654259 | MS.gene013037:CDS | 25.0% |
| ! | TTCGTTTGATCTATTAATTG+AGG | - | chr3.3:83654726-83654745 | MS.gene013037:intron | 25.0% |
| ! | TTCTTCAGATATTAAAGGAA+AGG | - | chr3.3:83655231-83655250 | MS.gene013037:intron | 25.0% |
| ! | TTGTCTTCTTCAGATATTAA+AGG | - | chr3.3:83655226-83655245 | MS.gene013037:intron | 25.0% |
| ! | TTTAATATCTGAAGAAGACA+AGG | + | chr3.3:83655227-83655246 | None:intergenic | 25.0% |
| !! | AAACTAGCTTCAAATTAGAT+TGG | + | chr3.3:83657600-83657619 | None:intergenic | 25.0% |
| !! | AATCTTGATTTGAATTTCAC+TGG | - | chr3.3:83656782-83656801 | MS.gene013037:intron | 25.0% |
| !! | ATATCACTATGTTTTATCAC+TGG | - | chr3.3:83655350-83655369 | MS.gene013037:intron | 25.0% |
| !! | ATCAGCAATTTTATAATCCA+CGG | - | chr3.3:83656899-83656918 | MS.gene013037:intron | 25.0% |
| !! | ATCTTGATTTGAATTTCACT+GGG | - | chr3.3:83656783-83656802 | MS.gene013037:intron | 25.0% |
| !! | TAGATTTCTTCTCTATTTTC+TGG | - | chr3.3:83655521-83655540 | MS.gene013037:intron | 25.0% |
| !!! | AGTGAATCAAAATTTCTAGT+TGG | - | chr3.3:83654280-83654299 | MS.gene013037:intron | 25.0% |
| !!! | ATAAACATTAGGTGTTTTTG+TGG | - | chr3.3:83654635-83654654 | MS.gene013037:intron | 25.0% |
| !!! | ATTTTGATATTGAAAGAGCA+AGG | - | chr3.3:83654378-83654397 | MS.gene013037:CDS | 25.0% |
| !!! | CAAATTGAAAGAGTATCATA+TGG | + | chr3.3:83656213-83656232 | None:intergenic | 25.0% |
| AACAAGACATGTGAAAAATG+TGG | - | chr3.3:83657515-83657534 | MS.gene013037:intron | 30.0% | |
| AATACTCATGATAACTGCTT+GGG | - | chr3.3:83655999-83656018 | MS.gene013037:intron | 30.0% | |
| AATTGTTTACTGCATATGCA+AGG | + | chr3.3:83655129-83655148 | None:intergenic | 30.0% | |
| ACAATTGGAAAAGAATTTGG+AGG | + | chr3.3:83656632-83656651 | None:intergenic | 30.0% | |
| ACCTAGGATGATATTTCAAA+AGG | + | chr3.3:83657225-83657244 | None:intergenic | 30.0% | |
| ATATAACAGAGCTAATATGG+AGG | + | chr3.3:83657063-83657082 | None:intergenic | 30.0% | |
| ATATATAAGCACAATGCCAA+GGG | - | chr3.3:83654584-83654603 | MS.gene013037:intron | 30.0% | |
| CAAAACCAAGTGTAACATAA+AGG | - | chr3.3:83654140-83654159 | MS.gene013037:intron | 30.0% | |
| CATTCAGTTAGGACTTATAA+TGG | + | chr3.3:83655203-83655222 | None:intergenic | 30.0% | |
| GCAGAAAATTCAGTAACTAA+TGG | + | chr3.3:83655938-83655957 | None:intergenic | 30.0% | |
| GCCCAGAAAAAATAATGAAA+AGG | - | chr3.3:83655724-83655743 | MS.gene013037:intron | 30.0% | |
| GTGATATAATCATAGGATAG+GGG | + | chr3.3:83655337-83655356 | None:intergenic | 30.0% | |
| TAATACCTGTCTGGTATAAA+AGG | + | chr3.3:83657555-83657574 | None:intergenic | 30.0% | |
| TAATACTCATGATAACTGCT+TGG | - | chr3.3:83655998-83656017 | MS.gene013037:intron | 30.0% | |
| TATATGTACCTAAGTCATAG+CGG | + | chr3.3:83655645-83655664 | None:intergenic | 30.0% | |
| TATCTTGATTTACTTTGTCG+TGG | - | chr3.3:83657148-83657167 | MS.gene013037:intron | 30.0% | |
| TCAGTTAAAATAGGCTTCTA+TGG | - | chr3.3:83655060-83655079 | MS.gene013037:intron | 30.0% | |
| TCTCTACAATGGATACAATA+TGG | - | chr3.3:83656510-83656529 | MS.gene013037:CDS | 30.0% | |
| TGATATCAAAATCCTAACCT+AGG | + | chr3.3:83657241-83657260 | None:intergenic | 30.0% | |
| TGGATGATATATGATAAGAG+TGG | + | chr3.3:83655578-83655597 | None:intergenic | 30.0% | |
| TTCCTAATTTCAGATGAGAT+CGG | - | chr3.3:83657647-83657666 | MS.gene013037:CDS | 30.0% | |
| TTGAAATATCATCCTAGGTT+AGG | - | chr3.3:83657226-83657245 | MS.gene013037:intron | 30.0% | |
| TTTGACTCAAGTTTGAATAC+TGG | - | chr3.3:83654405-83654424 | MS.gene013037:CDS | 30.0% | |
| !! | TGGTAATGGAATGATTACAA+TGG | + | chr3.3:83656946-83656965 | None:intergenic | 30.0% |
| !! | TGTTGTTGTTGTTTGTTTAC+AGG | - | chr3.3:83657490-83657509 | MS.gene013037:intron | 30.0% |
| !!! | TCATTATTTTTTCTGGGCTT+AGG | + | chr3.3:83655722-83655741 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTGGGATACAAGA+GGG | - | chr3.3:83655696-83655715 | MS.gene013037:intron | 30.0% |
| !!! | TTTTCTTTTTGGGATACAAG+AGG | - | chr3.3:83655695-83655714 | MS.gene013037:intron | 30.0% |
| AAAAAGCTCTTAACTCTCTC+GGG | - | chr3.3:83656597-83656616 | MS.gene013037:intron | 35.0% | |
| AACTACCGGTAAACTAAAAG+AGG | - | chr3.3:83655748-83655767 | MS.gene013037:intron | 35.0% | |
| AAGAACCACATTCAGTCAAA+TGG | - | chr3.3:83656437-83656456 | MS.gene013037:intron | 35.0% | |
| AAGTTACACAATTTCTGCTG+AGG | - | chr3.3:83655258-83655277 | MS.gene013037:intron | 35.0% | |
| AATGATCCTTGTGTACTTTG+TGG | - | chr3.3:83657325-83657344 | MS.gene013037:intron | 35.0% | |
| AATGGGAAAGTAATTAGCAG+TGG | + | chr3.3:83656343-83656362 | None:intergenic | 35.0% | |
| ACATGTGAAAAATGTGGTCA+TGG | - | chr3.3:83657521-83657540 | MS.gene013037:intron | 35.0% | |
| ACGTGAATTGCACAATTGAA+TGG | + | chr3.3:83656361-83656380 | None:intergenic | 35.0% | |
| ACTTCTCTCCATCTGTTAAT+TGG | - | chr3.3:83656239-83656258 | MS.gene013037:intron | 35.0% | |
| ATGGAATGATTACAATGGCT+TGG | + | chr3.3:83656941-83656960 | None:intergenic | 35.0% | |
| ATGTGGTTCTTACAAGCATA+AGG | + | chr3.3:83656428-83656447 | None:intergenic | 35.0% | |
| ATTGTGACTCTGTTCAAGAA+GGG | + | chr3.3:83655554-83655573 | None:intergenic | 35.0% | |
| CAAAAAGCTCTTAACTCTCT+CGG | - | chr3.3:83656596-83656615 | MS.gene013037:intron | 35.0% | |
| CAAGATATGTTTACTTGGCT+GGG | + | chr3.3:83657135-83657154 | None:intergenic | 35.0% | |
| CATATATAAGCACAATGCCA+AGG | - | chr3.3:83654583-83654602 | MS.gene013037:intron | 35.0% | |
| CGATCTAATTGAAGAACAGA+AGG | - | chr3.3:83657378-83657397 | MS.gene013037:intron | 35.0% | |
| CGTGAATTGCACAATTGAAT+GGG | + | chr3.3:83656360-83656379 | None:intergenic | 35.0% | |
| CTATGGACAGAAATGACAAT+TGG | + | chr3.3:83656647-83656666 | None:intergenic | 35.0% | |
| CTATGGTGTAAAGTGATGAA+AGG | + | chr3.3:83657089-83657108 | None:intergenic | 35.0% | |
| CTTCTCTCCATCTGTTAATT+GGG | - | chr3.3:83656240-83656259 | MS.gene013037:intron | 35.0% | |
| GATCATGGAAAAATGCACTA+TGG | + | chr3.3:83657106-83657125 | None:intergenic | 35.0% | |
| GCTAGTATTTCATACTCCTT+AGG | - | chr3.3:83654918-83654937 | MS.gene013037:intron | 35.0% | |
| GCTGATATGAATTTATGTCC+AGG | + | chr3.3:83656729-83656748 | None:intergenic | 35.0% | |
| GGAATGACCAAATGATTGAT+TGG | + | chr3.3:83656812-83656831 | None:intergenic | 35.0% | |
| TAATCCAGAATTTAGTCTGG+AGG | + | chr3.3:83654461-83654480 | None:intergenic | 35.0% | |
| TATAATCATAGGATAGGGGA+TGG | + | chr3.3:83655333-83655352 | None:intergenic | 35.0% | |
| TATTGTGACTCTGTTCAAGA+AGG | + | chr3.3:83655555-83655574 | None:intergenic | 35.0% | |
| TCAAGATATGTTTACTTGGC+TGG | + | chr3.3:83657136-83657155 | None:intergenic | 35.0% | |
| TGGGTAGAATTGAATAAGGA+TGG | + | chr3.3:83656114-83656133 | None:intergenic | 35.0% | |
| TGGTAATCCAGAATTTAGTC+TGG | + | chr3.3:83654464-83654483 | None:intergenic | 35.0% | |
| TGTACCCTTTATGTTACACT+TGG | + | chr3.3:83654148-83654167 | None:intergenic | 35.0% | |
| TGTGATTCATGTCATGTGTA+AGG | - | chr3.3:83654992-83655011 | MS.gene013037:intron | 35.0% | |
| TTACATCATCAAGATACCTC+TGG | - | chr3.3:83655782-83655801 | MS.gene013037:intron | 35.0% | |
| TTGATTTACTTTGTCGTGGT+GGG | - | chr3.3:83657152-83657171 | MS.gene013037:intron | 35.0% | |
| TTTCAAGCCCAATTAACAGA+TGG | + | chr3.3:83656250-83656269 | None:intergenic | 35.0% | |
| TTTGACAGCATTCTCATTGA+CGG | + | chr3.3:83656395-83656414 | None:intergenic | 35.0% | |
| ! | AAACACACTAGCATTGAACA+TGG | + | chr3.3:83655598-83655617 | None:intergenic | 35.0% |
| ! | AGAGAGTTAAGAGCTTTTTG+TGG | + | chr3.3:83656596-83656615 | None:intergenic | 35.0% |
| ! | AGTACTAGTTCTCTGTTATG+TGG | + | chr3.3:83656678-83656697 | None:intergenic | 35.0% |
| !! | AAAGAGTATCATATGGCTCA+AGG | + | chr3.3:83656206-83656225 | None:intergenic | 35.0% |
| !! | AAGAGTATCATATGGCTCAA+GGG | + | chr3.3:83656205-83656224 | None:intergenic | 35.0% |
| !! | CATTAGCTTGTCATCAACTT+TGG | + | chr3.3:83656307-83656326 | None:intergenic | 35.0% |
| !! | GAGGTATCTTGATGATGTAA+AGG | + | chr3.3:83655782-83655801 | None:intergenic | 35.0% |
| !! | GTGTTGTTATTTGTTACCCT+TGG | + | chr3.3:83654603-83654622 | None:intergenic | 35.0% |
| !! | TCACTGGCTTATAGTTCTTA+CGG | - | chr3.3:83655366-83655385 | MS.gene013037:intron | 35.0% |
| !!! | AGTTTTGGAGAGTTTTGCTT+GGG | + | chr3.3:83656077-83656096 | None:intergenic | 35.0% |
| !!! | CATTAGTTTTTAAGCTCCCA+TGG | - | chr3.3:83656562-83656581 | MS.gene013037:intron | 35.0% |
| !!! | GCCTTTTGAAATATCATCCT+AGG | - | chr3.3:83657221-83657240 | MS.gene013037:intron | 35.0% |
| !!! | TTACACTTGGTTTTGCACAA+GGG | + | chr3.3:83654135-83654154 | None:intergenic | 35.0% |
| AAAGTGTGTGTTAGTGCCAA+TGG | + | chr3.3:83655973-83655992 | None:intergenic | 40.0% | |
| ATCCTTGTGTACTTTGTGGT+TGG | - | chr3.3:83657329-83657348 | MS.gene013037:intron | 40.0% | |
| ATTAGCAGTGGAGAGACTAT+TGG | + | chr3.3:83656331-83656350 | None:intergenic | 40.0% | |
| ATTGTGGAAGACTATGGTGA+GGG | + | chr3.3:83657006-83657025 | None:intergenic | 40.0% | |
| ATTTCATACTCCTTAGGTGC+AGG | - | chr3.3:83654924-83654943 | MS.gene013037:intron | 40.0% | |
| CAACATGCGTAATCAGTTGA+GGG | + | chr3.3:83654111-83654130 | None:intergenic | 40.0% | |
| CGGTAAACTAAAAGAGGAGT+GGG | - | chr3.3:83655754-83655773 | MS.gene013037:intron | 40.0% | |
| CTAATTTCAGATGAGATCGG+CGG | - | chr3.3:83657650-83657669 | MS.gene013037:CDS | 40.0% | |
| CTTACCTCCAGACTAAATTC+TGG | - | chr3.3:83654454-83654473 | MS.gene013037:intron | 40.0% | |
| CTTGATTTACTTTGTCGTGG+TGG | - | chr3.3:83657151-83657170 | MS.gene013037:intron | 40.0% | |
| GAAGACAAGGACATTCAGTT+AGG | + | chr3.3:83655214-83655233 | None:intergenic | 40.0% | |
| GAAGTCTCATAATACCTGTC+TGG | + | chr3.3:83657564-83657583 | None:intergenic | 40.0% | |
| GACACTTTGCACTTTCTGTT+TGG | + | chr3.3:83654520-83654539 | None:intergenic | 40.0% | |
| GATTGATCAAGGATTCAAGG+CGG | + | chr3.3:83656043-83656062 | None:intergenic | 40.0% | |
| GGGTTGGGTAGAATTGAATA+AGG | + | chr3.3:83656118-83656137 | None:intergenic | 40.0% | |
| GGTGATTGATCAAGGATTCA+AGG | + | chr3.3:83656046-83656065 | None:intergenic | 40.0% | |
| GTTATGTGGTCATGCTTCTA+TGG | + | chr3.3:83656664-83656683 | None:intergenic | 40.0% | |
| TACCTCTGGCTAATCTGATT+AGG | - | chr3.3:83655796-83655815 | MS.gene013037:intron | 40.0% | |
| TACTCATATCGAGCGAAGTT+TGG | - | chr3.3:83656975-83656994 | MS.gene013037:intron | 40.0% | |
| TGCATATGCAAGGACAGTAA+CGG | + | chr3.3:83655119-83655138 | None:intergenic | 40.0% | |
| TGGAAAAGAATTTGGAGGCT+GGG | + | chr3.3:83656627-83656646 | None:intergenic | 40.0% | |
| TGGGCAACCAATCAATCATT+TGG | - | chr3.3:83656802-83656821 | MS.gene013037:intron | 40.0% | |
| TTAGCAGTGGAGAGACTATT+GGG | + | chr3.3:83656330-83656349 | None:intergenic | 40.0% | |
| TTATGTCCAGGAGATGTGTT+TGG | + | chr3.3:83656717-83656736 | None:intergenic | 40.0% | |
| TTCTGCATTGTGGAAGACTA+TGG | + | chr3.3:83657012-83657031 | None:intergenic | 40.0% | |
| TTGACAGCATTCTCATTGAC+GGG | + | chr3.3:83656394-83656413 | None:intergenic | 40.0% | |
| TTGGAAAAGAATTTGGAGGC+TGG | + | chr3.3:83656628-83656647 | None:intergenic | 40.0% | |
| TTTCATACTCCTTAGGTGCA+GGG | - | chr3.3:83654925-83654944 | MS.gene013037:intron | 40.0% | |
| ! | ACAGAAGGTGCAATTGTCTA+AGG | - | chr3.3:83657393-83657412 | MS.gene013037:intron | 40.0% |
| ! | ACTTGCCATTTGACTGAATG+TGG | + | chr3.3:83656445-83656464 | None:intergenic | 40.0% |
| ! | ATAGGCTTCTATGGTGCTTT+TGG | - | chr3.3:83655069-83655088 | MS.gene013037:intron | 40.0% |
| ! | CAATGGCTTGGAATCATAGT+TGG | + | chr3.3:83656929-83656948 | None:intergenic | 40.0% |
| ! | CGATATGAGTATCGTTCTGT+TGG | + | chr3.3:83656966-83656985 | None:intergenic | 40.0% |
| ! | GAGTATCGTTCTGTTGGTAA+TGG | + | chr3.3:83656960-83656979 | None:intergenic | 40.0% |
| ! | GGTGCAATTGTCTAAGGTAA+TGG | - | chr3.3:83657399-83657418 | MS.gene013037:intron | 40.0% |
| ! | TTTCTGTTCTGTCACTTGTG+TGG | - | chr3.3:83654069-83654088 | MS.gene013037:CDS | 40.0% |
| !! | ACTGAAACTTGCTGCAGATT+TGG | - | chr3.3:83656864-83656883 | MS.gene013037:intron | 40.0% |
| !! | CTTGTCATCAACTTTGGAGT+TGG | + | chr3.3:83656301-83656320 | None:intergenic | 40.0% |
| !! | TAGTTTTTAAGCTCCCATGG+AGG | - | chr3.3:83656565-83656584 | MS.gene013037:intron | 40.0% |
| !!! | CCACTCCTCTTTTAGTTTAC+CGG | + | chr3.3:83655756-83655775 | None:intergenic | 40.0% |
| !!! | GAGTTTTGGAGAGTTTTGCT+TGG | + | chr3.3:83656078-83656097 | None:intergenic | 40.0% |
| !!! | GTTACACTTGGTTTTGCACA+AGG | + | chr3.3:83654136-83654155 | None:intergenic | 40.0% |
| !!! | TACACTTGGTTTTGCACAAG+GGG | + | chr3.3:83654134-83654153 | None:intergenic | 40.0% |
| AAACTGCCAAACACATCTCC+TGG | - | chr3.3:83656708-83656727 | MS.gene013037:intron | 45.0% | |
| AACCACTGCACACTTTGCAA+AGG | - | chr3.3:83655425-83655444 | MS.gene013037:intron | 45.0% | |
| AATAAGGATGGAGCCAGCAT+AGG | + | chr3.3:83656102-83656121 | None:intergenic | 45.0% | |
| AATTCTACCCAACCCGTCAA+AGG | - | chr3.3:83656123-83656142 | MS.gene013037:intron | 45.0% | |
| AGTAACTAATGGAGCGTGAG+TGG | + | chr3.3:83655927-83655946 | None:intergenic | 45.0% | |
| AGTTGGAAACCTCCTTTGAC+GGG | + | chr3.3:83656138-83656157 | None:intergenic | 45.0% | |
| AGTTTCAGTAGCAGCAGGAT+TGG | + | chr3.3:83656853-83656872 | None:intergenic | 45.0% | |
| ATCCTTTGCAAAGTGTGCAG+TGG | + | chr3.3:83655430-83655449 | None:intergenic | 45.0% | |
| ATGTACCTAAGTCATAGCGG+AGG | + | chr3.3:83655642-83655661 | None:intergenic | 45.0% | |
| CACAACAGGTTCAGATCAGT+TGG | + | chr3.3:83656155-83656174 | None:intergenic | 45.0% | |
| CAGGATATCAGAAGGGAACT+TGG | - | chr3.3:83657352-83657371 | MS.gene013037:intron | 45.0% | |
| CAGTTGGAAACCTCCTTTGA+CGG | + | chr3.3:83656139-83656158 | None:intergenic | 45.0% | |
| CATTGTGGAAGACTATGGTG+AGG | + | chr3.3:83657007-83657026 | None:intergenic | 45.0% | |
| CCGGTAAACTAAAAGAGGAG+TGG | - | chr3.3:83655753-83655772 | MS.gene013037:intron | 45.0% | |
| CTGCAGATGGTGATTGATCA+AGG | + | chr3.3:83656054-83656073 | None:intergenic | 45.0% | |
| CTTGTGTGGAACAATGCTCA+CGG | - | chr3.3:83654083-83654102 | MS.gene013037:CDS | 45.0% | |
| GAAAAGAATTTGGAGGCTGG+GGG | + | chr3.3:83656625-83656644 | None:intergenic | 45.0% | |
| GAATCATAGTTGGATTGCCG+TGG | + | chr3.3:83656919-83656938 | None:intergenic | 45.0% | |
| GCAACATGCGTAATCAGTTG+AGG | + | chr3.3:83654112-83654131 | None:intergenic | 45.0% | |
| GGAAAAGAATTTGGAGGCTG+GGG | + | chr3.3:83656626-83656645 | None:intergenic | 45.0% | |
| GTAACTAATGGAGCGTGAGT+GGG | + | chr3.3:83655926-83655945 | None:intergenic | 45.0% | |
| GTGTGCGTTGCTTCAATACA+TGG | + | chr3.3:83654679-83654698 | None:intergenic | 45.0% | |
| TACCAGAGTGCAATTCGTCA+GGG | - | chr3.3:83654479-83654498 | MS.gene013037:intron | 45.0% | |
| TGACAGCATTCTCATTGACG+GGG | + | chr3.3:83656393-83656412 | None:intergenic | 45.0% | |
| TGCCAACCACAAAGTACACA+AGG | + | chr3.3:83657334-83657353 | None:intergenic | 45.0% | |
| TGGTTGGCAGGATATCAGAA+GGG | - | chr3.3:83657345-83657364 | MS.gene013037:intron | 45.0% | |
| TGTGTGTTAGTGCCAATGGT+TGG | + | chr3.3:83655969-83655988 | None:intergenic | 45.0% | |
| TTACCAGAGTGCAATTCGTC+AGG | - | chr3.3:83654478-83654497 | MS.gene013037:intron | 45.0% | |
| TTCATACTCCTTAGGTGCAG+GGG | - | chr3.3:83654926-83654945 | MS.gene013037:intron | 45.0% | |
| TTGGCTGGGAACATAGATCA+TGG | + | chr3.3:83657121-83657140 | None:intergenic | 45.0% | |
| TTGTGTACTTTGTGGTTGGC+AGG | - | chr3.3:83657333-83657352 | MS.gene013037:intron | 45.0% | |
| ! | AGCTGCCTTTTATACCAGAC+AGG | - | chr3.3:83657547-83657566 | MS.gene013037:intron | 45.0% |
| ! | CGCCGATCTCATCTGAAATT+AGG | + | chr3.3:83657652-83657671 | None:intergenic | 45.0% |
| ! | GTCCTAATCAGATTAGCCAG+AGG | + | chr3.3:83655801-83655820 | None:intergenic | 45.0% |
| ! | TACTTTGTCGTGGTGGGATA+TGG | - | chr3.3:83657158-83657177 | MS.gene013037:intron | 45.0% |
| ! | TGGTGGATGCAAGTGGAAAT+CGG | + | chr3.3:83656833-83656852 | None:intergenic | 45.0% |
| !! | GAAACTTGCTGCAGATTTGG+CGG | - | chr3.3:83656867-83656886 | MS.gene013037:intron | 45.0% |
| !! | TTTTGTGGCTTGTCCTCCAT+GGG | + | chr3.3:83656581-83656600 | None:intergenic | 45.0% |
| !! | TTTTTGTGGCTTGTCCTCCA+TGG | + | chr3.3:83656582-83656601 | None:intergenic | 45.0% |
| AGATGAGATCGGCGGATGAA+GGG | - | chr3.3:83657658-83657677 | MS.gene013037:CDS | 50.0% | |
| AGGGCTGAAGCTGTGATCAA+TGG | + | chr3.3:83656186-83656205 | None:intergenic | 50.0% | |
| ATCCCTGACGAATTGCACTC+TGG | + | chr3.3:83654484-83654503 | None:intergenic | 50.0% | |
| CAGCAAGTTTCAGTAGCAGC+AGG | + | chr3.3:83656858-83656877 | None:intergenic | 50.0% | |
| CCTGAAACTGATGACCACAG+CGG | + | chr3.3:83657707-83657726 | None:intergenic | 50.0% | |
| CTGAAACTGATGACCACAGC+GGG | + | chr3.3:83657706-83657725 | None:intergenic | 50.0% | |
| CTGAAGCTGTGATCAATGGC+AGG | + | chr3.3:83656182-83656201 | None:intergenic | 50.0% | |
| GAGTGCAATTCGTCAGGGAT+CGG | - | chr3.3:83654484-83654503 | MS.gene013037:intron | 50.0% | |
| GTGGTTGGCAGGATATCAGA+AGG | - | chr3.3:83657344-83657363 | MS.gene013037:intron | 50.0% | |
| GTTCTTACGGCTGAGTGACT+AGG | - | chr3.3:83655379-83655398 | MS.gene013037:intron | 50.0% | |
| TCATATCAGCCCCTAACTCC+TGG | - | chr3.3:83656739-83656758 | MS.gene013037:intron | 50.0% | |
| TCTCCAAAACTCGCCTATGC+TGG | - | chr3.3:83656086-83656105 | MS.gene013037:intron | 50.0% | |
| TGATCAAGGATTCAAGGCGG+TGG | + | chr3.3:83656040-83656059 | None:intergenic | 50.0% | |
| TTCAGTAGCAGCAGGATTGG+TGG | + | chr3.3:83656850-83656869 | None:intergenic | 50.0% | |
| ! | AGTTTTGCTTGGGCTGCAGA+TGG | + | chr3.3:83656067-83656086 | None:intergenic | 50.0% |
| ! | CAGCAGCTGATTCTGCATTG+TGG | + | chr3.3:83657022-83657041 | None:intergenic | 50.0% |
| ! | CTGCACTAGTCTCCAACCAT+TGG | - | chr3.3:83655954-83655973 | MS.gene013037:intron | 50.0% |
| ! | TACCTAAGTCATAGCGGAGG+TGG | + | chr3.3:83655639-83655658 | None:intergenic | 50.0% |
| !! | GAAACCTCCTTTGACGGGTT+GGG | + | chr3.3:83656133-83656152 | None:intergenic | 50.0% |
| ATCCATTCTGCCTCCACACC+AGG | + | chr3.3:83656760-83656779 | None:intergenic | 55.0% | |
| CAATGGCAGGCATGCACAAC+AGG | + | chr3.3:83656169-83656188 | None:intergenic | 55.0% | |
| CAGATGAGATCGGCGGATGA+AGG | - | chr3.3:83657657-83657676 | MS.gene013037:CDS | 55.0% | |
| CAGCATTCTCATTGACGGGG+TGG | + | chr3.3:83656390-83656409 | None:intergenic | 55.0% | |
| CAGTTGTACCCCTGCACCTA+AGG | + | chr3.3:83654937-83654956 | None:intergenic | 55.0% | |
| CCGCTGTGGTCATCAGTTTC+AGG | - | chr3.3:83657704-83657723 | MS.gene013037:CDS | 55.0% | |
| CGGCTGAGTGACTAGGTGTT+TGG | - | chr3.3:83655386-83655405 | MS.gene013037:intron | 55.0% | |
| GAAGCGAACATGTGTGCGGA+TGG | + | chr3.3:83655877-83655896 | None:intergenic | 55.0% | |
| GCAATTCGTCAGGGATCGGA+GGG | - | chr3.3:83654488-83654507 | MS.gene013037:intron | 55.0% | |
| GGAAGACTATGGTGAGGGTG+TGG | + | chr3.3:83657001-83657020 | None:intergenic | 55.0% | |
| GTCCACCTCCGCTATGACTT+AGG | - | chr3.3:83655634-83655653 | MS.gene013037:intron | 55.0% | |
| TCGGGAAGCGAACATGTGTG+CGG | + | chr3.3:83655881-83655900 | None:intergenic | 55.0% | |
| TCTACCCAACCCGTCAAAGG+AGG | - | chr3.3:83656126-83656145 | MS.gene013037:intron | 55.0% | |
| TGCAATTCGTCAGGGATCGG+AGG | - | chr3.3:83654487-83654506 | MS.gene013037:intron | 55.0% | |
| TGCCTCCACACCAGGAGTTA+GGG | + | chr3.3:83656752-83656771 | None:intergenic | 55.0% | |
| TTCTACACATGCACCCGCTG+TGG | - | chr3.3:83657690-83657709 | MS.gene013037:CDS | 55.0% | |
| ! | GAGCCAGCATAGGCGAGTTT+TGG | + | chr3.3:83656092-83656111 | None:intergenic | 55.0% |
| ! | GCAGGATTGGTGGATGCAAG+TGG | + | chr3.3:83656840-83656859 | None:intergenic | 55.0% |
| ! | GGAAACCTCCTTTGACGGGT+TGG | + | chr3.3:83656134-83656153 | None:intergenic | 55.0% |
| !! | GCGGATGGACTTGCTAGTGT+TGG | + | chr3.3:83655862-83655881 | None:intergenic | 55.0% |
| CTCCTGGTGTGGAGGCAGAA+TGG | - | chr3.3:83656755-83656774 | MS.gene013037:intron | 60.0% | |
| CTGCCTCCACACCAGGAGTT+AGG | + | chr3.3:83656753-83656772 | None:intergenic | 60.0% | |
| GCCTCCACACCAGGAGTTAG+GGG | + | chr3.3:83656751-83656770 | None:intergenic | 60.0% | |
| TCAGCCCCTAACTCCTGGTG+TGG | - | chr3.3:83656744-83656763 | MS.gene013037:intron | 60.0% | |
| GCCCCTAACTCCTGGTGTGG+AGG | - | chr3.3:83656747-83656766 | MS.gene013037:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83654048 | 83657734 | 83654048 | ID=MS.gene013037 |
| chr3.3 | mRNA | 83654048 | 83657734 | 83654048 | ID=MS.gene013037.t1;Parent=MS.gene013037 |
| chr3.3 | exon | 83657620 | 83657734 | 83657620 | ID=MS.gene013037.t1.exon1;Parent=MS.gene013037.t1 |
| chr3.3 | CDS | 83657620 | 83657734 | 83657620 | ID=cds.MS.gene013037.t1;Parent=MS.gene013037.t1 |
| chr3.3 | exon | 83656503 | 83656543 | 83656503 | ID=MS.gene013037.t1.exon2;Parent=MS.gene013037.t1 |
| chr3.3 | CDS | 83656503 | 83656543 | 83656503 | ID=cds.MS.gene013037.t1;Parent=MS.gene013037.t1 |
| chr3.3 | exon | 83654368 | 83654427 | 83654368 | ID=MS.gene013037.t1.exon3;Parent=MS.gene013037.t1 |
| chr3.3 | CDS | 83654368 | 83654427 | 83654368 | ID=cds.MS.gene013037.t1;Parent=MS.gene013037.t1 |
| chr3.3 | exon | 83654214 | 83654270 | 83654214 | ID=MS.gene013037.t1.exon4;Parent=MS.gene013037.t1 |
| chr3.3 | CDS | 83654214 | 83654270 | 83654214 | ID=cds.MS.gene013037.t1;Parent=MS.gene013037.t1 |
| chr3.3 | exon | 83654048 | 83654122 | 83654048 | ID=MS.gene013037.t1.exon5;Parent=MS.gene013037.t1 |
| chr3.3 | CDS | 83654048 | 83654122 | 83654048 | ID=cds.MS.gene013037.t1;Parent=MS.gene013037.t1 |
| Gene Sequence |
| Protein sequence |
